Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25201.t1 | XP_013466557.1 | 97.1 | 209 | 6 | 0 | 1 | 209 | 1 | 209 | 7.10E-114 | 419.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25201.t1 | Q9CAB8 | 63.2 | 182 | 67 | 0 | 24 | 205 | 9 | 190 | 5.4e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25201.t1 | B7FI43 | 97.1 | 209 | 6 | 0 | 1 | 209 | 1 | 209 | 5.2e-114 | 419.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene25201 | 0.816859 | 4.45E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene25201 | 0.812196 | 4.79E-51 | -1.69E-46 |
| MS.gene049424 | MS.gene25201 | 0.808585 | 2.88E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene25201 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene050228 | MS.gene25201 | 0.803641 | 3.16E-49 | -1.69E-46 |
| MS.gene050508 | MS.gene25201 | 0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene25201 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene25201 | 0.820964 | 5.19E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene25201 | 0.801581 | 8.41E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene25201 | 0.826307 | 2.91E-54 | -1.69E-46 |
| MS.gene051368 | MS.gene25201 | 0.828802 | 7.34E-55 | -1.69E-46 |
| MS.gene051370 | MS.gene25201 | 0.835925 | 1.26E-56 | -1.69E-46 |
| MS.gene051373 | MS.gene25201 | 0.816059 | 6.72E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene25201 | 0.825988 | 3.47E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene25201 | 0.856898 | 2.36E-62 | -1.69E-46 |
| MS.gene052309 | MS.gene25201 | -0.814757 | 1.31E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene25201 | 0.841057 | 5.98E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene25201 | 0.810231 | 1.28E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene25201 | 0.807042 | 6.13E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene25201 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene052500 | MS.gene25201 | 0.806101 | 9.69E-50 | -1.69E-46 |
| MS.gene052502 | MS.gene25201 | 0.80999 | 1.44E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene25201 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene25201 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene25201 | 0.807977 | 3.88E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene25201 | 0.827018 | 1.97E-54 | -1.69E-46 |
| MS.gene053188 | MS.gene25201 | 0.816293 | 5.96E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene25201 | 0.825451 | 4.66E-54 | -1.69E-46 |
| MS.gene054405 | MS.gene25201 | 0.817923 | 2.56E-52 | -1.69E-46 |
| MS.gene054537 | MS.gene25201 | 0.824832 | 6.52E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene25201 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene25201 | 0.824043 | 9.99E-54 | -1.69E-46 |
| MS.gene055225 | MS.gene25201 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene25201 | 0.824065 | 9.87E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene25201 | 0.85319 | 2.81E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene25201 | 0.842499 | 2.49E-58 | -1.69E-46 |
| MS.gene056979 | MS.gene25201 | 0.809745 | 1.63E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene25201 | 0.805051 | 1.61E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene25201 | 0.802612 | 5.16E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene25201 | 0.802392 | 5.73E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene25201 | 0.811184 | 7.95E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene25201 | 0.802483 | 5.49E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene25201 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene059710 | MS.gene25201 | 0.836529 | 8.87E-57 | -1.69E-46 |
| MS.gene060246 | MS.gene25201 | 0.808083 | 3.69E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene25201 | 0.813448 | 2.55E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene25201 | 0.817292 | 3.56E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene25201 | -0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene25201 | -0.805284 | 1.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25201.t1 | MTR_1g032160 | 97.129 | 209 | 6 | 0 | 1 | 209 | 1 | 209 | 1.70e-153 | 424 |
| MS.gene25201.t1 | MTR_1g032190 | 61.463 | 205 | 67 | 1 | 1 | 205 | 1 | 193 | 1.34e-89 | 261 |
| MS.gene25201.t1 | MTR_1g032190 | 61.463 | 205 | 67 | 1 | 1 | 205 | 33 | 225 | 3.38e-89 | 262 |
| MS.gene25201.t1 | MTR_1g073640 | 49.708 | 171 | 86 | 0 | 30 | 200 | 59 | 229 | 1.60e-57 | 182 |
| MS.gene25201.t1 | MTR_7g115490 | 48.538 | 171 | 88 | 0 | 30 | 200 | 61 | 231 | 2.26e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25201.t1 | AT1G70680 | 63.187 | 182 | 67 | 0 | 24 | 205 | 9 | 190 | 1.41e-81 | 241 |
| MS.gene25201.t1 | AT1G70670 | 59.890 | 182 | 73 | 0 | 26 | 207 | 10 | 191 | 2.16e-79 | 236 |
| MS.gene25201.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 2 | 168 | 3.13e-69 | 209 |
| MS.gene25201.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 28 | 194 | 4.03e-69 | 210 |
| MS.gene25201.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 37 | 203 | 5.14e-69 | 210 |
| MS.gene25201.t1 | AT1G70680 | 62.500 | 152 | 57 | 0 | 54 | 205 | 5 | 156 | 2.68e-64 | 196 |
| MS.gene25201.t1 | AT4G26740 | 46.591 | 176 | 90 | 1 | 29 | 200 | 57 | 232 | 1.15e-54 | 174 |
| MS.gene25201.t1 | AT5G55240 | 45.455 | 187 | 98 | 1 | 22 | 204 | 49 | 235 | 3.28e-54 | 173 |
| MS.gene25201.t1 | AT2G33380 | 45.562 | 169 | 92 | 0 | 33 | 201 | 60 | 228 | 6.99e-52 | 167 |
| MS.gene25201.t1 | AT1G23240 | 59.055 | 127 | 52 | 0 | 33 | 159 | 37 | 163 | 8.06e-52 | 165 |
| MS.gene25201.t1 | AT1G23250 | 48.252 | 143 | 71 | 2 | 57 | 199 | 20 | 159 | 1.09e-40 | 137 |
| MS.gene25201.t1 | AT1G23250 | 48.252 | 143 | 71 | 2 | 57 | 199 | 50 | 189 | 5.43e-40 | 136 |
| MS.gene25201.t1 | AT2G33380 | 38.462 | 169 | 62 | 2 | 33 | 201 | 60 | 186 | 1.30e-37 | 129 |
| MS.gene25201.t1 | AT5G29560 | 48.148 | 108 | 56 | 0 | 33 | 140 | 63 | 170 | 3.41e-32 | 115 |
Find 39 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAGCAATGCGTGAAAT+TGG | 0.210121 | 1.3:-17159393 | MS.gene25201:intron |
| AAGCAAACCATTCTTGTCTT+TGG | 0.246204 | 1.3:+17157106 | None:intergenic |
| CTTGTTTGAATTGCTGAAAA+AGG | 0.298907 | 1.3:-17157048 | MS.gene25201:CDS |
| TGGATATTCTTAACTTCAAT+TGG | 0.307296 | 1.3:+17157874 | None:intergenic |
| TCATCATATGTTAAAGCATT+TGG | 0.356094 | 1.3:+17157628 | None:intergenic |
| CACTCCCATGTTTGCCCCGT+TGG | 0.374563 | 1.3:+17157854 | None:intergenic |
| AACCTTCCTTTGACATCTTT+AGG | 0.422579 | 1.3:+17157574 | None:intergenic |
| TTCTTGTTATCATATGATAC+AGG | 0.422673 | 1.3:+17159956 | None:intergenic |
| TCATATGTAGGATTTGTTGA+TGG | 0.435999 | 1.3:-17159835 | MS.gene25201:intron |
| CAACAGCAATGCGTGAAATT+GGG | 0.440569 | 1.3:-17159392 | MS.gene25201:intron |
| TTCTTTGACTTGAATCATGA+TGG | 0.443395 | 1.3:-17159754 | MS.gene25201:CDS |
| GGGTTGGTAGCTTTGTTGAA+TGG | 0.445777 | 1.3:-17157148 | MS.gene25201:CDS |
| AATATCCAACGGGGCAAACA+TGG | 0.456851 | 1.3:-17157859 | MS.gene25201:CDS |
| TGAAGTTAAGAATATCCAAC+GGG | 0.458555 | 1.3:-17157869 | MS.gene25201:CDS |
| GTTTGTTGCATCTAAATTTG+AGG | 0.466576 | 1.3:-17157680 | MS.gene25201:CDS |
| ATGATGGTGTTATTTATCCA+TGG | 0.477891 | 1.3:-17159738 | MS.gene25201:CDS |
| AAACTTGCCAAAGACAAGAA+TGG | 0.495506 | 1.3:-17157113 | MS.gene25201:CDS |
| TATCCATGGGAGACTTTCCA+AGG | 0.507683 | 1.3:-17159724 | MS.gene25201:intron |
| GGCAAACATGGGAGTGACAC+TGG | 0.512670 | 1.3:-17157847 | MS.gene25201:CDS |
| AGGATTTGTTGATGGTATTG+AGG | 0.529818 | 1.3:-17159827 | MS.gene25201:CDS |
| ACAATCCGAGGAGTTTATGA+TGG | 0.535320 | 1.3:-17157074 | MS.gene25201:CDS |
| TGATGGTGTTATTTATCCAT+GGG | 0.540816 | 1.3:-17159737 | MS.gene25201:CDS |
| GCAATGCGTGAAATTGGGAG+TGG | 0.555445 | 1.3:-17159387 | MS.gene25201:CDS |
| AGCTTCCATCATAAACTCCT+CGG | 0.564407 | 1.3:+17157069 | None:intergenic |
| AGAGAGCCTAAAGATGTCAA+AGG | 0.568594 | 1.3:-17157580 | MS.gene25201:CDS |
| AGCCTAAAGATGTCAAAGGA+AGG | 0.598867 | 1.3:-17157576 | MS.gene25201:intron |
| CAATGCGTGAAATTGGGAGT+GGG | 0.601313 | 1.3:-17159386 | MS.gene25201:CDS |
| ATACCTTGGAAAGTCTCCCA+TGG | 0.606392 | 1.3:+17159721 | None:intergenic |
| ACTGGAGCATATGATTCTGA+AGG | 0.615429 | 1.3:-17157829 | MS.gene25201:CDS |
| ATATCCAACGGGGCAAACAT+GGG | 0.618740 | 1.3:-17157858 | MS.gene25201:CDS |
| CAGGGCGAGTTGTCTGACTG+AGG | 0.618929 | 1.3:+17159322 | None:intergenic |
| TTGAAGTTAAGAATATCCAA+CGG | 0.624281 | 1.3:-17157870 | MS.gene25201:CDS |
| GATAACAAGAAACTAGAGGA+AGG | 0.624914 | 1.3:-17159944 | MS.gene25201:intron |
| AGGGCGAGTTGTCTGACTGA+GGG | 0.633873 | 1.3:+17159323 | None:intergenic |
| GAGCATATGATTCTGAAGGA+AGG | 0.661835 | 1.3:-17157825 | MS.gene25201:intron |
| ATATGATAACAAGAAACTAG+AGG | 0.670209 | 1.3:-17159948 | MS.gene25201:CDS |
| CTTCAGAAAGAAACAATCCG+AGG | 0.674979 | 1.3:-17157086 | MS.gene25201:CDS |
| AATGCGTGAAATTGGGAGTG+GGG | 0.694422 | 1.3:-17159385 | MS.gene25201:CDS |
| GAAGTTAAGAATATCCAACG+GGG | 0.810368 | 1.3:-17157868 | MS.gene25201:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAAATAATAATATTT+TGG | - | chr1.3:17158578-17158597 | MS.gene25201:intron | 0.0% |
| !! | AAAACTAAAAAAATATTACT+TGG | - | chr1.3:17158184-17158203 | MS.gene25201:intron | 10.0% |
| !! | AAAGATTATATCTTATAATT+TGG | - | chr1.3:17158423-17158442 | MS.gene25201:intron | 10.0% |
| !! | GTATTAAAGAAAAAAATTAT+AGG | + | chr1.3:17159218-17159237 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAAATACCT+TGG | + | chr1.3:17157286-17157305 | None:intergenic | 10.0% |
| !! | AATATATAGACCAAATATAT+TGG | - | chr1.3:17158152-17158171 | MS.gene25201:intron | 15.0% |
| !! | GAAAAATAATTAATTGTTTG+TGG | + | chr1.3:17158775-17158794 | None:intergenic | 15.0% |
| !! | TAAACAATTAATTGTGTATA+TGG | - | chr1.3:17159502-17159521 | MS.gene25201:intron | 15.0% |
| !! | TATTGAATAACCAATATATT+TGG | + | chr1.3:17158165-17158184 | None:intergenic | 15.0% |
| !! | TTAAATTTCAATTCATATGT+AGG | - | chr1.3:17157143-17157162 | MS.gene25201:CDS | 15.0% |
| !!! | AATAACAGTTAAATTTTGTA+AGG | - | chr1.3:17157525-17157544 | MS.gene25201:intron | 15.0% |
| !!! | TTTTTTTTTTCTTCTTGAAT+TGG | - | chr1.3:17157764-17157783 | MS.gene25201:intron | 15.0% |
| !! | ACTTGAAAAGATTAATACAT+TGG | - | chr1.3:17157502-17157521 | MS.gene25201:intron | 20.0% |
| !! | AGTTATTATGCTTCATAATT+AGG | - | chr1.3:17157382-17157401 | MS.gene25201:intron | 20.0% |
| !! | CATTTATTAAATGATGTATG+TGG | + | chr1.3:17159541-17159560 | None:intergenic | 20.0% |
| !! | TACTTATGCTATCATTTATA+TGG | - | chr1.3:17159055-17159074 | MS.gene25201:intron | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr1.3:17159700-17159719 | MS.gene25201:intron | 20.0% |
| !!! | AAATTTTGTAAGGAGAAAAA+AGG | - | chr1.3:17157535-17157554 | MS.gene25201:intron | 20.0% |
| !!! | AAGGTGAAACTTTAATTTAT+AGG | - | chr1.3:17157970-17157989 | MS.gene25201:intron | 20.0% |
| !!! | ACATCTTATAATTTTCTTCT+CGG | - | chr1.3:17157707-17157726 | MS.gene25201:intron | 20.0% |
| !!! | ACTCTCTTTTAAAATACTTT+TGG | + | chr1.3:17158710-17158729 | None:intergenic | 20.0% |
| !!! | AGCAATTTTGATATTTTTTC+TGG | - | chr1.3:17157923-17157942 | MS.gene25201:intron | 20.0% |
| !!! | ATATTTTGGTCTCAAAATTT+TGG | - | chr1.3:17158592-17158611 | MS.gene25201:intron | 20.0% |
| !!! | CTCTCTTTTAAAATACTTTT+GGG | + | chr1.3:17158709-17158728 | None:intergenic | 20.0% |
| !!! | TTCATAAGTCAAGTTTTTAT+TGG | + | chr1.3:17158920-17158939 | None:intergenic | 20.0% |
| ! | AAGTAATGTTCGTTTAAAAG+AGG | + | chr1.3:17158861-17158880 | None:intergenic | 25.0% |
| ! | AATTAATACTCGTATATGCA+GGG | - | chr1.3:17159822-17159841 | MS.gene25201:CDS | 25.0% |
| ! | ACTCAAAAAAGATATTTGAG+CGG | - | chr1.3:17158293-17158312 | MS.gene25201:intron | 25.0% |
| ! | AGAAAAAAGGAATTTGATAG+TGG | - | chr1.3:17157548-17157567 | MS.gene25201:intron | 25.0% |
| ! | ATATGATAACAAGAAACTAG+AGG | - | chr1.3:17157042-17157061 | MS.gene25201:CDS | 25.0% |
| ! | ATTAATGTTATACGACCTTA+TGG | + | chr1.3:17158888-17158907 | None:intergenic | 25.0% |
| ! | ATTACTTGAGCTAAACTATT+TGG | + | chr1.3:17157338-17157357 | None:intergenic | 25.0% |
| ! | TAATTAATACTCGTATATGC+AGG | - | chr1.3:17159821-17159840 | MS.gene25201:CDS | 25.0% |
| ! | TATGAAGCATAATAACTACT+TGG | + | chr1.3:17157379-17157398 | None:intergenic | 25.0% |
| ! | TCTTAACATGTGAATTGTTA+TGG | + | chr1.3:17157480-17157499 | None:intergenic | 25.0% |
| ! | TGGATATTCTTAACTTCAAT+TGG | + | chr1.3:17159119-17159138 | None:intergenic | 25.0% |
| ! | TTAACTTCAATTGGAAAAAG+TGG | + | chr1.3:17159110-17159129 | None:intergenic | 25.0% |
| ! | TTCAATTAGACATCGAATTT+GGG | + | chr1.3:17157424-17157443 | None:intergenic | 25.0% |
| ! | TTGAAGTTAAGAATATCCAA+CGG | - | chr1.3:17159120-17159139 | MS.gene25201:intron | 25.0% |
| !! | CTCTTTTACCTCTAATTTAT+AGG | + | chr1.3:17158515-17158534 | None:intergenic | 25.0% |
| !! | TCATCATATGTTAAAGCATT+TGG | + | chr1.3:17159365-17159384 | None:intergenic | 25.0% |
| !! | TCATCGAATCAATCTATTTT+TGG | + | chr1.3:17158274-17158293 | None:intergenic | 25.0% |
| !! | TGAAGAACATTTTCATGATT+TGG | + | chr1.3:17157203-17157222 | None:intergenic | 25.0% |
| !! | TTCTTGTTATCATATGATAC+AGG | + | chr1.3:17157037-17157056 | None:intergenic | 25.0% |
| !! | TTTTTCTTCTTGAATTGGAT+AGG | - | chr1.3:17157769-17157788 | MS.gene25201:intron | 25.0% |
| !!! | AACATTTTCATGATTTGGAA+TGG | + | chr1.3:17157198-17157217 | None:intergenic | 25.0% |
| !!! | ACATTTTCATGATTTGGAAT+GGG | + | chr1.3:17157197-17157216 | None:intergenic | 25.0% |
| !!! | AGTCAAGTTTTTATTGGTTA+AGG | + | chr1.3:17158914-17158933 | None:intergenic | 25.0% |
| !!! | GTCAAGTTTTTATTGGTTAA+GGG | + | chr1.3:17158913-17158932 | None:intergenic | 25.0% |
| AAGAGAGTCTTAAGGATATA+TGG | - | chr1.3:17158530-17158549 | MS.gene25201:intron | 30.0% | |
| AATATACTCAAAGACATAGC+TGG | + | chr1.3:17158657-17158676 | None:intergenic | 30.0% | |
| CTATGACTTATGGACAATTA+AGG | - | chr1.3:17157951-17157970 | MS.gene25201:intron | 30.0% | |
| CTTGTTTGAATTGCTGAAAA+AGG | - | chr1.3:17159942-17159961 | MS.gene25201:intron | 30.0% | |
| GTCATAAAGAGATTCTTACA+GGG | + | chr1.3:17157689-17157708 | None:intergenic | 30.0% | |
| GTTCAATTAGACATCGAATT+TGG | + | chr1.3:17157425-17157444 | None:intergenic | 30.0% | |
| TATGCTTCATAATTAGGTCA+AGG | - | chr1.3:17157388-17157407 | MS.gene25201:intron | 30.0% | |
| TATTTACATAAGCGTCTTAG+TGG | + | chr1.3:17158558-17158577 | None:intergenic | 30.0% | |
| TGAAGTTAAGAATATCCAAC+GGG | - | chr1.3:17159121-17159140 | MS.gene25201:intron | 30.0% | |
| TGTCATAAAGAGATTCTTAC+AGG | + | chr1.3:17157690-17157709 | None:intergenic | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr1.3:17159667-17159686 | None:intergenic | 30.0% | |
| TTCATAATTAGGTCAAGGTT+AGG | - | chr1.3:17157393-17157412 | MS.gene25201:intron | 30.0% | |
| ! | GTTTGTTGCATCTAAATTTG+AGG | - | chr1.3:17159310-17159329 | MS.gene25201:intron | 30.0% |
| ! | TATATGGTTCTTGTTGTGTA+GGG | - | chr1.3:17159071-17159090 | MS.gene25201:intron | 30.0% |
| ! | TTATATGGTTCTTGTTGTGT+AGG | - | chr1.3:17159070-17159089 | MS.gene25201:intron | 30.0% |
| ! | TTTTGGTCTCAAAATTTTGG+AGG | - | chr1.3:17158595-17158614 | MS.gene25201:intron | 30.0% |
| !! | ATGATGGTGTTATTTATCCA+TGG | - | chr1.3:17157252-17157271 | MS.gene25201:intron | 30.0% |
| !! | GAACATTACTTTTGTCCATA+AGG | - | chr1.3:17158870-17158889 | MS.gene25201:intron | 30.0% |
| !! | GTTTTAGTAACCTTAGTCAT+GGG | + | chr1.3:17158736-17158755 | None:intergenic | 30.0% |
| !! | TCATATGTAGGATTTGTTGA+TGG | - | chr1.3:17157155-17157174 | MS.gene25201:intron | 30.0% |
| !! | TGATGGTGTTATTTATCCAT+GGG | - | chr1.3:17157253-17157272 | MS.gene25201:intron | 30.0% |
| !! | TTCTTTGACTTGAATCATGA+TGG | - | chr1.3:17157236-17157255 | MS.gene25201:intron | 30.0% |
| !!! | AAGACATAGCTGGTTTTTAA+AGG | + | chr1.3:17158647-17158666 | None:intergenic | 30.0% |
| !!! | TGGTTGAAACTGAAGTTTTT+TGG | + | chr1.3:17158254-17158273 | None:intergenic | 30.0% |
| AAACTTGCCAAAGACAAGAA+TGG | - | chr1.3:17159877-17159896 | MS.gene25201:intron | 35.0% | |
| AACCTTCCTTTGACATCTTT+AGG | + | chr1.3:17159419-17159438 | None:intergenic | 35.0% | |
| AAGCAAACCATTCTTGTCTT+TGG | + | chr1.3:17159887-17159906 | None:intergenic | 35.0% | |
| ACTAAGGTTACTAAAACCCT+AGG | - | chr1.3:17158739-17158758 | MS.gene25201:intron | 35.0% | |
| AGAGGTAAAAGAGAGTCTTA+AGG | - | chr1.3:17158522-17158541 | MS.gene25201:intron | 35.0% | |
| CAAATTATTAGTTGTGTCGG+CGG | - | chr1.3:17159703-17159722 | MS.gene25201:intron | 35.0% | |
| CAATTGGAAAAAGTGGAGAT+GGG | + | chr1.3:17159103-17159122 | None:intergenic | 35.0% | |
| GAAGTTAAGAATATCCAACG+GGG | - | chr1.3:17159122-17159141 | MS.gene25201:intron | 35.0% | |
| GATAACAAGAAACTAGAGGA+AGG | - | chr1.3:17157046-17157065 | MS.gene25201:CDS | 35.0% | |
| TATTTGAGCGGTGAAGTAAA+AGG | - | chr1.3:17158305-17158324 | MS.gene25201:intron | 35.0% | |
| TCAATTGGAAAAAGTGGAGA+TGG | + | chr1.3:17159104-17159123 | None:intergenic | 35.0% | |
| TCTGGTTGAACTATGACTTA+TGG | - | chr1.3:17157941-17157960 | MS.gene25201:intron | 35.0% | |
| TGAGCTAAACTATTTGGTCA+TGG | + | chr1.3:17157332-17157351 | None:intergenic | 35.0% | |
| ! | AAATTATTAGTTGTGTCGGC+GGG | - | chr1.3:17159704-17159723 | MS.gene25201:intron | 35.0% |
| ! | TTGTGGATCTAAAACTCCTA+GGG | + | chr1.3:17158758-17158777 | None:intergenic | 35.0% |
| ! | TTTGTGGATCTAAAACTCCT+AGG | + | chr1.3:17158759-17158778 | None:intergenic | 35.0% |
| !! | AGGATTTGTTGATGGTATTG+AGG | - | chr1.3:17157163-17157182 | MS.gene25201:intron | 35.0% |
| !! | GGTTTTAGTAACCTTAGTCA+TGG | + | chr1.3:17158737-17158756 | None:intergenic | 35.0% |
| AATACTCGTATATGCAGGGT+TGG | - | chr1.3:17159826-17159845 | MS.gene25201:CDS | 40.0% | |
| ACAACAGCAATGCGTGAAAT+TGG | - | chr1.3:17157597-17157616 | MS.gene25201:CDS | 40.0% | |
| ACAATCCGAGGAGTTTATGA+TGG | - | chr1.3:17159916-17159935 | MS.gene25201:intron | 40.0% | |
| ACTGGAGCATATGATTCTGA+AGG | - | chr1.3:17159161-17159180 | MS.gene25201:intron | 40.0% | |
| AGAGAGCCTAAAGATGTCAA+AGG | - | chr1.3:17159410-17159429 | MS.gene25201:intron | 40.0% | |
| AGCCTAAAGATGTCAAAGGA+AGG | - | chr1.3:17159414-17159433 | MS.gene25201:intron | 40.0% | |
| AGCTTCCATCATAAACTCCT+CGG | + | chr1.3:17159924-17159943 | None:intergenic | 40.0% | |
| ATCCGATCATCTATGAAGCA+CGG | + | chr1.3:17159767-17159786 | None:intergenic | 40.0% | |
| ATCCGTGCTTCATAGATGAT+CGG | - | chr1.3:17159762-17159781 | MS.gene25201:CDS | 40.0% | |
| CAAAATTGCTAGCTCAAACG+CGG | + | chr1.3:17157913-17157932 | None:intergenic | 40.0% | |
| CAACAGCAATGCGTGAAATT+GGG | - | chr1.3:17157598-17157617 | MS.gene25201:CDS | 40.0% | |
| CATCAAGATATCCTCATTCG+TGG | + | chr1.3:17158342-17158361 | None:intergenic | 40.0% | |
| CCAACTCTCACTGAACATAT+AGG | - | chr1.3:17158979-17158998 | MS.gene25201:intron | 40.0% | |
| CCTATATGTTCAGTGAGAGT+TGG | + | chr1.3:17158982-17159001 | None:intergenic | 40.0% | |
| CTTCAGAAAGAAACAATCCG+AGG | - | chr1.3:17159904-17159923 | MS.gene25201:intron | 40.0% | |
| TAGTGACCAGCTATAAAGCA+CGG | - | chr1.3:17159589-17159608 | MS.gene25201:intron | 40.0% | |
| TCATCTATGAAGCACGGATA+CGG | + | chr1.3:17159761-17159780 | None:intergenic | 40.0% | |
| TGAAAATAGCTCAAGAGAGC+TGG | + | chr1.3:17158622-17158641 | None:intergenic | 40.0% | |
| ! | GAGCATATGATTCTGAAGGA+AGG | - | chr1.3:17159165-17159184 | MS.gene25201:intron | 40.0% |
| !! | GTAATTACAAGTGTCGGTGT+CGG | + | chr1.3:17159661-17159680 | None:intergenic | 40.0% |
| !!! | AGCTGCTATTTTCATCAACG+TGG | - | chr1.3:17157644-17157663 | MS.gene25201:CDS | 40.0% |
| AAGTGCAAATGCCACGAATG+AGG | - | chr1.3:17158328-17158347 | MS.gene25201:intron | 45.0% | |
| AATATCCAACGGGGCAAACA+TGG | - | chr1.3:17159131-17159150 | MS.gene25201:intron | 45.0% | |
| AATGCGTGAAATTGGGAGTG+GGG | - | chr1.3:17157605-17157624 | MS.gene25201:CDS | 45.0% | |
| AGTTATGTCACCTTGCGTGT+AGG | - | chr1.3:17158483-17158502 | MS.gene25201:intron | 45.0% | |
| ATACCTTGGAAAGTCTCCCA+TGG | + | chr1.3:17157272-17157291 | None:intergenic | 45.0% | |
| ATATCCAACGGGGCAAACAT+GGG | - | chr1.3:17159132-17159151 | MS.gene25201:intron | 45.0% | |
| CAATGCGTGAAATTGGGAGT+GGG | - | chr1.3:17157604-17157623 | MS.gene25201:CDS | 45.0% | |
| GGGCGGTTCCTATAAATTAG+AGG | - | chr1.3:17158504-17158523 | MS.gene25201:intron | 45.0% | |
| GTGCTTCATAGATGATCGGA+TGG | - | chr1.3:17159766-17159785 | MS.gene25201:CDS | 45.0% | |
| GTTATGTCACCTTGCGTGTA+GGG | - | chr1.3:17158484-17158503 | MS.gene25201:intron | 45.0% | |
| TATAAAGCACGGACACTCCT+CGG | - | chr1.3:17159600-17159619 | MS.gene25201:intron | 45.0% | |
| TATCCATGGGAGACTTTCCA+AGG | - | chr1.3:17157266-17157285 | MS.gene25201:intron | 45.0% | |
| !! | GGGTTGGTAGCTTTGTTGAA+TGG | - | chr1.3:17159842-17159861 | MS.gene25201:intron | 45.0% |
| !!! | AGTAAAAATATATATTTTTT+AGG | - | chr1.3:17159288-17159307 | MS.gene25201:intron | 5.0% |
| !!! | TAAAAAATATATATTTTTAC+TGG | + | chr1.3:17159289-17159308 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTACATAA+AGG | - | chr1.3:17157291-17157310 | MS.gene25201:intron | 5.0% |
| ACACGACATGTGTTCGACAC+CGG | + | chr1.3:17159638-17159657 | None:intergenic | 50.0% | |
| AGAGAGTCGTCCCATGACTA+AGG | - | chr1.3:17158723-17158742 | MS.gene25201:intron | 50.0% | |
| ATCGGATGGTGTACGATGCA+TGG | - | chr1.3:17159780-17159799 | MS.gene25201:CDS | 50.0% | |
| GAGTGTCCGTGCTTTATAGC+TGG | + | chr1.3:17159598-17159617 | None:intergenic | 50.0% | |
| GCAATGCGTGAAATTGGGAG+TGG | - | chr1.3:17157603-17157622 | MS.gene25201:CDS | 50.0% | |
| AGGGCGAGTTGTCTGACTGA+GGG | + | chr1.3:17157670-17157689 | None:intergenic | 55.0% | |
| ATGAAGCACGGATACGGACG+TGG | + | chr1.3:17159755-17159774 | None:intergenic | 55.0% | |
| ATGTCACCTTGCGTGTAGGG+CGG | - | chr1.3:17158487-17158506 | MS.gene25201:intron | 55.0% | |
| CACGACATGTGTTCGACACC+GGG | + | chr1.3:17159637-17159656 | None:intergenic | 55.0% | |
| CGTGGACACTGGACACAACA+CGG | + | chr1.3:17159737-17159756 | None:intergenic | 55.0% | |
| GGCAAACATGGGAGTGACAC+TGG | - | chr1.3:17159143-17159162 | MS.gene25201:intron | 55.0% | |
| ACGGATACGGACGTGGACAC+TGG | + | chr1.3:17159748-17159767 | None:intergenic | 60.0% | |
| CACTCCCATGTTTGCCCCGT+TGG | + | chr1.3:17159139-17159158 | None:intergenic | 60.0% | |
| CAGGGCGAGTTGTCTGACTG+AGG | + | chr1.3:17157671-17157690 | None:intergenic | 60.0% | |
| TAGGAACCGCCCTACACGCA+AGG | + | chr1.3:17158496-17158515 | None:intergenic | 60.0% | |
| AGCACGGACACTCCTCGGAC+TGG | - | chr1.3:17159605-17159624 | MS.gene25201:intron | 65.0% | |
| GCACGGACACTCCTCGGACT+GGG | - | chr1.3:17159606-17159625 | MS.gene25201:intron | 65.0% | |
| ! | TCCTCGGACTGGGCGTGTCC+CGG | - | chr1.3:17159616-17159635 | MS.gene25201:intron | 70.0% |
| ACCGGGACACGCCCAGTCCG+AGG | + | chr1.3:17159620-17159639 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 17157019 | 17159993 | 17157019 | ID=MS.gene25201 |
| chr1.3 | mRNA | 17157019 | 17159993 | 17157019 | ID=MS.gene25201.t1;Parent=MS.gene25201 |
| chr1.3 | exon | 17159945 | 17159993 | 17159945 | ID=MS.gene25201.t1.exon1;Parent=MS.gene25201.t1 |
| chr1.3 | CDS | 17159945 | 17159993 | 17159945 | ID=cds.MS.gene25201.t1;Parent=MS.gene25201.t1 |
| chr1.3 | exon | 17159725 | 17159847 | 17159725 | ID=MS.gene25201.t1.exon2;Parent=MS.gene25201.t1 |
| chr1.3 | CDS | 17159725 | 17159847 | 17159725 | ID=cds.MS.gene25201.t1;Parent=MS.gene25201.t1 |
| chr1.3 | exon | 17159323 | 17159408 | 17159323 | ID=MS.gene25201.t1.exon3;Parent=MS.gene25201.t1 |
| chr1.3 | CDS | 17159323 | 17159408 | 17159323 | ID=cds.MS.gene25201.t1;Parent=MS.gene25201.t1 |
| chr1.3 | exon | 17157826 | 17157920 | 17157826 | ID=MS.gene25201.t1.exon4;Parent=MS.gene25201.t1 |
| chr1.3 | CDS | 17157826 | 17157920 | 17157826 | ID=cds.MS.gene25201.t1;Parent=MS.gene25201.t1 |
| chr1.3 | exon | 17157577 | 17157702 | 17157577 | ID=MS.gene25201.t1.exon5;Parent=MS.gene25201.t1 |
| chr1.3 | CDS | 17157577 | 17157702 | 17157577 | ID=cds.MS.gene25201.t1;Parent=MS.gene25201.t1 |
| chr1.3 | exon | 17157019 | 17157169 | 17157019 | ID=MS.gene25201.t1.exon6;Parent=MS.gene25201.t1 |
| chr1.3 | CDS | 17157019 | 17157169 | 17157019 | ID=cds.MS.gene25201.t1;Parent=MS.gene25201.t1 |
| Gene Sequence |
| Protein sequence |
