AlfalfaGEDB | MS.gene91428

M. sativa cultivar XinJiangDaYe / MS.gene91428

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01657.20 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91428.t1	XP_003592436.1	94.9	667	33	1	1	666	7	673	0.00E+00	1218.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91428.t1	Q9M0X5	52.9	678	296	7	5	666	5	675	3.1e-183	643.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91428.t1	G7IE16	94.9	667	33	1	1	666	7	673	0.0e+00	1218.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene91428	0.864868	8.92E-65	-1.69E-46
MS.gene050820	MS.gene91428	0.800151	1.65E-48	-1.69E-46
MS.gene051544	MS.gene91428	0.813085	3.06E-51	-1.69E-46
MS.gene051568	MS.gene91428	0.821511	3.88E-53	-1.69E-46
MS.gene051983	MS.gene91428	0.807568	4.74E-50	-1.69E-46
MS.gene052011	MS.gene91428	-0.847735	9.58E-60	-1.69E-46
MS.gene052333	MS.gene91428	0.835144	1.99E-56	-1.69E-46
MS.gene052353	MS.gene91428	0.806695	7.26E-50	-1.69E-46
MS.gene052589	MS.gene91428	0.802428	5.64E-49	-1.69E-46
MS.gene052590	MS.gene91428	0.802686	4.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene91428.t1	MTR_1g104890	95.352	667	30	1	1	666	7	673	1276
MS.gene91428.t1	MTR_1g104890	94.765	554	29	0	1	554	7	560	1074
MS.gene91428.t1	MTR_1g104890	92.343	431	32	1	1	430	7	437	803
MS.gene91428.t1	MTR_1g105650	57.774	611	234	9	46	635	45	652	688
MS.gene91428.t1	MTR_1g105655	52.038	638	287	8	39	666	41	669	641
MS.gene91428.t1	MTR_1g105820	48.571	665	325	10	14	666	12	671	593
MS.gene91428.t1	MTR_5g068260	47.662	663	331	8	15	666	9	666	592
MS.gene91428.t1	MTR_1g105640	49.271	617	301	6	14	625	14	623	591
MS.gene91428.t1	MTR_1g105640	49.271	617	301	6	14	625	14	623	590
MS.gene91428.t1	MTR_1g105640	49.271	617	301	6	14	625	14	623	590

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene91428.t1	AT4G05200	50.952	683	310	7	1	666	1	675	695
MS.gene91428.t1	AT4G05200	50.952	683	310	7	1	666	19	693	695
MS.gene91428.t1	AT4G23180	49.923	651	300	8	28	666	33	669	619
MS.gene91428.t1	AT4G23230	50.577	607	275	8	34	624	26	623	600
MS.gene91428.t1	AT4G23160	48.462	650	306	10	34	666	45	682	597
MS.gene91428.t1	AT4G11530	47.706	654	301	7	45	666	32	676	594
MS.gene91428.t1	AT4G23140	47.683	669	303	12	28	666	23	674	580
MS.gene91428.t1	AT4G23280	47.218	665	309	13	26	666	20	666	577
MS.gene91428.t1	AT4G23280	47.511	663	308	13	26	666	20	664	577
MS.gene91428.t1	AT4G23270	46.224	662	333	8	10	666	2	645	575

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Find 108 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGATGTGTATAGCTT+TGG	0.451479	1.3:+71645952	MS.gene91428:CDS
AAAACTACTGTCTGCATGGA+TGG	0.541362	1.3:-71646579	None:intergenic
AAAGGATGTGATCTTCTTTC+CGG	0.291654	1.3:-71645998	None:intergenic
AAATTAGGGGAAGGAGGATT+TGG	0.321964	1.3:+71644832	MS.gene91428:CDS
AAATTGCAAGAATTCTACTC+TGG	0.575317	1.3:-71644761	None:intergenic
AACCCCGAAAACACAGTATA+CGG	0.395841	1.3:+71643609	MS.gene91428:CDS
AACTCAGTGCCTCAAGAAAG+TGG	0.525007	1.3:+71644511	MS.gene91428:CDS
AACTCTGTTTGTGATTCCTC+GGG	0.483552	1.3:-71645628	None:intergenic
AAGAGGCTATCAAGAAGTTC+TGG	0.403541	1.3:+71645017	MS.gene91428:CDS
AAGATCTCCACGGCAGAGGA+AGG	0.588684	1.3:-71643634	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAGATGTGTATAGCTT+TGG	+	chr1.3:71645952-71645971	MS.gene91428:CDS	30.0%
AAATTGCAAGAATTCTACTC+TGG	-	chr1.3:71644764-71644783	None:intergenic	30.0%
AAGATTTCTGTGTTGTAGTT+TGG	-	chr1.3:71645084-71645103	None:intergenic	30.0%
ACATGGATTTGATCTACATT+TGG	+	chr1.3:71644878-71644897	MS.gene91428:intron	30.0%
AGAAATCTTGTTAGGATTCT+TGG	+	chr1.3:71645095-71645114	MS.gene91428:CDS	30.0%
AGACGATACAAGATAATAGA+AGG	+	chr1.3:71645456-71645475	MS.gene91428:CDS	30.0%
AGCAACAAAATGATCACAAT+AGG	-	chr1.3:71644442-71644461	None:intergenic	30.0%
ATTAACTCACATAGCTCAAA+AGG	-	chr1.3:71646047-71646066	None:intergenic	30.0%
CATAGAACAATTCAAGAATG+AGG	+	chr1.3:71645046-71645065	MS.gene91428:CDS	30.0%
CTTGGAAAAAATGGAATGAT+GGG	+	chr1.3:71646445-71646464	MS.gene91428:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	71643369	71646782	71643369	ID=MS.gene91428
chr1.3	mRNA	71643369	71646782	71643369	ID=MS.gene91428.t1;Parent=MS.gene91428
chr1.3	exon	71643369	71644173	71643369	ID=MS.gene91428.t1.exon1;Parent=MS.gene91428.t1
chr1.3	CDS	71643369	71644173	71643369	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1
chr1.3	exon	71644392	71644532	71644392	ID=MS.gene91428.t1.exon2;Parent=MS.gene91428.t1
chr1.3	CDS	71644392	71644532	71644392	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1
chr1.3	exon	71644752	71644867	71644752	ID=MS.gene91428.t1.exon3;Parent=MS.gene91428.t1
chr1.3	CDS	71644752	71644867	71644752	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1
chr1.3	exon	71644984	71645194	71644984	ID=MS.gene91428.t1.exon4;Parent=MS.gene91428.t1
chr1.3	CDS	71644984	71645194	71644984	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1
chr1.3	exon	71645424	71645661	71645424	ID=MS.gene91428.t1.exon5;Parent=MS.gene91428.t1
chr1.3	CDS	71645424	71645661	71645424	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1
chr1.3	exon	71645906	71646056	71645906	ID=MS.gene91428.t1.exon6;Parent=MS.gene91428.t1
chr1.3	CDS	71645906	71646056	71645906	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1
chr1.3	exon	71646444	71646782	71646444	ID=MS.gene91428.t1.exon7;Parent=MS.gene91428.t1
chr1.3	CDS	71646444	71646782	71646444	ID=cds.MS.gene91428.t1;Parent=MS.gene91428.t1

Gene Sequence

>MS.gene91428

ATGCCGCACCACTTCAAATTCTCTACCACTGCCTATGTTTTCTTTTGCTTCACACTAATTATAACCATAATAAAAACTCAAGCAGCTACAGACCTATCCTTCATCCAGAGTTACTGTCCAAACACAACCACTTTTTCTCCAAACACAACTTACCAAAGAAACCTCAACAAACTTCTTTCTCTTCTCTCATCAAATTCCACAAACAAAAACGGCTTCTACTACACCACAGTTGGCGAAAACAACCCCGAAAACACAGTATACGGTGCCTTCCTCTGCCGTGGAGATCTTACACCAAAAGCATGCAATGACTGTGTTTCAGTAGCATCCAAACAAATCCTTCAAAACTGTCCTAGAGAAAAAGAATCAGTTATTTGGTTAGCTGAATGCATGATACGTTACTCAAACGTTTCATTCTTCAACGTAGCTGCAGAAGTTCCTGTGCTTGAGCTCATGAACACTGGAACTGTGATGGAGCAGAGCCGGTTCATGCAACTTTTAGCTGCTACAATGAACGCTGCCGCAGTAGAGGCTGTGAATGGTGGAGGTGACAAGAAGTTTGGAACAAAAGTAGCAAATTTTTCTAGCTTTCAAACATTGTATACACTTGCACAGTGTACACCTGATTTGTCAAATTCAGGATGTGAAAAATGCCTCAAAATAGCAACTAATCAATTACCATCTTGCTGTAGTGGAAAACAAGGAGGAAGAGTTCTTATTCCTAGTTGTAATATTAGGTATGAGTTGTATCCGTTTTATCATGAGTTGAATGTGCCTGCTCCAGATGAACCGAGGCCAAATCCACAAGGTACTGTGAATTCTGATACTATCTTGCATTTTTATATCTGATCTAATTCATCTTTTACGGTCACGGAGACATAAAAAGAATTTGATTTTGATGTTGTAGCTCAGTTATCCTGAAACTTTTTTTCAAAGTCCTGCTTACTTTCCATCTTTTGCATTTATGATTCACATGAAAATTATGATTAGCTGGTGATTAAGATTAAGTTGATTGAATTTATGCAGGAAAAAAATCACGGAACTCAGTAGTGTTAATTGTTGCGATAGTAGCTCCTATTGTGATCATTTTGTTGCTTACATTGTTTGTCTGCTGGATCATATCTAAAAAGAAAAGGATAAAGTTCAACTCAGTGCCTCAAGAAAGTGGTATGGTTTGAAAATTAGCTTTGTTTTGTTATTTCTTTAGTTCCTTTTTTTTCCTTTTTTAGCATCAGTTGCAACGGATAATGAAATACATGAACAAAATAATAGAATGTTTTCTAGTTTTTTTTTTTTGAAAGTTTTAGTTAAATTATGCAATATTCTTGAGTCTGCTACATATTTTAGAGGGTTTACTTTACTATGGTAATTTTTTTTTTCCGGCAGTTGAAATCTCCAGAGTAGAATTCTTGCAATTTGATTTCGATACTATCGCAGCGGCCACAAACAACTTCAGTGGTGACAATAAATTAGGGGAAGGAGGATTTGGCGAGGTTTACAAGGTATTGGAGTACATGGATTTGATCTACATTTGGACATACATATATTTTCTTTTTTGCTTATATTAAAGACCGGAGGAAATGCTAGTTTGGAGTTTTAACTTCAGAGCTTCTTTCAGGGTATGCTATTTAATGGACAAGAGATTGCTGTGAAGAGGCTATCAAGAAGTTCTGGTCAAGGCATAGAACAATTCAAGAATGAGGTGGTTTTGGTAGCCAAACTACAACACAGAAATCTTGTTAGGATTCTTGGGTTTTGCTTGGATGGTGAAGAAAAGATGCTCATTTATGAATTCATGCCCAACAAAAGTCTAGACTATTTTCTATTTGGTGTGTGTGCATCAAAATACATTTCTTTCTTGATTAAATGCATTTTGTTCATTGAACTATGAATTAACACGTTTCACTGAGTTGAGAATTTTTCCAAATTAATGAACTATACCTTTAGACATAAAAGGTATAGTTCTATCTGCTGGGACCTTCCCAAAAACATCCAAACATGCTAGAAACCAATTTGTTTGTTAAATTTAAGTTGCTTTCATTTTATGATAATATGCAGATCCTGTAAAAGCACATCAGATAAATTGGCCAAGACGATACAAGATAATAGAAGGAATTGCGCGAGGAATGCTTTATCTTCACGAAGATTCTCGACTTAGAATCATACATCGCGATCTTAAAGCTAGTAATATATTATTAGATGAGAATTTAAATCCTAAAATTTCAGATTTTGGGATGGCAAGAATATTTGGTGTTGATCAAACCCGAGGAATCACAAACAGAGTTGTTGGAACATTGTAAGCTTCATTTCCTTACTATTTATTTTCTTAGTTTAGTTGTCCTCCACTATTATTAATTTGGTTTGAAAAAAAAGAAACAATTTGTAAGTACATTTAATATTTTGATTGAAAATATAAGAATGCTTGCATGTACATGAGCATGAGTAGTTTTTTATTGCTTCTCTAATATTAATGGCCAAACATTTTCTCTTAATTGAAATCCATGTTGTCCATACTTCATACGGATTTGTTCTCTTTACAGGGGTTACATGTCTCCGGAGTATGCAATGCACGGAGAATTTTCTATCAAAACAGATGTGTATAGCTTTGGTGTCCTTGTTCTCGAGATAATTACCGGAAAGAAGATCACATCCTTTCGCGAATCAGGCTACGCTGAGGACCTTTTGAGCTATGTGAGTTAATTTGATCCAACTCAACATTTTTTTTGTATCAAGTAATGACTGAACAAAACCCACTTGGGTTGGCCTGGTGGTATTGGCTTGGGTCTTGGGAGTGTGCTCCTCCGCAAGGTCTCAGGTTCGATTCTCTCCGGTGCCAATTTGGGTGGGCTATTTAGCTTCTTCAAAAAAAAAAAGTAATGACTGAACAAAAATTTTGGAATTGTTCATTTATTAATATTATTATTTGATTTCAAAACACTTCGTGCGGAGAAGAAATGTCTTGCGGGTTCGATTCTGCACCTAACACATCAAATGTCTCCAACCACTTTAGCCATCTCAGCTGCACGTACGGGACTGTTTCTTGATTTACACCTAAATAAACAAATGTATTCTTTTCAGGCTTGGAAAAAATGGAATGATGGGACACCATTGGAGTTACTGGACATGACATTGAGAGATTCATACTCAAGTGTTGAAGTAACAAGATGCATCCATGTTGGGTTATGTTGTGTTCAAGAAGATCCAGATCAAAGACCATCCATGCAGACAGTAGTTTTACTGCTAAGTAGCCATTCTGTTACTCTTGAACCACCTCAACGACCAGGTTATATTAGTAGCAAAACTGATCAAAGCTTTGCCACAAAAGATTTTGATAGCTCAGACAAGTCTACATCTAAAAGCCAGTCGGTTGCAGTTTCTGTTGATGATGCATCCATCACTCAGGTGTACCCTCGATAG

Protein sequence

>MS.gene91428.t1

MPHHFKFSTTAYVFFCFTLIITIIKTQAATDLSFIQSYCPNTTTFSPNTTYQRNLNKLLSLLSSNSTNKNGFYYTTVGENNPENTVYGAFLCRGDLTPKACNDCVSVASKQILQNCPREKESVIWLAECMIRYSNVSFFNVAAEVPVLELMNTGTVMEQSRFMQLLAATMNAAAVEAVNGGGDKKFGTKVANFSSFQTLYTLAQCTPDLSNSGCEKCLKIATNQLPSCCSGKQGGRVLIPSCNIRYELYPFYHELNVPAPDEPRPNPQGKKSRNSVVLIVAIVAPIVIILLLTLFVCWIISKKKRIKFNSVPQESVEISRVEFLQFDFDTIAAATNNFSGDNKLGEGGFGEVYKGMLFNGQEIAVKRLSRSSGQGIEQFKNEVVLVAKLQHRNLVRILGFCLDGEEKMLIYEFMPNKSLDYFLFDPVKAHQINWPRRYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDENLNPKISDFGMARIFGVDQTRGITNRVVGTLGYMSPEYAMHGEFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYAWKKWNDGTPLELLDMTLRDSYSSVEVTRCIHVGLCCVQEDPDQRPSMQTVVLLLSSHSVTLEPPQRPGYISSKTDQSFATKDFDSSDKSTSKSQSVAVSVDDASITQVYPR