AlfalfaGEDB | MS.gene96073

M. sativa cultivar XinJiangDaYe / MS.gene96073

KEGG: K13254
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00004.32 PF17862.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96073.t1	XP_003623772.1	98.9	439	5	0	14	452	48	486	2.40E-239	837.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96073.t1	Q5ZK92	52.3	352	154	4	106	450	265	609	7.8e-90	332.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96073.t1	G7L0E6	98.9	439	5	0	14	452	48	486	1.7e-239	837.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene96073	0.81782	2.70E-52	-1.69E-46
MS.gene049159	MS.gene96073	0.856537	3.01E-62	-1.69E-46
MS.gene049254	MS.gene96073	0.809743	1.63E-50	-1.69E-46
MS.gene049368	MS.gene96073	0.802463	5.54E-49	-1.69E-46
MS.gene049404	MS.gene96073	0.801668	8.08E-49	-1.69E-46
MS.gene049435	MS.gene96073	0.832872	7.38E-56	-1.69E-46
MS.gene049452	MS.gene96073	0.826937	2.06E-54	-1.69E-46
MS.gene049983	MS.gene96073	0.802239	6.17E-49	-1.69E-46
MS.gene050442	MS.gene96073	0.838779	2.35E-57	-1.69E-46
MS.gene050680	MS.gene96073	0.814334	1.62E-51	-1.69E-46

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene003453	MS.gene96073	PPI
MS.gene43053	MS.gene96073	PPI
MS.gene52138	MS.gene96073	PPI
MS.gene96073	MS.gene034471	PPI
MS.gene96073	MS.gene058031	PPI
MS.gene96073	MS.gene35394	PPI

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96073.t1	MTR_7g075520	98.451	452	6	1	1	452	36	486	0.0	917
MS.gene96073.t1	MTR_6g023875	48.495	299	148	4	158	451	362	659	2.71e-98	308
MS.gene96073.t1	MTR_6g023855	48.299	294	145	4	164	451	232	524	1.04e-96	300
MS.gene96073.t1	MTR_6g023865	41.274	361	176	8	112	449	100	447	5.97e-87	274
MS.gene96073.t1	MTR_4g053350	43.168	322	150	4	161	450	110	430	6.49e-81	257
MS.gene96073.t1	MTR_2g086160	42.991	321	150	4	162	450	116	435	7.14e-81	257
MS.gene96073.t1	MTR_4g053350	43.168	322	150	4	161	450	110	430	8.11e-81	256
MS.gene96073.t1	MTR_4g011810	38.281	384	210	8	86	451	154	528	2.14e-77	250
MS.gene96073.t1	MTR_4g096870	51.012	247	117	3	163	407	104	348	1.77e-76	244
MS.gene96073.t1	MTR_2g086160	51.724	232	109	3	162	392	116	345	3.21e-76	242

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96073.t1	AT2G45500	74.833	449	105	2	12	452	43	491	0.0	676
MS.gene96073.t1	AT2G45500	75.000	448	102	3	12	452	43	487	0.0	668
MS.gene96073.t1	AT2G45500	75.000	448	102	3	12	452	53	497	0.0	668
MS.gene96073.t1	AT2G45500	84.590	305	47	0	148	452	50	354	0.0	539
MS.gene96073.t1	AT2G45500	84.590	305	47	0	148	452	50	354	0.0	539
MS.gene96073.t1	AT3G27120	49.833	299	144	4	158	451	380	677	4.18e-99	311
MS.gene96073.t1	AT2G27600	43.478	322	149	4	161	450	112	432	9.38e-81	256
MS.gene96073.t1	AT1G80350	43.910	312	154	6	157	451	215	522	6.59e-79	254
MS.gene96073.t1	AT2G34560	44.000	300	153	6	163	451	85	380	2.79e-75	241
MS.gene96073.t1	AT2G34560	44.000	300	153	6	163	451	94	389	3.76e-75	241

Showing 1 to 10 of 109 entries

Previous1 2 3 4 5…11Next

Find 95 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAGCTTTAATGGAGA+TGG	0.543064	7.4:+29872197	MS.gene96073:CDS
AAAGGCAAAGCAAGCTTTAA+TGG	0.312478	7.4:+29872191	MS.gene96073:CDS
AAATCCAGGTGGCCTGGAAA+AGG	0.456194	7.4:+29872173	MS.gene96073:intron
AACAAGTCTCTTCTCTTTGT+TGG	0.337816	7.4:-29872228	None:intergenic
AACCAATAAGCCACAGGAAT+TGG	0.397626	7.4:+29874116	MS.gene96073:CDS
AAGAGAAGAGACTTGTTCAC+TGG	0.560846	7.4:+29872234	MS.gene96073:CDS
AAGAGATCGATAAAGCTGTT+AGG	0.394509	7.4:+29870211	MS.gene96073:CDS
AAGCTGTTAGGGCTGAAGAA+TGG	0.453233	7.4:+29870223	MS.gene96073:CDS
AAGGACGACAAATGAAAATG+AGG	0.591136	7.4:+29873337	MS.gene96073:CDS
AAGTTTAAACAAAAGTAAAT+GGG	0.518697	7.4:+29875174	MS.gene96073:CDS

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGAAGAGAGTTAGTA+AGG	-	chr7.4:29874375-29874394	None:intergenic	30.0%
AAACTCAACACAAACAAGTT+AGG	-	chr7.4:29872521-29872540	None:intergenic	30.0%
AACTCAACACAAACAAGTTA+GGG	-	chr7.4:29872520-29872539	None:intergenic	30.0%
AAGATAGGAGTAAACTTTAG+AGG	+	chr7.4:29873782-29873801	MS.gene96073:intron	30.0%
AATTCCTTATCCAGTTTGAT+GGG	+	chr7.4:29873381-29873400	MS.gene96073:CDS	30.0%
ACGTTTCACTGAACATTATT+GGG	+	chr7.4:29871806-29871825	MS.gene96073:intron	30.0%
AGAACGTAGATGTAAAAATG+GGG	+	chr7.4:29872880-29872899	MS.gene96073:intron	30.0%
AGCTTCTCAATAAGAACTTA+TGG	+	chr7.4:29870960-29870979	MS.gene96073:intron	30.0%
AGTCAAAACGGAATTCAAAA+AGG	-	chr7.4:29871577-29871596	None:intergenic	30.0%
ATATGGCCTCTATTTATTGA+TGG	+	chr7.4:29873916-29873935	MS.gene96073:intron	30.0%

Showing 1 to 10 of 307 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	29870123	29875237	29870123	ID=MS.gene96073
chr7.4	mRNA	29870123	29875237	29870123	ID=MS.gene96073.t1;Parent=MS.gene96073
chr7.4	exon	29870123	29870340	29870123	ID=MS.gene96073.t1.exon1;Parent=MS.gene96073.t1
chr7.4	CDS	29870123	29870340	29870123	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29871456	29871547	29871456	ID=MS.gene96073.t1.exon2;Parent=MS.gene96073.t1
chr7.4	CDS	29871456	29871547	29871456	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29871662	29871681	29871662	ID=MS.gene96073.t1.exon3;Parent=MS.gene96073.t1
chr7.4	CDS	29871662	29871681	29871662	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29871888	29872107	29871888	ID=MS.gene96073.t1.exon4;Parent=MS.gene96073.t1
chr7.4	CDS	29871888	29872107	29871888	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29872181	29872276	29872181	ID=MS.gene96073.t1.exon5;Parent=MS.gene96073.t1
chr7.4	CDS	29872181	29872276	29872181	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29872381	29872496	29872381	ID=MS.gene96073.t1.exon6;Parent=MS.gene96073.t1
chr7.4	CDS	29872381	29872496	29872381	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29872601	29872681	29872601	ID=MS.gene96073.t1.exon7;Parent=MS.gene96073.t1
chr7.4	CDS	29872601	29872681	29872601	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29873317	29873440	29873317	ID=MS.gene96073.t1.exon8;Parent=MS.gene96073.t1
chr7.4	CDS	29873317	29873440	29873317	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29874112	29874161	29874112	ID=MS.gene96073.t1.exon9;Parent=MS.gene96073.t1
chr7.4	CDS	29874112	29874161	29874112	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29874407	29874497	29874407	ID=MS.gene96073.t1.exon10;Parent=MS.gene96073.t1
chr7.4	CDS	29874407	29874497	29874407	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29874736	29874771	29874736	ID=MS.gene96073.t1.exon11;Parent=MS.gene96073.t1
chr7.4	CDS	29874736	29874771	29874736	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29874913	29875010	29874913	ID=MS.gene96073.t1.exon12;Parent=MS.gene96073.t1
chr7.4	CDS	29874913	29875010	29874913	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1
chr7.4	exon	29875121	29875237	29875121	ID=MS.gene96073.t1.exon13;Parent=MS.gene96073.t1
chr7.4	CDS	29875121	29875237	29875121	ID=cds.MS.gene96073.t1;Parent=MS.gene96073.t1

Gene Sequence

>MS.gene96073

ATGGAAGCTTCACCTTCTTCTCCTTCTTCTTCGGTTTCAAACGAACGCGTCGCGTATAAGCTGAAAGGCTACTACGATTTAGCAACACAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGTTTGGTCGATGACGCTATTCTTCACTACAGGAATGCTCATAGGATCCTTCTCGAAGCTAGTTCTACTCCTGTTCCTTCATTCATCACTCCCAGGTGAGGTTTCTGCTATATTAATGATGGGTTTTTAATATGATTGATGAAAAATTTGAAATTTGAATGATTTGTTTATGTGGGTTATTGATTATTTGTCTTTTTTCATTGATTAGTTGAAGGGGAGAAAAATGGTATATGGGGTTATTGAATTTTTGATTTAATATTTGTGTTGTTGGCAAAAGCATTAATCTTGTTAGGACGAATGTGAAATTTTATGATTTTTGAATTGCACAAAAAAATTAGTGTTTTAATCTCTTAGAGTTGTTCTTAGTTTGGTGCTAGCTAGGATGTTATCTTGTTAGAGTATGTTTGGATTAACAATGAGTTTGACGAAATCACATTGCGCCATAGTGGTTTTTACAAAAGCTATACTGGTTGTCCTTAGTTTGGTGCTAGCTAGGATGTTGTCGTGTTAGAGTATGTTTGGATTAACGTTGAGTTTGATGAATTCACAGTGTGCCATAGTGGTTTTGACAAAAGCTATACTTTGGAGCATCGATAAAATCTCATGATCATGGTGATTTTGTCAAATTCGCTACTAATCCAAAATCAAAGTTGAATAATAGCATTGCTAAACCTTAATTACTGTCAATTGAAGACTTGGAGCTAGTTTAGATTAAGCTTCTCAATAAGAACTTATGGAAACAGAAATATAAAAATAATCTTGCAATAATGAGTTTTTTAAACGATAGCTTCCTGTACAAGTTAAAATCTCTCTATTTTTGGAAGCATTCTCATGTATCTTCATTCTTCTCTCCATAAACGTATGTAAGTTTGTAATTTTTTGTAAGTGAAGAACCATAAATTTATTTTAATTGAGAAGCTTTCATAAGCTAAAAGTTAATCCAATTTCGGTCTTAGTTATAATAGCAGATTTCTGATATTCGGTATCTTGCATTCCCCATTCTTGTTTTGCTGCATCTTTTCAGTTTCCAAATTGCACCCGAATTCAGTGAGTTAATCATAAGGGACAGCCTTTGGCTATGTGACAGCTTAGATATAGTACACTCACTTCATTTACACTGTTCCTTAGTAACTTGATGACAAAGGAAGATTCCTATGATCTTATGTTTTTGTTGGTTACTTACTAGAATCCATAATCTTGTGTGTGACAGTGAGAAACAGAAAGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTTTCTGAGAGATTGCAGGCTCTCAGTAGACGAGCAGGTTTGCATCTGTTTCAGCAACTGTCTCCTTTTTGAATTCCGTTTTGACTTTTACGAGAATTCTTGTTGTTTTTCGTCATCCTCATTTGTTCCTATTCCTCTTTTTCCATTCCAGGTAGCTCATTTGCCAATCAGGTATGCTATGTTCTCTGTAAACTGTAAGTACAGGGTTTTTTCTTTTCCTCGTTTTGGCTTCAACAAAATCAGTGCTTCTTAAAACATATTGTGTTGTTTTTCATCGTACTTAAATATGCACTGTACGTTTCACTGAACATTATTGGGTACTGGTTTTATGATTACATGAGCCATTAATATTCCTTTTTCTCCAAAAATGTTTGTAGAGCACCTCAAACCGTGCACAAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTGCTACAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAGCCCGAAACCTAGTCAAACATCTGGTGAAAATTATGATACGAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTTCGATGGGACGATGTTGGTAAGATGTGATGCACATCTGCTTTTTACTTTTATGTGTTACCATTTGTTTGATTCTTATTATCGAAATCCAGGTGGCCTGGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACAAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGACCAGCTAGAGGTATTGCCTTGGAACCTTGTCTCTTTGGGTTATGTAATAGACAATGATCTAAATTGTAGAATGAAAATGCAAAATGTTGAAACTGATGAACCTTTTCATTTTAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTACTTTTTTTATCTATATACCCTAACTTGTTTGTGTTGAGTTTCATTTCATTTTAAGACTTAAGAAGTGTAACCATGGTTAACTTGTACTCACTACTCAATAGGTGGGTGAAGCTGAAAAGCTTGTACGGACACTATTCTTGGTAGCTGTATCGAGACAGCCATCTGTAATTTTCATTGATGAGGTATCTCTCTCATCTATATAGAAAGGACCCCCACCCCCTACTCCTGCTATAAATTTGGCAACAAGTCATGAAAACTATAATTCTTTGAGGACGTTCTTCAATAACTATATGATGAACAGAACCCTTGTATTAAATGATTTTTTGTTTAATGCTTGGTTTGGAGTGCAACTCTAATTGATTATTGGACTATAATTTTTAAGAACGTAGATGTAAAAATGGGGTGGCTAAGGATCTCTTTTGATAAACTTCTTGGGTGTTTTCATCTTCTAATTAAAATAGGTATATGACTGCACCACCAAAAAAAAAAGGTAGATTACTTAAATATTTATGAAGACTGTTGAAAAATGTACACTACTCCAGCGTCTTTTTTGAATGTCAGTAAGATTATTTCTGTCAAACATGTCTATCCAGATTTTTAATCATTTCCACAAGACCAATATAATTTGACAAGCACTATCATCAATTGTCCTAAATCTAGTCACTTACGATATCTGCATTGTAATTTTATGCTATCTTGTGTTTAATTAGTTAAATAGATGGATTTACTAAACAGAAAGAAAAGGTTGAATGCTTCGTGTCTAAATTTTCTCCACTTCATTCAAATGATATTAATGTTCTTTTTTATCTGACAACAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGACATTGTGATTGTAATTGGTAAGCATTACATCTGATATTAATCATTCTCTATCTGTAATGAACATGGTTTAGACTTTAGATCAGCATGTCTACCATGAACAGTGCTCTTGTTAATCTATTTTGGGATAGCTGCAGTTGCTCTCTCATCTTTGTTCCCCTTTGACAAATGACTTTATGTGGTTAAAATTCTCTTCTAGGGAATGCTGGAATTCGAAAAACTCATGGGAAACATAATAATATGATTTTTCTGAAAACGATCGTATGAATGATGTAATGTTATTTTTCTTTTAAACGTGTACAATGCAATTATAATTATTAGATGGGCTTTGGGATTGTTCCAGAAGAACTCGGCTGCTCTAAAGATAGGAGTAAACTTTAGAGGAGTCAAACCTATAACATCGTTACAGAATGATTCTTTTTCCTATCTTGTTTTCACTTTTAAATTCAGTTGTATCTCCCACATATGGTTTCCATTGTAATCTGCCTCCTGAGAATATGGCCTCTATTTATTGATGGATGAAAAACTAAACTGTGGCTATTGTAAATCTGGAATTGCTTGCTTTTTAGATTTTGTTTTTTAATTTCATAAAATGTCATAAGCTAGTAATTATCATGTGTGATGAGTCTCTGCTCGTGTAACTATTAGTCTCATTAAACTTGTATAAATTTCCTTTCCCTTCTGAATATAGGTGCAACCAATAAGCCACAGGAATTGGATGATGCCGTTCTTAGGAGACTGGTGAGAATTTCTTCATTGTCCTTTACTGGATTAAAAGTATGATATAATTCCAGAATGTCATATTGCCGATGTGACTTTAAGTGGAGAATGTTTTATCACTTAGAATTAAATGATCATCTAGTTCGAATTTTGTAAGAAAAATGTGTGTTAGAAAATGTGTTTATAACAACACTCTTGACTTAATAATCGTTTTTTCGCATTGATATGATTCCTTACTAACTCTCTTCTTGTTTTTACTGTGCTAGGTTAAGAGAATATATGTACCTTTACCAAATGAAAATGTTAGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCGTTCTCCTTACCTAGTAAGCGACGTGCTCTTTTTACCCCTCGATACTAAACTTTTATATGCATATTCTTGGAGGCACCGGAAGGCGGAACATGCAAAAAAATTACCAATTGGGAGTTTATAATTTGTTTTGTACACTTTTAACTTTCTACGCGGACATTTCATAAAATTAAGATAAATAATAATATTATTGTAATATTATATTACTAACACTACTCTAGTTTAACTAAAAACTTACGATTTTTTTGTTACAGGTAGAGATCTAGAGATGCTGGTAAAAGAAACCGAAGGTAAGTATAGATTTTGAGTCACGATGAAAAGGAAATTAATATGTTGAAATATTCTTTTCCTTTTCTCTCTTCTTTGTTTTATTGTGTCCAAAATTTGGGCACCAAATATGATTCATTATTTTTGTTTTGCATGGTTTACAGGATACTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTTCTAACATTCTCACCATCAAGGCAAATCAGGCATGCTGTTTTCAAACCACTTTAATTTTTTTGTTGCGCACTATTATTAATCTTTTAAGCGAAAATCTTCCTTTGTTGTTAAGGTTAATTATTTTTTTTGGTTTTACCAGGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAGATGGAATGAGGAGTTTGGTTCAAATTGA

Protein sequence

>MS.gene96073.t1

MEASPSSPSSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLVDDAILHYRNAHRILLEASSTPVPSFITPSEKQKVQSYRQKISKWQGQVSERLQALSRRAGSSFANQSTSNRAQTAAVPTKLSNTTKKVLQKNPQRKDEVNKVQSPKPSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFLVAVSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTIKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELERWNEEFGSN