AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061362


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061362.t1 MTR_4g007180 94.722 360 19 0 17 376 17 376 0.0 696
MS.gene061362.t1 MTR_2g105100 72.543 346 95 0 31 376 51 396 0.0 526
MS.gene061362.t1 MTR_5g009640 65.700 207 52 1 170 376 168 355 2.62e-89 273
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061362.t1 AT1G62640 65.464 388 114 4 6 375 18 403 0.0 518
MS.gene061362.t1 AT1G62640 65.464 388 114 4 6 375 18 403 0.0 518

Find 72 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAAACGTCGAGTTCTTTC+AGG 0.225004 8.2:-83077558 MS.gene061362:intron
CATGAATATGAATACTTCTT+TGG 0.249673 8.2:+83075587 None:intergenic
CCACTACATCAATAATTCTT+TGG 0.266849 8.2:+83075276 None:intergenic
ATTATTGCTGCTTCTGGCTT+TGG 0.274041 8.2:-83075125 MS.gene061362:CDS
TAATGCATCAGACTCAATTA+AGG 0.282247 8.2:-83075627 MS.gene061362:CDS
AGTTAGAAGTGGAAAGATTA+AGG 0.293816 8.2:-83075156 MS.gene061362:CDS
GGACAAATTATTGCTGCTTC+TGG 0.294045 8.2:-83075131 MS.gene061362:CDS
GCTTTGGTGCTGGTCTTACT+TGG 0.297418 8.2:-83075109 MS.gene061362:CDS
TTTCAAAATGTTCTTGTAAT+CGG 0.300523 8.2:-83076241 MS.gene061362:CDS
GCATGTAGTGGATTTATCTT+TGG 0.313034 8.2:-83076384 MS.gene061362:CDS
TATCAGCTGCTAGTCACATT+AGG 0.325626 8.2:-83076356 MS.gene061362:CDS
ATCAGCTGCTAGTCACATTA+GGG 0.332459 8.2:-83076355 MS.gene061362:CDS
ATATCAAATGTGGCTGATTA+TGG 0.349357 8.2:-83075221 MS.gene061362:CDS
AGGAAATGGAAGGTGATAAG+AGG 0.375453 8.2:+83078750 None:intergenic
GCTGCTTCTGGCTTTGGTGC+TGG 0.385323 8.2:-83075119 MS.gene061362:CDS
GGAAGATGAAGGAGTGAAGT+TGG 0.386428 8.2:+83078773 None:intergenic
CTTTGGTGCTGGTCTTACTT+GGG 0.392366 8.2:-83075108 MS.gene061362:CDS
GCAAAGGAGGTTGGGAATCA+TGG 0.411841 8.2:+83078699 None:intergenic
CTCTTTCGAGATATATCGAT+TGG 0.434773 8.2:-83076210 MS.gene061362:CDS
ATACCTTGGCAAAGGAGGTT+GGG 0.472067 8.2:+83078691 None:intergenic
GAATATGAATACTTCTTTGG+AGG 0.473078 8.2:+83075590 None:intergenic
TAGTTGATACTTCTGATGAA+TGG 0.482232 8.2:-83077602 MS.gene061362:CDS
TGCTGCCTCTACTGATAAAG+TGG 0.490848 8.2:+83076802 None:intergenic
AATGCATCAGACTCAATTAA+GGG 0.492850 8.2:-83075626 MS.gene061362:CDS
GTGATAAGAGGGGAAGATGA+AGG 0.493811 8.2:+83078762 None:intergenic
GCTGTAATGTTATAAGCTGC+TGG 0.494699 8.2:+83076408 None:intergenic
TAGATGAACACACCAAGATT+AGG 0.495759 8.2:+83076735 None:intergenic
TGACTGGTTACTTCTCCATC+AGG 0.499458 8.2:-83075462 MS.gene061362:intron
AGTGCTGACTCAATTGACTT+TGG 0.500820 8.2:+83075515 None:intergenic
AGAAGTGGAAAGATTAAGGA+AGG 0.501824 8.2:-83075152 MS.gene061362:CDS
AAGATTAGGTCAACATCAGC+TGG 0.502133 8.2:+83076749 None:intergenic
CCAAAGAATTATTGATGTAG+TGG 0.502244 8.2:-83075276 MS.gene061362:CDS
TACCTGCATCCAGCATTGAC+TGG 0.503751 8.2:-83075478 MS.gene061362:CDS
TTTCAGATTTCAAAACAGCT+TGG 0.504851 8.2:-83076444 MS.gene061362:intron
AATTGAGTCAGCACTTCAAA+AGG 0.505835 8.2:-83075507 MS.gene061362:CDS
CATACCTTGGCAAAGGAGGT+TGG 0.506757 8.2:+83078690 None:intergenic
AATGCAGCATATAAAGAAGA+AGG 0.507598 8.2:-83075656 MS.gene061362:CDS
GAGAAGTAACCAGTCAATGC+TGG 0.509382 8.2:+83075469 None:intergenic
TTTGGTGCTGGTCTTACTTG+GGG 0.514017 8.2:-83075107 MS.gene061362:CDS
GGAAATGGAAGGTGATAAGA+GGG 0.514373 8.2:+83078751 None:intergenic
AGCTGATGTTGACCTAATCT+TGG 0.514969 8.2:-83076747 MS.gene061362:CDS
AACCAGTCAATGCTGGATGC+AGG 0.515256 8.2:+83075476 None:intergenic
TATTCATGCATACATATGAA+TGG 0.524043 8.2:-83075572 MS.gene061362:CDS
AAGTGCAGCTTCCATTCCAT+TGG 0.525636 8.2:-83075192 MS.gene061362:CDS
GGCTGCAAGCTGGTAGGATG+TGG 0.526765 8.2:-83077672 MS.gene061362:CDS
CTTTGCAGACTTGTTAGTCA+AGG 0.528713 8.2:-83077693 MS.gene061362:intron
AACTCGACGTTTACGAATCC+CGG 0.530634 8.2:+83077566 None:intergenic
AACATTACAGCTGCATGTAG+TGG 0.532984 8.2:-83076396 MS.gene061362:CDS
TGCTGGTGCTGTTCTAGTAC+AGG 0.539004 8.2:-83076152 MS.gene061362:intron
TCATTAGTAATCTCAAGAGT+TGG 0.547090 8.2:+83077639 None:intergenic
GAGTCAGCACTTCAAAAGGC+TGG 0.548884 8.2:-83075503 MS.gene061362:CDS
TTAGATGAATCAGTTAGAAG+TGG 0.549460 8.2:-83075167 MS.gene061362:CDS
ACTGATTCATCTAAAGCCAA+TGG 0.554412 8.2:+83075176 None:intergenic
TTCATCTAAAGCCAATGGAA+TGG 0.563272 8.2:+83075181 None:intergenic
CTTGACCACTTTATCAGTAG+AGG 0.564880 8.2:-83076807 MS.gene061362:CDS
AATGGATAAGTGTTCGCACC+GGG 0.577062 8.2:-83077584 MS.gene061362:CDS
GAATGGATAAGTGTTCGCAC+CGG 0.581811 8.2:-83077585 MS.gene061362:CDS
AAGACATACCTTGGCAAAGG+AGG 0.582045 8.2:+83078686 None:intergenic
ATGCAGCATATAAAGAAGAA+GGG 0.586575 8.2:-83075655 MS.gene061362:CDS
CAAAATACATGAACTTCTGT+CGG 0.589681 8.2:+83076186 None:intergenic
CTTTATCAGTAGAGGCAGCA+AGG 0.593587 8.2:-83076799 MS.gene061362:CDS
TGTTAGTCAAGGCTGCAAGC+TGG 0.594953 8.2:-83077682 MS.gene061362:CDS
TCTAAGACATACCTTGGCAA+AGG 0.596664 8.2:+83078683 None:intergenic
AGTCAAGGCTGCAAGCTGGT+AGG 0.597236 8.2:-83077678 MS.gene061362:CDS
TGCAGCATATAAAGAAGAAG+GGG 0.606045 8.2:-83075654 MS.gene061362:CDS
ATTCCCAACCTCCTTTGCCA+AGG 0.606866 8.2:-83078694 MS.gene061362:intron
AGCAAGGAAAGCTCTTGAGA+TGG 0.614431 8.2:-83076783 MS.gene061362:CDS
GATTTGAATAGTGATGGTGA+TGG 0.616422 8.2:-83075911 MS.gene061362:CDS
TCAGCTGCTAGTCACATTAG+GGG 0.630404 8.2:-83076354 MS.gene061362:intron
GAAAGCTCTTGAGATGGCAA+AGG 0.633878 8.2:-83076777 MS.gene061362:CDS
GAAATGGAAGGTGATAAGAG+GGG 0.692819 8.2:+83078752 None:intergenic
ATTGCAGGCGTGCAACTACG+AGG 0.723991 8.2:-83075954 MS.gene061362:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATTTACAACATTT+AGG + chr8.2:83077578-83077597 None:intergenic 10.0%
!! ATATAGTAATATATTTGATT+AGG - chr8.2:83078503-83078522 MS.gene061362:intron 10.0%
!! TAATCAAATATATTACTATA+TGG + chr8.2:83078504-83078523 None:intergenic 10.0%
!! TATAGTAATATATTTGATTA+GGG - chr8.2:83078504-83078523 MS.gene061362:intron 10.0%
!!! CTTTTTACTTATATAAAAAT+TGG + chr8.2:83077238-83077257 None:intergenic 10.0%
!!! TTAATCATAAAAAAAAGTTT+TGG + chr8.2:83078464-83078483 None:intergenic 10.0%
!! AAATTAAAATCAAATCATGA+TGG - chr8.2:83076044-83076063 MS.gene061362:intron 15.0%
!!! AATATTAATAGGAAGTATAA+TGG - chr8.2:83075642-83075661 MS.gene061362:CDS 15.0%
!!! AATTTAGGGAAATTTATTTT+TGG + chr8.2:83078434-83078453 None:intergenic 15.0%
!!! ATTATTTGTTATAAGATGTA+AGG + chr8.2:83075388-83075407 None:intergenic 15.0%
!! ATATATTTGATTAGGGAAAA+AGG - chr8.2:83078511-83078530 MS.gene061362:intron 20.0%
!! CATAAACATCATAAATAGAA+TGG - chr8.2:83076351-83076370 MS.gene061362:intron 20.0%
!! CTATTCATTATAAACAAATG+TGG - chr8.2:83075771-83075790 MS.gene061362:intron 20.0%
!! GAAGAAAAAAAAATGTAGTT+TGG + chr8.2:83076642-83076661 None:intergenic 20.0%
!! TAAATACTGAATTATTAGCA+TGG + chr8.2:83078546-83078565 None:intergenic 20.0%
!! TATATATCCAATGTCTTATA+AGG - chr8.2:83076903-83076922 MS.gene061362:intron 20.0%
!! TTTCAAAATGTTCTTGTAAT+CGG - chr8.2:83077623-83077642 MS.gene061362:CDS 20.0%
!!! AAATTGTTTTGAGATATTGT+TGG - chr8.2:83076454-83076473 MS.gene061362:intron 20.0%
!!! AAGTAAAAAGTACATATATC+TGG - chr8.2:83077248-83077267 MS.gene061362:intron 20.0%
!!! AGTTACTTTTTGTTGAATTA+AGG - chr8.2:83077541-83077560 MS.gene061362:intron 20.0%
!!! ATCAGTTGATAATATAAGTT+TGG + chr8.2:83076698-83076717 None:intergenic 20.0%
!!! ATTTACTTGTTGATAAATGT+AGG - chr8.2:83078561-83078580 MS.gene061362:intron 20.0%
!!! CTATAACAAACTCTAAAATA+TGG + chr8.2:83076141-83076160 None:intergenic 20.0%
!!! GGTTTTTTATATAAGCAAAA+AGG + chr8.2:83077283-83077302 None:intergenic 20.0%
!!! GTTTTCTCTAAATATAGTTT+TGG + chr8.2:83076620-83076639 None:intergenic 20.0%
!!! TAATAGTTCAGTTTAGTTTT+CGG - chr8.2:83076783-83076802 MS.gene061362:CDS 20.0%
!!! TTCATTTTATATCATACACT+AGG - chr8.2:83075233-83075252 MS.gene061362:CDS 20.0%
!!! TTTTGCTTATATAAAAAACC+AGG - chr8.2:83077283-83077302 MS.gene061362:intron 20.0%
!!! TTTTTTCATTTTATGAATGC+AGG - chr8.2:83077593-83077612 MS.gene061362:CDS 20.0%
! AAATTGAACCAAATCGTTAA+TGG - chr8.2:83076583-83076602 MS.gene061362:intron 25.0%
! AATGTAATCACATATATCAC+CGG + chr8.2:83078035-83078054 None:intergenic 25.0%
! AGAAAAAGTGATATCAAATG+TGG - chr8.2:83078633-83078652 MS.gene061362:intron 25.0%
! ATAACTAAACTATGGTTAGT+TGG + chr8.2:83075723-83075742 None:intergenic 25.0%
! ATCCTCATTATTACACTAAT+AGG + chr8.2:83076511-83076530 None:intergenic 25.0%
! CAATTTCTTCTACATACTTA+TGG + chr8.2:83076440-83076459 None:intergenic 25.0%
! CATGAATATGAATACTTCTT+TGG + chr8.2:83078280-83078299 None:intergenic 25.0%
! CATGTAAATAAAATTGTGGT+TGG - chr8.2:83075800-83075819 MS.gene061362:intron 25.0%
! GATGCATGTAAATAAAATTG+TGG - chr8.2:83075796-83075815 MS.gene061362:intron 25.0%
! GTTATATATGTTTACATTGC+AGG - chr8.2:83077895-83077914 MS.gene061362:intron 25.0%
! GTTTAGTTATCAACTAACTA+TGG - chr8.2:83075733-83075752 MS.gene061362:intron 25.0%
! TAAAATATGGTTCCAAGTTA+TGG + chr8.2:83076128-83076147 None:intergenic 25.0%
! TAATGGTGAGAGTTATTTAT+AGG - chr8.2:83075659-83075678 MS.gene061362:CDS 25.0%
! TATGATGAAAACCATAAACA+TGG + chr8.2:83077786-83077805 None:intergenic 25.0%
! TATTCATGCATACATATGAA+TGG - chr8.2:83078292-83078311 MS.gene061362:intron 25.0%
! TCTTACTCACATTTATTACT+AGG + chr8.2:83076822-83076841 None:intergenic 25.0%
!! ACTCACATTTTCATCTAATA+TGG + chr8.2:83076849-83076868 None:intergenic 25.0%
!! AGAAGTTCATGTATTTTGTT+TGG - chr8.2:83077683-83077702 MS.gene061362:CDS 25.0%
!! ATTCTGTTTTCAATTGTTGA+TGG - chr8.2:83076484-83076503 MS.gene061362:intron 25.0%
!! CTCACATTTTCATCTAATAT+GGG + chr8.2:83076848-83076867 None:intergenic 25.0%
!! GGTTTTCATCATAGTAAATA+GGG - chr8.2:83077793-83077812 MS.gene061362:intron 25.0%
!! TCTACTTCAAATGATCTTTT+TGG - chr8.2:83077148-83077167 MS.gene061362:intron 25.0%
!! TGGTTTTCATCATAGTAAAT+AGG - chr8.2:83077792-83077811 MS.gene061362:intron 25.0%
!! TTCTGTTTTCAATTGTTGAT+GGG - chr8.2:83076485-83076504 MS.gene061362:intron 25.0%
!! TTGATAACTGTTACAAATCA+TGG - chr8.2:83075513-83075532 MS.gene061362:CDS 25.0%
!! TTGATTTTGCTTGATGTTTA+TGG - chr8.2:83077018-83077037 MS.gene061362:intron 25.0%
!!! AATAGTTCAGTTTAGTTTTC+GGG - chr8.2:83076784-83076803 MS.gene061362:CDS 25.0%
!!! ACATTTGATATCACTTTTTC+TGG + chr8.2:83078634-83078653 None:intergenic 25.0%
!!! AGTTTTGATTTGAATAGTGA+TGG - chr8.2:83077947-83077966 MS.gene061362:intron 25.0%
!!! AGTTTTGGTCACTTAAATTT+AGG + chr8.2:83078449-83078468 None:intergenic 25.0%
!!! CACTAGGTTTTAATAAGTTA+TGG - chr8.2:83075249-83075268 MS.gene061362:CDS 25.0%
!!! CTAAATATAGTTTTGGTTCA+GGG + chr8.2:83076613-83076632 None:intergenic 25.0%
!!! CTATATGGTATATCACTTTT+AGG + chr8.2:83078489-83078508 None:intergenic 25.0%
!!! GTTAGTTGATAACTAAACTA+TGG + chr8.2:83075731-83075750 None:intergenic 25.0%
!!! GTTTTGGTCACTTAAATTTA+GGG + chr8.2:83078448-83078467 None:intergenic 25.0%
!!! TAGTAAATAGGGTTTTAACA+TGG - chr8.2:83077804-83077823 MS.gene061362:intron 25.0%
!!! TCTAAATATAGTTTTGGTTC+AGG + chr8.2:83076614-83076633 None:intergenic 25.0%
!!! TGAATTGAATTTGGCTTTTA+TGG - chr8.2:83076381-83076400 MS.gene061362:CDS 25.0%
AAATCAAGTCAAACCTTGTT+AGG + chr8.2:83077005-83077024 None:intergenic 30.0%
AATCAAGTCAAACCTTGTTA+GGG + chr8.2:83077004-83077023 None:intergenic 30.0%
AATGAGGATTGTTCATGATT+CGG - chr8.2:83076522-83076541 MS.gene061362:intron 30.0%
AATGCAGCATATAAAGAAGA+AGG - chr8.2:83078208-83078227 MS.gene061362:intron 30.0%
AATGCATCAGACTCAATTAA+GGG - chr8.2:83078238-83078257 MS.gene061362:intron 30.0%
ACTTTACTATGAGTCTCTAT+GGG + chr8.2:83075606-83075625 None:intergenic 30.0%
AGTTAGAAGTGGAAAGATTA+AGG - chr8.2:83078708-83078727 MS.gene061362:CDS 30.0%
ATATCAAATGTGGCTGATTA+TGG - chr8.2:83078643-83078662 MS.gene061362:intron 30.0%
ATGCAGCATATAAAGAAGAA+GGG - chr8.2:83078209-83078228 MS.gene061362:intron 30.0%
ATTTAACATAATAGTCGCCT+TGG + chr8.2:83075898-83075917 None:intergenic 30.0%
ATTTGATTAGGGAAAAAGGT+TGG - chr8.2:83078515-83078534 MS.gene061362:intron 30.0%
CAAAATACATGAACTTCTGT+CGG + chr8.2:83077681-83077700 None:intergenic 30.0%
CCAAAGAATTATTGATGTAG+TGG - chr8.2:83078588-83078607 MS.gene061362:intron 30.0%
CCACTACATCAATAATTCTT+TGG + chr8.2:83078591-83078610 None:intergenic 30.0%
CCTCAAAAACCTTAATATTG+AGG - chr8.2:83075839-83075858 MS.gene061362:intron 30.0%
CTGAAATGATTCTATGTGAA+CGG - chr8.2:83076665-83076684 MS.gene061362:intron 30.0%
GAATATGAATACTTCTTTGG+AGG + chr8.2:83078277-83078296 None:intergenic 30.0%
GTGTAATAAAAAAACTGCAC+AGG + chr8.2:83075968-83075987 None:intergenic 30.0%
TAATAAAAAAACTGCACAGG+AGG + chr8.2:83075965-83075984 None:intergenic 30.0%
TAATGCATCAGACTCAATTA+AGG - chr8.2:83078237-83078256 MS.gene061362:intron 30.0%
TCATTAGTAATCTCAAGAGT+TGG + chr8.2:83076228-83076247 None:intergenic 30.0%
TCTACATACTTATGGAAACA+TGG + chr8.2:83076432-83076451 None:intergenic 30.0%
TGTTATAAGATGTAAGGTGT+GGG + chr8.2:83075382-83075401 None:intergenic 30.0%
TTAGATGAATCAGTTAGAAG+TGG - chr8.2:83078697-83078716 MS.gene061362:CDS 30.0%
TTGTTATAAGATGTAAGGTG+TGG + chr8.2:83075383-83075402 None:intergenic 30.0%
TTTCAGATTTCAAAACAGCT+TGG - chr8.2:83077420-83077439 MS.gene061362:intron 30.0%
! ACTAAAGCAAACAAGTTTTG+AGG + chr8.2:83075137-83075156 None:intergenic 30.0%
! ATATAAGCAAAAAGGTGCAT+TGG + chr8.2:83077275-83077294 None:intergenic 30.0%
! CCTCAATATTAAGGTTTTTG+AGG + chr8.2:83075842-83075861 None:intergenic 30.0%
! TAAGGTTTCAGGTAAAAATG+TGG - chr8.2:83076921-83076940 MS.gene061362:intron 30.0%
! TAGTTGATACTTCTGATGAA+TGG - chr8.2:83076262-83076281 MS.gene061362:intron 30.0%
!! AGAAATTCTAAGACATACCT+TGG + chr8.2:83075190-83075209 None:intergenic 30.0%
!!! TTGATATCACTTTTTCTGGA+GGG + chr8.2:83078630-83078649 None:intergenic 30.0%
!!! TTTGATATCACTTTTTCTGG+AGG + chr8.2:83078631-83078650 None:intergenic 30.0%
AATTGAGTCAGCACTTCAAA+AGG - chr8.2:83078357-83078376 MS.gene061362:intron 35.0%
ACACCAAAGAATCATAACTC+TGG + chr8.2:83076966-83076985 None:intergenic 35.0%
ACCAAACCATTGTAACAGTT+CGG + chr8.2:83076562-83076581 None:intergenic 35.0%
ACCAAAGAATCATAACTCTG+GGG + chr8.2:83076964-83076983 None:intergenic 35.0%
ACCATAGTTTCACTTCATGT+AGG - chr8.2:83078179-83078198 MS.gene061362:intron 35.0%
AGAAAACCGAACTGTTACAA+TGG - chr8.2:83076553-83076572 MS.gene061362:intron 35.0%
AGAAGTGGAAAGATTAAGGA+AGG - chr8.2:83078712-83078731 MS.gene061362:CDS 35.0%
ATAGAGAGAAAACTCATTCG+AGG + chr8.2:83075419-83075438 None:intergenic 35.0%
ATCATTATGACCTTTATCCC+TGG + chr8.2:83075543-83075562 None:intergenic 35.0%
CAAATGCGACCTCAATATTA+AGG + chr8.2:83075851-83075870 None:intergenic 35.0%
CACCAAAGAATCATAACTCT+GGG + chr8.2:83076965-83076984 None:intergenic 35.0%
CACTTTACTATGAGTCTCTA+TGG + chr8.2:83075607-83075626 None:intergenic 35.0%
CCAATGTCTTATAAGGTTTC+AGG - chr8.2:83076910-83076929 MS.gene061362:intron 35.0%
CCTGAAACCTTATAAGACAT+TGG + chr8.2:83076913-83076932 None:intergenic 35.0%
CTATAACCAATACTAACCTG+AGG + chr8.2:83077181-83077200 None:intergenic 35.0%
CTCTTTCGAGATATATCGAT+TGG - chr8.2:83077654-83077673 MS.gene061362:CDS 35.0%
GAGATGAAAATTCGTCTCAT+AGG + chr8.2:83075455-83075474 None:intergenic 35.0%
GGCCTATTAGTGTAATAATG+AGG - chr8.2:83076506-83076525 MS.gene061362:intron 35.0%
GGCTAACTATACCATGTTTA+TGG - chr8.2:83077772-83077791 MS.gene061362:intron 35.0%
GGTTACAGCTGAATTGAATT+TGG - chr8.2:83076372-83076391 MS.gene061362:CDS 35.0%
GTAAGAGTCCAAATTCAACA+AGG + chr8.2:83076097-83076116 None:intergenic 35.0%
TAGAAATGTCGATACTGCAA+AGG + chr8.2:83077999-83078018 None:intergenic 35.0%
TAGATGAACACACCAAGATT+AGG + chr8.2:83077132-83077151 None:intergenic 35.0%
TCATTATGACCTTTATCCCT+GGG + chr8.2:83075542-83075561 None:intergenic 35.0%
TGCAGCATATAAAGAAGAAG+GGG - chr8.2:83078210-83078229 MS.gene061362:intron 35.0%
TTACAAATCATGGAATCCCA+GGG - chr8.2:83075523-83075542 MS.gene061362:CDS 35.0%
TTGATCAGTTCGTGAACTAT+CGG - chr8.2:83076724-83076743 MS.gene061362:CDS 35.0%
! AACAGTTCGGTTTTCTTTCT+TGG + chr8.2:83076549-83076568 None:intergenic 35.0%
! ACTGATTCATCTAAAGCCAA+TGG + chr8.2:83078691-83078710 None:intergenic 35.0%
! CTAAACTATGGTTAGTTGGT+AGG + chr8.2:83075719-83075738 None:intergenic 35.0%
! GATTTGAATAGTGATGGTGA+TGG - chr8.2:83077953-83077972 MS.gene061362:intron 35.0%
! GTATCGACATTTCTAATCGA+AGG - chr8.2:83078004-83078023 MS.gene061362:intron 35.0%
! TTCATCTAAAGCCAATGGAA+TGG + chr8.2:83078686-83078705 None:intergenic 35.0%
! TTGACGACAATTTAAAGCCA+AGG - chr8.2:83075878-83075897 MS.gene061362:intron 35.0%
!! ACTTTTGTTTGTCAACACTG+AGG + chr8.2:83077752-83077771 None:intergenic 35.0%
!! AGTGCATAAGAGTATTCATG+TGG - chr8.2:83075574-83075593 MS.gene061362:CDS 35.0%
!! CTCAGGTTAGTATTGGTTAT+AGG - chr8.2:83077179-83077198 MS.gene061362:intron 35.0%
!! GCATGTAGTGGATTTATCTT+TGG - chr8.2:83077480-83077499 MS.gene061362:intron 35.0%
!! GTGCATAAGAGTATTCATGT+GGG - chr8.2:83075575-83075594 MS.gene061362:CDS 35.0%
!! GTGTGGGTTGATTACATATT+AGG + chr8.2:83075366-83075385 None:intergenic 35.0%
!! TCAAATGATCTTTTTGGCAC+TGG - chr8.2:83077154-83077173 MS.gene061362:intron 35.0%
!! TCAGTGTTGACAAACAAAAG+TGG - chr8.2:83077751-83077770 MS.gene061362:intron 35.0%
!!! ACAAGTTTTGAGGAAATGGA+AGG + chr8.2:83075127-83075146 None:intergenic 35.0%
!!! GCAAACAAGTTTTGAGGAAA+TGG + chr8.2:83075131-83075150 None:intergenic 35.0%
!!! GGATCAGCTATTTTTCAATG+GGG - chr8.2:83078778-83078797 MS.gene061362:CDS 35.0%
!!! GGGATCAGCTATTTTTCAAT+GGG - chr8.2:83078777-83078796 MS.gene061362:CDS 35.0%
!!! TATTTTTGGTCCTTACCTGA+TGG + chr8.2:83078420-83078439 None:intergenic 35.0%
!!! TGAATTTGGCTTTTATGGAG+TGG - chr8.2:83076386-83076405 MS.gene061362:CDS 35.0%
AAAAAAACTGCACAGGAGGA+AGG + chr8.2:83075961-83075980 None:intergenic 40.0%
AACATTACAGCTGCATGTAG+TGG - chr8.2:83077468-83077487 MS.gene061362:intron 40.0%
AAGATTAGGTCAACATCAGC+TGG + chr8.2:83077118-83077137 None:intergenic 40.0%
ACCGAACTGTTACAATGGTT+TGG - chr8.2:83076558-83076577 MS.gene061362:intron 40.0%
AGCTGATGTTGACCTAATCT+TGG - chr8.2:83077117-83077136 MS.gene061362:intron 40.0%
AGGAAATGGAAGGTGATAAG+AGG + chr8.2:83075117-83075136 None:intergenic 40.0%
AGTTTCTCTCTTCCCTAACA+AGG - chr8.2:83076989-83077008 MS.gene061362:intron 40.0%
AGTTTCTGCAATGTACTTCC+TGG + chr8.2:83077304-83077323 None:intergenic 40.0%
ATCAGCTGCTAGTCACATTA+GGG - chr8.2:83077509-83077528 MS.gene061362:intron 40.0%
ATGTCGATACTGCAAAGGTA+AGG + chr8.2:83077994-83078013 None:intergenic 40.0%
CAATCACAATCGTCATCACT+AGG - chr8.2:83075329-83075348 MS.gene061362:intron 40.0%
CTTGACCACTTTATCAGTAG+AGG - chr8.2:83077057-83077076 MS.gene061362:intron 40.0%
GAAATGGAAGGTGATAAGAG+GGG + chr8.2:83075115-83075134 None:intergenic 40.0%
GCCTACATGAAGTGAAACTA+TGG + chr8.2:83078183-83078202 None:intergenic 40.0%
GCTGTAATGTTATAAGCTGC+TGG + chr8.2:83077459-83077478 None:intergenic 40.0%
GGAAATGGAAGGTGATAAGA+GGG + chr8.2:83075116-83075135 None:intergenic 40.0%
GTGAACTATCGGTCATAGTT+CGG - chr8.2:83076735-83076754 MS.gene061362:CDS 40.0%
GTTACAAATCATGGAATCCC+AGG - chr8.2:83075522-83075541 MS.gene061362:CDS 40.0%
TATCAGCTGCTAGTCACATT+AGG - chr8.2:83077508-83077527 MS.gene061362:intron 40.0%
TCCAAATTCAACAAGGATGC+AGG + chr8.2:83076090-83076109 None:intergenic 40.0%
TCCTGCATCCTTGTTGAATT+TGG - chr8.2:83076086-83076105 MS.gene061362:intron 40.0%
TGAACCAAATCGTTAATGGC+CGG - chr8.2:83076587-83076606 MS.gene061362:intron 40.0%
TGCTTGATGTTTATGGTTGC+AGG - chr8.2:83077025-83077044 MS.gene061362:intron 40.0%
TTACTCTCAGTGCCATAACT+TGG - chr8.2:83076113-83076132 MS.gene061362:intron 40.0%
TTGATGTTTATGGTTGCAGG+TGG - chr8.2:83077028-83077047 MS.gene061362:intron 40.0%
TTGTTTGTCAACACTGAGGA+AGG + chr8.2:83077748-83077767 None:intergenic 40.0%
! GGACAAATTATTGCTGCTTC+TGG - chr8.2:83078733-83078752 MS.gene061362:CDS 40.0%
! TCTAAGACATACCTTGGCAA+AGG + chr8.2:83075184-83075203 None:intergenic 40.0%
!! AGTGCTGACTCAATTGACTT+TGG + chr8.2:83078352-83078371 None:intergenic 40.0%
!! ATTATTGCTGCTTCTGGCTT+TGG - chr8.2:83078739-83078758 MS.gene061362:CDS 40.0%
!! ATTTTGTTTGGAGATGCTGC+TGG - chr8.2:83077695-83077714 MS.gene061362:intron 40.0%
!! CAGCACTGACACATATACAT+TGG + chr8.2:83078112-83078131 None:intergenic 40.0%
!! CTATGGTTAGTTGGTAGGTT+AGG + chr8.2:83075714-83075733 None:intergenic 40.0%
!! CTTTGCAGACTTGTTAGTCA+AGG - chr8.2:83076171-83076190 MS.gene061362:CDS 40.0%
!!! ATATAGTTTTGGTTCAGGGC+CGG + chr8.2:83076609-83076628 None:intergenic 40.0%
!!! GGGGATCAGCTATTTTTCAA+TGG - chr8.2:83078776-83078795 MS.gene061362:CDS 40.0%
AACTCGACGTTTACGAATCC+CGG + chr8.2:83076301-83076320 None:intergenic 45.0%
AAGACATACCTTGGCAAAGG+AGG + chr8.2:83075181-83075200 None:intergenic 45.0%
AAGTGCAGCTTCCATTCCAT+TGG - chr8.2:83078672-83078691 MS.gene061362:intron 45.0%
AATGGATAAGTGTTCGCACC+GGG - chr8.2:83076280-83076299 MS.gene061362:intron 45.0%
ACTGGTCCTCAGGTTAGTAT+TGG - chr8.2:83077172-83077191 MS.gene061362:intron 45.0%
AGCAAGGAAAGCTCTTGAGA+TGG - chr8.2:83077081-83077100 MS.gene061362:intron 45.0%
ATACCTTGGCAAAGGAGGTT+GGG + chr8.2:83075176-83075195 None:intergenic 45.0%
CGTAAACGTCGAGTTCTTTC+AGG - chr8.2:83076306-83076325 MS.gene061362:intron 45.0%
CTTTATCAGTAGAGGCAGCA+AGG - chr8.2:83077065-83077084 MS.gene061362:intron 45.0%
GAAAGCTCTTGAGATGGCAA+AGG - chr8.2:83077087-83077106 MS.gene061362:intron 45.0%
GAATGGATAAGTGTTCGCAC+CGG - chr8.2:83076279-83076298 MS.gene061362:intron 45.0%
GAGAAGTAACCAGTCAATGC+TGG + chr8.2:83078398-83078417 None:intergenic 45.0%
GCCCCAGAGTTATGATTCTT+TGG - chr8.2:83076960-83076979 MS.gene061362:intron 45.0%
GGAAGATGAAGGAGTGAAGT+TGG + chr8.2:83075094-83075113 None:intergenic 45.0%
GGTTACTTCTCCATCAGGTA+AGG - chr8.2:83078407-83078426 MS.gene061362:intron 45.0%
GTGATAAGAGGGGAAGATGA+AGG + chr8.2:83075105-83075124 None:intergenic 45.0%
TCAGCTGCTAGTCACATTAG+GGG - chr8.2:83077510-83077529 MS.gene061362:intron 45.0%
TCATGGAATCCCAGGGATAA+AGG - chr8.2:83075530-83075549 MS.gene061362:CDS 45.0%
TGCTGCCTCTACTGATAAAG+TGG + chr8.2:83077065-83077084 None:intergenic 45.0%
! TGACTGGTTACTTCTCCATC+AGG - chr8.2:83078402-83078421 MS.gene061362:intron 45.0%
! TTTCTAATCGAAGGCGTGTC+CGG - chr8.2:83078013-83078032 MS.gene061362:intron 45.0%
!! AATCATAACTCTGGGGCTAC+GGG + chr8.2:83076957-83076976 None:intergenic 45.0%
!! AGTTGGTAGGTTAGGTGGTT+AGG + chr8.2:83075706-83075725 None:intergenic 45.0%
!! CTCTTTCGTGCGATTTGGTT+CGG - chr8.2:83076758-83076777 MS.gene061362:CDS 45.0%
!! CTTTGGTGCTGGTCTTACTT+GGG - chr8.2:83078756-83078775 MS.gene061362:CDS 45.0%
!! GAATCATAACTCTGGGGCTA+CGG + chr8.2:83076958-83076977 None:intergenic 45.0%
!! TGGTTAGTTGGTAGGTTAGG+TGG + chr8.2:83075711-83075730 None:intergenic 45.0%
!! TTTGGTGCTGGTCTTACTTG+GGG - chr8.2:83078757-83078776 MS.gene061362:CDS 45.0%
!! TATATTGATAAAATATTAAT+AGG - chr8.2:83075631-83075650 MS.gene061362:CDS 5.0%
AACCAGTCAATGCTGGATGC+AGG + chr8.2:83078391-83078410 None:intergenic 50.0%
ATTCCCAACCTCCTTTGCCA+AGG - chr8.2:83075170-83075189 MS.gene061362:CDS 50.0%
CATACCTTGGCAAAGGAGGT+TGG + chr8.2:83075177-83075196 None:intergenic 50.0%
GAGTCAGCACTTCAAAAGGC+TGG - chr8.2:83078361-83078380 MS.gene061362:intron 50.0%
GCAAAGGAGGTTGGGAATCA+TGG + chr8.2:83075168-83075187 None:intergenic 50.0%
TGTTAGTCAAGGCTGCAAGC+TGG - chr8.2:83076182-83076201 MS.gene061362:CDS 50.0%
TTCGGCTCTTTCGTGCGATT+TGG - chr8.2:83076753-83076772 MS.gene061362:CDS 50.0%
!! GCTTTGGTGCTGGTCTTACT+TGG - chr8.2:83078755-83078774 MS.gene061362:CDS 50.0%
!! TACCTGCATCCAGCATTGAC+TGG - chr8.2:83078386-83078405 MS.gene061362:intron 50.0%
!! TGCTGGTGCTGTTCTAGTAC+AGG - chr8.2:83077712-83077731 MS.gene061362:intron 50.0%
!!! TCTTTTTGGCACTGGTCCTC+AGG - chr8.2:83077162-83077181 MS.gene061362:intron 50.0%
AACTGCATCTTGTTGCCCGC+TGG - chr8.2:83075935-83075954 MS.gene061362:CDS 55.0%
AGGGCCGGCCATTAACGATT+TGG + chr8.2:83076594-83076613 None:intergenic 55.0%
AGTCAAGGCTGCAAGCTGGT+AGG - chr8.2:83076186-83076205 MS.gene061362:CDS 55.0%
ATTGCAGGCGTGCAACTACG+AGG - chr8.2:83077910-83077929 MS.gene061362:intron 55.0%
GGCTGCAAGCTGGTAGGATG+TGG - chr8.2:83076192-83076211 MS.gene061362:CDS 60.0%
!! GCTGCTTCTGGCTTTGGTGC+TGG - chr8.2:83078745-83078764 MS.gene061362:CDS 60.0%
CTGCACAGGAGGAAGGCCAG+CGG + chr8.2:83075954-83075973 None:intergenic 65.0%
TGCACAGGAGGAAGGCCAGC+GGG + chr8.2:83075953-83075972 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 83075082 83078804 83075082 ID=MS.gene061362
chr8.2 mRNA 83075082 83078804 83075082 ID=MS.gene061362.t1;Parent=MS.gene061362
chr8.2 exon 83078695 83078804 83078695 ID=MS.gene061362.t1.exon1;Parent=MS.gene061362.t1
chr8.2 CDS 83078695 83078804 83078695 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83077559 83077707 83077559 ID=MS.gene061362.t1.exon2;Parent=MS.gene061362.t1
chr8.2 CDS 83077559 83077707 83077559 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83076703 83076839 83076703 ID=MS.gene061362.t1.exon3;Parent=MS.gene061362.t1
chr8.2 CDS 83076703 83076839 83076703 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83076355 83076460 83076355 ID=MS.gene061362.t1.exon4;Parent=MS.gene061362.t1
chr8.2 CDS 83076355 83076460 83076355 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83076153 83076271 83076153 ID=MS.gene061362.t1.exon5;Parent=MS.gene061362.t1
chr8.2 CDS 83076153 83076271 83076153 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83075905 83075969 83075905 ID=MS.gene061362.t1.exon6;Parent=MS.gene061362.t1
chr8.2 CDS 83075905 83075969 83075905 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83075463 83075685 83075463 ID=MS.gene061362.t1.exon7;Parent=MS.gene061362.t1
chr8.2 CDS 83075463 83075685 83075463 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
chr8.2 exon 83075082 83075303 83075082 ID=MS.gene061362.t1.exon8;Parent=MS.gene061362.t1
chr8.2 CDS 83075082 83075303 83075082 ID=cds.MS.gene061362.t1;Parent=MS.gene061362.t1
Gene Sequence

>MS.gene061362

ATGTATCTACCAACTTCACTCCTTCATCTTCCCCTCTTATCACCTTCCATTTCCTCAAAACTTGTTTGCTTTAGTGCTCACAACCATGATTCCCAACCTCCTTTGCCAAGGTATGTCTTAGAATTTCTCTATTGTCTCACATCATCACTCTTTCATTTTATATCATACACTAGGTTTTAATAAGTTATGGTTGCACTCACGTAGTAATTCTTGATATTATTTCATGATCAAATGTTGACTCAAATGTCAATCACAATCGTCATCACTAGGCATAAAAGTTGCCTAATATGTAATCAACCCACACCTTACATCTTATAACAAATAATCAACATGACCTCGAATGAGTTTTCTCTCTATCAAGCTTATTTTACCTATGAGACGAATTTTCATCTCTTTGATCTTGTAATTTGTAAAAGTTGTCATTATTATTGTTGATAACTGTTACAAATCATGGAATCCCAGGGATAAAGGTCATAATGATCAACAAGAAAGAGTGCATAAGAGTATTCATGTGGGAGATACCCATAGAGACTCATAGTAAAGTGAAAATATATTGATAAAATATTAATAGGAAGTATAATGGTGAGAGTTATTTATAGGAGTGAGTTAGTCTAACTAACTCCTAACCACCTAACCTACCAACTAACCATAGTTTAGTTATCAACTAACTATGGTTTATTCACTATACTCTATTCATTATAAACAAATGTGGTTGATGCATGTAAATAAAATTGTGGTTGGTATACAATTTTGAAGACCTCAAAAACCTTAATATTGAGGTCGCATTTGCATTCATTTGACGACAATTTAAAGCCAAGGCGACTATTATGTTAAATTTTGATGATCGCAATGCAACTGCATCTTGTTGCCCGCTGGCCTTCCTCCTGTGCAGTTTTTTTATTACACAAGCATATTGTGACAACTTCATATTATCATATTAGACAAATATTTATGATTAAAAAAAATTAAAATCAAATCATGATGGTTATAATTTGTGTAATAGTTCCTGCATCCTTGTTGAATTTGGACTCTTACTCTCAGTGCCATAACTTGGAACCATATTTTAGAGTTTGTTATAGTAATTCAAATCTTTGCAGACTTGTTAGTCAAGGCTGCAAGCTGGTAGGATGTGGTTCAGCTGTGCCAACTCTTGAGATTACTAATGACGAGCTTGCAAAAATAGTTGATACTTCTGATGAATGGATAAGTGTTCGCACCGGGATTCGTAAACGTCGAGTTCTTTCAGGTTAGTTTATTGCTAATTTGCTACATAAACATCATAAATAGAATGGTTACAGCTGAATTGAATTTGGCTTTTATGGAGTGGTGATAGTTTAGAAATCTCATCCATGTTTCCATAAGTATGTAGAAGAAATTGTTTTGAGATATTGTTGGAAGTTGTATTCTGTTTTCAATTGTTGATGGGCCTATTAGTGTAATAATGAGGATTGTTCATGATTCGGTCCAAGAAAGAAAACCGAACTGTTACAATGGTTTGGTAAAATTGAACCAAATCGTTAATGGCCGGCCCTGAACCAAAACTATATTTAGAGAAAACCAAACTACATTTTTTTTTCTTCGAACTGAAATGATTCTATGTGAACGGAAATGTACCAAACTTATATTATCAACTGATAATTAGTTGATCAGTTCGTGAACTATCGGTCATAGTTCGGCTCTTTCGTGCGATTTGGTTCGGTTTAATAGTTCAGTTTAGTTTTCGGGTTTTTTAACAATCCTAGTAATAAATGTGAGTAAGAAGTCCCATATTAGATGAAAATGTGAGTGTTGAATATTGAATAATATAGAGATGAGACGAACTATATATCCAATGTCTTATAAGGTTTCAGGTAAAAATGTGGTAAATAGTTGCCCGTAGCCCCAGAGTTATGATTCTTTGGTGTTTTAGTTTCTCTCTTCCCTAACAAGGTTTGACTTGATTTTGCTTGATGTTTATGGTTGCAGGTGGAGAAAACTTGACCACTTTATCAGTAGAGGCAGCAAGGAAAGCTCTTGAGATGGCAAAGGTTGATCCAGCTGATGTTGACCTAATCTTGGTGTGTTCATCTACTTCAAATGATCTTTTTGGCACTGGTCCTCAGGTTAGTATTGGTTATAGGTGTATAATAACATTTTATTTAGATTATATCACTCCAATTTTTATATAAGTAAAAAGTACATATATCTGGTCCAATGCACCTTTTTGCTTATATAAAAAACCAGGAAGTACATTGCAGAAACTGTTGATTTATATGTTAATGTTTCTTTCTTTGTCATTAATGCATCTCTATAGTTCACATGCACTTTTGTATGCATGACATGTAATTTTCATTATGAATTTCAGATTTCAAAACAGCTTGGCTGCAAAAAAAATCCAGCAGCTTATAACATTACAGCTGCATGTAGTGGATTTATCTTTGGTTTAATATCAGCTGCTAGTCACATTAGGGGTATGAATCAGTTACTTTTTGTTGAATTAAGGTTATAATATCTCCTAAATGTTGTAAATAATTTTTTCATTTTATGAATGCAGGAGCAGCATTTCAAAATGTTCTTGTAATCGGAACTGATGCTCTTTCGAGATATATCGATTGGACCGACAGAAGTTCATGTATTTTGTTTGGAGATGCTGCTGGTGCTGTTCTAGTACAGGTAACTCTTTACCTTCCTCAGTGTTGACAAACAAAAGTGGCTAACTATACCATGTTTATGGTTTTCATCATAGTAAATAGGGTTTTAACATGGTGAAAAAAATTTGATTTATTTTCATTGAGATTTAATGATTTTGTATAAATTTGTAGCATTGTTCTGATGTTATATATGTTTACATTGCAGGCGTGCAACTACGAGGAAGATTGTTTATTTAGTTTTGATTTGAATAGTGATGGTGATGGATATATGTATGTACTCCTTACCTTTGCAGTATCGACATTTCTAATCGAAGGCGTGTCCGGTGATATATGTGATTACATTAAATTAGTTAATTTTTTTAATTTTTTTATTAGTGTCAACGTGTAAGTGTTGCGTCCAATGTATATGTGTCAGTGCTGCGTAGTTTCTTACACAGACATGCACATTGTTACGTGTTATGTGATAAACCATAGTTTCACTTCATGTAGGCATCTGAATGCAGCATATAAAGAAGAAGGGGCTAATAATGCATCAGACTCAATTAAGGGTGAGTTGAACTTTCCTCCAAAGAAGTATTCATATTCATGCATACATATGAATGGCAAAGTAGTGTTTAAATTTGCTATACAGAGTGTGCCAAAGTCAATTGAGTCAGCACTTCAAAAGGCTGGTCTACCTGCATCCAGCATTGACTGGTTACTTCTCCATCAGGTAAGGACCAAAAATAAATTTCCCTAAATTTAAGTGACCAAAACTTTTTTTTATGATTAAAACCTAAAAGTGATATACCATATAGTAATATATTTGATTAGGGAAAAAGGTTGGTTACACCATGCTAATAATTCAGTATTTACTTGTTGATAAATGTAGGCAAACCAAAGAATTATTGATGTAGTGGCAAACAAATTAGAATTCCCTCCAGAAAAAGTGATATCAAATGTGGCTGATTATGGTAATACAAGTGCAGCTTCCATTCCATTGGCTTTAGATGAATCAGTTAGAAGTGGAAAGATTAAGGAAGGACAAATTATTGCTGCTTCTGGCTTTGGTGCTGGTCTTACTTGGGGATCAGCTATTTTTCAATGGGGATAA

Protein sequence

>MS.gene061362.t1

MYLPTSLLHLPLLSPSISSKLVCFSAHNHDSQPPLPRLVSQGCKLVGCGSAVPTLEITNDELAKIVDTSDEWISVRTGIRKRRVLSGGENLTTLSVEAARKALEMAKVDPADVDLILVCSSTSNDLFGTGPQISKQLGCKKNPAAYNITAACSGFIFGLISAASHIRGAAFQNVLVIGTDALSRYIDWTDRSSCILFGDAAGAVLVQACNYEEDCLFSFDLNSDGDGYMHLNAAYKEEGANNASDSIKGELNFPPKKYSYSCIHMNGKVVFKFAIQSVPKSIESALQKAGLPASSIDWLLLHQANQRIIDVVANKLEFPPEKVISNVADYGNTSAASIPLALDESVRSGKIKEGQIIAASGFGAGLTWGSAIFQWG