Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65718.t1 | RHN65650.1 | 85.1 | 336 | 25 | 5 | 1 | 324 | 1 | 323 | 1.10E-124 | 456.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65718.t1 | Q9LJG8 | 37.3 | 102 | 60 | 1 | 44 | 141 | 82 | 183 | 1.0e-11 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65718.t1 | A0A396IK94 | 85.1 | 336 | 25 | 5 | 1 | 324 | 1 | 323 | 7.7e-125 | 456.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65718.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene65718 | 0.804413 | 2.19E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene65718 | 0.815813 | 7.63E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene65718 | 0.800891 | 1.16E-48 | -1.69E-46 |
| MS.gene050438 | MS.gene65718 | 0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene65718 | 0.821366 | 4.19E-53 | -1.69E-46 |
| MS.gene050680 | MS.gene65718 | 0.800898 | 1.16E-48 | -1.69E-46 |
| MS.gene050787 | MS.gene65718 | 0.842942 | 1.90E-58 | -1.69E-46 |
| MS.gene050844 | MS.gene65718 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene050959 | MS.gene65718 | 0.816096 | 6.59E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene65718 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene65718 | 0.815116 | 1.09E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene65718 | 0.802103 | 6.58E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene65718 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene053147 | MS.gene65718 | 0.805853 | 1.09E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene65718 | 0.807539 | 4.81E-50 | -1.69E-46 |
| MS.gene054433 | MS.gene65718 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene65718 | 0.849735 | 2.67E-60 | -1.69E-46 |
| MS.gene054468 | MS.gene65718 | 0.816513 | 5.32E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene65718 | 0.821195 | 4.59E-53 | -1.69E-46 |
| MS.gene054801 | MS.gene65718 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene054833 | MS.gene65718 | 0.800068 | 1.71E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene65718 | 0.83608 | 1.15E-56 | -1.69E-46 |
| MS.gene055357 | MS.gene65718 | 0.82798 | 1.16E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene65718 | 0.855499 | 6.05E-62 | -1.69E-46 |
| MS.gene055608 | MS.gene65718 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene65718 | 0.804581 | 2.02E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene65718 | 0.839358 | 1.66E-57 | -1.69E-46 |
| MS.gene060137 | MS.gene65718 | -0.813208 | 2.88E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene65718 | 0.823733 | 1.18E-53 | -1.69E-46 |
| MS.gene060677 | MS.gene65718 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene060803 | MS.gene65718 | 0.808907 | 2.46E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65718.t1 | MTR_3g014280 | 88.462 | 338 | 12 | 6 | 1 | 324 | 1 | 325 | 0.0 | 541 |
| MS.gene65718.t1 | MTR_1g037650 | 86.432 | 199 | 6 | 5 | 1 | 191 | 1 | 186 | 4.40e-106 | 308 |
| MS.gene65718.t1 | MTR_4g117990 | 27.362 | 307 | 152 | 9 | 40 | 306 | 38 | 313 | 2.40e-19 | 87.4 |
| MS.gene65718.t1 | MTR_8g022290 | 25.566 | 309 | 160 | 11 | 33 | 304 | 58 | 333 | 4.39e-18 | 84.3 |
| MS.gene65718.t1 | MTR_2g016140 | 39.796 | 98 | 52 | 3 | 41 | 131 | 18 | 115 | 1.05e-15 | 77.0 |
| MS.gene65718.t1 | MTR_2g016140 | 39.796 | 98 | 52 | 3 | 41 | 131 | 18 | 115 | 1.20e-15 | 77.0 |
| MS.gene65718.t1 | MTR_1g061600 | 40.816 | 98 | 49 | 3 | 40 | 131 | 127 | 221 | 3.49e-15 | 76.6 |
| MS.gene65718.t1 | MTR_4g079960 | 24.176 | 273 | 185 | 6 | 44 | 304 | 29 | 291 | 6.78e-14 | 71.6 |
| MS.gene65718.t1 | MTR_4g079960 | 24.176 | 273 | 185 | 6 | 44 | 304 | 29 | 291 | 6.83e-14 | 71.6 |
| MS.gene65718.t1 | MTR_4g079960 | 24.176 | 273 | 185 | 6 | 44 | 304 | 29 | 291 | 1.07e-13 | 70.9 |
| MS.gene65718.t1 | MTR_5g017500 | 33.036 | 112 | 66 | 3 | 46 | 148 | 22 | 133 | 5.78e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65718.t1 | AT3G54390 | 60.627 | 287 | 89 | 6 | 39 | 323 | 31 | 295 | 4.01e-104 | 307 |
| MS.gene65718.t1 | AT3G54390 | 60.627 | 287 | 89 | 6 | 39 | 323 | 47 | 311 | 8.87e-104 | 306 |
| MS.gene65718.t1 | AT3G10030 | 42.000 | 100 | 51 | 2 | 34 | 128 | 149 | 246 | 1.87e-17 | 83.6 |
| MS.gene65718.t1 | AT3G10030 | 40.777 | 103 | 54 | 2 | 34 | 131 | 149 | 249 | 2.13e-17 | 83.2 |
| MS.gene65718.t1 | AT3G14180 | 35.772 | 123 | 67 | 2 | 31 | 141 | 61 | 183 | 5.26e-16 | 79.0 |
| MS.gene65718.t1 | AT3G58630 | 26.829 | 287 | 171 | 10 | 42 | 304 | 22 | 293 | 2.12e-15 | 76.3 |
| MS.gene65718.t1 | AT3G58630 | 26.829 | 287 | 171 | 10 | 42 | 304 | 22 | 293 | 2.37e-15 | 75.9 |
| MS.gene65718.t1 | AT3G24860 | 40.698 | 86 | 47 | 2 | 46 | 130 | 65 | 147 | 5.21e-14 | 72.0 |
| MS.gene65718.t1 | AT5G05550 | 42.222 | 90 | 52 | 0 | 42 | 131 | 20 | 109 | 1.43e-13 | 69.7 |
| MS.gene65718.t1 | AT5G05550 | 42.222 | 90 | 52 | 0 | 42 | 131 | 20 | 109 | 1.49e-13 | 69.7 |
| MS.gene65718.t1 | AT5G05550 | 42.222 | 90 | 52 | 0 | 42 | 131 | 20 | 109 | 2.01e-13 | 69.3 |
| MS.gene65718.t1 | AT3G11100 | 43.333 | 90 | 49 | 2 | 42 | 131 | 18 | 105 | 1.03e-12 | 67.4 |
| MS.gene65718.t1 | AT2G44730 | 33.673 | 98 | 58 | 1 | 40 | 130 | 58 | 155 | 1.05e-11 | 65.5 |
Find 48 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACAACAATATTATTAT+TGG | 0.197844 | 3.2:+7277001 | MS.gene65718:CDS |
| TTACACTGTGTTTGTGTCTT+TGG | 0.214518 | 3.2:-7277199 | None:intergenic |
| TTGAAGCATATGAATCAAAA+TGG | 0.232049 | 3.2:+7277089 | MS.gene65718:CDS |
| ATGGATTCTTGTTAGCTATA+TGG | 0.326116 | 3.2:-7278816 | None:intergenic |
| GTTGATTCATCATTGAGAAT+TGG | 0.394877 | 3.2:+7279162 | MS.gene65718:CDS |
| ATTATTATTGGTAGTGGAAG+TGG | 0.394946 | 3.2:+7277013 | MS.gene65718:CDS |
| AACAATATTATTATTGGTAG+TGG | 0.397415 | 3.2:+7277007 | MS.gene65718:CDS |
| ACTAAACAATAATCAAGGTT+TGG | 0.408425 | 3.2:+7277348 | MS.gene65718:CDS |
| AAGCGCCGGCGTGCTGCTAT+CGG | 0.427506 | 3.2:-7278845 | None:intergenic |
| CAAAACTCAAAGGACAAGAT+TGG | 0.436569 | 3.2:+7277128 | MS.gene65718:CDS |
| GGTGATTCTTGTTGTGATGT+TGG | 0.438336 | 3.2:-7276971 | None:intergenic |
| CAAAACTCACATGGATCAAA+TGG | 0.444369 | 3.2:+7277451 | MS.gene65718:CDS |
| CTAGTTCAGATGTTTCATCT+TGG | 0.449491 | 3.2:+7277266 | MS.gene65718:CDS |
| AGCTATATGGTCAGATGACT+TGG | 0.453546 | 3.2:-7278803 | None:intergenic |
| TGAGGCAAAGAGAGGAGAAA+TGG | 0.461965 | 3.2:+7279056 | MS.gene65718:CDS |
| GGTGGAGGAACAACCGTACT+AGG | 0.467128 | 3.2:-7277415 | None:intergenic |
| GGCTAGCAGAGGTGGTAGTA+AGG | 0.468988 | 3.2:+7278977 | MS.gene65718:CDS |
| GACTTGATCTTCTTCTTCGT+GGG | 0.486660 | 3.2:+7277302 | MS.gene65718:CDS |
| GATCTTCTTCTTCGTGGGAC+AGG | 0.486736 | 3.2:+7277307 | MS.gene65718:CDS |
| AAAACTCAAAGGACAAGATT+GGG | 0.491011 | 3.2:+7277129 | MS.gene65718:CDS |
| TGGGAATAGCAGAAAGCATA+AGG | 0.497144 | 3.2:+7278953 | MS.gene65718:CDS |
| TGAAGCATATGAATCAAAAT+GGG | 0.499206 | 3.2:+7277090 | MS.gene65718:CDS |
| AGACTTGATCTTCTTCTTCG+TGG | 0.502001 | 3.2:+7277301 | MS.gene65718:CDS |
| ATTCTTGTTGTGATGTTGGA+GGG | 0.502379 | 3.2:-7276967 | None:intergenic |
| GAGGCAAAAGAAAGAAACAA+TGG | 0.514233 | 3.2:+7278933 | MS.gene65718:CDS |
| TGAGCAGTTGTAATTGGTGG+AGG | 0.515009 | 3.2:-7277430 | None:intergenic |
| AGATTGAGTCCATGAAGAAA+AGG | 0.517431 | 3.2:+7277227 | MS.gene65718:CDS |
| AAGGTCAGAACAAACAAGAA+TGG | 0.526165 | 3.2:+7278996 | MS.gene65718:CDS |
| AGGCAAAAGAAAGAAACAAT+GGG | 0.536131 | 3.2:+7278934 | MS.gene65718:CDS |
| TATAGCTAACAAGAATCCAT+TGG | 0.536715 | 3.2:+7278819 | MS.gene65718:CDS |
| GATTCTTGTTGTGATGTTGG+AGG | 0.544639 | 3.2:-7276968 | None:intergenic |
| ATACACAACTTGAAATTGCT+AGG | 0.545633 | 3.2:+7279106 | MS.gene65718:CDS |
| CATAAGGTGGCTAGCAGAGG+TGG | 0.548999 | 3.2:+7278969 | MS.gene65718:CDS |
| CAGAGAACAATAACAACAAG+AGG | 0.552289 | 3.2:+7278914 | MS.gene65718:CDS |
| ACAACACTAAACAATAATCA+AGG | 0.555763 | 3.2:+7277343 | MS.gene65718:CDS |
| GAAGATGAGAGTTGAAGCTG+AGG | 0.581651 | 3.2:+7279038 | MS.gene65718:CDS |
| AAGCATAAGGTGGCTAGCAG+AGG | 0.587151 | 3.2:+7278966 | MS.gene65718:CDS |
| GTGCTGCTATCGGTTTCCAA+TGG | 0.590073 | 3.2:-7278835 | None:intergenic |
| AAAAGAGATGAATGGAGTGA+AGG | 0.593095 | 3.2:+7277049 | MS.gene65718:CDS |
| AGAAATAGAGCAAAACTCAA+AGG | 0.604235 | 3.2:+7277118 | MS.gene65718:CDS |
| GTTGAAGCTGAGGCAAAGAG+AGG | 0.612939 | 3.2:+7279048 | MS.gene65718:CDS |
| ACAACTGCTCAAAACTCACA+TGG | 0.614879 | 3.2:+7277442 | MS.gene65718:CDS |
| TGGTGTTGATAAATTAGTCA+AGG | 0.628166 | 3.2:+7277471 | MS.gene65718:CDS |
| TCAGCCACTAGCTCCTAGTA+CGG | 0.644324 | 3.2:+7277402 | MS.gene65718:CDS |
| GGAAACCGATAGCAGCACGC+CGG | 0.658154 | 3.2:+7278840 | MS.gene65718:CDS |
| ACAACCGTACTAGGAGCTAG+TGG | 0.669765 | 3.2:-7277406 | None:intergenic |
| AGATCAAGTCTAGAATACAA+AGG | 0.687202 | 3.2:-7277289 | None:intergenic |
| GAATAGCAGAAAGCATAAGG+TGG | 0.715377 | 3.2:+7278956 | MS.gene65718:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAAAATAAAT+TGG | - | chr3.2:7277880-7277899 | None:intergenic | 0.0% |
| !! | AATAAAATAATTTATATATT+CGG | + | chr3.2:7278256-7278275 | MS.gene65718:intron | 0.0% |
| !!! | TAATTTTTTATTTTATTTTT+AGG | + | chr3.2:7277637-7277656 | MS.gene65718:intron | 0.0% |
| !! | ATAGACTTAAAAAAAAATTA+TGG | + | chr3.2:7277676-7277695 | MS.gene65718:intron | 10.0% |
| !!! | ATTTATTTTAAAGAGTTTTA+TGG | + | chr3.2:7278097-7278116 | MS.gene65718:intron | 10.0% |
| !!! | TTTAAATATTGATTGTATAA+AGG | + | chr3.2:7278542-7278561 | MS.gene65718:intron | 10.0% |
| !! | ATAATAATCAAATTGTTAAG+TGG | + | chr3.2:7278286-7278305 | MS.gene65718:intron | 15.0% |
| !! | ATTTATGATTTCATATTTAC+AGG | + | chr3.2:7278765-7278784 | MS.gene65718:intron | 15.0% |
| !! | CAAAACAACAATATTATTAT+TGG | + | chr3.2:7277001-7277020 | MS.gene65718:CDS | 15.0% |
| !! | TAATAATCAAATTGTTAAGT+GGG | + | chr3.2:7278287-7278306 | MS.gene65718:intron | 15.0% |
| !! | TAGTATATGGTTAAAATAAA+TGG | - | chr3.2:7278374-7278393 | None:intergenic | 15.0% |
| !! | TTAATGCATATATAGTATAA+TGG | - | chr3.2:7278326-7278345 | None:intergenic | 15.0% |
| !! | TTGTTAAATATTAAAGTCAA+AGG | + | chr3.2:7277848-7277867 | MS.gene65718:intron | 15.0% |
| !! | AAAAAAATTAGTGCATATGT+TGG | + | chr3.2:7278409-7278428 | MS.gene65718:intron | 20.0% |
| !! | AAAAACAATGATCTTCATAT+AGG | - | chr3.2:7278006-7278025 | None:intergenic | 20.0% |
| !! | AACAATATTATTATTGGTAG+TGG | + | chr3.2:7277007-7277026 | MS.gene65718:CDS | 20.0% |
| !! | AACAGTGAAATATATATGAT+TGG | - | chr3.2:7278680-7278699 | None:intergenic | 20.0% |
| !! | ATAGTAAACTCAAATATCTT+TGG | - | chr3.2:7278627-7278646 | None:intergenic | 20.0% |
| !! | CTGAAAATTTATTTACAATG+TGG | + | chr3.2:7278722-7278741 | MS.gene65718:intron | 20.0% |
| !! | TAAACATGCATAATAGTATA+TGG | - | chr3.2:7278387-7278406 | None:intergenic | 20.0% |
| !! | TAGTAAACTCAAATATCTTT+GGG | - | chr3.2:7278626-7278645 | None:intergenic | 20.0% |
| !! | TATAATCTAAAGAAAATGTG+AGG | + | chr3.2:7278066-7278085 | MS.gene65718:intron | 20.0% |
| !!! | AGATCATTGTTTTTTTTTGA+AGG | + | chr3.2:7278012-7278031 | MS.gene65718:intron | 20.0% |
| !!! | AGTTTTATATGATTTTACCA+TGG | - | chr3.2:7278581-7278600 | None:intergenic | 20.0% |
| !!! | ATATTGTTGTTTTGTTTTCT+TGG | - | chr3.2:7276995-7277014 | None:intergenic | 20.0% |
| !!! | GATCATTGTTTTTTTTTGAA+GGG | + | chr3.2:7278013-7278032 | MS.gene65718:intron | 20.0% |
| !!! | GTTTTATATGATTTTACCAT+GGG | - | chr3.2:7278580-7278599 | None:intergenic | 20.0% |
| !!! | TATTTTTAGGACTAAAAAGT+AGG | + | chr3.2:7277650-7277669 | MS.gene65718:intron | 20.0% |
| !!! | TTTTTTTTCTTCTCTTTTGA+TGG | - | chr3.2:7278515-7278534 | None:intergenic | 20.0% |
| ! | AAAACTCACGACTAAAAATA+AGG | + | chr3.2:7277770-7277789 | MS.gene65718:intron | 25.0% |
| ! | ACAACACTAAACAATAATCA+AGG | + | chr3.2:7277343-7277362 | MS.gene65718:CDS | 25.0% |
| ! | ACTAAACAATAATCAAGGTT+TGG | + | chr3.2:7277348-7277367 | MS.gene65718:CDS | 25.0% |
| ! | ATTACAAAATTGCTTGTTCA+AGG | + | chr3.2:7277602-7277621 | MS.gene65718:intron | 25.0% |
| ! | TGAAGCATATGAATCAAAAT+GGG | + | chr3.2:7277090-7277109 | MS.gene65718:CDS | 25.0% |
| ! | TTGAAGCATATGAATCAAAA+TGG | + | chr3.2:7277089-7277108 | MS.gene65718:CDS | 25.0% |
| ! | TTTCACTCACATAATTAAGT+AGG | - | chr3.2:7277967-7277986 | None:intergenic | 25.0% |
| !! | AAGCAATTTTGTAATTTGGA+AGG | - | chr3.2:7277597-7277616 | None:intergenic | 25.0% |
| !! | GAACAAGCAATTTTGTAATT+TGG | - | chr3.2:7277601-7277620 | None:intergenic | 25.0% |
| !! | TGATTGTATAAAGGTACAAA+AGG | + | chr3.2:7278551-7278570 | MS.gene65718:intron | 25.0% |
| AAAACTCAAAGGACAAGATT+GGG | + | chr3.2:7277129-7277148 | MS.gene65718:CDS | 30.0% | |
| AGAAATAGAGCAAAACTCAA+AGG | + | chr3.2:7277118-7277137 | MS.gene65718:CDS | 30.0% | |
| AGAGACTAAAAAGAGATGAA+TGG | + | chr3.2:7277041-7277060 | MS.gene65718:CDS | 30.0% | |
| AGGCAAAAGAAAGAAACAAT+GGG | + | chr3.2:7278934-7278953 | MS.gene65718:CDS | 30.0% | |
| ATACACAACTTGAAATTGCT+AGG | + | chr3.2:7279106-7279125 | MS.gene65718:CDS | 30.0% | |
| ATGGATTCTTGTTAGCTATA+TGG | - | chr3.2:7278819-7278838 | None:intergenic | 30.0% | |
| GCAATAAGAAAATCATTCGA+AGG | - | chr3.2:7278193-7278212 | None:intergenic | 30.0% | |
| TATAGCTAACAAGAATCCAT+TGG | + | chr3.2:7278819-7278838 | MS.gene65718:CDS | 30.0% | |
| ! | AGATCAAGTCTAGAATACAA+AGG | - | chr3.2:7277292-7277311 | None:intergenic | 30.0% |
| ! | GTTGATTCATCATTGAGAAT+TGG | + | chr3.2:7279162-7279181 | MS.gene65718:CDS | 30.0% |
| ! | TGATCTATACCTTTTCTTCA+TGG | - | chr3.2:7277239-7277258 | None:intergenic | 30.0% |
| ! | TGGGAGAATGAATATTTTCA+TGG | - | chr3.2:7278607-7278626 | None:intergenic | 30.0% |
| !! | ATTATTATTGGTAGTGGAAG+TGG | + | chr3.2:7277013-7277032 | MS.gene65718:CDS | 30.0% |
| !! | TGGTGTTGATAAATTAGTCA+AGG | + | chr3.2:7277471-7277490 | MS.gene65718:CDS | 30.0% |
| !!! | TAATCAAGGTTTGGTTTTGT+TGG | + | chr3.2:7277357-7277376 | MS.gene65718:CDS | 30.0% |
| AAAAGAGATGAATGGAGTGA+AGG | + | chr3.2:7277049-7277068 | MS.gene65718:CDS | 35.0% | |
| AAGGTCAGAACAAACAAGAA+TGG | + | chr3.2:7278996-7279015 | MS.gene65718:CDS | 35.0% | |
| AGATTGAGTCCATGAAGAAA+AGG | + | chr3.2:7277227-7277246 | MS.gene65718:CDS | 35.0% | |
| CAAAACTCAAAGGACAAGAT+TGG | + | chr3.2:7277128-7277147 | MS.gene65718:CDS | 35.0% | |
| CAAAACTCACATGGATCAAA+TGG | + | chr3.2:7277451-7277470 | MS.gene65718:CDS | 35.0% | |
| CAGAGAACAATAACAACAAG+AGG | + | chr3.2:7278914-7278933 | MS.gene65718:CDS | 35.0% | |
| CTAGTTCAGATGTTTCATCT+TGG | + | chr3.2:7277266-7277285 | MS.gene65718:CDS | 35.0% | |
| GAACGCTGCTGAATAATTAT+TGG | + | chr3.2:7278470-7278489 | MS.gene65718:intron | 35.0% | |
| GAGGCAAAAGAAAGAAACAA+TGG | + | chr3.2:7278933-7278952 | MS.gene65718:CDS | 35.0% | |
| TTACACTGTGTTTGTGTCTT+TGG | - | chr3.2:7277202-7277221 | None:intergenic | 35.0% | |
| ! | ATTCTTGTTGTGATGTTGGA+GGG | - | chr3.2:7276970-7276989 | None:intergenic | 35.0% |
| ! | TTTTGAGCAGTTGTAATTGG+TGG | - | chr3.2:7277436-7277455 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAGCAGTTGTAAT+TGG | - | chr3.2:7277439-7277458 | None:intergenic | 35.0% |
| AAGGTACAAAAGGTTTCCCA+TGG | + | chr3.2:7278561-7278580 | MS.gene65718:intron | 40.0% | |
| ACAACTGCTCAAAACTCACA+TGG | + | chr3.2:7277442-7277461 | MS.gene65718:CDS | 40.0% | |
| AGACTTGATCTTCTTCTTCG+TGG | + | chr3.2:7277301-7277320 | MS.gene65718:CDS | 40.0% | |
| AGCTATATGGTCAGATGACT+TGG | - | chr3.2:7278806-7278825 | None:intergenic | 40.0% | |
| AGTACCTTAGTGCGTTACTT+AGG | + | chr3.2:7278434-7278453 | MS.gene65718:intron | 40.0% | |
| GACTTGATCTTCTTCTTCGT+GGG | + | chr3.2:7277302-7277321 | MS.gene65718:CDS | 40.0% | |
| TTGTCTCACTTGTCTAAGCA+AGG | - | chr3.2:7278220-7278239 | None:intergenic | 40.0% | |
| ! | CAAGTGAGACAATAACTTGC+AGG | + | chr3.2:7278228-7278247 | MS.gene65718:intron | 40.0% |
| ! | GAATAGCAGAAAGCATAAGG+TGG | + | chr3.2:7278956-7278975 | MS.gene65718:CDS | 40.0% |
| ! | GATTCTTGTTGTGATGTTGG+AGG | - | chr3.2:7276971-7276990 | None:intergenic | 40.0% |
| ! | GGTGATTCTTGTTGTGATGT+TGG | - | chr3.2:7276974-7276993 | None:intergenic | 40.0% |
| ! | TGGGAATAGCAGAAAGCATA+AGG | + | chr3.2:7278953-7278972 | MS.gene65718:CDS | 40.0% |
| GAAGATGAGAGTTGAAGCTG+AGG | + | chr3.2:7279038-7279057 | MS.gene65718:CDS | 45.0% | |
| GCATCCTAAGTAACGCACTA+AGG | - | chr3.2:7278441-7278460 | None:intergenic | 45.0% | |
| TGAGCAGTTGTAATTGGTGG+AGG | - | chr3.2:7277433-7277452 | None:intergenic | 45.0% | |
| TGAGGCAAAGAGAGGAGAAA+TGG | + | chr3.2:7279056-7279075 | MS.gene65718:CDS | 45.0% | |
| !! | TCTTTTTCGCTGTAAAGCGC+CGG | - | chr3.2:7278862-7278881 | None:intergenic | 45.0% |
| AAGCATAAGGTGGCTAGCAG+AGG | + | chr3.2:7278966-7278985 | MS.gene65718:CDS | 50.0% | |
| ACAACCGTACTAGGAGCTAG+TGG | - | chr3.2:7277409-7277428 | None:intergenic | 50.0% | |
| GATCTTCTTCTTCGTGGGAC+AGG | + | chr3.2:7277307-7277326 | MS.gene65718:CDS | 50.0% | |
| GTTGAAGCTGAGGCAAAGAG+AGG | + | chr3.2:7279048-7279067 | MS.gene65718:CDS | 50.0% | |
| TCAGCCACTAGCTCCTAGTA+CGG | + | chr3.2:7277402-7277421 | MS.gene65718:CDS | 50.0% | |
| !! | GTGCTGCTATCGGTTTCCAA+TGG | - | chr3.2:7278838-7278857 | None:intergenic | 50.0% |
| CATAAGGTGGCTAGCAGAGG+TGG | + | chr3.2:7278969-7278988 | MS.gene65718:CDS | 55.0% | |
| GGCTAGCAGAGGTGGTAGTA+AGG | + | chr3.2:7278977-7278996 | MS.gene65718:CDS | 55.0% | |
| GGTGGAGGAACAACCGTACT+AGG | - | chr3.2:7277418-7277437 | None:intergenic | 55.0% | |
| GGAAACCGATAGCAGCACGC+CGG | + | chr3.2:7278840-7278859 | MS.gene65718:CDS | 60.0% | |
| !! | AAGCGCCGGCGTGCTGCTAT+CGG | - | chr3.2:7278848-7278867 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 7276926 | 7279194 | 7276926 | ID=MS.gene65718 |
| chr3.2 | mRNA | 7276926 | 7279194 | 7276926 | ID=MS.gene65718.t1;Parent=MS.gene65718 |
| chr3.2 | exon | 7276926 | 7277492 | 7276926 | ID=MS.gene65718.t1.exon1;Parent=MS.gene65718.t1 |
| chr3.2 | CDS | 7276926 | 7277492 | 7276926 | ID=cds.MS.gene65718.t1;Parent=MS.gene65718.t1 |
| chr3.2 | exon | 7278787 | 7279194 | 7278787 | ID=MS.gene65718.t1.exon2;Parent=MS.gene65718.t1 |
| chr3.2 | CDS | 7278787 | 7279194 | 7278787 | ID=cds.MS.gene65718.t1;Parent=MS.gene65718.t1 |
| Gene Sequence |
| Protein sequence |
