Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55357.t1 | XP_003614006.1 | 94.6 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 2.60E-55 | 225.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55357.t1 | Q9ZQ80 | 45.6 | 68 | 34 | 1 | 27 | 91 | 68 | 135 | 4.5e-08 | 60.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55357.t1 | G7JXW3 | 94.6 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 1.8e-55 | 225.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene55357 | 0.805467 | 1.32E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene55357 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene55357 | 0.821699 | 3.51E-53 | -1.69E-46 |
| MS.gene050605 | MS.gene55357 | 0.811509 | 6.76E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene55357 | 0.891057 | 5.62E-74 | -1.69E-46 |
| MS.gene050750 | MS.gene55357 | 0.84738 | 1.20E-59 | -1.69E-46 |
| MS.gene050826 | MS.gene55357 | 0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene55357 | 0.840712 | 7.37E-58 | -1.69E-46 |
| MS.gene050987 | MS.gene55357 | 0.81244 | 4.24E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene55357 | 0.835536 | 1.58E-56 | -1.69E-46 |
| MS.gene051373 | MS.gene55357 | 0.80144 | 9.00E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene55357 | -0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene55357 | -0.817043 | 4.05E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene55357 | 0.810711 | 1.01E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene55357 | 0.801544 | 8.57E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene55357 | 0.85978 | 3.26E-63 | -1.69E-46 |
| MS.gene052389 | MS.gene55357 | 0.80109 | 1.06E-48 | -1.69E-46 |
| MS.gene052426 | MS.gene55357 | 0.829579 | 4.76E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene55357 | 0.826918 | 2.08E-54 | -1.69E-46 |
| MS.gene052675 | MS.gene55357 | 0.829664 | 4.54E-55 | -1.69E-46 |
| MS.gene052677 | MS.gene55357 | 0.838538 | 2.71E-57 | -1.69E-46 |
| MS.gene053166 | MS.gene55357 | 0.861499 | 9.83E-64 | -1.69E-46 |
| MS.gene053201 | MS.gene55357 | 0.808752 | 2.65E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene55357 | 0.805784 | 1.13E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene55357 | 0.842962 | 1.88E-58 | -1.69E-46 |
| MS.gene054405 | MS.gene55357 | 0.839246 | 1.78E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene55357 | 0.809958 | 1.46E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene55357 | 0.841021 | 6.12E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene55357 | 0.828511 | 8.63E-55 | -1.69E-46 |
| MS.gene05510 | MS.gene55357 | 0.848492 | 5.92E-60 | -1.69E-46 |
| MS.gene055225 | MS.gene55357 | 0.801911 | 7.20E-49 | -1.69E-46 |
| MS.gene055230 | MS.gene55357 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene55357 | 0.839083 | 1.96E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene55357 | 0.834534 | 2.84E-56 | -1.69E-46 |
| MS.gene055367 | MS.gene55357 | 0.838374 | 2.99E-57 | -1.69E-46 |
| MS.gene055701 | MS.gene55357 | 0.886407 | 3.51E-72 | -1.69E-46 |
| MS.gene055926 | MS.gene55357 | 0.80865 | 2.79E-50 | -1.69E-46 |
| MS.gene05595 | MS.gene55357 | 0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene55357 | 0.824043 | 9.99E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene55357 | 0.803076 | 4.14E-49 | -1.69E-46 |
| MS.gene057156 | MS.gene55357 | -0.826627 | 2.45E-54 | -1.69E-46 |
| MS.gene057394 | MS.gene55357 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene55357 | 0.810838 | 9.45E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene55357 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene55357 | 0.843067 | 1.76E-58 | -1.69E-46 |
| MS.gene059161 | MS.gene55357 | 0.856261 | 3.63E-62 | -1.69E-46 |
| MS.gene059609 | MS.gene55357 | 0.836998 | 6.74E-57 | -1.69E-46 |
| MS.gene060011 | MS.gene55357 | 0.822412 | 2.40E-53 | -1.69E-46 |
| MS.gene060246 | MS.gene55357 | 0.807109 | 5.93E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene55357 | 0.855257 | 7.12E-62 | -1.69E-46 |
| MS.gene060683 | MS.gene55357 | 0.816723 | 4.77E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene55357 | 0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene55357 | 0.815136 | 1.08E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene55357 | 0.821201 | 4.58E-53 | -1.69E-46 |
| MS.gene061002 | MS.gene55357 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene061114 | MS.gene55357 | -0.832479 | 9.23E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55357.t1 | MTR_5g043660 | 95.203 | 271 | 13 | 0 | 1 | 271 | 1 | 271 | 2.15e-102 | 299 |
| MS.gene55357.t1 | MTR_4g082830 | 38.136 | 118 | 54 | 5 | 1 | 105 | 1 | 112 | 1.83e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCGTTCCGGTGGTGGTTA+TGG | 0.248929 | 5.2:+33297461 | MS.gene55357:CDS |
| GGTTATTCTGGTGGTGGGTT+TGG | 0.263234 | 5.2:+33297269 | MS.gene55357:CDS |
| TGGATATGGTTATGTTAATT+AGG | 0.263569 | 5.2:+33297763 | MS.gene55357:CDS |
| GGTGGAAATGGTGGTTATTA+TGG | 0.263846 | 5.2:+33297290 | MS.gene55357:CDS |
| GGAGCTACTGGTGGTGGTTA+TGG | 0.301488 | 5.2:+33297431 | MS.gene55357:CDS |
| ACCAGTTGCTCCTAAAATAT+TGG | 0.302857 | 5.2:-33297144 | None:intergenic |
| TATGGTAATGAGCAAAGTTT+TGG | 0.303327 | 5.2:+33297701 | MS.gene55357:CDS |
| GGTGGTGGGTTTGGTGGAAA+TGG | 0.307504 | 5.2:+33297278 | MS.gene55357:CDS |
| GGTTATGGTGGTGGACGTTC+TGG | 0.323254 | 5.2:+33297407 | MS.gene55357:CDS |
| AACTACAGCAACAATTATTA+TGG | 0.323996 | 5.2:+33296975 | MS.gene55357:CDS |
| TATGGATATGGAGGGCGTTC+TGG | 0.326809 | 5.2:+33297674 | MS.gene55357:CDS |
| CGTTCGAGTATTGGTGGATA+TGG | 0.328623 | 5.2:+33297626 | MS.gene55357:CDS |
| TTGGCCTTGTTCACCTTGCC+AGG | 0.330282 | 5.2:-33297104 | None:intergenic |
| GGGTATGGAGGTGGACGTTT+TGG | 0.332134 | 5.2:+33297500 | MS.gene55357:CDS |
| TATTCTGGTGGTGGGTTTGG+TGG | 0.342508 | 5.2:+33297272 | MS.gene55357:CDS |
| AGTCGCTTCAGTGGTGGATA+TGG | 0.366456 | 5.2:+33297749 | MS.gene55357:CDS |
| GTCGTTCCGGTGGTGGTTAT+GGG | 0.369280 | 5.2:+33297462 | MS.gene55357:CDS |
| TCTAGTGGTGGCTATGGATA+TGG | 0.370645 | 5.2:+33297662 | MS.gene55357:CDS |
| GGAGGGCGTTCTGGTGGTTA+TGG | 0.376684 | 5.2:+33297683 | MS.gene55357:CDS |
| GAGAGTGGTTATGGACGTTT+TGG | 0.379000 | 5.2:+33297335 | MS.gene55357:CDS |
| GATCGTTCTGGTGGTGGTTA+TGG | 0.379562 | 5.2:+33297542 | MS.gene55357:CDS |
| AAGTATCATGAGAGTGGTTA+TGG | 0.384520 | 5.2:+33297326 | MS.gene55357:CDS |
| CCCACTTTCATAACGGTCAT+TGG | 0.387746 | 5.2:-33297567 | None:intergenic |
| GCCAGGTTCATGCTTGTAAA+CGG | 0.417831 | 5.2:-33297087 | None:intergenic |
| AACAATTATTATGGTGGTCA+TGG | 0.423344 | 5.2:+33296984 | MS.gene55357:CDS |
| GGACGTTCTGGTGGAGCTAC+TGG | 0.425973 | 5.2:+33297419 | MS.gene55357:CDS |
| TATGGTTCTAATGGTCGTTC+CGG | 0.426041 | 5.2:+33297449 | MS.gene55357:CDS |
| GACCGTTATGAAAGTGGGTA+TGG | 0.434054 | 5.2:+33297572 | MS.gene55357:CDS |
| AATAATAACGAGAGTGGGTA+TGG | 0.434805 | 5.2:+33297485 | MS.gene55357:CDS |
| GCCAATGACCGTTATGAAAG+TGG | 0.435951 | 5.2:+33297566 | MS.gene55357:CDS |
| GGTGGGTTTGGTGGAAATGG+TGG | 0.442531 | 5.2:+33297281 | MS.gene55357:CDS |
| TATGGTTCCGATGATCGTTC+TGG | 0.449053 | 5.2:+33297530 | MS.gene55357:CDS |
| GGTGGTGGTTATGGTTCTAA+TGG | 0.459862 | 5.2:+33297440 | MS.gene55357:CDS |
| TCTAATGGTCGTTCCGGTGG+TGG | 0.461776 | 5.2:+33297455 | MS.gene55357:CDS |
| GGTGGCAGTACTACTGGTAG+TGG | 0.462302 | 5.2:+33297356 | MS.gene55357:CDS |
| GGGCGTTCTAGTGGTGGATA+TGG | 0.471598 | 5.2:+33297593 | MS.gene55357:CDS |
| GACCGATCTAGTGGTGGTTA+TGG | 0.480464 | 5.2:+33297392 | MS.gene55357:CDS |
| TCCGATGATCGTTCTGGTGG+TGG | 0.487414 | 5.2:+33297536 | MS.gene55357:CDS |
| AGTACTACTGGTAGTGGTTA+CGG | 0.491743 | 5.2:+33297362 | MS.gene55357:CDS |
| AACCGTTCTAGTGGTGGCTA+TGG | 0.494450 | 5.2:+33297656 | MS.gene55357:CDS |
| GGAAGCGGCAACCGCAACCT+TGG | 0.496409 | 5.2:-33297123 | None:intergenic |
| GGTGAACAAGGCCAAGGTTG+CGG | 0.521243 | 5.2:+33297112 | MS.gene55357:CDS |
| TGCTCCTAAAATATTGGAAG+CGG | 0.533305 | 5.2:-33297138 | None:intergenic |
| TCCGTTTACAAGCATGAACC+TGG | 0.535564 | 5.2:+33297086 | MS.gene55357:CDS |
| AACGAGAGTGGGTATGGAGG+TGG | 0.536019 | 5.2:+33297491 | MS.gene55357:CDS |
| TCTTCCTCCGGTGTTCCTAC+CGG | 0.539541 | 5.2:+33297236 | MS.gene55357:CDS |
| TGGTGTTGTTGATGAGAGAA+AGG | 0.540028 | 5.2:+33297163 | MS.gene55357:CDS |
| GATAATAAGTATCATGAGAG+TGG | 0.542680 | 5.2:+33297320 | MS.gene55357:CDS |
| AAAATGGTTATTCTGGTGGT+GGG | 0.545962 | 5.2:+33297264 | MS.gene55357:CDS |
| TCTAGTGGTGGTTATGGTGG+TGG | 0.550300 | 5.2:+33297398 | MS.gene55357:CDS |
| TATGGGAATAATAACGAGAG+TGG | 0.553125 | 5.2:+33297479 | MS.gene55357:CDS |
| AGTCAACATGACTCTTCCTC+CGG | 0.559101 | 5.2:+33297224 | MS.gene55357:CDS |
| AGTGGGTATGGGCGTTCTAG+TGG | 0.563773 | 5.2:+33297584 | MS.gene55357:CDS |
| CGTGATAGTCGCTTCAGTGG+TGG | 0.564497 | 5.2:+33297743 | MS.gene55357:CDS |
| CACCATAACCACCACTAGAT+CGG | 0.564676 | 5.2:-33297394 | None:intergenic |
| GATGGAGGACGTTCGAGTAT+TGG | 0.567469 | 5.2:+33297617 | MS.gene55357:CDS |
| ATTATTCCCATAACCACCAC+CGG | 0.569833 | 5.2:-33297468 | None:intergenic |
| TTTGGAGGGTATGGTAGGGA+TGG | 0.569920 | 5.2:+33297719 | MS.gene55357:CDS |
| ACAATTATTATGGTGGTCAT+GGG | 0.571727 | 5.2:+33296985 | MS.gene55357:CDS |
| AGTGGTGGCTATGGATATGG+AGG | 0.573815 | 5.2:+33297665 | MS.gene55357:CDS |
| AATAACGAGAGTGGGTATGG+AGG | 0.576193 | 5.2:+33297488 | MS.gene55357:CDS |
| GCCCATACCCACTTTCATAA+CGG | 0.576314 | 5.2:-33297574 | None:intergenic |
| ACCGTTATGAAAGTGGGTAT+GGG | 0.576590 | 5.2:+33297573 | MS.gene55357:CDS |
| TGAACCTGGCAAGGTGAACA+AGG | 0.577008 | 5.2:+33297100 | MS.gene55357:CDS |
| ACCACCACCAGAACGATCAT+CGG | 0.577982 | 5.2:-33297537 | None:intergenic |
| GGTTCTAATGGTCGTTCCGG+TGG | 0.578894 | 5.2:+33297452 | MS.gene55357:CDS |
| GGGTATGGGCGTTCTAGTGG+TGG | 0.583412 | 5.2:+33297587 | MS.gene55357:CDS |
| GGATATGGAGGGCGTTCTGG+TGG | 0.586766 | 5.2:+33297677 | MS.gene55357:CDS |
| TCTGGTGGAGCTACTGGTGG+TGG | 0.587836 | 5.2:+33297425 | MS.gene55357:CDS |
| GGAGAAGAAAACCGTTCTAG+TGG | 0.590432 | 5.2:+33297647 | MS.gene55357:CDS |
| CCAATGACCGTTATGAAAGT+GGG | 0.590484 | 5.2:+33297567 | MS.gene55357:CDS |
| TCTAGTGGTGGATATGGTGA+TGG | 0.595727 | 5.2:+33297599 | MS.gene55357:CDS |
| TATGGTGGTGGACGTTCTGG+TGG | 0.597520 | 5.2:+33297410 | MS.gene55357:CDS |
| GGTCTTGATGACCGATCTAG+TGG | 0.598347 | 5.2:+33297383 | MS.gene55357:CDS |
| ATGGGAATAATAACGAGAGT+GGG | 0.598404 | 5.2:+33297480 | MS.gene55357:CDS |
| CGATCTAGTGGTGGTTATGG+TGG | 0.600744 | 5.2:+33297395 | MS.gene55357:CDS |
| GGAGGACGTTCGAGTATTGG+TGG | 0.602193 | 5.2:+33297620 | MS.gene55357:CDS |
| GAAGAAAACCGTTCTAGTGG+TGG | 0.605340 | 5.2:+33297650 | MS.gene55357:CDS |
| TGGCAAGGTGAACAAGGCCA+AGG | 0.617007 | 5.2:+33297106 | MS.gene55357:CDS |
| TTATTATGGTGGTCATGGGA+AGG | 0.617040 | 5.2:+33296989 | MS.gene55357:CDS |
| GGTCGTGATAGTCGCTTCAG+TGG | 0.617359 | 5.2:+33297740 | MS.gene55357:CDS |
| ATCCATAGCCACCACTAGAA+CGG | 0.618974 | 5.2:-33297658 | None:intergenic |
| TTACAAGCATGAACCTGGCA+AGG | 0.619824 | 5.2:+33297091 | MS.gene55357:CDS |
| ATGTATGTTGATAAAGCCGC+TGG | 0.625883 | 5.2:+33297194 | MS.gene55357:CDS |
| TACAGCAACAATTATTATGG+TGG | 0.630011 | 5.2:+33296978 | MS.gene55357:CDS |
| CGTTCTGGTGGAGCTACTGG+TGG | 0.642243 | 5.2:+33297422 | MS.gene55357:CDS |
| CTTGATGACCGATCTAGTGG+TGG | 0.649979 | 5.2:+33297386 | MS.gene55357:CDS |
| GGTGTTGTTGATGAGAGAAA+GGG | 0.652776 | 5.2:+33297164 | MS.gene55357:CDS |
| GTTGATGAGAGAAAGGGCGT+TGG | 0.655100 | 5.2:+33297170 | MS.gene55357:CDS |
| GTCTGACAAGACCTTAGCAG+AGG | 0.667574 | 5.2:-33297054 | None:intergenic |
| ATGTTGACTTAGATAACCAG+CGG | 0.672962 | 5.2:-33297210 | None:intergenic |
| CATGGGAAGGAACAGCGTCA+CGG | 0.673505 | 5.2:+33297002 | MS.gene55357:CDS |
| GGTTCCGATGATCGTTCTGG+TGG | 0.681297 | 5.2:+33297533 | MS.gene55357:CDS |
| AGTGGTGGATATGGTGATGG+AGG | 0.682421 | 5.2:+33297602 | MS.gene55357:CDS |
| TGCTAAGGTCTTGTCAGACG+CGG | 0.692843 | 5.2:+33297058 | MS.gene55357:CDS |
| GTGGTGGCTATGGATATGGA+GGG | 0.695224 | 5.2:+33297666 | MS.gene55357:CDS |
| TCGTCCGGTAGGAACACCGG+AGG | 0.697557 | 5.2:-33297240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACTACAGCAACAATTATTA+TGG | + | chr5.2:33296975-33296994 | MS.gene55357:CDS | 25.0% |
| AACAATTATTATGGTGGTCA+TGG | + | chr5.2:33296984-33297003 | MS.gene55357:CDS | 30.0% | |
| ACAATTATTATGGTGGTCAT+GGG | + | chr5.2:33296985-33297004 | MS.gene55357:CDS | 30.0% | |
| GATAATAAGTATCATGAGAG+TGG | + | chr5.2:33297320-33297339 | MS.gene55357:CDS | 30.0% | |
| TACAGCAACAATTATTATGG+TGG | + | chr5.2:33296978-33296997 | MS.gene55357:CDS | 30.0% | |
| !! | TATGGTAATGAGCAAAGTTT+TGG | + | chr5.2:33297701-33297720 | MS.gene55357:CDS | 30.0% |
| !!! | AGAATAACCATTTTTTCGTC+CGG | - | chr5.2:33297258-33297277 | None:intergenic | 30.0% |
| AAAAATGGTTATTCTGGTGG+TGG | + | chr5.2:33297263-33297282 | MS.gene55357:CDS | 35.0% | |
| AAAATGGTTATTCTGGTGGT+GGG | + | chr5.2:33297264-33297283 | MS.gene55357:CDS | 35.0% | |
| AAGTATCATGAGAGTGGTTA+TGG | + | chr5.2:33297326-33297345 | MS.gene55357:CDS | 35.0% | |
| AATAATAACGAGAGTGGGTA+TGG | + | chr5.2:33297485-33297504 | MS.gene55357:CDS | 35.0% | |
| ACCAGTTGCTCCTAAAATAT+TGG | - | chr5.2:33297147-33297166 | None:intergenic | 35.0% | |
| ATGGGAATAATAACGAGAGT+GGG | + | chr5.2:33297480-33297499 | MS.gene55357:CDS | 35.0% | |
| CGAAAAAATGGTTATTCTGG+TGG | + | chr5.2:33297260-33297279 | MS.gene55357:CDS | 35.0% | |
| GGACGAAAAAATGGTTATTC+TGG | + | chr5.2:33297257-33297276 | MS.gene55357:CDS | 35.0% | |
| TATGGGAATAATAACGAGAG+TGG | + | chr5.2:33297479-33297498 | MS.gene55357:CDS | 35.0% | |
| TGCTCCTAAAATATTGGAAG+CGG | - | chr5.2:33297141-33297160 | None:intergenic | 35.0% | |
| !! | ATGTTGACTTAGATAACCAG+CGG | - | chr5.2:33297213-33297232 | None:intergenic | 35.0% |
| !! | TCCAATATTTTAGGAGCAAC+TGG | + | chr5.2:33297143-33297162 | MS.gene55357:CDS | 35.0% |
| !!! | GTAATGAGCAAAGTTTTGGA+GGG | + | chr5.2:33297705-33297724 | MS.gene55357:CDS | 35.0% |
| ACCGTTATGAAAGTGGGTAT+GGG | + | chr5.2:33297573-33297592 | MS.gene55357:CDS | 40.0% | |
| ATTATTCCCATAACCACCAC+CGG | - | chr5.2:33297471-33297490 | None:intergenic | 40.0% | |
| CCAATGACCGTTATGAAAGT+GGG | + | chr5.2:33297567-33297586 | MS.gene55357:CDS | 40.0% | |
| CTTAGCAGAGGAAAAAAGCT+CGG | - | chr5.2:33297045-33297064 | None:intergenic | 40.0% | |
| GGTGGAAATGGTGGTTATTA+TGG | + | chr5.2:33297290-33297309 | MS.gene55357:CDS | 40.0% | |
| TTATTATGGTGGTCATGGGA+AGG | + | chr5.2:33296989-33297008 | MS.gene55357:CDS | 40.0% | |
| ! | ATGTATGTTGATAAAGCCGC+TGG | + | chr5.2:33297194-33297213 | MS.gene55357:CDS | 40.0% |
| !! | AGTACTACTGGTAGTGGTTA+CGG | + | chr5.2:33297362-33297381 | MS.gene55357:CDS | 40.0% |
| !! | GGTAATGAGCAAAGTTTTGG+AGG | + | chr5.2:33297704-33297723 | MS.gene55357:CDS | 40.0% |
| !! | GGTGTTGTTGATGAGAGAAA+GGG | + | chr5.2:33297164-33297183 | MS.gene55357:CDS | 40.0% |
| !! | GTTGCCGCTTCCAATATTTT+AGG | + | chr5.2:33297134-33297153 | MS.gene55357:CDS | 40.0% |
| !! | TATGGTTCTAATGGTCGTTC+CGG | + | chr5.2:33297449-33297468 | MS.gene55357:CDS | 40.0% |
| !! | TGGTGTTGTTGATGAGAGAA+AGG | + | chr5.2:33297163-33297182 | MS.gene55357:CDS | 40.0% |
| !!! | AAAGTTTTGGAGGGTATGGT+AGG | + | chr5.2:33297714-33297733 | MS.gene55357:CDS | 40.0% |
| !!! | AAGTTTTGGAGGGTATGGTA+GGG | + | chr5.2:33297715-33297734 | MS.gene55357:CDS | 40.0% |
| !!! | TAACCATTTTTTCGTCCGGT+AGG | - | chr5.2:33297254-33297273 | None:intergenic | 40.0% |
| AATAACGAGAGTGGGTATGG+AGG | + | chr5.2:33297488-33297507 | MS.gene55357:CDS | 45.0% | |
| AGTCAACATGACTCTTCCTC+CGG | + | chr5.2:33297224-33297243 | MS.gene55357:CDS | 45.0% | |
| ATCCATAGCCACCACTAGAA+CGG | - | chr5.2:33297661-33297680 | None:intergenic | 45.0% | |
| CACCATAACCACCACTAGAT+CGG | - | chr5.2:33297397-33297416 | None:intergenic | 45.0% | |
| CCCACTTTCATAACGGTCAT+TGG | - | chr5.2:33297570-33297589 | None:intergenic | 45.0% | |
| GAAGAAAACCGTTCTAGTGG+TGG | + | chr5.2:33297650-33297669 | MS.gene55357:CDS | 45.0% | |
| GACCGTTATGAAAGTGGGTA+TGG | + | chr5.2:33297572-33297591 | MS.gene55357:CDS | 45.0% | |
| GCCAATGACCGTTATGAAAG+TGG | + | chr5.2:33297566-33297585 | MS.gene55357:CDS | 45.0% | |
| GCCAGGTTCATGCTTGTAAA+CGG | - | chr5.2:33297090-33297109 | None:intergenic | 45.0% | |
| GCCCATACCCACTTTCATAA+CGG | - | chr5.2:33297577-33297596 | None:intergenic | 45.0% | |
| GGAGAAGAAAACCGTTCTAG+TGG | + | chr5.2:33297647-33297666 | MS.gene55357:CDS | 45.0% | |
| GTTCCTACCGGACGAAAAAA+TGG | + | chr5.2:33297248-33297267 | MS.gene55357:CDS | 45.0% | |
| TATGGTTCCGATGATCGTTC+TGG | + | chr5.2:33297530-33297549 | MS.gene55357:CDS | 45.0% | |
| TCCGTTTACAAGCATGAACC+TGG | + | chr5.2:33297086-33297105 | MS.gene55357:CDS | 45.0% | |
| TCTAGTGGTGGCTATGGATA+TGG | + | chr5.2:33297662-33297681 | MS.gene55357:CDS | 45.0% | |
| TTACAAGCATGAACCTGGCA+AGG | + | chr5.2:33297091-33297110 | MS.gene55357:CDS | 45.0% | |
| ! | AGTGGTTATGGACGTTTTGG+TGG | + | chr5.2:33297338-33297357 | MS.gene55357:CDS | 45.0% |
| ! | GAGAGTGGTTATGGACGTTT+TGG | + | chr5.2:33297335-33297354 | MS.gene55357:CDS | 45.0% |
| !! | CGTTCGAGTATTGGTGGATA+TGG | + | chr5.2:33297626-33297645 | MS.gene55357:CDS | 45.0% |
| !! | GGTGGTGGTTATGGTTCTAA+TGG | + | chr5.2:33297440-33297459 | MS.gene55357:CDS | 45.0% |
| !! | TCTAGTGGTGGATATGGTGA+TGG | + | chr5.2:33297599-33297618 | MS.gene55357:CDS | 45.0% |
| !!! | CGAGCTTTTTTCCTCTGCTA+AGG | + | chr5.2:33297043-33297062 | MS.gene55357:CDS | 45.0% |
| !!! | GAGCAAAGTTTTGGAGGGTA+TGG | + | chr5.2:33297710-33297729 | MS.gene55357:CDS | 45.0% |
| AACCGTTCTAGTGGTGGCTA+TGG | + | chr5.2:33297656-33297675 | MS.gene55357:CDS | 50.0% | |
| ACCACCACCAGAACGATCAT+CGG | - | chr5.2:33297540-33297559 | None:intergenic | 50.0% | |
| AGTGGTGGCTATGGATATGG+AGG | + | chr5.2:33297665-33297684 | MS.gene55357:CDS | 50.0% | |
| CGATCTAGTGGTGGTTATGG+TGG | + | chr5.2:33297395-33297414 | MS.gene55357:CDS | 50.0% | |
| GACCGATCTAGTGGTGGTTA+TGG | + | chr5.2:33297392-33297411 | MS.gene55357:CDS | 50.0% | |
| GATGGAGGACGTTCGAGTAT+TGG | + | chr5.2:33297617-33297636 | MS.gene55357:CDS | 50.0% | |
| GTCTGACAAGACCTTAGCAG+AGG | - | chr5.2:33297057-33297076 | None:intergenic | 50.0% | |
| GTGGTGGCTATGGATATGGA+GGG | + | chr5.2:33297666-33297685 | MS.gene55357:CDS | 50.0% | |
| TCTAGTGGTGGTTATGGTGG+TGG | + | chr5.2:33297398-33297417 | MS.gene55357:CDS | 50.0% | |
| TGAACCTGGCAAGGTGAACA+AGG | + | chr5.2:33297100-33297119 | MS.gene55357:CDS | 50.0% | |
| ! | CTTGATGACCGATCTAGTGG+TGG | + | chr5.2:33297386-33297405 | MS.gene55357:CDS | 50.0% |
| ! | GGTCTTGATGACCGATCTAG+TGG | + | chr5.2:33297383-33297402 | MS.gene55357:CDS | 50.0% |
| ! | GTTGATGAGAGAAAGGGCGT+TGG | + | chr5.2:33297170-33297189 | MS.gene55357:CDS | 50.0% |
| ! | TATGGAGGTGGACGTTTTGG+TGG | + | chr5.2:33297503-33297522 | MS.gene55357:CDS | 50.0% |
| ! | TGCTAAGGTCTTGTCAGACG+CGG | + | chr5.2:33297058-33297077 | MS.gene55357:CDS | 50.0% |
| ! | TTTGGAGGGTATGGTAGGGA+TGG | + | chr5.2:33297719-33297738 | MS.gene55357:CDS | 50.0% |
| ! | TTTTCGTCCGGTAGGAACAC+CGG | - | chr5.2:33297246-33297265 | None:intergenic | 50.0% |
| !! | AGTCGCTTCAGTGGTGGATA+TGG | + | chr5.2:33297749-33297768 | MS.gene55357:CDS | 50.0% |
| !! | AGTGGTGGATATGGTGATGG+AGG | + | chr5.2:33297602-33297621 | MS.gene55357:CDS | 50.0% |
| !! | CGTTTTGGTGGCAGTACTAC+TGG | + | chr5.2:33297350-33297369 | MS.gene55357:CDS | 50.0% |
| !! | GATCGTTCTGGTGGTGGTTA+TGG | + | chr5.2:33297542-33297561 | MS.gene55357:CDS | 50.0% |
| !! | GGTTATTCTGGTGGTGGGTT+TGG | + | chr5.2:33297269-33297288 | MS.gene55357:CDS | 50.0% |
| !! | TATGGATATGGAGGGCGTTC+TGG | + | chr5.2:33297674-33297693 | MS.gene55357:CDS | 50.0% |
| !! | TATTCTGGTGGTGGGTTTGG+TGG | + | chr5.2:33297272-33297291 | MS.gene55357:CDS | 50.0% |
| !!! | GGACGTTTTGGTGGTGGTTA+TGG | + | chr5.2:33297512-33297531 | MS.gene55357:CDS | 50.0% |
| AACGAGAGTGGGTATGGAGG+TGG | + | chr5.2:33297491-33297510 | MS.gene55357:CDS | 55.0% | |
| AGTGGGTATGGGCGTTCTAG+TGG | + | chr5.2:33297584-33297603 | MS.gene55357:CDS | 55.0% | |
| CATGGGAAGGAACAGCGTCA+CGG | + | chr5.2:33297002-33297021 | MS.gene55357:CDS | 55.0% | |
| CGTGATAGTCGCTTCAGTGG+TGG | + | chr5.2:33297743-33297762 | MS.gene55357:CDS | 55.0% | |
| GGTCGTGATAGTCGCTTCAG+TGG | + | chr5.2:33297740-33297759 | MS.gene55357:CDS | 55.0% | |
| GGTGAACAAGGCCAAGGTTG+CGG | + | chr5.2:33297112-33297131 | MS.gene55357:CDS | 55.0% | |
| GGTGGCAGTACTACTGGTAG+TGG | + | chr5.2:33297356-33297375 | MS.gene55357:CDS | 55.0% | |
| GGTTCCGATGATCGTTCTGG+TGG | + | chr5.2:33297533-33297552 | MS.gene55357:CDS | 55.0% | |
| TCCGATGATCGTTCTGGTGG+TGG | + | chr5.2:33297536-33297555 | MS.gene55357:CDS | 55.0% | |
| TCTAATGGTCGTTCCGGTGG+TGG | + | chr5.2:33297455-33297474 | MS.gene55357:CDS | 55.0% | |
| TCTTCCTCCGGTGTTCCTAC+CGG | + | chr5.2:33297236-33297255 | MS.gene55357:CDS | 55.0% | |
| TGGCAAGGTGAACAAGGCCA+AGG | + | chr5.2:33297106-33297125 | MS.gene55357:CDS | 55.0% | |
| ! | GGGTATGGAGGTGGACGTTT+TGG | + | chr5.2:33297500-33297519 | MS.gene55357:CDS | 55.0% |
| ! | GGTTCTAATGGTCGTTCCGG+TGG | + | chr5.2:33297452-33297471 | MS.gene55357:CDS | 55.0% |
| ! | GTCGTTCCGGTGGTGGTTAT+GGG | + | chr5.2:33297462-33297481 | MS.gene55357:CDS | 55.0% |
| !! | GGAGCTACTGGTGGTGGTTA+TGG | + | chr5.2:33297431-33297450 | MS.gene55357:CDS | 55.0% |
| !! | GGAGGACGTTCGAGTATTGG+TGG | + | chr5.2:33297620-33297639 | MS.gene55357:CDS | 55.0% |
| !! | GGGCGTTCTAGTGGTGGATA+TGG | + | chr5.2:33297593-33297612 | MS.gene55357:CDS | 55.0% |
| !! | GGTGGGTTTGGTGGAAATGG+TGG | + | chr5.2:33297281-33297300 | MS.gene55357:CDS | 55.0% |
| !! | GGTGGTGGGTTTGGTGGAAA+TGG | + | chr5.2:33297278-33297297 | MS.gene55357:CDS | 55.0% |
| !! | GGTTATGGTGGTGGACGTTC+TGG | + | chr5.2:33297407-33297426 | MS.gene55357:CDS | 55.0% |
| !! | TATGGTGGTGGACGTTCTGG+TGG | + | chr5.2:33297410-33297429 | MS.gene55357:CDS | 55.0% |
| !! | TTGGCCTTGTTCACCTTGCC+AGG | - | chr5.2:33297107-33297126 | None:intergenic | 55.0% |
| CGTTCTGGTGGAGCTACTGG+TGG | + | chr5.2:33297422-33297441 | MS.gene55357:CDS | 60.0% | |
| GGACGTTCTGGTGGAGCTAC+TGG | + | chr5.2:33297419-33297438 | MS.gene55357:CDS | 60.0% | |
| GGGTATGGGCGTTCTAGTGG+TGG | + | chr5.2:33297587-33297606 | MS.gene55357:CDS | 60.0% | |
| TCTGGTGGAGCTACTGGTGG+TGG | + | chr5.2:33297425-33297444 | MS.gene55357:CDS | 60.0% | |
| ! | GGTCGTTCCGGTGGTGGTTA+TGG | + | chr5.2:33297461-33297480 | MS.gene55357:CDS | 60.0% |
| !! | GGAGGGCGTTCTGGTGGTTA+TGG | + | chr5.2:33297683-33297702 | MS.gene55357:CDS | 60.0% |
| !! | GGAGGTGGACGTTTTGGTGG+TGG | + | chr5.2:33297506-33297525 | MS.gene55357:CDS | 60.0% |
| !! | GGATATGGAGGGCGTTCTGG+TGG | + | chr5.2:33297677-33297696 | MS.gene55357:CDS | 60.0% |
| GGAAGCGGCAACCGCAACCT+TGG | - | chr5.2:33297126-33297145 | None:intergenic | 65.0% | |
| TCGTCCGGTAGGAACACCGG+AGG | - | chr5.2:33297243-33297262 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 33296969 | 33297784 | 33296969 | ID=MS.gene55357 |
| chr5.2 | mRNA | 33296969 | 33297784 | 33296969 | ID=MS.gene55357.t1;Parent=MS.gene55357 |
| chr5.2 | exon | 33296969 | 33297784 | 33296969 | ID=MS.gene55357.t1.exon1;Parent=MS.gene55357.t1 |
| chr5.2 | CDS | 33296969 | 33297784 | 33296969 | ID=cds.MS.gene55357.t1;Parent=MS.gene55357.t1 |
| Gene Sequence |
| Protein sequence |
