AlfalfaGEDB | MS.gene86331

M. sativa cultivar XinJiangDaYe / MS.gene86331

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86331.t1	RHN76862.1	92	376	30	0	1	376	294	669	1.80E-195	691.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86331.t1	Q39191	54.8	378	160	7	1	376	367	735	6.5e-106	385.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86331.t1	A0A396JHU5	92.0	376	30	0	1	376	294	669	1.3e-195	691.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene86331	0.870191	1.76E-66	-1.69E-46
MS.gene050133	MS.gene86331	-0.804353	2.25E-49	-1.69E-46
MS.gene050426	MS.gene86331	-0.849603	2.91E-60	-1.69E-46
MS.gene050640	MS.gene86331	0.823508	1.33E-53	-1.69E-46
MS.gene050670	MS.gene86331	0.804584	2.01E-49	-1.69E-46
MS.gene051208	MS.gene86331	0.800044	1.73E-48	-1.69E-46
MS.gene051525	MS.gene86331	0.863471	2.43E-64	-1.69E-46
MS.gene051588	MS.gene86331	0.810853	9.38E-51	-1.69E-46
MS.gene051860	MS.gene86331	0.808358	3.22E-50	-1.69E-46
MS.gene051980	MS.gene86331	0.807463	4.99E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene86331.t1	MTR_1g010260	86.198	384	21	2	1	376	372	731	660
MS.gene86331.t1	MTR_1g010250	90.312	320	30	1	57	376	309	627	605
MS.gene86331.t1	MTR_1g010220	82.891	339	56	2	1	339	373	709	568
MS.gene86331.t1	MTR_1g027570	73.475	377	98	2	1	376	369	744	560
MS.gene86331.t1	MTR_1g027580	72.944	377	100	2	1	376	369	744	554
MS.gene86331.t1	MTR_1g027660	72.149	377	103	2	1	376	346	721	548
MS.gene86331.t1	MTR_1g027600	71.618	377	105	2	1	376	372	747	548
MS.gene86331.t1	MTR_1g027640	70.557	377	109	2	1	376	374	749	540
MS.gene86331.t1	MTR_1g027670	68.519	378	116	3	1	376	11	387	532
MS.gene86331.t1	MTR_1g010240	72.606	376	26	2	1	376	347	645	531

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86331.t1	AT1G21250	54.762	378	160	7	1	376	367	735	4.96e-134	400
MS.gene86331.t1	AT1G21230	54.497	378	160	7	1	376	366	733	2.34e-133	398
MS.gene86331.t1	AT1G21210	52.116	378	172	6	1	376	368	738	2.27e-131	394
MS.gene86331.t1	AT1G21240	53.175	378	166	7	1	376	373	741	4.41e-130	390
MS.gene86331.t1	AT3G25490	52.520	377	167	7	2	376	67	433	5.07e-127	372
MS.gene86331.t1	AT1G21270	52.116	378	172	6	1	376	362	732	1.11e-126	381
MS.gene86331.t1	AT1G16130	55.836	317	138	2	3	319	376	690	2.98e-118	360
MS.gene86331.t1	AT1G21240	54.908	326	137	6	53	376	163	480	3.10e-118	352
MS.gene86331.t1	AT1G79670	54.921	315	140	2	5	319	346	658	7.06e-116	353
MS.gene86331.t1	AT1G79670	54.921	315	140	2	5	319	383	695	1.68e-115	353

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Find 81 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTATATAGCTT+TGG	0.415407	1.3:-9851660	MS.gene86331:CDS
AAACAAACAAGAGATCAAGG+AGG	0.782860	1.3:-9851490	MS.gene86331:CDS
AAATTATTCAAGATGATTTG+TGG	0.389683	1.3:-9851521	MS.gene86331:CDS
AAATTCTTTGAACAGAATGG+TGG	0.621414	1.3:-9852326	MS.gene86331:CDS
AACTCGTCTTAAAATAGCTG+CGG	0.618241	1.3:-9851910	MS.gene86331:CDS
AAGACCAAGCATGAAGGAAG+TGG	0.554397	1.3:-9851424	MS.gene86331:CDS
AAGCATGAAGGAAGTGGCTA+TGG	0.511787	1.3:-9851418	MS.gene86331:CDS
AATAGTTCCTTGCACCATTG+TGG	0.585514	1.3:+9851728	None:intergenic
AATCGATCAGTTCATTAATG+AGG	0.580573	1.3:-9852093	MS.gene86331:CDS
AATTTAATCATTGGCAAAGG+TGG	0.556643	1.3:-9852197	MS.gene86331:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCTTTGAACAGAATGG+TGG	-	chr1.3:9851236-9851255	MS.gene86331:CDS	30.0%
AATCGATCAGTTCATTAATG+AGG	-	chr1.3:9851469-9851488	MS.gene86331:CDS	30.0%
AATTTAATCATTGGCAAAGG+TGG	-	chr1.3:9851365-9851384	MS.gene86331:CDS	30.0%
AGAAAACAAACAAGAGATCA+AGG	-	chr1.3:9852069-9852088	MS.gene86331:CDS	30.0%
AGTGATAACATTCTCTTAGA+TGG	-	chr1.3:9851743-9851762	MS.gene86331:CDS	30.0%
ATAAGGTGAATGATGAAACA+TGG	-	chr1.3:9851627-9851646	MS.gene86331:CDS	30.0%
CAATGATGATTTGAATGTAG+AGG	-	chr1.3:9852207-9852226	MS.gene86331:CDS	30.0%
CATTAATGAACTGATCGATT+TGG	+	chr1.3:9851469-9851488	None:intergenic	30.0%
GAGAAATTCTTTGAACAGAA+TGG	-	chr1.3:9851233-9851252	MS.gene86331:CDS	30.0%
GAGAATTTAATCATTGGCAA+AGG	-	chr1.3:9851362-9851381	MS.gene86331:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	9851227	9852357	9851227	ID=MS.gene86331
chr1.3	mRNA	9851227	9852357	9851227	ID=MS.gene86331.t1;Parent=MS.gene86331
chr1.3	exon	9851227	9852357	9851227	ID=MS.gene86331.t1.exon1;Parent=MS.gene86331.t1
chr1.3	CDS	9851227	9852357	9851227	ID=cds.MS.gene86331.t1;Parent=MS.gene86331.t1

Gene Sequence

>MS.gene86331

ATGAAAGAGAAATTCTTTGAACAGAATGGTGGTTTGATTTTGAAACAAAAACTCTCCGCAAGTGAAGACTCCTCCTCTCAAAGTGCTAAAATATTCACACAAGATCAGCTAAACAAGGCCACCAAAAACTTTGACGAGAATTTAATCATTGGCAAAGGTGGTTTTGGTACTGTTTTCAAAGGATCTCTCGATAATAAAAGAATCGTTGCTATAAAAAAATCAAAAATAATAGATAGAAGCCAAATCGATCAGTTCATTAATGAGGTGGTTGTTCTCTCTCAAATAAATCATAGGAATGTTGTCAAACTCTTGGGATGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTACCAATGGCACCCTTTCTGGTTTCATACACACACAAGGTAATAAGGTGAATGATGAAACATGGAAAACTCGTCTTAAAATAGCTGCGGAGGTAGCTGAAGCTTTGTCATATCTACATTCATATGCCTCAACACCCATCATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACATTGCCAAAGTGTCAGATTTTGGAGCATCAAGGTTTGTTCCACTTGATCAAATGGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAGTTGACTGAAAAAAGTGATGTATATAGCTTTGGAGTAGTTCTTGTGGAGTTGCTAACGGGGGAGAAACCTTTTTGTTTTGGTAAGCCGGAAGAGAGAAGGAGTCTTGCTATGCACTTTCTGTCTTGCTTGAAAAAGGATAATGTGTTTGAAATTATTCAAGATGATTTGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTGGTTGTTCTTGCGGCTAAGTGTTTGAGACTTAGAGGGGAAGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGAATAAACACTCTTGGGTCAATGATGATTTGAATGTAGAGGAGAGTCGGTACTTGCTTCATGAATCATCATCCAGCCTTTATGAACCTGGTGATAGCAGCACACATGGAGATATGGGATATGACAGCTTGAAAGACCATGTACTGATAGCATTGGATGATGGAAGATGA

Protein sequence

>MS.gene86331.t1

MKEKFFEQNGGLILKQKLSASEDSSSQSAKIFTQDQLNKATKNFDENLIIGKGGFGTVFKGSLDNKRIVAIKKSKIIDRSQIDQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVTNGTLSGFIHTQGNKVNDETWKTRLKIAAEVAEALSYLHSYASTPIIHRDVKSDNILLDGTNIAKVSDFGASRFVPLDQMEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFCFGKPEERRSLAMHFLSCLKKDNVFEIIQDDLWNEENKQEIKEVVVLAAKCLRLRGEERPSMKEVAMELEGMRLMNKHSWVNDDLNVEESRYLLHESSSSLYEPGDSSTHGDMGYDSLKDHVLIALDDGR