Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34180.t1 | XP_013450797.1 | 97.4 | 700 | 18 | 0 | 1 | 700 | 1 | 700 | 0.00E+00 | 1336.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34180.t1 | Q9LII8 | 64.2 | 679 | 214 | 11 | 17 | 691 | 2 | 655 | 8.3e-232 | 804.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34180.t1 | A0A072U668 | 97.4 | 700 | 18 | 0 | 1 | 700 | 1 | 700 | 0.0e+00 | 1336.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene34180 | 0.824251 | 8.93E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene34180 | 0.822909 | 1.84E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene34180 | 0.819635 | 1.05E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene34180 | 0.839153 | 1.88E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene34180 | 0.825213 | 5.30E-54 | -1.69E-46 |
| MS.gene049501 | MS.gene34180 | 0.823675 | 1.22E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene34180 | 0.815227 | 1.03E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene34180 | 0.820506 | 6.62E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene34180 | 0.804351 | 2.25E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene34180 | 0.811085 | 8.35E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene34180 | 0.817652 | 2.95E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene34180 | 0.80291 | 4.48E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene34180 | 0.827228 | 1.76E-54 | -1.69E-46 |
| MS.gene050273 | MS.gene34180 | 0.828946 | 6.77E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene34180 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene34180 | 0.807446 | 5.03E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene34180 | 0.812878 | 3.40E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene34180 | 0.802368 | 5.80E-49 | -1.69E-46 |
| MS.gene050657 | MS.gene34180 | 0.81231 | 4.52E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene34180 | 0.82553 | 4.46E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene34180 | 0.863997 | 1.67E-64 | -1.69E-46 |
| MS.gene050808 | MS.gene34180 | 0.83587 | 1.30E-56 | -1.69E-46 |
| MS.gene050826 | MS.gene34180 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene34180 | 0.822282 | 2.58E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene34180 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene051180 | MS.gene34180 | 0.825414 | 4.75E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene34180 | 0.833655 | 4.71E-56 | -1.69E-46 |
| MS.gene051247 | MS.gene34180 | 0.814988 | 1.16E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene34180 | 0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene34180 | 0.874206 | 8.10E-68 | -1.69E-46 |
| MS.gene051388 | MS.gene34180 | 0.84379 | 1.13E-58 | -1.69E-46 |
| MS.gene05157 | MS.gene34180 | 0.803273 | 3.77E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene34180 | 0.861026 | 1.37E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene34180 | 0.850614 | 1.52E-60 | -1.69E-46 |
| MS.gene051744 | MS.gene34180 | 0.816257 | 6.07E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene34180 | 0.835202 | 1.93E-56 | -1.69E-46 |
| MS.gene052239 | MS.gene34180 | -0.817399 | 3.37E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene34180 | 0.808601 | 2.86E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene34180 | 0.849731 | 2.68E-60 | -1.69E-46 |
| MS.gene052519 | MS.gene34180 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene34180 | 0.832494 | 9.15E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene34180 | 0.812904 | 3.35E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene34180 | 0.804833 | 1.79E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene34180 | 0.84572 | 3.40E-59 | -1.69E-46 |
| MS.gene052773 | MS.gene34180 | 0.813032 | 3.14E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene34180 | 0.823217 | 1.56E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene34180 | 0.815413 | 9.37E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene34180 | 0.843012 | 1.82E-58 | -1.69E-46 |
| MS.gene053154 | MS.gene34180 | 0.802378 | 5.77E-49 | -1.69E-46 |
| MS.gene053164 | MS.gene34180 | 0.827521 | 1.49E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene34180 | 0.813039 | 3.13E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene34180 | 0.804182 | 2.44E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene34180 | 0.802406 | 5.70E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene34180 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene34180 | 0.834571 | 2.78E-56 | -1.69E-46 |
| MS.gene053599 | MS.gene34180 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene053621 | MS.gene34180 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene34180 | 0.801062 | 1.08E-48 | -1.69E-46 |
| MS.gene053894 | MS.gene34180 | 0.804961 | 1.68E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene34180 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene34180 | 0.819282 | 1.26E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene34180 | 0.81523 | 1.03E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene34180 | 0.813925 | 2.00E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene34180 | 0.810864 | 9.32E-51 | -1.69E-46 |
| MS.gene054570 | MS.gene34180 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene34180 | 0.851077 | 1.12E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene34180 | 0.803211 | 3.88E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene34180 | 0.813162 | 2.94E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene34180 | 0.833969 | 3.93E-56 | -1.69E-46 |
| MS.gene054775 | MS.gene34180 | 0.82449 | 7.85E-54 | -1.69E-46 |
| MS.gene054801 | MS.gene34180 | 0.842315 | 2.79E-58 | -1.69E-46 |
| MS.gene055144 | MS.gene34180 | 0.821015 | 5.05E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene34180 | 0.823641 | 1.24E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene34180 | 0.824614 | 7.34E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene34180 | 0.870197 | 1.75E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene34180 | 0.891178 | 5.04E-74 | -1.69E-46 |
| MS.gene055467 | MS.gene34180 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene34180 | 0.87049 | 1.40E-66 | -1.69E-46 |
| MS.gene055469 | MS.gene34180 | 0.834006 | 3.85E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene34180 | -0.813879 | 2.05E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene34180 | 0.848125 | 7.48E-60 | -1.69E-46 |
| MS.gene055725 | MS.gene34180 | 0.809876 | 1.52E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene34180 | 0.806668 | 7.36E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene34180 | 0.835037 | 2.12E-56 | -1.69E-46 |
| MS.gene055890 | MS.gene34180 | 0.807489 | 4.93E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene34180 | 0.806718 | 7.18E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene34180 | 0.839914 | 1.19E-57 | -1.69E-46 |
| MS.gene056050 | MS.gene34180 | 0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene056162 | MS.gene34180 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene34180 | 0.818884 | 1.55E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene34180 | 0.840489 | 8.43E-58 | -1.69E-46 |
| MS.gene056252 | MS.gene34180 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene34180 | 0.823053 | 1.70E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene34180 | 0.830571 | 2.72E-55 | -1.69E-46 |
| MS.gene056553 | MS.gene34180 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene34180 | 0.821779 | 3.37E-53 | -1.69E-46 |
| MS.gene056859 | MS.gene34180 | 0.817053 | 4.03E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene34180 | 0.808347 | 3.24E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene34180 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene34180 | 0.800531 | 1.38E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene34180 | 0.835739 | 1.41E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene34180 | 0.831225 | 1.88E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene34180 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene34180 | 0.844038 | 9.68E-59 | -1.69E-46 |
| MS.gene058037 | MS.gene34180 | 0.800826 | 1.20E-48 | -1.69E-46 |
| MS.gene058339 | MS.gene34180 | 0.838443 | 2.87E-57 | -1.69E-46 |
| MS.gene058360 | MS.gene34180 | 0.815201 | 1.04E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene34180 | 0.828694 | 7.80E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene34180 | 0.839371 | 1.65E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene34180 | 0.815783 | 7.75E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene34180 | 0.821032 | 5.01E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene34180 | 0.824819 | 6.57E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene34180 | 0.830632 | 2.63E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene34180 | 0.817253 | 3.63E-52 | -1.69E-46 |
| MS.gene059584 | MS.gene34180 | 0.819311 | 1.24E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene34180 | 0.825302 | 5.05E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene34180 | 0.824536 | 7.65E-54 | -1.69E-46 |
| MS.gene059863 | MS.gene34180 | 0.820732 | 5.87E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene34180 | 0.807094 | 5.98E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene34180 | 0.801563 | 8.49E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene34180 | -0.809763 | 1.61E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene34180 | 0.822849 | 1.90E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene34180 | 0.817289 | 3.56E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene34180 | 0.825323 | 4.99E-54 | -1.69E-46 |
| MS.gene060519 | MS.gene34180 | 0.815511 | 8.90E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene34180 | 0.846231 | 2.47E-59 | -1.69E-46 |
| MS.gene060587 | MS.gene34180 | 0.831839 | 1.33E-55 | -1.69E-46 |
| MS.gene060677 | MS.gene34180 | 0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene34180 | 0.801818 | 7.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34180.t1 | MTR_6g007110 | 97.429 | 700 | 18 | 0 | 1 | 700 | 1 | 700 | 0.0 | 1408 |
| MS.gene34180.t1 | MTR_6g007110 | 97.456 | 629 | 16 | 0 | 1 | 629 | 1 | 629 | 0.0 | 1270 |
| MS.gene34180.t1 | MTR_3g077950 | 62.649 | 589 | 198 | 6 | 128 | 698 | 182 | 766 | 0.0 | 759 |
| MS.gene34180.t1 | MTR_3g077950 | 50.980 | 102 | 49 | 1 | 1 | 102 | 1 | 101 | 3.28e-19 | 92.8 |
| MS.gene34180.t1 | MTR_3g077950 | 62.649 | 589 | 198 | 6 | 128 | 698 | 210 | 794 | 0.0 | 758 |
| MS.gene34180.t1 | MTR_3g077950 | 50.980 | 102 | 49 | 1 | 1 | 102 | 29 | 129 | 3.31e-19 | 92.8 |
| MS.gene34180.t1 | MTR_4g106900 | 54.674 | 706 | 266 | 8 | 1 | 688 | 1 | 670 | 0.0 | 728 |
| MS.gene34180.t1 | MTR_8g099745 | 66.535 | 508 | 169 | 1 | 186 | 693 | 68 | 574 | 0.0 | 719 |
| MS.gene34180.t1 | MTR_8g027385 | 62.257 | 514 | 188 | 3 | 182 | 693 | 49 | 558 | 0.0 | 662 |
| MS.gene34180.t1 | MTR_2g023050 | 88.235 | 102 | 12 | 0 | 598 | 699 | 3 | 104 | 3.36e-55 | 185 |
| MS.gene34180.t1 | MTR_1g070145 | 27.677 | 495 | 325 | 7 | 190 | 669 | 98 | 574 | 9.67e-45 | 170 |
| MS.gene34180.t1 | MTR_6g006830 | 83.673 | 49 | 8 | 0 | 421 | 469 | 19 | 67 | 7.97e-23 | 92.8 |
| MS.gene34180.t1 | MTR_6g006860 | 43.182 | 132 | 24 | 4 | 272 | 396 | 37 | 124 | 1.92e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34180.t1 | AT3G27960 | 64.559 | 680 | 210 | 13 | 17 | 691 | 2 | 655 | 0.0 | 842 |
| MS.gene34180.t1 | AT3G27960 | 64.559 | 680 | 210 | 13 | 17 | 691 | 2 | 655 | 0.0 | 842 |
| MS.gene34180.t1 | AT3G27960 | 64.078 | 618 | 192 | 12 | 17 | 629 | 2 | 594 | 0.0 | 759 |
| MS.gene34180.t1 | AT1G27500 | 57.433 | 639 | 257 | 6 | 55 | 688 | 14 | 642 | 0.0 | 726 |
| MS.gene34180.t1 | AT1G27500 | 57.433 | 639 | 257 | 6 | 55 | 688 | 25 | 653 | 0.0 | 726 |
| MS.gene34180.t1 | AT4G10840 | 62.741 | 518 | 181 | 3 | 186 | 693 | 79 | 594 | 0.0 | 683 |
| MS.gene34180.t1 | AT4G10840 | 62.115 | 454 | 161 | 2 | 186 | 629 | 79 | 531 | 0.0 | 598 |
| MS.gene34180.t1 | AT2G31240 | 27.386 | 482 | 337 | 6 | 190 | 665 | 116 | 590 | 1.40e-41 | 160 |
Find 133 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGAGGCTAGGACTATTT+TGG | 0.164311 | 6.3:-2920992 | MS.gene34180:CDS |
| CCGAACAAGGCTCTCAATTT+TGG | 0.194744 | 6.3:-2922152 | MS.gene34180:CDS |
| GCCACAATTTACTGTAATTT+AGG | 0.207749 | 6.3:-2922047 | MS.gene34180:CDS |
| GAAATTCAAGGGCAGGTCTT+AGG | 0.218691 | 6.3:-2921855 | MS.gene34180:CDS |
| GAATCACTTTGAATACTTCT+TGG | 0.258920 | 6.3:+2922653 | None:intergenic |
| TTCAATGCCTGCAATAAATA+TGG | 0.263096 | 6.3:-2922780 | None:intergenic |
| GGTCATCTTGTTGGATATAT+TGG | 0.291335 | 6.3:-2922485 | MS.gene34180:CDS |
| TTACCTTCCCATTGCATCAT+AGG | 0.291421 | 6.3:+2920909 | None:intergenic |
| ATCAAGGATTGATTCAGAAT+TGG | 0.298532 | 6.3:-2922507 | MS.gene34180:CDS |
| CTATAAACTCCTAAGGTATC+TGG | 0.302006 | 6.3:+2920946 | None:intergenic |
| TGCTTTAGAGCATTATGTTT+TGG | 0.303097 | 6.3:-2921631 | MS.gene34180:CDS |
| GCTGATCTATACAACAAAAT+AGG | 0.310358 | 6.3:-2921420 | MS.gene34180:CDS |
| GGAGTCATGTATTATATGTT+AGG | 0.311098 | 6.3:-2921168 | MS.gene34180:CDS |
| CACATCACCAATTCCAAACT+TGG | 0.316908 | 6.3:+2922083 | None:intergenic |
| TGTTGGATATATTGGTGATT+TGG | 0.328352 | 6.3:-2922477 | MS.gene34180:CDS |
| AACAAGAGATATGATATCTA+AGG | 0.338308 | 6.3:-2922183 | MS.gene34180:CDS |
| TTTGCAGGGTGTATGCAATT+AGG | 0.340480 | 6.3:-2921939 | MS.gene34180:CDS |
| TGTTGGGTGATTCTCTCCTT+TGG | 0.346775 | 6.3:+2921467 | None:intergenic |
| TGAAGATGGTAAACCAAGTT+TGG | 0.349399 | 6.3:-2922096 | MS.gene34180:CDS |
| CATGCACTAGCTAAGTTTGC+AGG | 0.349500 | 6.3:-2921954 | MS.gene34180:CDS |
| GGAGTTTATAGCAATCTTGC+AGG | 0.350985 | 6.3:-2920934 | MS.gene34180:CDS |
| AAATTCAAGGGCAGGTCTTA+GGG | 0.362813 | 6.3:-2921854 | MS.gene34180:CDS |
| AATTCTTCCATATTTATTGC+AGG | 0.368210 | 6.3:+2922773 | None:intergenic |
| CTTGTTATCTTTAACAAGAA+AGG | 0.373530 | 6.3:+2922200 | None:intergenic |
| AATCTCTTCTAGAGAGATTC+CGG | 0.373584 | 6.3:+2921335 | None:intergenic |
| AAAGTAGAAGTTTGCATAAG+AGG | 0.383062 | 6.3:-2922334 | MS.gene34180:CDS |
| TGCTGGAATTGAAGCACAAA+TGG | 0.389026 | 6.3:-2921190 | MS.gene34180:CDS |
| TCAATTGATTTAGCCATTGA+TGG | 0.390733 | 6.3:-2922632 | MS.gene34180:CDS |
| TCAGAATTGGGTCATCTTGT+TGG | 0.395318 | 6.3:-2922494 | MS.gene34180:CDS |
| TCAAGGATTGATTCAGAATT+GGG | 0.399811 | 6.3:-2922506 | MS.gene34180:CDS |
| CGTTTCTCATCATCGACATC+AGG | 0.409231 | 6.3:+2920563 | None:intergenic |
| TGGTAAACCAAGTTTGGAAT+TGG | 0.411399 | 6.3:-2922090 | MS.gene34180:CDS |
| AAGATATACAACAATGTTCC+TGG | 0.414393 | 6.3:-2921228 | MS.gene34180:CDS |
| ATCCATGAATGATATAGAAA+AGG | 0.416117 | 6.3:-2921277 | MS.gene34180:CDS |
| AACAAGAAAGGTCCGAGATC+AGG | 0.418100 | 6.3:+2922212 | None:intergenic |
| GTTCTGATCAATCGCCTTCA+AGG | 0.418245 | 6.3:-2922556 | MS.gene34180:CDS |
| CCAAAATTGAGAGCCTTGTT+CGG | 0.420334 | 6.3:+2922152 | None:intergenic |
| TCTCTAGAAGAGATTGCTAA+TGG | 0.423918 | 6.3:-2921327 | MS.gene34180:CDS |
| GGTCAACACAGTACTATTGC+TGG | 0.427720 | 6.3:-2921207 | MS.gene34180:CDS |
| AAGCAGGAAGAGCAAGGAAC+AGG | 0.427976 | 6.3:-2920517 | MS.gene34180:CDS |
| GCATAAGAGGCTTGGTTTGA+AGG | 0.433751 | 6.3:-2922261 | MS.gene34180:CDS |
| CCTCGTTAATAGCATACCTT+TGG | 0.436901 | 6.3:+2921028 | None:intergenic |
| GCCTGCATCGTTTGAAGAAG+CGG | 0.437353 | 6.3:-2921706 | MS.gene34180:CDS |
| GGACACAAGCAAGTCCCATT+TGG | 0.439623 | 6.3:+2921049 | None:intergenic |
| GTCTTTCATAATTTGAGAGT+TGG | 0.450435 | 6.3:+2920460 | None:intergenic |
| TCAATCGAACGCTCGAGAAT+CGG | 0.452266 | 6.3:+2922005 | None:intergenic |
| ATCTCTTCTAGAGAGATTCC+GGG | 0.453291 | 6.3:+2921336 | None:intergenic |
| ACTCATATGGCGAAGAATCA+AGG | 0.454260 | 6.3:-2922523 | MS.gene34180:CDS |
| TCCATGAATGATATAGAAAA+GGG | 0.457605 | 6.3:-2921276 | MS.gene34180:CDS |
| AGGTGATACTTATGCAATGA+TGG | 0.459547 | 6.3:-2921919 | MS.gene34180:CDS |
| TTTGAATTATGTAATGAAGA+TGG | 0.461930 | 6.3:-2922110 | MS.gene34180:CDS |
| AATGAGAAGGGAACTAGAAA+AGG | 0.463055 | 6.3:-2922311 | MS.gene34180:CDS |
| TTCTCAATAGCATCAACATT+CGG | 0.463708 | 6.3:+2922413 | None:intergenic |
| GAAATGTTGGAATATGTTGT+TGG | 0.465380 | 6.3:-2920617 | MS.gene34180:CDS |
| CCTAAGGTATCTGGATGATA+AGG | 0.466851 | 6.3:+2920955 | None:intergenic |
| CGATGATGCGATTGAAATGT+TGG | 0.468580 | 6.3:-2920630 | MS.gene34180:CDS |
| GGAATTGCATTGAACCAAAT+GGG | 0.469011 | 6.3:-2921063 | MS.gene34180:CDS |
| CTTGATATTCACAAGGGAAA+CGG | 0.471028 | 6.3:-2921732 | MS.gene34180:CDS |
| TGAAAGCTATACACCTCATA+AGG | 0.475448 | 6.3:-2922720 | MS.gene34180:CDS |
| CCTTATCATCCAGATACCTT+AGG | 0.477868 | 6.3:-2920955 | MS.gene34180:CDS |
| GGTGATGTGTCTTCATGTAT+TGG | 0.479362 | 6.3:-2922069 | MS.gene34180:CDS |
| TGGAATTGCATTGAACCAAA+TGG | 0.482345 | 6.3:-2921064 | MS.gene34180:CDS |
| CTTACTGTGAAAACGCCCTT+CGG | 0.483236 | 6.3:-2921377 | MS.gene34180:CDS |
| GCCGAGTTGTTAAAAGAAGC+AGG | 0.488102 | 6.3:-2920533 | MS.gene34180:CDS |
| AAGGGAACTAGAAAAGGAAA+TGG | 0.489596 | 6.3:-2922305 | MS.gene34180:CDS |
| GCAGTAAAGTTATCCTTATG+AGG | 0.489807 | 6.3:+2922707 | None:intergenic |
| AGCTAAGAAGCTGTGTCAAA+TGG | 0.495654 | 6.3:-2921757 | MS.gene34180:CDS |
| ATATGATGAGGAAGCATAAG+AGG | 0.497481 | 6.3:-2922274 | MS.gene34180:CDS |
| CAACAAAATAGGCAAGTTCA+AGG | 0.497660 | 6.3:-2921409 | MS.gene34180:CDS |
| GGACTCATCTGTGACTCAAA+AGG | 0.500548 | 6.3:-2921666 | MS.gene34180:CDS |
| ACAGCAGGACTTGAAATTCA+AGG | 0.502831 | 6.3:-2921867 | MS.gene34180:CDS |
| GCTTCGGTTGATTGTAGCAT+AGG | 0.507105 | 6.3:-2921567 | MS.gene34180:CDS |
| CTTGGACTTAGTGTACTCCT+TGG | 0.507878 | 6.3:+2922671 | None:intergenic |
| AGCGGCTGATCGGAGATTGA+TGG | 0.508307 | 6.3:-2921688 | MS.gene34180:CDS |
| ACTTCTCATTTCATAAACAT+TGG | 0.511524 | 6.3:+2922577 | None:intergenic |
| AGTATCTACAACACCATCAA+TGG | 0.515155 | 6.3:+2922619 | None:intergenic |
| ATGAGGAAGCATAAGAGGCT+TGG | 0.515392 | 6.3:-2922269 | MS.gene34180:CDS |
| GGTTATGGCGGAAAACCGTC+AGG | 0.515507 | 6.3:-2921601 | MS.gene34180:CDS |
| AGGCGATGCTTATTTATCGT+TGG | 0.515652 | 6.3:-2921547 | MS.gene34180:CDS |
| GCAGGAACCTATGATGCAAT+GGG | 0.518109 | 6.3:-2920916 | MS.gene34180:CDS |
| GGGGAAACTGATCCTCGATT+CGG | 0.522063 | 6.3:-2921834 | MS.gene34180:CDS |
| GCGGCTGATCGGAGATTGAT+GGG | 0.524259 | 6.3:-2921687 | MS.gene34180:CDS |
| TGCAGGAACCTATGATGCAA+TGG | 0.524517 | 6.3:-2920917 | MS.gene34180:CDS |
| AGGACTTGAAATTCAAGGGC+AGG | 0.524841 | 6.3:-2921862 | MS.gene34180:CDS |
| GCCGCTTCTTCAAACGATGC+AGG | 0.539483 | 6.3:+2921705 | None:intergenic |
| TCAGGAACTAGACGTTGCTT+CGG | 0.541301 | 6.3:-2921583 | MS.gene34180:CDS |
| GCTGGAATTGAAGCACAAAT+GGG | 0.544451 | 6.3:-2921189 | MS.gene34180:CDS |
| CTCGATTCGGTGAGACATGT+CGG | 0.555108 | 6.3:-2921821 | MS.gene34180:CDS |
| TGTGACAACAGAAAATAAAG+AGG | 0.555241 | 6.3:-2922438 | MS.gene34180:CDS |
| GAGTCATGTATTATATGTTA+GGG | 0.556961 | 6.3:-2921167 | MS.gene34180:CDS |
| CAGCAGGACTTGAAATTCAA+GGG | 0.565491 | 6.3:-2921866 | MS.gene34180:CDS |
| CGTTTGAAGAAGCGGCTGAT+CGG | 0.567330 | 6.3:-2921698 | MS.gene34180:CDS |
| AAGAGGCTTGGTTTGAAGGA+CGG | 0.569541 | 6.3:-2922257 | MS.gene34180:CDS |
| TTTGCATAAGAGGAATGAGA+AGG | 0.571407 | 6.3:-2922324 | MS.gene34180:CDS |
| GTTTCTTCAAGCACAAGGAT+CGG | 0.574004 | 6.3:-2922383 | MS.gene34180:CDS |
| GGTGATACTTATGCAATGAT+GGG | 0.574573 | 6.3:-2921918 | MS.gene34180:CDS |
| AAGATTGCTATAAACTCCTA+AGG | 0.575669 | 6.3:+2920939 | None:intergenic |
| TCCTAAATTACAGTAAATTG+TGG | 0.579760 | 6.3:+2922046 | None:intergenic |
| CAGACTTGTTCGAAGAGGCT+AGG | 0.582573 | 6.3:-2921002 | MS.gene34180:CDS |
| GAGTTAGATAATCCTGATCT+CGG | 0.583047 | 6.3:-2922224 | MS.gene34180:CDS |
| GTTTCTCATCATCGACATCA+GGG | 0.595343 | 6.3:+2920564 | None:intergenic |
| ACAAGAGATATGATATCTAA+GGG | 0.596104 | 6.3:-2922182 | MS.gene34180:CDS |
| TTCTGATCAATCGCCTTCAA+GGG | 0.597868 | 6.3:-2922555 | MS.gene34180:CDS |
| TGGGACTTGCTTGTGTCCAA+AGG | 0.597967 | 6.3:-2921044 | MS.gene34180:CDS |
| CGAACGCTCGAGAATCGGTA+TGG | 0.598027 | 6.3:+2922010 | None:intergenic |
| TAAAAGAAGCAGGAAGAGCA+AGG | 0.602086 | 6.3:-2920523 | MS.gene34180:CDS |
| GCAATAGTACTGTGTTGACC+AGG | 0.603485 | 6.3:+2921210 | None:intergenic |
| TCTCAAATTATGAAAGACAA+TGG | 0.610613 | 6.3:-2920455 | MS.gene34180:CDS |
| GTCGCGAAATTTCGTGCTAG+CGG | 0.612393 | 6.3:-2921108 | MS.gene34180:CDS |
| CGATGATGAGAAACGTAGGT+TGG | 0.613183 | 6.3:-2920555 | MS.gene34180:CDS |
| GGAATGAGAGAAGAGAAGCT+AGG | 0.614469 | 6.3:-2920596 | MS.gene34180:CDS |
| AATTCAAGGGCAGGTCTTAG+GGG | 0.616046 | 6.3:-2921853 | MS.gene34180:CDS |
| TTTGGCAAGCGTGGTTATGG+CGG | 0.616408 | 6.3:-2921613 | MS.gene34180:CDS |
| ATGCACTAGCTAAGTTTGCA+GGG | 0.620124 | 6.3:-2921953 | MS.gene34180:CDS |
| CGGTGAAGAATCGTCAAAGT+CGG | 0.621259 | 6.3:-2922363 | MS.gene34180:CDS |
| TCTTGACCATGCTCTAACAC+AGG | 0.621585 | 6.3:+2921978 | None:intergenic |
| TTGCATAAGAGGAATGAGAA+GGG | 0.622583 | 6.3:-2922323 | MS.gene34180:CDS |
| GATGTTCCTGTGTTAGAGCA+TGG | 0.625382 | 6.3:-2921984 | MS.gene34180:CDS |
| TTATTGTTTCTTCAAGCACA+AGG | 0.635722 | 6.3:-2922388 | MS.gene34180:CDS |
| CGACATGTCTCACCGAATCG+AGG | 0.638572 | 6.3:+2921822 | None:intergenic |
| GGCTGCAGACTTGTTCGAAG+AGG | 0.641904 | 6.3:-2921007 | MS.gene34180:CDS |
| AATGGCTCTTGATATTCACA+AGG | 0.649667 | 6.3:-2921739 | MS.gene34180:CDS |
| TTTCTTCCCGAAAATCCGAA+GGG | 0.655728 | 6.3:+2921362 | None:intergenic |
| GAACCTATGATGCAATGGGA+AGG | 0.656596 | 6.3:-2920912 | MS.gene34180:intron |
| TAAGGGTGAGAATCCGAACA+AGG | 0.657093 | 6.3:-2922165 | MS.gene34180:CDS |
| AAGCAACGTCTAGTTCCTGA+CGG | 0.661536 | 6.3:+2921586 | None:intergenic |
| CAGTGCTTGAACATGTGCCT+CGG | 0.663577 | 6.3:+2921791 | None:intergenic |
| GACATGTCGGTATGTAGCCG+AGG | 0.664489 | 6.3:-2921808 | MS.gene34180:CDS |
| ATGGCTCTTGATATTCACAA+GGG | 0.677786 | 6.3:-2921738 | MS.gene34180:CDS |
| CCAAAGGTATGCTATTAACG+AGG | 0.692619 | 6.3:-2921028 | MS.gene34180:CDS |
| CTGCTCAACAAGCATCACCA+AGG | 0.705437 | 6.3:-2922688 | MS.gene34180:CDS |
| ATGTCGATGATGAGAAACGT+AGG | 0.760306 | 6.3:-2920559 | MS.gene34180:CDS |
| TAATTTAGGACAGTACAGTG+AGG | 0.792554 | 6.3:-2922033 | MS.gene34180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAAAACAATGCAT+TGG | + | chr6.3:2922440-2922459 | None:intergenic | 15.0% |
| !! | TTTGAATTATGTAATGAAGA+TGG | - | chr6.3:2921105-2921124 | MS.gene34180:CDS | 20.0% |
| !!! | TTGTAATATGTTATTTGACA+TGG | + | chr6.3:2922464-2922483 | None:intergenic | 20.0% |
| ! | AAAAAATGCAAGGAGATTTA+AGG | + | chr6.3:2922345-2922364 | None:intergenic | 25.0% |
| ! | AAAAATGCAAGGAGATTTAA+GGG | + | chr6.3:2922344-2922363 | None:intergenic | 25.0% |
| ! | AACAAGAGATATGATATCTA+AGG | - | chr6.3:2921032-2921051 | MS.gene34180:CDS | 25.0% |
| ! | AATTCTTCCATATTTATTGC+AGG | + | chr6.3:2920445-2920464 | None:intergenic | 25.0% |
| ! | ACAAGAGATATGATATCTAA+GGG | - | chr6.3:2921033-2921052 | MS.gene34180:CDS | 25.0% |
| ! | ACTTCTCATTTCATAAACAT+TGG | + | chr6.3:2920641-2920660 | None:intergenic | 25.0% |
| ! | ATCCATGAATGATATAGAAA+AGG | - | chr6.3:2921938-2921957 | MS.gene34180:CDS | 25.0% |
| ! | GAGTCATGTATTATATGTTA+GGG | - | chr6.3:2922048-2922067 | MS.gene34180:CDS | 25.0% |
| ! | TCCATGAATGATATAGAAAA+GGG | - | chr6.3:2921939-2921958 | MS.gene34180:CDS | 25.0% |
| ! | TCCTAAATTACAGTAAATTG+TGG | + | chr6.3:2921172-2921191 | None:intergenic | 25.0% |
| ! | TCTCAAATTATGAAAGACAA+TGG | - | chr6.3:2922760-2922779 | MS.gene34180:CDS | 25.0% |
| !! | ATGGTTTTTACAATATGATG+AGG | - | chr6.3:2920929-2920948 | MS.gene34180:CDS | 25.0% |
| !! | CTTGTTATCTTTAACAAGAA+AGG | + | chr6.3:2921018-2921037 | None:intergenic | 25.0% |
| AAAGTAGAAGTTTGCATAAG+AGG | - | chr6.3:2920881-2920900 | MS.gene34180:intron | 30.0% | |
| AAGATATACAACAATGTTCC+TGG | - | chr6.3:2921987-2922006 | MS.gene34180:CDS | 30.0% | |
| AAGATTGCTATAAACTCCTA+AGG | + | chr6.3:2922279-2922298 | None:intergenic | 30.0% | |
| ATGTGCAGTTTGGATTATAT+CGG | - | chr6.3:2922399-2922418 | MS.gene34180:CDS | 30.0% | |
| CAGGAAATCAAAAAGATCAT+TGG | - | chr6.3:2922717-2922736 | MS.gene34180:CDS | 30.0% | |
| GAAATGTTGGAATATGTTGT+TGG | - | chr6.3:2922598-2922617 | MS.gene34180:CDS | 30.0% | |
| GAATCACTTTGAATACTTCT+TGG | + | chr6.3:2920565-2920584 | None:intergenic | 30.0% | |
| GATCAGAACAAAAAAATGCA+AGG | + | chr6.3:2922355-2922374 | None:intergenic | 30.0% | |
| GCCACAATTTACTGTAATTT+AGG | - | chr6.3:2921168-2921187 | MS.gene34180:CDS | 30.0% | |
| GCTGATCTATACAACAAAAT+AGG | - | chr6.3:2921795-2921814 | MS.gene34180:CDS | 30.0% | |
| GGAGTCATGTATTATATGTT+AGG | - | chr6.3:2922047-2922066 | MS.gene34180:CDS | 30.0% | |
| GTCTTTCATAATTTGAGAGT+TGG | + | chr6.3:2922758-2922777 | None:intergenic | 30.0% | |
| TGTGACAACAGAAAATAAAG+AGG | - | chr6.3:2920777-2920796 | MS.gene34180:intron | 30.0% | |
| TTCTCAATAGCATCAACATT+CGG | + | chr6.3:2920805-2920824 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCAAATCAACCAA+AGG | - | chr6.3:2921732-2921751 | MS.gene34180:CDS | 30.0% |
| ! | ACCCTTTTCTATATCATTCA+TGG | + | chr6.3:2921943-2921962 | None:intergenic | 30.0% |
| ! | ATCAAGGATTGATTCAGAAT+TGG | - | chr6.3:2920708-2920727 | MS.gene34180:intron | 30.0% |
| ! | TCAAGGATTGATTCAGAATT+GGG | - | chr6.3:2920709-2920728 | MS.gene34180:intron | 30.0% |
| ! | TCAATTGATTTAGCCATTGA+TGG | - | chr6.3:2920583-2920602 | MS.gene34180:CDS | 30.0% |
| ! | TGTTGGATATATTGGTGATT+TGG | - | chr6.3:2920738-2920757 | MS.gene34180:intron | 30.0% |
| ! | TTATTGTTTCTTCAAGCACA+AGG | - | chr6.3:2920827-2920846 | MS.gene34180:intron | 30.0% |
| !! | ACTATTTTGGAAAAGGAGTA+TGG | - | chr6.3:2922236-2922255 | MS.gene34180:CDS | 30.0% |
| !! | TTTGGATTATATCGGTTCAT+CGG | - | chr6.3:2922407-2922426 | MS.gene34180:CDS | 30.0% |
| !!! | TGCTTTAGAGCATTATGTTT+TGG | - | chr6.3:2921584-2921603 | MS.gene34180:CDS | 30.0% |
| AAGGGAACTAGAAAAGGAAA+TGG | - | chr6.3:2920910-2920929 | MS.gene34180:intron | 35.0% | |
| AATGAGAAGGGAACTAGAAA+AGG | - | chr6.3:2920904-2920923 | MS.gene34180:intron | 35.0% | |
| AATGGCTCTTGATATTCACA+AGG | - | chr6.3:2921476-2921495 | MS.gene34180:CDS | 35.0% | |
| ACAAAAACAGAAGCAACTGT+TGG | + | chr6.3:2921768-2921787 | None:intergenic | 35.0% | |
| AGGTGATACTTATGCAATGA+TGG | - | chr6.3:2921296-2921315 | MS.gene34180:CDS | 35.0% | |
| AGTATCTACAACACCATCAA+TGG | + | chr6.3:2920599-2920618 | None:intergenic | 35.0% | |
| ATCTCGACATAGTACTATCT+CGG | - | chr6.3:2922372-2922391 | MS.gene34180:CDS | 35.0% | |
| ATGGCTCTTGATATTCACAA+GGG | - | chr6.3:2921477-2921496 | MS.gene34180:CDS | 35.0% | |
| CAAAAACAGAAGCAACTGTT+GGG | + | chr6.3:2921767-2921786 | None:intergenic | 35.0% | |
| CAACAAAATAGGCAAGTTCA+AGG | - | chr6.3:2921806-2921825 | MS.gene34180:CDS | 35.0% | |
| CTTGATATTCACAAGGGAAA+CGG | - | chr6.3:2921483-2921502 | MS.gene34180:CDS | 35.0% | |
| GAGTTAGATAATCCTGATCT+CGG | - | chr6.3:2920991-2921010 | MS.gene34180:CDS | 35.0% | |
| GCAGTAAAGTTATCCTTATG+AGG | + | chr6.3:2920511-2920530 | None:intergenic | 35.0% | |
| GGAATTGCATTGAACCAAAT+GGG | - | chr6.3:2922152-2922171 | MS.gene34180:CDS | 35.0% | |
| GGTCATCTTGTTGGATATAT+TGG | - | chr6.3:2920730-2920749 | MS.gene34180:intron | 35.0% | |
| GGTGATACTTATGCAATGAT+GGG | - | chr6.3:2921297-2921316 | MS.gene34180:CDS | 35.0% | |
| TGAAAGCTATACACCTCATA+AGG | - | chr6.3:2920495-2920514 | MS.gene34180:CDS | 35.0% | |
| TGAAGATGGTAAACCAAGTT+TGG | - | chr6.3:2921119-2921138 | MS.gene34180:CDS | 35.0% | |
| TGGAATTGCATTGAACCAAA+TGG | - | chr6.3:2922151-2922170 | MS.gene34180:CDS | 35.0% | |
| TTGCATAAGAGGAATGAGAA+GGG | - | chr6.3:2920892-2920911 | MS.gene34180:intron | 35.0% | |
| TTTGCATAAGAGGAATGAGA+AGG | - | chr6.3:2920891-2920910 | MS.gene34180:intron | 35.0% | |
| ! | AATCTCTTCTAGAGAGATTC+CGG | + | chr6.3:2921883-2921902 | None:intergenic | 35.0% |
| ! | ATATGATGAGGAAGCATAAG+AGG | - | chr6.3:2920941-2920960 | MS.gene34180:CDS | 35.0% |
| ! | CTATAAACTCCTAAGGTATC+TGG | + | chr6.3:2922272-2922291 | None:intergenic | 35.0% |
| ! | GTCGAGTACTAGAATTTTTG+AGG | - | chr6.3:2922517-2922536 | MS.gene34180:CDS | 35.0% |
| ! | TAATTTAGGACAGTACAGTG+AGG | - | chr6.3:2921182-2921201 | MS.gene34180:CDS | 35.0% |
| ! | TCCTGCTTCTTTTAACAACT+CGG | + | chr6.3:2922686-2922705 | None:intergenic | 35.0% |
| ! | TCTCTACTGTTTTATACAGC+AGG | - | chr6.3:2921333-2921352 | MS.gene34180:CDS | 35.0% |
| ! | TCTCTAGAAGAGATTGCTAA+TGG | - | chr6.3:2921888-2921907 | MS.gene34180:CDS | 35.0% |
| ! | TGGTAAACCAAGTTTGGAAT+TGG | - | chr6.3:2921125-2921144 | MS.gene34180:CDS | 35.0% |
| !! | ATTTTCGGGAAGAAAAAACC+CGG | - | chr6.3:2921861-2921880 | MS.gene34180:CDS | 35.0% |
| !! | GAGAAAAAATCGGCTTTGTT+TGG | - | chr6.3:2922131-2922150 | MS.gene34180:CDS | 35.0% |
| !!! | AGGGCTAGTTTTTACTCATA+TGG | - | chr6.3:2920679-2920698 | MS.gene34180:intron | 35.0% |
| AAATTCAAGGGCAGGTCTTA+GGG | - | chr6.3:2921361-2921380 | MS.gene34180:CDS | 40.0% | |
| ACAGCAGGACTTGAAATTCA+AGG | - | chr6.3:2921348-2921367 | MS.gene34180:CDS | 40.0% | |
| ACTCATATGGCGAAGAATCA+AGG | - | chr6.3:2920692-2920711 | MS.gene34180:intron | 40.0% | |
| AGCTAAGAAGCTGTGTCAAA+TGG | - | chr6.3:2921458-2921477 | MS.gene34180:CDS | 40.0% | |
| AGGCGATGCTTATTTATCGT+TGG | - | chr6.3:2921668-2921687 | MS.gene34180:CDS | 40.0% | |
| ATGCACTAGCTAAGTTTGCA+GGG | - | chr6.3:2921262-2921281 | MS.gene34180:CDS | 40.0% | |
| ATGTCGATGATGAGAAACGT+AGG | - | chr6.3:2922656-2922675 | MS.gene34180:CDS | 40.0% | |
| CACATCACCAATTCCAAACT+TGG | + | chr6.3:2921135-2921154 | None:intergenic | 40.0% | |
| CAGCAGGACTTGAAATTCAA+GGG | - | chr6.3:2921349-2921368 | MS.gene34180:CDS | 40.0% | |
| CCTCGTTAATAGCATACCTT+TGG | + | chr6.3:2922190-2922209 | None:intergenic | 40.0% | |
| CCTTATCATCCAGATACCTT+AGG | - | chr6.3:2922260-2922279 | MS.gene34180:CDS | 40.0% | |
| CGATGATGCGATTGAAATGT+TGG | - | chr6.3:2922585-2922604 | MS.gene34180:CDS | 40.0% | |
| GAGTAAAAACTAGCCCTTGA+AGG | + | chr6.3:2920676-2920695 | None:intergenic | 40.0% | |
| GCTGGAATTGAAGCACAAAT+GGG | - | chr6.3:2922026-2922045 | MS.gene34180:CDS | 40.0% | |
| GGAGTTTATAGCAATCTTGC+AGG | - | chr6.3:2922281-2922300 | MS.gene34180:CDS | 40.0% | |
| GGTGATGTGTCTTCATGTAT+TGG | - | chr6.3:2921146-2921165 | MS.gene34180:CDS | 40.0% | |
| GTTTCTCATCATCGACATCA+GGG | + | chr6.3:2922654-2922673 | None:intergenic | 40.0% | |
| GTTTCTTCAAGCACAAGGAT+CGG | - | chr6.3:2920832-2920851 | MS.gene34180:intron | 40.0% | |
| TAAAAGAAGCAGGAAGAGCA+AGG | - | chr6.3:2922692-2922711 | MS.gene34180:CDS | 40.0% | |
| TCAGAATTGGGTCATCTTGT+TGG | - | chr6.3:2920721-2920740 | MS.gene34180:intron | 40.0% | |
| TGCTGGAATTGAAGCACAAA+TGG | - | chr6.3:2922025-2922044 | MS.gene34180:CDS | 40.0% | |
| TTACCTTCCCATTGCATCAT+AGG | + | chr6.3:2922309-2922328 | None:intergenic | 40.0% | |
| TTCTGATCAATCGCCTTCAA+GGG | - | chr6.3:2920660-2920679 | MS.gene34180:intron | 40.0% | |
| TTTCTTCCCGAAAATCCGAA+GGG | + | chr6.3:2921856-2921875 | None:intergenic | 40.0% | |
| TTTGCAGGGTGTATGCAATT+AGG | - | chr6.3:2921276-2921295 | MS.gene34180:CDS | 40.0% | |
| ! | ATCTCTTCTAGAGAGATTCC+GGG | + | chr6.3:2921882-2921901 | None:intergenic | 40.0% |
| ! | CCAAAGGTATGCTATTAACG+AGG | - | chr6.3:2922187-2922206 | MS.gene34180:CDS | 40.0% |
| ! | CCTAAGGTATCTGGATGATA+AGG | + | chr6.3:2922263-2922282 | None:intergenic | 40.0% |
| ! | TTTTCTTCCCGAAAATCCGA+AGG | + | chr6.3:2921857-2921876 | None:intergenic | 40.0% |
| !! | CCAAAATTGAGAGCCTTGTT+CGG | + | chr6.3:2921066-2921085 | None:intergenic | 40.0% |
| !! | GGCTAGGACTATTTTGGAAA+AGG | - | chr6.3:2922229-2922248 | MS.gene34180:CDS | 40.0% |
| AACAAGAAAGGTCCGAGATC+AGG | + | chr6.3:2921006-2921025 | None:intergenic | 45.0% | |
| AATTCAAGGGCAGGTCTTAG+GGG | - | chr6.3:2921362-2921381 | MS.gene34180:CDS | 45.0% | |
| AGGACTTGAAATTCAAGGGC+AGG | - | chr6.3:2921353-2921372 | MS.gene34180:CDS | 45.0% | |
| CATGCACTAGCTAAGTTTGC+AGG | - | chr6.3:2921261-2921280 | MS.gene34180:CDS | 45.0% | |
| CGATGATGAGAAACGTAGGT+TGG | - | chr6.3:2922660-2922679 | MS.gene34180:CDS | 45.0% | |
| CGGTGAAGAATCGTCAAAGT+CGG | - | chr6.3:2920852-2920871 | MS.gene34180:intron | 45.0% | |
| CGTTTCTCATCATCGACATC+AGG | + | chr6.3:2922655-2922674 | None:intergenic | 45.0% | |
| CTTACTGTGAAAACGCCCTT+CGG | - | chr6.3:2921838-2921857 | MS.gene34180:CDS | 45.0% | |
| CTTGGACTTAGTGTACTCCT+TGG | + | chr6.3:2920547-2920566 | None:intergenic | 45.0% | |
| GAAATTCAAGGGCAGGTCTT+AGG | - | chr6.3:2921360-2921379 | MS.gene34180:CDS | 45.0% | |
| GAACCTATGATGCAATGGGA+AGG | - | chr6.3:2922303-2922322 | MS.gene34180:CDS | 45.0% | |
| GATGCAATGGGAAGGTAACA+TGG | - | chr6.3:2922311-2922330 | MS.gene34180:CDS | 45.0% | |
| GATGTTCCTGTGTTAGAGCA+TGG | - | chr6.3:2921231-2921250 | MS.gene34180:CDS | 45.0% | |
| GCAGGAACCTATGATGCAAT+GGG | - | chr6.3:2922299-2922318 | MS.gene34180:CDS | 45.0% | |
| GCCGAGTTGTTAAAAGAAGC+AGG | - | chr6.3:2922682-2922701 | MS.gene34180:CDS | 45.0% | |
| GCTTCGGTTGATTGTAGCAT+AGG | - | chr6.3:2921648-2921667 | MS.gene34180:CDS | 45.0% | |
| GGAATGAGAGAAGAGAAGCT+AGG | - | chr6.3:2922619-2922638 | MS.gene34180:CDS | 45.0% | |
| GGACTCATCTGTGACTCAAA+AGG | - | chr6.3:2921549-2921568 | MS.gene34180:CDS | 45.0% | |
| GGTCAACACAGTACTATTGC+TGG | - | chr6.3:2922008-2922027 | MS.gene34180:CDS | 45.0% | |
| GTTCTGATCAATCGCCTTCA+AGG | - | chr6.3:2920659-2920678 | MS.gene34180:intron | 45.0% | |
| TAAGGGTGAGAATCCGAACA+AGG | - | chr6.3:2921050-2921069 | MS.gene34180:CDS | 45.0% | |
| TCAATCGAACGCTCGAGAAT+CGG | + | chr6.3:2921213-2921232 | None:intergenic | 45.0% | |
| TCAGGAACTAGACGTTGCTT+CGG | - | chr6.3:2921632-2921651 | MS.gene34180:CDS | 45.0% | |
| TCTTGACCATGCTCTAACAC+AGG | + | chr6.3:2921240-2921259 | None:intergenic | 45.0% | |
| TGCAGGAACCTATGATGCAA+TGG | - | chr6.3:2922298-2922317 | MS.gene34180:CDS | 45.0% | |
| TGCTAGCGGCGAGAAAAAAT+CGG | - | chr6.3:2922121-2922140 | MS.gene34180:CDS | 45.0% | |
| TGTTGGGTGATTCTCTCCTT+TGG | + | chr6.3:2921751-2921770 | None:intergenic | 45.0% | |
| ! | AAAACGCCCTTCGGATTTTC+GGG | - | chr6.3:2921847-2921866 | MS.gene34180:CDS | 45.0% |
| ! | AAGAGGCTTGGTTTGAAGGA+CGG | - | chr6.3:2920958-2920977 | MS.gene34180:CDS | 45.0% |
| ! | AAGCAACGTCTAGTTCCTGA+CGG | + | chr6.3:2921632-2921651 | None:intergenic | 45.0% |
| ! | ATGAGGAAGCATAAGAGGCT+TGG | - | chr6.3:2920946-2920965 | MS.gene34180:CDS | 45.0% |
| ! | CCGAACAAGGCTCTCAATTT+TGG | - | chr6.3:2921063-2921082 | MS.gene34180:CDS | 45.0% |
| ! | CGAAGAGGCTAGGACTATTT+TGG | - | chr6.3:2922223-2922242 | MS.gene34180:CDS | 45.0% |
| ! | GAAAACGCCCTTCGGATTTT+CGG | - | chr6.3:2921846-2921865 | MS.gene34180:CDS | 45.0% |
| ! | GCAATAGTACTGTGTTGACC+AGG | + | chr6.3:2922008-2922027 | None:intergenic | 45.0% |
| ! | GCATAAGAGGCTTGGTTTGA+AGG | - | chr6.3:2920954-2920973 | MS.gene34180:CDS | 45.0% |
| !!! | GCATTATGTTTTGGCAAGCG+TGG | - | chr6.3:2921593-2921612 | MS.gene34180:CDS | 45.0% |
| !!! | TGTTTTGGCAAGCGTGGTTA+TGG | - | chr6.3:2921599-2921618 | MS.gene34180:CDS | 45.0% |
| AAGCAGGAAGAGCAAGGAAC+AGG | - | chr6.3:2922698-2922717 | MS.gene34180:CDS | 50.0% | |
| CAGTGCTTGAACATGTGCCT+CGG | + | chr6.3:2921427-2921446 | None:intergenic | 50.0% | |
| CGTTTGAAGAAGCGGCTGAT+CGG | - | chr6.3:2921517-2921536 | MS.gene34180:CDS | 50.0% | |
| CTGCTCAACAAGCATCACCA+AGG | - | chr6.3:2920527-2920546 | MS.gene34180:CDS | 50.0% | |
| GCCTGCATCGTTTGAAGAAG+CGG | - | chr6.3:2921509-2921528 | MS.gene34180:CDS | 50.0% | |
| GGACACAAGCAAGTCCCATT+TGG | + | chr6.3:2922169-2922188 | None:intergenic | 50.0% | |
| GGGGAAACTGATCCTCGATT+CGG | - | chr6.3:2921381-2921400 | MS.gene34180:CDS | 50.0% | |
| GTCGCGAAATTTCGTGCTAG+CGG | - | chr6.3:2922107-2922126 | MS.gene34180:CDS | 50.0% | |
| TCTCGGTCTCATGTGCAGTT+TGG | - | chr6.3:2922389-2922408 | MS.gene34180:CDS | 50.0% | |
| TTTGGCAAGCGTGGTTATGG+CGG | - | chr6.3:2921602-2921621 | MS.gene34180:CDS | 50.0% | |
| ! | CAGACTTGTTCGAAGAGGCT+AGG | - | chr6.3:2922213-2922232 | MS.gene34180:CDS | 50.0% |
| ! | TGGGACTTGCTTGTGTCCAA+AGG | - | chr6.3:2922171-2922190 | MS.gene34180:CDS | 50.0% |
| !! | CTCGATTCGGTGAGACATGT+CGG | - | chr6.3:2921394-2921413 | MS.gene34180:CDS | 50.0% |
| AGCGGCTGATCGGAGATTGA+TGG | - | chr6.3:2921527-2921546 | MS.gene34180:CDS | 55.0% | |
| CGAACGCTCGAGAATCGGTA+TGG | + | chr6.3:2921208-2921227 | None:intergenic | 55.0% | |
| CGACATGTCTCACCGAATCG+AGG | + | chr6.3:2921396-2921415 | None:intergenic | 55.0% | |
| GACATGTCGGTATGTAGCCG+AGG | - | chr6.3:2921407-2921426 | MS.gene34180:CDS | 55.0% | |
| GCCGCTTCTTCAAACGATGC+AGG | + | chr6.3:2921513-2921532 | None:intergenic | 55.0% | |
| GCGGCTGATCGGAGATTGAT+GGG | - | chr6.3:2921528-2921547 | MS.gene34180:CDS | 55.0% | |
| ! | GGCTGCAGACTTGTTCGAAG+AGG | - | chr6.3:2922208-2922227 | MS.gene34180:CDS | 55.0% |
| ! | GGTTATGGCGGAAAACCGTC+AGG | - | chr6.3:2921614-2921633 | MS.gene34180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 2920439 | 2922798 | 2920439 | ID=MS.gene34180 |
| chr6.3 | mRNA | 2920439 | 2922798 | 2920439 | ID=MS.gene34180.t1;Parent=MS.gene34180 |
| chr6.3 | exon | 2920913 | 2922798 | 2920913 | ID=MS.gene34180.t1.exon1;Parent=MS.gene34180.t1 |
| chr6.3 | CDS | 2920913 | 2922798 | 2920913 | ID=cds.MS.gene34180.t1;Parent=MS.gene34180.t1 |
| chr6.3 | exon | 2920439 | 2920655 | 2920439 | ID=MS.gene34180.t1.exon2;Parent=MS.gene34180.t1 |
| chr6.3 | CDS | 2920439 | 2920655 | 2920439 | ID=cds.MS.gene34180.t1;Parent=MS.gene34180.t1 |
| Gene Sequence |
| Protein sequence |
