Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83082.t1 | XP_013466557.1 | 96.7 | 209 | 7 | 0 | 1 | 209 | 1 | 209 | 2.10E-113 | 418.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83082.t1 | Q9CAB8 | 63.2 | 182 | 67 | 0 | 24 | 205 | 9 | 190 | 5.4e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83082.t1 | B7FI43 | 96.7 | 209 | 7 | 0 | 1 | 209 | 1 | 209 | 1.5e-113 | 418.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene83082 | 0.821278 | 4.40E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene83082 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene049424 | MS.gene83082 | 0.806688 | 7.28E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene83082 | 0.8032 | 3.90E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene83082 | 0.819048 | 1.43E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene83082 | 0.816008 | 6.90E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene83082 | 0.822141 | 2.78E-53 | -1.69E-46 |
| MS.gene051368 | MS.gene83082 | 0.825899 | 3.64E-54 | -1.69E-46 |
| MS.gene051370 | MS.gene83082 | 0.838223 | 3.27E-57 | -1.69E-46 |
| MS.gene051373 | MS.gene83082 | 0.823081 | 1.68E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene83082 | 0.827429 | 1.57E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene83082 | 0.855091 | 7.96E-62 | -1.69E-46 |
| MS.gene052309 | MS.gene83082 | -0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene83082 | 0.839099 | 1.94E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene83082 | 0.809652 | 1.70E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene83082 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene83082 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene83082 | 0.823516 | 1.33E-53 | -1.69E-46 |
| MS.gene053188 | MS.gene83082 | 0.813336 | 2.70E-51 | -1.69E-46 |
| MS.gene053216 | MS.gene83082 | 0.818541 | 1.86E-52 | -1.69E-46 |
| MS.gene054405 | MS.gene83082 | 0.815114 | 1.09E-51 | -1.69E-46 |
| MS.gene054537 | MS.gene83082 | 0.822772 | 1.98E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene83082 | 0.819812 | 9.54E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene83082 | 0.824297 | 8.71E-54 | -1.69E-46 |
| MS.gene055367 | MS.gene83082 | 0.823407 | 1.41E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene83082 | 0.853228 | 2.75E-61 | -1.69E-46 |
| MS.gene056087 | MS.gene83082 | 0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene83082 | 0.83996 | 1.16E-57 | -1.69E-46 |
| MS.gene056979 | MS.gene83082 | 0.813107 | 3.03E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene83082 | 0.802252 | 6.13E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene83082 | 0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene83082 | 0.807714 | 4.42E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene83082 | 0.80366 | 3.14E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene83082 | 0.801111 | 1.05E-48 | -1.69E-46 |
| MS.gene059317 | MS.gene83082 | 0.804932 | 1.70E-49 | -1.69E-46 |
| MS.gene059710 | MS.gene83082 | 0.828064 | 1.11E-54 | -1.69E-46 |
| MS.gene060246 | MS.gene83082 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene83082 | 0.808356 | 3.22E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene83082 | 0.816113 | 6.54E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene83082 | -0.810249 | 1.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83082.t1 | MTR_1g032160 | 96.651 | 209 | 7 | 0 | 1 | 209 | 1 | 209 | 7.39e-153 | 422 |
| MS.gene83082.t1 | MTR_1g032190 | 61.463 | 205 | 67 | 1 | 1 | 205 | 1 | 193 | 1.33e-89 | 261 |
| MS.gene83082.t1 | MTR_1g032190 | 61.463 | 205 | 67 | 1 | 1 | 205 | 33 | 225 | 3.38e-89 | 262 |
| MS.gene83082.t1 | MTR_1g073640 | 49.708 | 171 | 86 | 0 | 30 | 200 | 59 | 229 | 1.45e-57 | 182 |
| MS.gene83082.t1 | MTR_7g115490 | 48.538 | 171 | 88 | 0 | 30 | 200 | 61 | 231 | 2.16e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83082.t1 | AT1G70680 | 63.187 | 182 | 67 | 0 | 24 | 205 | 9 | 190 | 1.36e-81 | 241 |
| MS.gene83082.t1 | AT1G70670 | 59.890 | 182 | 73 | 0 | 26 | 207 | 10 | 191 | 2.66e-79 | 236 |
| MS.gene83082.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 2 | 168 | 3.17e-69 | 209 |
| MS.gene83082.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 28 | 194 | 3.94e-69 | 210 |
| MS.gene83082.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 37 | 203 | 5.37e-69 | 210 |
| MS.gene83082.t1 | AT1G70680 | 62.500 | 152 | 57 | 0 | 54 | 205 | 5 | 156 | 2.95e-64 | 196 |
| MS.gene83082.t1 | AT4G26740 | 46.591 | 176 | 90 | 1 | 29 | 200 | 57 | 232 | 1.16e-54 | 174 |
| MS.gene83082.t1 | AT5G55240 | 45.455 | 187 | 98 | 1 | 22 | 204 | 49 | 235 | 3.43e-54 | 173 |
| MS.gene83082.t1 | AT2G33380 | 45.562 | 169 | 92 | 0 | 33 | 201 | 60 | 228 | 6.34e-52 | 167 |
| MS.gene83082.t1 | AT1G23240 | 59.055 | 127 | 52 | 0 | 33 | 159 | 37 | 163 | 8.33e-52 | 165 |
| MS.gene83082.t1 | AT1G23250 | 48.252 | 143 | 71 | 2 | 57 | 199 | 20 | 159 | 1.17e-40 | 137 |
| MS.gene83082.t1 | AT1G23250 | 48.252 | 143 | 71 | 2 | 57 | 199 | 50 | 189 | 5.32e-40 | 136 |
| MS.gene83082.t1 | AT2G33380 | 38.462 | 169 | 62 | 2 | 33 | 201 | 60 | 186 | 1.29e-37 | 129 |
| MS.gene83082.t1 | AT5G29560 | 48.148 | 108 | 56 | 0 | 33 | 140 | 63 | 170 | 3.60e-32 | 115 |
Find 39 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAGCAATGCGTGAAAT+TGG | 0.210121 | 1.2:-16726292 | MS.gene83082:intron |
| AAGCAAACCATTCTTGTCTT+TGG | 0.246204 | 1.2:+16723962 | None:intergenic |
| CTTGTTTGAATTGCTGAAAA+AGG | 0.298907 | 1.2:-16723904 | MS.gene83082:CDS |
| TGGATATTCTTAACTTCAAT+TGG | 0.307296 | 1.2:+16724730 | None:intergenic |
| TCATCATATGTTAAAGCATT+TGG | 0.356094 | 1.2:+16724484 | None:intergenic |
| CACTCCCATGTTTGCCCCGT+TGG | 0.374563 | 1.2:+16724710 | None:intergenic |
| AACCTTCCTTTGACATCTTT+AGG | 0.422579 | 1.2:+16724430 | None:intergenic |
| TTCTTGTTATCATATGATAC+AGG | 0.422673 | 1.2:+16726847 | None:intergenic |
| TCATATGTAGGATTTGTTGA+TGG | 0.435999 | 1.2:-16726726 | MS.gene83082:intron |
| CAACAGCAATGCGTGAAATT+GGG | 0.440569 | 1.2:-16726291 | MS.gene83082:intron |
| TTCTTTGACTTGAATCATGA+TGG | 0.443395 | 1.2:-16726645 | MS.gene83082:CDS |
| GGGTTGGTAGCTTTGTTGAA+TGG | 0.445777 | 1.2:-16724004 | MS.gene83082:CDS |
| AATATCCAACGGGGCAAACA+TGG | 0.456851 | 1.2:-16724715 | MS.gene83082:CDS |
| TGAAGTTAAGAATATCCAAC+GGG | 0.458555 | 1.2:-16724725 | MS.gene83082:CDS |
| GTTTGTTGCATCTAAATTTG+AGG | 0.466576 | 1.2:-16724536 | MS.gene83082:CDS |
| ATGATGGTGTTATTTATCCA+TGG | 0.477891 | 1.2:-16726629 | MS.gene83082:CDS |
| AAACTTGCCAAAGACAAGAA+TGG | 0.495506 | 1.2:-16723969 | MS.gene83082:CDS |
| TATCCATGGGAGACTTTCCA+AGG | 0.507683 | 1.2:-16726615 | MS.gene83082:intron |
| GGCAAACATGGGAGTGACAC+TGG | 0.512670 | 1.2:-16724703 | MS.gene83082:CDS |
| AGGATTTGTTGATGGTATTG+AGG | 0.529818 | 1.2:-16726718 | MS.gene83082:CDS |
| ACAATCCGAGGAGTTTATGA+TGG | 0.535320 | 1.2:-16723930 | MS.gene83082:CDS |
| TGATGGTGTTATTTATCCAT+GGG | 0.540816 | 1.2:-16726628 | MS.gene83082:CDS |
| GCAATGCGTGAAATTGGGAG+TGG | 0.555445 | 1.2:-16726286 | MS.gene83082:CDS |
| AGCTTCCATCATAAACTCCT+CGG | 0.564407 | 1.2:+16723925 | None:intergenic |
| AGAGAGCCTAAAGATGTCAA+AGG | 0.568594 | 1.2:-16724436 | MS.gene83082:CDS |
| ATATGATAACAAGAAACTAA+AGG | 0.573430 | 1.2:-16726839 | MS.gene83082:CDS |
| AGCCTAAAGATGTCAAAGGA+AGG | 0.598867 | 1.2:-16724432 | MS.gene83082:intron |
| CAATGCGTGAAATTGGGAGT+GGG | 0.601313 | 1.2:-16726285 | MS.gene83082:CDS |
| ATACCTTGGAAAGTCTCCCA+TGG | 0.606392 | 1.2:+16726612 | None:intergenic |
| ACTGGAGCATATGATTCTGA+AGG | 0.615429 | 1.2:-16724685 | MS.gene83082:CDS |
| ATATCCAACGGGGCAAACAT+GGG | 0.618740 | 1.2:-16724714 | MS.gene83082:CDS |
| CAGGGCGAGTTGTCTGACTG+AGG | 0.618929 | 1.2:+16726221 | None:intergenic |
| TTGAAGTTAAGAATATCCAA+CGG | 0.624281 | 1.2:-16724726 | MS.gene83082:CDS |
| GATAACAAGAAACTAAAGGA+AGG | 0.628020 | 1.2:-16726835 | MS.gene83082:intron |
| AGGGCGAGTTGTCTGACTGA+GGG | 0.633873 | 1.2:+16726222 | None:intergenic |
| GAGCATATGATTCTGAAGGA+AGG | 0.661835 | 1.2:-16724681 | MS.gene83082:intron |
| CTTCAGAAAGAAACAATCCG+AGG | 0.674979 | 1.2:-16723942 | MS.gene83082:CDS |
| AATGCGTGAAATTGGGAGTG+GGG | 0.694422 | 1.2:-16726284 | MS.gene83082:CDS |
| GAAGTTAAGAATATCCAACG+GGG | 0.810368 | 1.2:-16724724 | MS.gene83082:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAAATAATAATATTT+TGG | - | chr1.2:16725463-16725482 | MS.gene83082:intron | 0.0% |
| !! | AAAACTAAAAAAATATTACT+TGG | - | chr1.2:16725035-16725054 | MS.gene83082:intron | 10.0% |
| !! | AAAGATTATATCTTATAATT+TGG | - | chr1.2:16725308-16725327 | MS.gene83082:intron | 10.0% |
| !! | GTATTAAAGAAAAAAATTAT+AGG | + | chr1.2:16726109-16726128 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAAATACCT+TGG | + | chr1.2:16724142-16724161 | None:intergenic | 10.0% |
| !! | AATATATAGACCAAATATAT+TGG | - | chr1.2:16725003-16725022 | MS.gene83082:intron | 15.0% |
| !! | TAAACAATTAATTGTGTATA+TGG | - | chr1.2:16726393-16726412 | MS.gene83082:intron | 15.0% |
| !! | TATTGAATAACCAATATATT+TGG | + | chr1.2:16725016-16725035 | None:intergenic | 15.0% |
| !! | TTAAATTTCAATTCATATGT+AGG | - | chr1.2:16723999-16724018 | MS.gene83082:CDS | 15.0% |
| !!! | AATAACAGTTAAATTTTGTA+AGG | - | chr1.2:16724373-16724392 | MS.gene83082:intron | 15.0% |
| !!! | TTTTTTTTTTCTTCTTGAAT+TGG | - | chr1.2:16724614-16724633 | MS.gene83082:intron | 15.0% |
| !! | ACTTGAAAAGATTAATACAT+TGG | - | chr1.2:16724350-16724369 | MS.gene83082:intron | 20.0% |
| !! | AGTTATTAAGCTTCATAATT+AGG | - | chr1.2:16724238-16724257 | MS.gene83082:intron | 20.0% |
| !! | ATATGATAACAAGAAACTAA+AGG | - | chr1.2:16723898-16723917 | MS.gene83082:CDS | 20.0% |
| !! | CATTTATTAAATGATGTATG+TGG | + | chr1.2:16726432-16726451 | None:intergenic | 20.0% |
| !! | TACTTATGCTATCATTTATA+TGG | - | chr1.2:16725946-16725965 | MS.gene83082:intron | 20.0% |
| !! | TCTTAACATGTTAATTGTTA+TGG | + | chr1.2:16724328-16724347 | None:intergenic | 20.0% |
| !! | TTCAATTAGACATTGAATTT+GGG | + | chr1.2:16724280-16724299 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr1.2:16726591-16726610 | MS.gene83082:intron | 20.0% |
| !!! | AAATTTTGTAAGGAGAAAAA+AGG | - | chr1.2:16724383-16724402 | MS.gene83082:intron | 20.0% |
| !!! | ACATCTTATAATTTTCTTCT+CGG | - | chr1.2:16724557-16724576 | MS.gene83082:intron | 20.0% |
| !!! | ACTCTCTTTTAAAATACTTT+TGG | + | chr1.2:16725595-16725614 | None:intergenic | 20.0% |
| !!! | AGCAATTTTGATATTTTTTC+TGG | - | chr1.2:16724774-16724793 | MS.gene83082:intron | 20.0% |
| !!! | ATATTTTGGTCTCAAAATTT+TGG | - | chr1.2:16725477-16725496 | MS.gene83082:intron | 20.0% |
| !!! | CTCTCTTTTAAAATACTTTT+GGG | + | chr1.2:16725594-16725613 | None:intergenic | 20.0% |
| !!! | TTCATAAGTCAAGTTTTTAT+TGG | + | chr1.2:16725805-16725824 | None:intergenic | 20.0% |
| ! | AAGTAATGTTCGTTTAAAAG+AGG | + | chr1.2:16725746-16725765 | None:intergenic | 25.0% |
| ! | AATTAATACTCGTATATGCA+GGG | - | chr1.2:16726713-16726732 | MS.gene83082:CDS | 25.0% |
| ! | ACTCAAAAAAGATATTTGAG+CGG | - | chr1.2:16725144-16725163 | MS.gene83082:intron | 25.0% |
| ! | AGAAAAAAGGAATTTGATAG+TGG | - | chr1.2:16724396-16724415 | MS.gene83082:intron | 25.0% |
| ! | ATTAATGTTATACGACCTTA+TGG | + | chr1.2:16725773-16725792 | None:intergenic | 25.0% |
| ! | ATTACTTGAGCTAAACTATT+TGG | + | chr1.2:16724194-16724213 | None:intergenic | 25.0% |
| ! | CATAAAGAGATTTACTTACA+GGG | + | chr1.2:16724537-16724556 | None:intergenic | 25.0% |
| ! | GTTCAATTAGACATTGAATT+TGG | + | chr1.2:16724281-16724300 | None:intergenic | 25.0% |
| ! | TAATTAATACTCGTATATGC+AGG | - | chr1.2:16726712-16726731 | MS.gene83082:CDS | 25.0% |
| ! | TATGAAGCTTAATAACTACT+TGG | + | chr1.2:16724235-16724254 | None:intergenic | 25.0% |
| ! | TATGACTTATGGACAATTAA+GGG | - | chr1.2:16724803-16724822 | MS.gene83082:intron | 25.0% |
| ! | TCATAAAGAGATTTACTTAC+AGG | + | chr1.2:16724538-16724557 | None:intergenic | 25.0% |
| ! | TGGATATTCTTAACTTCAAT+TGG | + | chr1.2:16726010-16726029 | None:intergenic | 25.0% |
| ! | TTAACTTCAATTGGAAAAAG+TGG | + | chr1.2:16726001-16726020 | None:intergenic | 25.0% |
| ! | TTCATAATTAGGTCAAGTTT+AGG | - | chr1.2:16724249-16724268 | MS.gene83082:intron | 25.0% |
| ! | TTGAAGTTAAGAATATCCAA+CGG | - | chr1.2:16726011-16726030 | MS.gene83082:intron | 25.0% |
| !! | TCATCATATGTTAAAGCATT+TGG | + | chr1.2:16726256-16726275 | None:intergenic | 25.0% |
| !! | TCATCGAATCAATCTATTTT+TGG | + | chr1.2:16725125-16725144 | None:intergenic | 25.0% |
| !! | TGAAGAACATTTTCATGATT+TGG | + | chr1.2:16724059-16724078 | None:intergenic | 25.0% |
| !! | TTCTTGTTATCATATGATAC+AGG | + | chr1.2:16723893-16723912 | None:intergenic | 25.0% |
| !! | TTTTTCTTCTTGAATTGGAT+AGG | - | chr1.2:16724619-16724638 | MS.gene83082:intron | 25.0% |
| !!! | AACATTTTCATGATTTGGAA+TGG | + | chr1.2:16724054-16724073 | None:intergenic | 25.0% |
| !!! | ACATTTTCATGATTTGGAAT+GGG | + | chr1.2:16724053-16724072 | None:intergenic | 25.0% |
| !!! | AGTCAAGTTTTTATTGGTTA+AGG | + | chr1.2:16725799-16725818 | None:intergenic | 25.0% |
| !!! | GTCAAGTTTTTATTGGTTAA+GGG | + | chr1.2:16725798-16725817 | None:intergenic | 25.0% |
| !!! | GTTTTAATAACCTTAGTCAT+GGG | + | chr1.2:16725621-16725640 | None:intergenic | 25.0% |
| ACTAAGGTTATTAAAACCCT+AGG | - | chr1.2:16725624-16725643 | MS.gene83082:intron | 30.0% | |
| ATGACTTATGGACAATTAAG+GGG | - | chr1.2:16724804-16724823 | MS.gene83082:intron | 30.0% | |
| CTATGACTTATGGACAATTA+AGG | - | chr1.2:16724802-16724821 | MS.gene83082:intron | 30.0% | |
| CTTGTTTGAATTGCTGAAAA+AGG | - | chr1.2:16726833-16726852 | MS.gene83082:intron | 30.0% | |
| GATAACAAGAAACTAAAGGA+AGG | - | chr1.2:16723902-16723921 | MS.gene83082:CDS | 30.0% | |
| TATTTACATAAGCGTCTTAG+TGG | + | chr1.2:16725443-16725462 | None:intergenic | 30.0% | |
| TGAAGTTAAGAATATCCAAC+GGG | - | chr1.2:16726012-16726031 | MS.gene83082:intron | 30.0% | |
| ! | CTCTTTTCCCTCTAATTTAT+AGG | + | chr1.2:16725400-16725419 | None:intergenic | 30.0% |
| ! | GTTTGTTGCATCTAAATTTG+AGG | - | chr1.2:16726201-16726220 | MS.gene83082:intron | 30.0% |
| ! | TATATGGTTCTTGTTGTGTA+GGG | - | chr1.2:16725962-16725981 | MS.gene83082:intron | 30.0% |
| ! | TTATATGGTTCTTGTTGTGT+AGG | - | chr1.2:16725961-16725980 | MS.gene83082:intron | 30.0% |
| ! | TTGTAGATCTAAAACTCCTA+GGG | + | chr1.2:16725643-16725662 | None:intergenic | 30.0% |
| ! | TTTGTAGATCTAAAACTCCT+AGG | + | chr1.2:16725644-16725663 | None:intergenic | 30.0% |
| ! | TTTTGGTCTCAAAATTTTGG+AGG | - | chr1.2:16725480-16725499 | MS.gene83082:intron | 30.0% |
| !! | AAGGGGAAACTTTAATTTGT+AGG | - | chr1.2:16724821-16724840 | MS.gene83082:intron | 30.0% |
| !! | ATGATGGTGTTATTTATCCA+TGG | - | chr1.2:16724108-16724127 | MS.gene83082:intron | 30.0% |
| !! | GAACATTACTTTTGTCCATA+AGG | - | chr1.2:16725755-16725774 | MS.gene83082:intron | 30.0% |
| !! | GGTTTTAATAACCTTAGTCA+TGG | + | chr1.2:16725622-16725641 | None:intergenic | 30.0% |
| !! | TCATATGTAGGATTTGTTGA+TGG | - | chr1.2:16724011-16724030 | MS.gene83082:intron | 30.0% |
| !! | TGATGGTGTTATTTATCCAT+GGG | - | chr1.2:16724109-16724128 | MS.gene83082:intron | 30.0% |
| !! | TTCTTTGACTTGAATCATGA+TGG | - | chr1.2:16724092-16724111 | MS.gene83082:intron | 30.0% |
| !!! | TGGTTGAAACTGAAGTTTTT+TGG | + | chr1.2:16725105-16725124 | None:intergenic | 30.0% |
| AAACTTGCCAAAGACAAGAA+TGG | - | chr1.2:16726768-16726787 | MS.gene83082:intron | 35.0% | |
| AACCTTCCTTTGACATCTTT+AGG | + | chr1.2:16726310-16726329 | None:intergenic | 35.0% | |
| AAGAGAGTCTTGAGGATATA+TGG | - | chr1.2:16725415-16725434 | MS.gene83082:intron | 35.0% | |
| AAGCAAACCATTCTTGTCTT+TGG | + | chr1.2:16726778-16726797 | None:intergenic | 35.0% | |
| AATATACTCAGAGACATAGC+TGG | + | chr1.2:16725542-16725561 | None:intergenic | 35.0% | |
| CAAATTATTAGTTGTGTCGG+CGG | - | chr1.2:16726594-16726613 | MS.gene83082:intron | 35.0% | |
| CAATTGGAAAAAGTGGAGAT+GGG | + | chr1.2:16725994-16726013 | None:intergenic | 35.0% | |
| CTCAGTGTAATTACAAGTGT+CGG | + | chr1.2:16726558-16726577 | None:intergenic | 35.0% | |
| GAAGTTAAGAATATCCAACG+GGG | - | chr1.2:16726013-16726032 | MS.gene83082:intron | 35.0% | |
| TATTTGAGCGGTGAAGTAAA+AGG | - | chr1.2:16725156-16725175 | MS.gene83082:intron | 35.0% | |
| TCAATTGGAAAAAGTGGAGA+TGG | + | chr1.2:16725995-16726014 | None:intergenic | 35.0% | |
| TCTGGTTGAACTATGACTTA+TGG | - | chr1.2:16724792-16724811 | MS.gene83082:intron | 35.0% | |
| TGAGCTAAACTATTTGGTCA+TGG | + | chr1.2:16724188-16724207 | None:intergenic | 35.0% | |
| ! | AAATTATTAGTTGTGTCGGC+GGG | - | chr1.2:16726595-16726614 | MS.gene83082:intron | 35.0% |
| !! | AGGATTTGTTGATGGTATTG+AGG | - | chr1.2:16724019-16724038 | MS.gene83082:intron | 35.0% |
| !!! | GAGACATAGCTGGTTTTTAA+AGG | + | chr1.2:16725532-16725551 | None:intergenic | 35.0% |
| AATACTCGTATATGCAGGGT+TGG | - | chr1.2:16726717-16726736 | MS.gene83082:CDS | 40.0% | |
| ACAACAGCAATGCGTGAAAT+TGG | - | chr1.2:16724445-16724464 | MS.gene83082:CDS | 40.0% | |
| ACAATCCGAGGAGTTTATGA+TGG | - | chr1.2:16726807-16726826 | MS.gene83082:intron | 40.0% | |
| ACTGGAGCATATGATTCTGA+AGG | - | chr1.2:16726052-16726071 | MS.gene83082:intron | 40.0% | |
| AGAGAGCCTAAAGATGTCAA+AGG | - | chr1.2:16726301-16726320 | MS.gene83082:intron | 40.0% | |
| AGCCTAAAGATGTCAAAGGA+AGG | - | chr1.2:16726305-16726324 | MS.gene83082:intron | 40.0% | |
| AGCTTCCATCATAAACTCCT+CGG | + | chr1.2:16726815-16726834 | None:intergenic | 40.0% | |
| ATCCGATCATCTATGAAGCA+CGG | + | chr1.2:16726658-16726677 | None:intergenic | 40.0% | |
| ATCCGTGCTTCATAGATGAT+CGG | - | chr1.2:16726653-16726672 | MS.gene83082:CDS | 40.0% | |
| CAAAATTGCTAGCTCAAACG+CGG | + | chr1.2:16724764-16724783 | None:intergenic | 40.0% | |
| CAACAGCAATGCGTGAAATT+GGG | - | chr1.2:16724446-16724465 | MS.gene83082:CDS | 40.0% | |
| CATCAAGATATCCTCATTCG+TGG | + | chr1.2:16725193-16725212 | None:intergenic | 40.0% | |
| CCAACTCTCACTGAACATAT+AGG | - | chr1.2:16725870-16725889 | MS.gene83082:intron | 40.0% | |
| CCTATATGTTCAGTGAGAGT+TGG | + | chr1.2:16725873-16725892 | None:intergenic | 40.0% | |
| CTTCAGAAAGAAACAATCCG+AGG | - | chr1.2:16726795-16726814 | MS.gene83082:intron | 40.0% | |
| GGCGGTTCCTATAAATTAGA+GGG | - | chr1.2:16725390-16725409 | MS.gene83082:intron | 40.0% | |
| TAGTGACCAGCTATAAAGCA+CGG | - | chr1.2:16726480-16726499 | MS.gene83082:intron | 40.0% | |
| TCATCTATGAAGCACGGATA+CGG | + | chr1.2:16726652-16726671 | None:intergenic | 40.0% | |
| TGAAAATAGCTCAAGAGAGC+TGG | + | chr1.2:16725507-16725526 | None:intergenic | 40.0% | |
| ! | GAGCATATGATTCTGAAGGA+AGG | - | chr1.2:16726056-16726075 | MS.gene83082:intron | 40.0% |
| !! | GTAATTACAAGTGTCGGTGT+CGG | + | chr1.2:16726552-16726571 | None:intergenic | 40.0% |
| !!! | AGCTGCTATTTTCATCAACG+TGG | - | chr1.2:16724492-16724511 | MS.gene83082:CDS | 40.0% |
| AAGTGCAAATGCCACGAATG+AGG | - | chr1.2:16725179-16725198 | MS.gene83082:intron | 45.0% | |
| AATATCCAACGGGGCAAACA+TGG | - | chr1.2:16726022-16726041 | MS.gene83082:intron | 45.0% | |
| AATGCGTGAAATTGGGAGTG+GGG | - | chr1.2:16724453-16724472 | MS.gene83082:CDS | 45.0% | |
| AGAGGGAAAAGAGAGTCTTG+AGG | - | chr1.2:16725407-16725426 | MS.gene83082:intron | 45.0% | |
| AGTTATGTCAGCTTGCGTGT+AGG | - | chr1.2:16725368-16725387 | MS.gene83082:intron | 45.0% | |
| ATACCTTGGAAAGTCTCCCA+TGG | + | chr1.2:16724128-16724147 | None:intergenic | 45.0% | |
| ATATCCAACGGGGCAAACAT+GGG | - | chr1.2:16726023-16726042 | MS.gene83082:intron | 45.0% | |
| CAATGCGTGAAATTGGGAGT+GGG | - | chr1.2:16724452-16724471 | MS.gene83082:CDS | 45.0% | |
| GGGCGGTTCCTATAAATTAG+AGG | - | chr1.2:16725389-16725408 | MS.gene83082:intron | 45.0% | |
| GTGCTTCATAGATGATCGGA+TGG | - | chr1.2:16726657-16726676 | MS.gene83082:CDS | 45.0% | |
| GTTATGTCAGCTTGCGTGTA+GGG | - | chr1.2:16725369-16725388 | MS.gene83082:intron | 45.0% | |
| TATAAAGCACGGACACTCCT+CGG | - | chr1.2:16726491-16726510 | MS.gene83082:intron | 45.0% | |
| TATCCATGGGAGACTTTCCA+AGG | - | chr1.2:16724122-16724141 | MS.gene83082:intron | 45.0% | |
| !! | GGGTTGGTAGCTTTGTTGAA+TGG | - | chr1.2:16726733-16726752 | MS.gene83082:intron | 45.0% |
| !!! | AGTAAAAATATATATTTTTT+AGG | - | chr1.2:16726179-16726198 | MS.gene83082:intron | 5.0% |
| !!! | TAAAAAATATATATTTTTAC+TGG | + | chr1.2:16726180-16726199 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTACATAA+AGG | - | chr1.2:16724147-16724166 | MS.gene83082:intron | 5.0% |
| ACACGACATGTGTTCGACAC+CGG | + | chr1.2:16726529-16726548 | None:intergenic | 50.0% | |
| AGAGAGTCGTCCCATGACTA+AGG | - | chr1.2:16725608-16725627 | MS.gene83082:intron | 50.0% | |
| ATCGGATGGTGTACGATGCA+TGG | - | chr1.2:16726671-16726690 | MS.gene83082:CDS | 50.0% | |
| GAGTGTCCGTGCTTTATAGC+TGG | + | chr1.2:16726489-16726508 | None:intergenic | 50.0% | |
| GCAATGCGTGAAATTGGGAG+TGG | - | chr1.2:16724451-16724470 | MS.gene83082:CDS | 50.0% | |
| AGGGCGAGTTGTCTGACTGA+GGG | + | chr1.2:16724518-16724537 | None:intergenic | 55.0% | |
| ATGAAGCACGGATACGGACG+CGG | + | chr1.2:16726646-16726665 | None:intergenic | 55.0% | |
| ATGTCAGCTTGCGTGTAGGG+CGG | - | chr1.2:16725372-16725391 | MS.gene83082:intron | 55.0% | |
| CACGACATGTGTTCGACACC+GGG | + | chr1.2:16726528-16726547 | None:intergenic | 55.0% | |
| GGCAAACATGGGAGTGACAC+TGG | - | chr1.2:16726034-16726053 | MS.gene83082:intron | 55.0% | |
| CACTCCCATGTTTGCCCCGT+TGG | + | chr1.2:16726030-16726049 | None:intergenic | 60.0% | |
| CAGGGCGAGTTGTCTGACTG+AGG | + | chr1.2:16724519-16724538 | None:intergenic | 60.0% | |
| CGCGGACACTGGACACAACA+CGG | + | chr1.2:16726628-16726647 | None:intergenic | 60.0% | |
| ACGGATACGGACGCGGACAC+TGG | + | chr1.2:16726639-16726658 | None:intergenic | 65.0% | |
| GCACGGACACTCCTCGGACT+AGG | - | chr1.2:16726497-16726516 | MS.gene83082:intron | 65.0% | |
| ! | TCCTCGGACTAGGCGTGTCC+CGG | - | chr1.2:16726507-16726526 | MS.gene83082:intron | 65.0% |
| ACCGGGACACGCCTAGTCCG+AGG | + | chr1.2:16726511-16726530 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 16723875 | 16726884 | 16723875 | ID=MS.gene83082 |
| chr1.2 | mRNA | 16723875 | 16726884 | 16723875 | ID=MS.gene83082.t1;Parent=MS.gene83082 |
| chr1.2 | exon | 16726836 | 16726884 | 16726836 | ID=MS.gene83082.t1.exon1;Parent=MS.gene83082.t1 |
| chr1.2 | CDS | 16726836 | 16726884 | 16726836 | ID=cds.MS.gene83082.t1;Parent=MS.gene83082.t1 |
| chr1.2 | exon | 16726616 | 16726738 | 16726616 | ID=MS.gene83082.t1.exon2;Parent=MS.gene83082.t1 |
| chr1.2 | CDS | 16726616 | 16726738 | 16726616 | ID=cds.MS.gene83082.t1;Parent=MS.gene83082.t1 |
| chr1.2 | exon | 16726222 | 16726307 | 16726222 | ID=MS.gene83082.t1.exon3;Parent=MS.gene83082.t1 |
| chr1.2 | CDS | 16726222 | 16726307 | 16726222 | ID=cds.MS.gene83082.t1;Parent=MS.gene83082.t1 |
| chr1.2 | exon | 16724682 | 16724776 | 16724682 | ID=MS.gene83082.t1.exon4;Parent=MS.gene83082.t1 |
| chr1.2 | CDS | 16724682 | 16724776 | 16724682 | ID=cds.MS.gene83082.t1;Parent=MS.gene83082.t1 |
| chr1.2 | exon | 16724433 | 16724558 | 16724433 | ID=MS.gene83082.t1.exon5;Parent=MS.gene83082.t1 |
| chr1.2 | CDS | 16724433 | 16724558 | 16724433 | ID=cds.MS.gene83082.t1;Parent=MS.gene83082.t1 |
| chr1.2 | exon | 16723875 | 16724025 | 16723875 | ID=MS.gene83082.t1.exon6;Parent=MS.gene83082.t1 |
| chr1.2 | CDS | 16723875 | 16724025 | 16723875 | ID=cds.MS.gene83082.t1;Parent=MS.gene83082.t1 |
| Gene Sequence |
| Protein sequence |
