AlfalfaGEDB | MS.gene90525

M. sativa cultivar XinJiangDaYe / MS.gene90525

KEGG: K12741
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90525.t1	KYP54855.1	58.5	123	43	2	56	170	176	298	2.50E-06	62.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90525.t1	A0A151SJC1	58.5	123	43	2	56	170	176	298	1.8e-06	62.8

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene90525	0.852371	4.82E-61	-1.69E-46
MS.gene049159	MS.gene90525	0.897025	2.10E-76	-1.69E-46
MS.gene049254	MS.gene90525	0.838909	2.17E-57	-1.69E-46
MS.gene049368	MS.gene90525	0.800208	1.61E-48	-1.69E-46
MS.gene049404	MS.gene90525	0.819638	1.05E-52	-1.69E-46
MS.gene049435	MS.gene90525	0.863844	1.86E-64	-1.69E-46
MS.gene049452	MS.gene90525	0.844635	6.69E-59	-1.69E-46
MS.gene049501	MS.gene90525	0.841572	4.38E-58	-1.69E-46
MS.gene049647	MS.gene90525	0.811415	7.08E-51	-1.69E-46
MS.gene049801	MS.gene90525	0.824313	8.64E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90525.t1	MTR_6g004810	80.513	195	26	3	56	238	189	383	1.45e-34	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 99 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTATTCATCGCATATG+AGG	0.520287	8.3:+24148415	None:intergenic
AACAGCTTTGCTGAACTTGA+TGG	0.367537	8.3:+24148482	None:intergenic
ACCTCCGCCAGCGGCAGCAC+CGG	0.459957	8.3:+24146735	None:intergenic
ACTGCTTATGGTGGTAGGGG+TGG	0.508109	8.3:-24146940	MS.gene90525:CDS
AGAAGAACCACCTCCGCCAG+CGG	0.592882	8.3:+24146726	None:intergenic
AGAGAAGGATCTCCTCTGTA+GGG	0.575562	8.3:+24146853	None:intergenic
AGAGGTGGATATGGTGGTGC+TGG	0.552625	8.3:-24146616	MS.gene90525:CDS
AGCAGAGGCTATGATCCTAG+TGG	0.638315	8.3:-24146799	MS.gene90525:CDS
AGGTCTGGCACTGCTTATGG+TGG	0.622757	8.3:-24146949	MS.gene90525:CDS
AGGTCTTCATACAACAGTGG+TGG	0.604549	8.3:-24147012	MS.gene90525:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCATGGAACATGAGAAA+TGG	+	chr8.3:24147607-24147626	None:intergenic	30.0%
AATCATGGAACATGAGAAAT+GGG	+	chr8.3:24147606-24147625	None:intergenic	30.0%
GAGACAATTCGTAAAAGTAA+GGG	+	chr8.3:24146639-24146658	None:intergenic	30.0%
TATTCTTAGGGATTCTATGA+GGG	-	chr8.3:24146776-24146795	MS.gene90525:CDS	30.0%
TGAGACAATTCGTAAAAGTA+AGG	+	chr8.3:24146640-24146659	None:intergenic	30.0%
TGTTATCTTTACTTTGTAGG+TGG	-	chr8.3:24147982-24148001	MS.gene90525:CDS	30.0%
TTATTCTTAGGGATTCTATG+AGG	-	chr8.3:24146775-24146794	MS.gene90525:CDS	30.0%
TTCCAAACCAAACAAAATCA+TGG	+	chr8.3:24147621-24147640	None:intergenic	30.0%
TTCTCCACAAATTCTCTAAT+GGG	-	chr8.3:24146912-24146931	MS.gene90525:CDS	30.0%
TTTGGTAAAGAAATGAGCAT+TGG	-	chr8.3:24147091-24147110	MS.gene90525:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	24146591	24148516	24146591	ID=MS.gene90525
chr8.3	mRNA	24146591	24148516	24146591	ID=MS.gene90525.t1;Parent=MS.gene90525
chr8.3	exon	24148397	24148516	24148397	ID=MS.gene90525.t1.exon1;Parent=MS.gene90525.t1
chr8.3	CDS	24148397	24148516	24148397	ID=cds.MS.gene90525.t1;Parent=MS.gene90525.t1
chr8.3	exon	24147939	24148019	24147939	ID=MS.gene90525.t1.exon2;Parent=MS.gene90525.t1
chr8.3	CDS	24147939	24148019	24147939	ID=cds.MS.gene90525.t1;Parent=MS.gene90525.t1
chr8.3	exon	24146591	24147106	24146591	ID=MS.gene90525.t1.exon3;Parent=MS.gene90525.t1
chr8.3	CDS	24146591	24147106	24146591	ID=cds.MS.gene90525.t1;Parent=MS.gene90525.t1

Gene Sequence

>MS.gene90525

ATGCAAACTTCACCATCAAGTTCAGCAAAGCTGTTAATGAGGAGTCCCTTACTTTTACGAATTGTCTCAAGCATCCTTTCCTCATATGCGATGAATAGCTTTGGTGGTGTTGAGCAAAAGGTGATAGAATGAGGAAAATCTGGAACAACAAACGAACTCGAATTCTTGTCAGAATATGAACGGTTTATTCTTAGGGATTCTATGAGGGATACTGTAAAGAGGGAGTATCCGGTGAAGGCAATGGTGGAGATATGAGGCTTATTGGTCAGGTCATTAATCCAAGGGTATACACAGTCAGCAATGATGTAGTCAGGTTGATCCTTCTCCACAAATTCTCTAATGGGTTCATGGAGAAGCATTGCACCTTTGCATATCTTGGCCATGGTGGCAGGGTCATCGGTGGAGGACAATGATTCAACTCCATCGGAGAGGTCGACTTGCTGGGAGGGGAAGTCGATGGTGTGAAGGTGGAGGAAGTACGGATCGACAAATGAGAGAGATTTGGTAAAGAAATGAGCATTGGAGGGAGTGGTGATGATCATGACTTGCTGGCCTTGGGATGCAAACAGAGCTGCTATGTCACCCAAAGGAATCATATGACCAGGTGATAGAAATGGAAGCATGTGAAGTTTCAATGGCCGTTCGACTTCAACACCTTCCATTATTGCTGCTCAAAATAATTGCTGATCAATTTTAGGGAGCCCTTCTATTTATTATTGAATTATGTCTGCACGAGGCCACTTATTTCTGCACGAGGCCACGTGATTATGTTTTTTGACGGAAGGAAATAGGAATACACGAGGCCACTTATTTCTGCACGAGGCCACGTGATTATGTTTTGGAAAAAGATTGGTGAACACCCTTCTCCATACCACTCTTCCATACACCCCTTATGTGGCATGGGTATTTTTGAAATTTCACACAACTTTCTCTTTCTCACCCTCTTCTCTCTCTTAGATCTCCCTTTCTTCTCCCTCTCACTCACTTCCTGCCGTTCCCACTACCAACCAAACCCATTTCTCATGTTCCATGATTTTGTTTGGTTTGGAATTGAATTTACTGTTCTAGTCTTCACAACTTTCTTCTTTGGAGTTAGAAATTCGCCTTCTACTTGTGTTTTTTGGAGGTGGATTTCATTGGGGTATTCTTTAATTTTCCCGACATGACCCCATTTGCAAGAGTTTGTTGCCTTCATTAATACATTATTCAATTTATCATGTAAATCTGGAGGAAGTTTTTCTTAAATTCAAGTGTTTACTGGTTTGTACCTTGAGTTACAATCATTTTTTACATCATGCGTTGTTCCATCATTTTTTTCTTTACATTTTTTCCCAGATTTTTTTTTGTTTTATTTTCTTCATTTAATGCAATTGTCGTCAATGCATTAACTTTGTTATCTTTACTTTGTAGGTGGAAATCAAGAAGGCTGAACCAAAAAAGGCAAATGCACCACCTCCATCATCCAAGCGCTACAATGACTCAAGGTCTTCATACAACAGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGATTTGGTAGGTCTGGCACTGCTTATGGTGGTAGGGGTGGTCCGTATGGTGGCTATGGAAGTGAGTTTGCTGGGTATGGTGGATATGCTGGAGCAATGGGGGGACCCTACAGAGGAGATCCTTCTCTAGCATATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCCTAGTGGGTATGGCGGACTTGGTGAGAGTTATGGGGCATTTGGTGGTGCCGGTGCTGCCGCTGGCGGAGGTGGTTCTTCTGGTGCTGGTGCATATCAAAGTGGCTATGATGCCAGCCTTGGCGTTGGATATGGAAGAGCTGTTAGTGGAGCTTCCTTCTATGGAAGCAGAGGTGGATATGGTGGTGCTGGTCAATATCATCCTTATGGAAGATAG

Protein sequence

>MS.gene90525.t1

MQTSPSSSAKLLMRSPLLLRIVSSILSSYAMNSFGGVEQKRFGKEMSIGGSGDDHDLLALGCKQSCYVEIKKAEPKKANAPPPSSKRYNDSRSSYNSGGYGDAYDGFGGGFGRSGTAYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLAYAGRYGGSFSRGYDPSGYGGLGESYGAFGGAGAAAGGGGSSGAGAYQSGYDASLGVGYGRAVSGASFYGSRGGYGGAGQYHPYGR