Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06137.t1 | XP_003630841.1 | 97.7 | 577 | 12 | 1 | 1 | 577 | 1 | 576 | 0.00E+00 | 1109 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06137.t1 | Q9LS46 | 60.9 | 596 | 177 | 11 | 6 | 567 | 3 | 576 | 1.4e-187 | 657.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06137.t1 | G7L917 | 97.7 | 577 | 12 | 1 | 1 | 577 | 1 | 576 | 0.0e+00 | 1109.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene06137 | 0.962414 | 7.54E-121 | -1.69E-46 |
| MS.gene049150 | MS.gene06137 | 0.839682 | 1.37E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene06137 | 0.844571 | 6.96E-59 | -1.69E-46 |
| MS.gene049910 | MS.gene06137 | 0.803073 | 4.15E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene06137 | -0.835305 | 1.81E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene06137 | 0.820271 | 7.49E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene06137 | 0.807778 | 4.28E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene06137 | 0.802815 | 4.69E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene06137 | 0.841682 | 4.10E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene06137 | 0.832424 | 9.53E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene06137 | -0.819993 | 8.67E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene06137 | 0.835862 | 1.31E-56 | -1.69E-46 |
| MS.gene052135 | MS.gene06137 | 0.801504 | 8.73E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene06137 | 0.811149 | 8.09E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene06137 | 0.811925 | 5.49E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene06137 | 0.801193 | 1.01E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene06137 | 0.813088 | 3.06E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene06137 | 0.812246 | 4.67E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene06137 | -0.821337 | 4.26E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene06137 | 0.828962 | 6.71E-55 | -1.69E-46 |
| MS.gene058139 | MS.gene06137 | 0.802108 | 6.56E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene06137 | 0.827908 | 1.21E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene06137 | 0.841032 | 6.08E-58 | -1.69E-46 |
| MS.gene059420 | MS.gene06137 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene06137 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene06137 | 0.814344 | 1.62E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene06137 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene06137 | -0.839903 | 1.20E-57 | -1.69E-46 |
| MS.gene061159 | MS.gene06137 | 0.805945 | 1.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06137.t1 | MTR_8g104110 | 97.747 | 577 | 12 | 1 | 1 | 577 | 1 | 576 | 0.0 | 1156 |
| MS.gene06137.t1 | MTR_8g104120 | 90.206 | 582 | 44 | 5 | 1 | 577 | 1 | 574 | 0.0 | 1048 |
| MS.gene06137.t1 | MTR_8g104130 | 82.504 | 583 | 77 | 6 | 1 | 577 | 1 | 564 | 0.0 | 927 |
| MS.gene06137.t1 | MTR_6g084680 | 69.900 | 598 | 147 | 9 | 4 | 577 | 7 | 595 | 0.0 | 802 |
| MS.gene06137.t1 | MTR_1g111250 | 54.965 | 564 | 214 | 11 | 9 | 560 | 12 | 547 | 0.0 | 588 |
| MS.gene06137.t1 | MTR_1g115175 | 30.709 | 508 | 318 | 8 | 51 | 556 | 23 | 498 | 5.13e-78 | 256 |
| MS.gene06137.t1 | MTR_1g115140 | 30.019 | 513 | 317 | 9 | 51 | 556 | 27 | 504 | 1.03e-77 | 255 |
| MS.gene06137.t1 | MTR_4g098570 | 32.874 | 508 | 302 | 10 | 51 | 556 | 35 | 505 | 1.85e-77 | 254 |
| MS.gene06137.t1 | MTR_1g077660 | 37.903 | 372 | 203 | 9 | 47 | 414 | 35 | 382 | 3.05e-76 | 249 |
| MS.gene06137.t1 | MTR_5g014310 | 33.072 | 511 | 304 | 9 | 51 | 556 | 43 | 520 | 1.03e-75 | 250 |
| MS.gene06137.t1 | MTR_1g115190 | 32.302 | 517 | 304 | 11 | 51 | 556 | 24 | 505 | 1.49e-75 | 250 |
| MS.gene06137.t1 | MTR_1g077670 | 36.388 | 371 | 211 | 8 | 47 | 414 | 41 | 389 | 7.68e-71 | 236 |
| MS.gene06137.t1 | MTR_4g098610 | 32.150 | 535 | 311 | 11 | 37 | 556 | 8 | 505 | 4.52e-67 | 227 |
| MS.gene06137.t1 | MTR_2g087288 | 35.474 | 327 | 193 | 5 | 65 | 386 | 37 | 350 | 6.22e-65 | 219 |
| MS.gene06137.t1 | MTR_7g106260 | 36.578 | 339 | 200 | 5 | 50 | 386 | 27 | 352 | 1.41e-60 | 208 |
| MS.gene06137.t1 | MTR_2g087285 | 34.593 | 344 | 205 | 7 | 47 | 388 | 26 | 351 | 2.12e-60 | 207 |
| MS.gene06137.t1 | MTR_4g051575 | 32.258 | 341 | 217 | 6 | 50 | 388 | 27 | 355 | 6.58e-58 | 201 |
| MS.gene06137.t1 | MTR_7g094770 | 32.070 | 343 | 212 | 10 | 70 | 405 | 61 | 389 | 1.21e-53 | 189 |
| MS.gene06137.t1 | MTR_1g077870 | 87.805 | 82 | 10 | 0 | 118 | 199 | 189 | 270 | 8.11e-41 | 149 |
| MS.gene06137.t1 | MTR_6g015325 | 87.342 | 79 | 10 | 0 | 121 | 199 | 7 | 85 | 8.12e-40 | 140 |
| MS.gene06137.t1 | MTR_4g051575 | 28.182 | 220 | 147 | 3 | 170 | 388 | 12 | 221 | 1.42e-29 | 119 |
| MS.gene06137.t1 | MTR_0710s0020 | 42.767 | 159 | 88 | 3 | 51 | 207 | 24 | 181 | 3.07e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06137.t1 | AT3G18440 | 61.474 | 597 | 172 | 12 | 6 | 567 | 3 | 576 | 0.0 | 689 |
| MS.gene06137.t1 | AT1G18420 | 61.494 | 522 | 186 | 5 | 48 | 560 | 66 | 581 | 0.0 | 645 |
| MS.gene06137.t1 | AT1G18420 | 62.500 | 504 | 174 | 5 | 66 | 560 | 1 | 498 | 0.0 | 635 |
| MS.gene06137.t1 | AT1G25480 | 54.804 | 562 | 222 | 10 | 17 | 563 | 4 | 548 | 0.0 | 570 |
| MS.gene06137.t1 | AT2G17470 | 55.019 | 538 | 207 | 10 | 44 | 573 | 37 | 547 | 0.0 | 566 |
| MS.gene06137.t1 | AT2G17470 | 55.019 | 538 | 207 | 10 | 44 | 573 | 15 | 525 | 0.0 | 566 |
| MS.gene06137.t1 | AT1G68600 | 57.426 | 505 | 193 | 7 | 62 | 560 | 45 | 533 | 0.0 | 563 |
| MS.gene06137.t1 | AT4G17970 | 32.428 | 552 | 322 | 13 | 34 | 556 | 3 | 532 | 4.86e-84 | 273 |
| MS.gene06137.t1 | AT5G46610 | 31.895 | 533 | 325 | 11 | 38 | 556 | 10 | 518 | 6.91e-82 | 266 |
| MS.gene06137.t1 | AT5G46600 | 31.530 | 536 | 328 | 11 | 38 | 556 | 12 | 525 | 2.28e-77 | 254 |
| MS.gene06137.t1 | AT1G08430 | 33.903 | 351 | 215 | 6 | 59 | 402 | 7 | 347 | 4.55e-69 | 231 |
| MS.gene06137.t1 | AT5G46610 | 28.947 | 532 | 318 | 12 | 38 | 556 | 10 | 494 | 4.01e-67 | 227 |
| MS.gene06137.t1 | AT4G00910 | 31.319 | 364 | 234 | 6 | 55 | 409 | 41 | 397 | 7.34e-67 | 225 |
| MS.gene06137.t1 | AT1G08440 | 33.634 | 333 | 205 | 6 | 59 | 386 | 7 | 328 | 2.28e-65 | 222 |
| MS.gene06137.t1 | AT5G46610 | 28.383 | 532 | 298 | 12 | 38 | 556 | 10 | 471 | 6.56e-63 | 215 |
| MS.gene06137.t1 | AT3G11680 | 37.538 | 325 | 188 | 6 | 65 | 387 | 38 | 349 | 6.62e-60 | 207 |
| MS.gene06137.t1 | AT3G11680 | 37.538 | 325 | 188 | 6 | 65 | 387 | 36 | 347 | 7.47e-60 | 207 |
| MS.gene06137.t1 | AT2G27240 | 30.769 | 338 | 224 | 5 | 59 | 394 | 7 | 336 | 7.23e-59 | 204 |
| MS.gene06137.t1 | AT2G27240 | 30.726 | 358 | 224 | 8 | 59 | 394 | 7 | 362 | 8.06e-58 | 202 |
Find 112 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTAAAGCCTTATGAATA+TGG | 0.161318 | 4.1:+2352595 | MS.gene06137:CDS |
| TGTAGCAAGGCTTCAAAATT+TGG | 0.196428 | 4.1:+2354672 | MS.gene06137:CDS |
| TCTAAGACATTGCGCATTTA+TGG | 0.211781 | 4.1:+2353719 | MS.gene06137:CDS |
| ACTTGGTGCTGCTGTCTCTT+TGG | 0.230921 | 4.1:+2352717 | MS.gene06137:CDS |
| AAGGGGTTTAATAGAGGATT+AGG | 0.232555 | 4.1:+2352439 | MS.gene06137:CDS |
| GGGTGAGAAAGCTAACTTTA+AGG | 0.239700 | 4.1:+2354714 | MS.gene06137:CDS |
| TCCTTGTAAATTCAGAGTTC+TGG | 0.243327 | 4.1:+2354314 | MS.gene06137:CDS |
| TAGTAACCTCTGGTGGATTT+TGG | 0.246906 | 4.1:+2354758 | MS.gene06137:CDS |
| TATTGCTACATTACGGTATC+TGG | 0.258630 | 4.1:+2352640 | MS.gene06137:CDS |
| TTACACTTTAGCTGAGAAAA+AGG | 0.263159 | 4.1:+2351603 | MS.gene06137:CDS |
| TGCTTGGTAAGTAAGAATTT+TGG | 0.275636 | 4.1:-2353455 | None:intergenic |
| CATGGGTGTTGCAACATCTT+TGG | 0.284675 | 4.1:+2352807 | MS.gene06137:CDS |
| CTTGGTGCTGCTGTCTCTTT+GGG | 0.292196 | 4.1:+2352718 | MS.gene06137:CDS |
| ATATCTGCATATATCCTATC+TGG | 0.298144 | 4.1:+2352746 | MS.gene06137:CDS |
| GATCTGTAGCCACTGTAAAC+TGG | 0.326018 | 4.1:-2353490 | None:intergenic |
| TCCATGTGAAAGAGGCCTTT+TGG | 0.338585 | 4.1:-2354376 | None:intergenic |
| GGTTATTCTCGTATAGGAAT+TGG | 0.346923 | 4.1:+2351661 | MS.gene06137:CDS |
| ATATTAGCCGTCACTCTGTT+TGG | 0.348827 | 4.1:+2351866 | MS.gene06137:CDS |
| GGTGGATGCATTTGAAGAAT+TGG | 0.360086 | 4.1:+2354693 | MS.gene06137:CDS |
| CTTTAAAGCCTTATGAATAT+GGG | 0.366850 | 4.1:+2352596 | MS.gene06137:CDS |
| ATGATGATCAGCACCCTTCA+TGG | 0.369715 | 4.1:-2351638 | None:intergenic |
| GATCCTGATTTCGCTAACTT+TGG | 0.373581 | 4.1:-2351574 | None:intergenic |
| CAATTGAAGTTCAAAACAAC+TGG | 0.376361 | 4.1:+2354458 | MS.gene06137:CDS |
| CCTTGTAAATTCAGAGTTCT+GGG | 0.378594 | 4.1:+2354315 | MS.gene06137:CDS |
| CATCATGGTTATTCTCGTAT+AGG | 0.388681 | 4.1:+2351655 | MS.gene06137:CDS |
| TTACTACACTTTGTTGTTCA+AGG | 0.391681 | 4.1:-2354741 | None:intergenic |
| GATCACTTATTGCTACATTA+CGG | 0.403148 | 4.1:+2352633 | MS.gene06137:CDS |
| TTCTCGTATAGGAATTGGTT+TGG | 0.404394 | 4.1:+2351666 | MS.gene06137:CDS |
| GTTCTTTGAGGAAAATCAAA+AGG | 0.413058 | 4.1:-2351831 | None:intergenic |
| ATTGAAGCAGTTAAACAATC+TGG | 0.415994 | 4.1:-2354782 | None:intergenic |
| CCCAGAACTCTGAATTTACA+AGG | 0.416133 | 4.1:-2354315 | None:intergenic |
| GCTCCAAAGTTAGCGAAATC+AGG | 0.416566 | 4.1:+2351571 | MS.gene06137:CDS |
| AATTCAGAGTTCTGGGAAAT+CGG | 0.416784 | 4.1:+2354322 | MS.gene06137:CDS |
| TATTAGCCGTCACTCTGTTT+GGG | 0.427910 | 4.1:+2351867 | MS.gene06137:CDS |
| GGAGGACTTGCTGTCGGAAT+GGG | 0.436199 | 4.1:+2352475 | MS.gene06137:CDS |
| AGGGGTTTAATAGAGGATTA+GGG | 0.437191 | 4.1:+2352440 | MS.gene06137:CDS |
| TATTCATAAGGCTTTAAAGT+TGG | 0.439512 | 4.1:-2352592 | None:intergenic |
| ATTATCAGTACATTCATTGT+TGG | 0.439559 | 4.1:+2352541 | MS.gene06137:CDS |
| GTGGATGCATTTGAAGAATT+GGG | 0.441880 | 4.1:+2354694 | MS.gene06137:CDS |
| CTTAAGAGGGTAGGCTCTGA+AGG | 0.452219 | 4.1:+2354163 | MS.gene06137:CDS |
| ATCAGCATTGGCTGGAGAAT+GGG | 0.456270 | 4.1:+2352504 | MS.gene06137:CDS |
| GCAAAAGTGTTGCGCGAACT+AGG | 0.460895 | 4.1:+2354187 | MS.gene06137:CDS |
| CTGAGCAAGGGGTTTAATAG+AGG | 0.461232 | 4.1:+2352433 | MS.gene06137:CDS |
| ATGCATACTTTCTGAAATAC+AGG | 0.466335 | 4.1:+2353758 | MS.gene06137:CDS |
| ACGGTATCTGGTTATCATAC+TGG | 0.468778 | 4.1:+2352652 | MS.gene06137:CDS |
| TATCAGCATTGGCTGGAGAA+TGG | 0.469213 | 4.1:+2352503 | MS.gene06137:CDS |
| TACAAGTAACGAGGACTCAT+TGG | 0.472395 | 4.1:+2353525 | MS.gene06137:CDS |
| GCTTTGTAGTAAACATGAGC+AGG | 0.481286 | 4.1:-2354571 | None:intergenic |
| AGATCCTCGCCAGCCCAGAT+AGG | 0.482958 | 4.1:-2352760 | None:intergenic |
| TGGAGGACTTGCTGTCGGAA+TGG | 0.492246 | 4.1:+2352474 | MS.gene06137:CDS |
| GTAGTCTTTGAATTCAGTAT+AGG | 0.495568 | 4.1:+2351907 | MS.gene06137:CDS |
| AGAACAAGATGAATCTAAGT+TGG | 0.502452 | 4.1:+2351693 | MS.gene06137:CDS |
| TACTACACTTTGTTGTTCAA+GGG | 0.506449 | 4.1:-2354740 | None:intergenic |
| TGCATATATCCTATCTGGGC+TGG | 0.507646 | 4.1:+2352751 | MS.gene06137:CDS |
| AAAACCTGTCTCTTCTCAGC+TGG | 0.512258 | 4.1:-2354130 | None:intergenic |
| TCCAAAAGGCCTCTTTCACA+TGG | 0.513682 | 4.1:+2354375 | MS.gene06137:CDS |
| GAAAATGATGATCTTCCAAA+AGG | 0.515816 | 4.1:+2354361 | MS.gene06137:CDS |
| TATCTTCATCCATGTGAAAG+AGG | 0.516928 | 4.1:-2354384 | None:intergenic |
| ATCTGTAGCCACTGTAAACT+GGG | 0.516939 | 4.1:-2353489 | None:intergenic |
| ACTTTCACATAATTCTTCCA+TGG | 0.517823 | 4.1:-2353687 | None:intergenic |
| AAGAATTATGTGAAAGTAAG+CGG | 0.517864 | 4.1:+2353693 | MS.gene06137:CDS |
| CTGGGTCATCAGCAGCTGCT+TGG | 0.517928 | 4.1:-2353471 | None:intergenic |
| CGCAATGAGCTTAAGAGGGT+AGG | 0.523161 | 4.1:+2354154 | MS.gene06137:CDS |
| GGCAGGGGCAACTCTGAGCA+AGG | 0.524454 | 4.1:+2352420 | MS.gene06137:intron |
| ACAGAAGTCTTAAATATCCA+TGG | 0.527503 | 4.1:+2353670 | MS.gene06137:CDS |
| ACATTGCGCATTTATGGTCA+TGG | 0.529280 | 4.1:+2353725 | MS.gene06137:CDS |
| ACACGGAACCCATATTCATA+AGG | 0.533524 | 4.1:-2352604 | None:intergenic |
| TGTTTACTACAAAGCAAAAG+AGG | 0.534823 | 4.1:+2354579 | MS.gene06137:CDS |
| TATCTGCATATATCCTATCT+GGG | 0.534999 | 4.1:+2352747 | MS.gene06137:CDS |
| AGAAGATGGAGAAACTAGAC+CGG | 0.537613 | 4.1:+2354221 | MS.gene06137:CDS |
| AGAATTATGTGAAAGTAAGC+GGG | 0.537807 | 4.1:+2353694 | MS.gene06137:CDS |
| AGGAAACAAAGTCAAGAAGA+TGG | 0.541103 | 4.1:+2354207 | MS.gene06137:CDS |
| AGCAAGGCTTCAAAATTTGG+TGG | 0.544776 | 4.1:+2354675 | MS.gene06137:CDS |
| GCAGGGGCAACTCTGAGCAA+GGG | 0.549777 | 4.1:+2352421 | MS.gene06137:intron |
| CAGGGGCAACTCTGAGCAAG+GGG | 0.552318 | 4.1:+2352422 | MS.gene06137:intron |
| GGAGAGTTATCAGCATTGGC+TGG | 0.555993 | 4.1:+2352496 | MS.gene06137:CDS |
| AATGGGAGAGTTATCAGCAT+TGG | 0.562176 | 4.1:+2352492 | MS.gene06137:CDS |
| GAAGTTGGGATTTGCTGTGT+GGG | 0.562279 | 4.1:+2353629 | MS.gene06137:intron |
| TTCTTTGAGGAAAATCAAAA+GGG | 0.563074 | 4.1:-2351830 | None:intergenic |
| ACTACACTTTGTTGTTCAAG+GGG | 0.569723 | 4.1:-2354739 | None:intergenic |
| GAAGATGGAGAAACTAGACC+GGG | 0.570769 | 4.1:+2354222 | MS.gene06137:CDS |
| CGATAGAAGGAGGCACATCA+TGG | 0.571917 | 4.1:-2354513 | None:intergenic |
| GGCACCAGCTGAGAAGAGAC+AGG | 0.573385 | 4.1:+2354126 | MS.gene06137:intron |
| AAATGGGTCGTTCTGATCCA+AGG | 0.574359 | 4.1:+2351761 | MS.gene06137:CDS |
| GGATTAGGGACATTCTCAGC+TGG | 0.575123 | 4.1:+2352454 | MS.gene06137:CDS |
| TGTTCGTGAAACAAACGTCT+TGG | 0.575256 | 4.1:+2354548 | MS.gene06137:CDS |
| CAACAAAGTGTAGTAACCTC+TGG | 0.585223 | 4.1:+2354748 | MS.gene06137:CDS |
| AGAAAGTATGCATCCATGCA+TGG | 0.588555 | 4.1:-2353748 | None:intergenic |
| ATGAAGGGTGCTGATCATCA+TGG | 0.588933 | 4.1:+2351640 | MS.gene06137:CDS |
| CAAAGTGTAGTAACCTCTGG+TGG | 0.600749 | 4.1:+2354751 | MS.gene06137:CDS |
| TCAGCTGGAGGACTTGCTGT+CGG | 0.601708 | 4.1:+2352469 | MS.gene06137:CDS |
| GGTGTTGCAACATCTTTGGA+AGG | 0.603727 | 4.1:+2352811 | MS.gene06137:CDS |
| TTTATGGTCATGGCCATGCA+TGG | 0.604526 | 4.1:+2353735 | MS.gene06137:CDS |
| TGAAGTTGGGATTTGCTGTG+TGG | 0.613080 | 4.1:+2353628 | MS.gene06137:intron |
| CGAGGATCTGCATAACCTTG+TGG | 0.616056 | 4.1:+2352774 | MS.gene06137:CDS |
| TAACTGTGTTGAATACAAGA+AGG | 0.623528 | 4.1:+2353426 | MS.gene06137:CDS |
| ATATCCTATCTGGGCTGGCG+AGG | 0.639896 | 4.1:+2352756 | MS.gene06137:CDS |
| CTTCATACAACAAATCTCCC+CGG | 0.643096 | 4.1:-2354240 | None:intergenic |
| AATTGAAGTTCAAAACAACT+GGG | 0.652975 | 4.1:+2354459 | MS.gene06137:CDS |
| TTAGGGACATTCTCAGCTGG+AGG | 0.653052 | 4.1:+2352457 | MS.gene06137:CDS |
| GAATAGCCCAAACAGAGTGA+CGG | 0.657361 | 4.1:-2351873 | None:intergenic |
| GCTGTGTGGGAACCACCTCA+TGG | 0.660310 | 4.1:+2353642 | MS.gene06137:CDS |
| AGACTTCTGTAGTGACCATG+AGG | 0.671026 | 4.1:-2353657 | None:intergenic |
| AATAAGTGATCAAGAACACA+CGG | 0.676225 | 4.1:-2352621 | None:intergenic |
| CTTCTGTAGTGACCATGAGG+TGG | 0.684280 | 4.1:-2353654 | None:intergenic |
| GCTGATGACCCAGTTTACAG+TGG | 0.684325 | 4.1:+2353481 | MS.gene06137:CDS |
| CTACACTTTGTTGTTCAAGG+GGG | 0.690469 | 4.1:-2354738 | None:intergenic |
| GAATTATGTGAAAGTAAGCG+GGG | 0.695698 | 4.1:+2353695 | MS.gene06137:CDS |
| TCTGGTCCAAAATCCACCAG+AGG | 0.726888 | 4.1:-2354764 | None:intergenic |
| TGTTGAATCTACAAGTAACG+AGG | 0.739666 | 4.1:+2353516 | MS.gene06137:CDS |
| AAGATGGAGAAACTAGACCG+GGG | 0.758338 | 4.1:+2354223 | MS.gene06137:CDS |
| AGAACTCTGAATTTACAAGG+AGG | 0.765806 | 4.1:-2354312 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAATTATTTGAATAAG+TGG | + | chr4.1:2352277-2352296 | MS.gene06137:intron | 15.0% |
| !! | AATCAATTATTTGAATAAGT+GGG | + | chr4.1:2352278-2352297 | MS.gene06137:intron | 15.0% |
| !!! | ATATTTTTATGACATTGAAA+AGG | - | chr4.1:2353959-2353978 | None:intergenic | 15.0% |
| !!! | ATTTTATGATAAAAATGCAA+TGG | + | chr4.1:2352392-2352411 | MS.gene06137:intron | 15.0% |
| !! | AGATAAGATAGAATAAGATA+AGG | - | chr4.1:2354059-2354078 | None:intergenic | 20.0% |
| !! | GTCTATTAATTTATTTCAAG+TGG | - | chr4.1:2352317-2352336 | None:intergenic | 20.0% |
| !! | TTGATGAATGAATATAAGTA+CGG | + | chr4.1:2352207-2352226 | MS.gene06137:intron | 20.0% |
| !! | TTGTATTTACAATGTATGTT+TGG | - | chr4.1:2353273-2353292 | None:intergenic | 20.0% |
| !! | TTTATAGGGTAAAATAAATG+TGG | - | chr4.1:2353013-2353032 | None:intergenic | 20.0% |
| !!! | GGTTGGTTAAAATATATTTT+TGG | + | chr4.1:2353931-2353950 | MS.gene06137:intron | 20.0% |
| !!! | TAGAAATTCTAAGATTGTTA+AGG | - | chr4.1:2354086-2354105 | None:intergenic | 20.0% |
| !!! | TGATTTCACTTTTATGTTTA+AGG | + | chr4.1:2353890-2353909 | MS.gene06137:intron | 20.0% |
| ! | AAAGTCATGATGTAAAATCA+CGG | - | chr4.1:2353232-2353251 | None:intergenic | 25.0% |
| ! | AAGAATTATGTGAAAGTAAG+CGG | + | chr4.1:2353693-2353712 | MS.gene06137:CDS | 25.0% |
| ! | AATTGAAGTTCAAAACAACT+GGG | + | chr4.1:2354459-2354478 | MS.gene06137:CDS | 25.0% |
| ! | ATTATCAGTACATTCATTGT+TGG | + | chr4.1:2352541-2352560 | MS.gene06137:CDS | 25.0% |
| ! | CTTGTGGTAAAAAATTTCAT+GGG | + | chr4.1:2352790-2352809 | MS.gene06137:CDS | 25.0% |
| ! | GAAAATAAGTTCAACAAAGT+TGG | - | chr4.1:2353385-2353404 | None:intergenic | 25.0% |
| ! | GATAAAAATGCAATGGAATT+TGG | + | chr4.1:2352399-2352418 | MS.gene06137:intron | 25.0% |
| ! | TAAGATAGAATAAGATAAGG+AGG | - | chr4.1:2354056-2354075 | None:intergenic | 25.0% |
| ! | TCAATAAAATCCATTTGGAT+TGG | - | chr4.1:2353362-2353381 | None:intergenic | 25.0% |
| !! | AAACTTTCTTTTTGATGCAT+AGG | + | chr4.1:2354105-2354124 | MS.gene06137:intron | 25.0% |
| !! | ATCAAGTGGATATTTTGTAA+TGG | - | chr4.1:2351984-2352003 | None:intergenic | 25.0% |
| !! | TCTAACATCACTCTTTTATA+GGG | - | chr4.1:2353027-2353046 | None:intergenic | 25.0% |
| !! | TTCTTTGAGGAAAATCAAAA+GGG | - | chr4.1:2351833-2351852 | None:intergenic | 25.0% |
| !!! | ACTTTAAAGCCTTATGAATA+TGG | + | chr4.1:2352595-2352614 | MS.gene06137:CDS | 25.0% |
| !!! | ACTTTGTTGAACTTATTTTC+AGG | + | chr4.1:2353385-2353404 | MS.gene06137:intron | 25.0% |
| !!! | ATCATTTTTGCTGCTAAAAT+GGG | + | chr4.1:2351787-2351806 | MS.gene06137:CDS | 25.0% |
| !!! | CTTTAAAGCCTTATGAATAT+GGG | + | chr4.1:2352596-2352615 | MS.gene06137:CDS | 25.0% |
| !!! | CTTTGTTGAACTTATTTTCA+GGG | + | chr4.1:2353386-2353405 | MS.gene06137:intron | 25.0% |
| !!! | GATCTTTTGTTGTAATTCTT+CGG | - | chr4.1:2354278-2354297 | None:intergenic | 25.0% |
| !!! | TATTCATAAGGCTTTAAAGT+TGG | - | chr4.1:2352595-2352614 | None:intergenic | 25.0% |
| !!! | TTTGTTGAACTTATTTTCAG+GGG | + | chr4.1:2353387-2353406 | MS.gene06137:intron | 25.0% |
| !!! | TTTTGATTGAATTTGTAGCA+AGG | + | chr4.1:2354659-2354678 | MS.gene06137:CDS | 25.0% |
| AACATAAAAGTGAAATCAGC+AGG | - | chr4.1:2353888-2353907 | None:intergenic | 30.0% | |
| AATAAGTGATCAAGAACACA+CGG | - | chr4.1:2352624-2352643 | None:intergenic | 30.0% | |
| AATTCATGAGTCAATTTCTG+AGG | + | chr4.1:2352342-2352361 | MS.gene06137:intron | 30.0% | |
| ACAGAAGTCTTAAATATCCA+TGG | + | chr4.1:2353670-2353689 | MS.gene06137:CDS | 30.0% | |
| ACTTTCACATAATTCTTCCA+TGG | - | chr4.1:2353690-2353709 | None:intergenic | 30.0% | |
| AGAACAAGATGAATCTAAGT+TGG | + | chr4.1:2351693-2351712 | MS.gene06137:CDS | 30.0% | |
| AGAATTATGTGAAAGTAAGC+GGG | + | chr4.1:2353694-2353713 | MS.gene06137:CDS | 30.0% | |
| ATATCTGCATATATCCTATC+TGG | + | chr4.1:2352746-2352765 | MS.gene06137:CDS | 30.0% | |
| ATTGAAGCAGTTAAACAATC+TGG | - | chr4.1:2354785-2354804 | None:intergenic | 30.0% | |
| CAATTGAAGTTCAAAACAAC+TGG | + | chr4.1:2354458-2354477 | MS.gene06137:CDS | 30.0% | |
| CCTTGTGGTAAAAAATTTCA+TGG | + | chr4.1:2352789-2352808 | MS.gene06137:CDS | 30.0% | |
| GAAAAACTTCTATCCATGAA+GGG | + | chr4.1:2351625-2351644 | MS.gene06137:CDS | 30.0% | |
| GAAAATGATGATCTTCCAAA+AGG | + | chr4.1:2354361-2354380 | MS.gene06137:CDS | 30.0% | |
| GATCACTTATTGCTACATTA+CGG | + | chr4.1:2352633-2352652 | MS.gene06137:CDS | 30.0% | |
| GCAAATAAAATCTGATCATG+AGG | - | chr4.1:2352853-2352872 | None:intergenic | 30.0% | |
| GTAGTCTTTGAATTCAGTAT+AGG | + | chr4.1:2351907-2351926 | MS.gene06137:CDS | 30.0% | |
| GTTGGTCAATAAAATCCATT+TGG | - | chr4.1:2353367-2353386 | None:intergenic | 30.0% | |
| TAACTGTGTTGAATACAAGA+AGG | + | chr4.1:2353426-2353445 | MS.gene06137:CDS | 30.0% | |
| TACGGTATAGTAGTTTGATA+GGG | + | chr4.1:2352225-2352244 | MS.gene06137:intron | 30.0% | |
| TAGAATAAGATAAGGAGGTT+CGG | - | chr4.1:2354051-2354070 | None:intergenic | 30.0% | |
| TATATTGGGTAAAACCAATG+CGG | + | chr4.1:2352946-2352965 | MS.gene06137:intron | 30.0% | |
| TATCTGCATATATCCTATCT+GGG | + | chr4.1:2352747-2352766 | MS.gene06137:CDS | 30.0% | |
| TATTACAATTGTCGATGTGT+CGG | + | chr4.1:2352094-2352113 | MS.gene06137:intron | 30.0% | |
| TCTTTGAATTCAGTATAGGT+AGG | + | chr4.1:2351911-2351930 | MS.gene06137:intron | 30.0% | |
| TGTAACTAATGCATATCAAG+TGG | - | chr4.1:2351998-2352017 | None:intergenic | 30.0% | |
| TGTTTACTACAAAGCAAAAG+AGG | + | chr4.1:2354579-2354598 | MS.gene06137:CDS | 30.0% | |
| TTACACTTTAGCTGAGAAAA+AGG | + | chr4.1:2351603-2351622 | MS.gene06137:CDS | 30.0% | |
| ! | ATAAAATCCATTTGGATTGG+CGG | - | chr4.1:2353359-2353378 | None:intergenic | 30.0% |
| ! | CATTTTTGAATGGTTCTTTG+AGG | - | chr4.1:2351846-2351865 | None:intergenic | 30.0% |
| ! | CTCTAACATCACTCTTTTAT+AGG | - | chr4.1:2353028-2353047 | None:intergenic | 30.0% |
| ! | GTTCTTTGAGGAAAATCAAA+AGG | - | chr4.1:2351834-2351853 | None:intergenic | 30.0% |
| ! | TGAGAACAAAAACAGTGTTT+TGG | - | chr4.1:2353808-2353827 | None:intergenic | 30.0% |
| ! | TGCTTGGTAAGTAAGAATTT+TGG | - | chr4.1:2353458-2353477 | None:intergenic | 30.0% |
| ! | TGGTAAGTAAGAATTTTGGA+TGG | - | chr4.1:2353454-2353473 | None:intergenic | 30.0% |
| ! | TTTCACGAACATGTTTTCAT+TGG | - | chr4.1:2354539-2354558 | None:intergenic | 30.0% |
| ! | TTTTCTCAGCTAAAGTGTAA+CGG | - | chr4.1:2351603-2351622 | None:intergenic | 30.0% |
| !! | ACACTGATGTTTTAGATTGA+AGG | + | chr4.1:2352020-2352039 | MS.gene06137:intron | 30.0% |
| !! | ATGCATACTTTCTGAAATAC+AGG | + | chr4.1:2353758-2353777 | MS.gene06137:CDS | 30.0% |
| !! | CGGCTAATATCATTTTTGAA+TGG | - | chr4.1:2351856-2351875 | None:intergenic | 30.0% |
| !! | GATCATTTTTGCTGCTAAAA+TGG | + | chr4.1:2351786-2351805 | MS.gene06137:CDS | 30.0% |
| !! | TAAATTGAAAGCATTGAAGC+TGG | - | chr4.1:2352373-2352392 | None:intergenic | 30.0% |
| !! | TACTACACTTTGTTGTTCAA+GGG | - | chr4.1:2354743-2354762 | None:intergenic | 30.0% |
| !! | TTACTACACTTTGTTGTTCA+AGG | - | chr4.1:2354744-2354763 | None:intergenic | 30.0% |
| !!! | CCATGAAATTTTTTACCACA+AGG | - | chr4.1:2352792-2352811 | None:intergenic | 30.0% |
| AAAAGAGTGATGTTAGAGAG+AGG | + | chr4.1:2353030-2353049 | MS.gene06137:intron | 35.0% | |
| AAAATGCAATGGAATTTGGC+AGG | + | chr4.1:2352403-2352422 | MS.gene06137:intron | 35.0% | |
| AAAGAGTGATGTTAGAGAGA+GGG | + | chr4.1:2353031-2353050 | MS.gene06137:intron | 35.0% | |
| AAATGCAATGGAATTTGGCA+GGG | + | chr4.1:2352404-2352423 | MS.gene06137:intron | 35.0% | |
| AACTCATTGCTGAAAAAGCA+TGG | + | chr4.1:2351737-2351756 | MS.gene06137:CDS | 35.0% | |
| AAGGGGTTTAATAGAGGATT+AGG | + | chr4.1:2352439-2352458 | MS.gene06137:CDS | 35.0% | |
| ACGGTATAGTAGTTTGATAG+GGG | + | chr4.1:2352226-2352245 | MS.gene06137:intron | 35.0% | |
| AGAACTCTGAATTTACAAGG+AGG | - | chr4.1:2354315-2354334 | None:intergenic | 35.0% | |
| AGGAAACAAAGTCAAGAAGA+TGG | + | chr4.1:2354207-2354226 | MS.gene06137:CDS | 35.0% | |
| AGGGGTTTAATAGAGGATTA+GGG | + | chr4.1:2352440-2352459 | MS.gene06137:CDS | 35.0% | |
| AGTGTCTTATATGAAGTGGT+TGG | + | chr4.1:2353914-2353933 | MS.gene06137:intron | 35.0% | |
| CATCATGGTTATTCTCGTAT+AGG | + | chr4.1:2351655-2351674 | MS.gene06137:CDS | 35.0% | |
| CATGATGTAAAATCACGGTA+AGG | - | chr4.1:2353227-2353246 | None:intergenic | 35.0% | |
| CCTTGTAAATTCAGAGTTCT+GGG | + | chr4.1:2354315-2354334 | MS.gene06137:CDS | 35.0% | |
| GAACCACTCACTCTTATATT+GGG | + | chr4.1:2352932-2352951 | MS.gene06137:intron | 35.0% | |
| GAATTATGTGAAAGTAAGCG+GGG | + | chr4.1:2353695-2353714 | MS.gene06137:CDS | 35.0% | |
| GGAAAAACTTCTATCCATGA+AGG | + | chr4.1:2351624-2351643 | MS.gene06137:CDS | 35.0% | |
| GGTTATTCTCGTATAGGAAT+TGG | + | chr4.1:2351661-2351680 | MS.gene06137:CDS | 35.0% | |
| GTACGGTATAGTAGTTTGAT+AGG | + | chr4.1:2352224-2352243 | MS.gene06137:intron | 35.0% | |
| GTACTAAGTTGTATATGCTC+TGG | - | chr4.1:2353833-2353852 | None:intergenic | 35.0% | |
| GTGGATGCATTTGAAGAATT+GGG | + | chr4.1:2354694-2354713 | MS.gene06137:CDS | 35.0% | |
| TAAAATCACGGTAAGGCAAA+AGG | - | chr4.1:2353220-2353239 | None:intergenic | 35.0% | |
| TAAATGTGGATTCCACACAT+TGG | - | chr4.1:2352999-2353018 | None:intergenic | 35.0% | |
| TATCTTCATCCATGTGAAAG+AGG | - | chr4.1:2354387-2354406 | None:intergenic | 35.0% | |
| TATTGCTACATTACGGTATC+TGG | + | chr4.1:2352640-2352659 | MS.gene06137:CDS | 35.0% | |
| TCCTTGTAAATTCAGAGTTC+TGG | + | chr4.1:2354314-2354333 | MS.gene06137:CDS | 35.0% | |
| TGTAGCAAGGCTTCAAAATT+TGG | + | chr4.1:2354672-2354691 | MS.gene06137:CDS | 35.0% | |
| TGTTGAATCTACAAGTAACG+AGG | + | chr4.1:2353516-2353535 | MS.gene06137:CDS | 35.0% | |
| TTACCCAATATAAGAGTGAG+TGG | - | chr4.1:2352938-2352957 | None:intergenic | 35.0% | |
| TTCTCGTATAGGAATTGGTT+TGG | + | chr4.1:2351666-2351685 | MS.gene06137:CDS | 35.0% | |
| TTGAATAAGTGGGTCAGATT+TGG | + | chr4.1:2352288-2352307 | MS.gene06137:intron | 35.0% | |
| ! | ACTCATTGCTGAAAAAGCAT+GGG | + | chr4.1:2351738-2351757 | MS.gene06137:CDS | 35.0% |
| ! | AGATCATCATTTTCGTCTCT+AGG | - | chr4.1:2354355-2354374 | None:intergenic | 35.0% |
| ! | AGATTTTTGCTCATTGCACT+TGG | + | chr4.1:2352700-2352719 | MS.gene06137:CDS | 35.0% |
| ! | ATGTTTTCATTGGCGATAGA+AGG | - | chr4.1:2354529-2354548 | None:intergenic | 35.0% |
| ! | TCTAAGACATTGCGCATTTA+TGG | + | chr4.1:2353719-2353738 | MS.gene06137:CDS | 35.0% |
| ! | TTTTCGCAATGAGCTTAAGA+GGG | + | chr4.1:2354150-2354169 | MS.gene06137:CDS | 35.0% |
| ! | TTTTTCGCAATGAGCTTAAG+AGG | + | chr4.1:2354149-2354168 | MS.gene06137:CDS | 35.0% |
| !! | AATTCAGAGTTCTGGGAAAT+CGG | + | chr4.1:2354322-2354341 | MS.gene06137:CDS | 35.0% |
| !! | ACTACACTTTGTTGTTCAAG+GGG | - | chr4.1:2354742-2354761 | None:intergenic | 35.0% |
| !! | AGGAAGTGTCTTATATGAAG+TGG | + | chr4.1:2353910-2353929 | MS.gene06137:intron | 35.0% |
| !! | TGATGTCGATTCAATGATGT+GGG | - | chr4.1:2354017-2354036 | None:intergenic | 35.0% |
| !! | TTGATGTCGATTCAATGATG+TGG | - | chr4.1:2354018-2354037 | None:intergenic | 35.0% |
| AATGCAATGGAATTTGGCAG+GGG | + | chr4.1:2352405-2352424 | MS.gene06137:intron | 40.0% | |
| AATGGGAGAGTTATCAGCAT+TGG | + | chr4.1:2352492-2352511 | MS.gene06137:CDS | 40.0% | |
| ACACGGAACCCATATTCATA+AGG | - | chr4.1:2352607-2352626 | None:intergenic | 40.0% | |
| ACATTGCGCATTTATGGTCA+TGG | + | chr4.1:2353725-2353744 | MS.gene06137:CDS | 40.0% | |
| ACGGTATCTGGTTATCATAC+TGG | + | chr4.1:2352652-2352671 | MS.gene06137:CDS | 40.0% | |
| AGAAGATGGAGAAACTAGAC+CGG | + | chr4.1:2354221-2354240 | MS.gene06137:CDS | 40.0% | |
| AGCAAGGCTTCAAAATTTGG+TGG | + | chr4.1:2354675-2354694 | MS.gene06137:CDS | 40.0% | |
| ATAGTAGTTTGATAGGGGCA+GGG | + | chr4.1:2352231-2352250 | MS.gene06137:intron | 40.0% | |
| ATATAAGAGTGAGTGGTTCC+TGG | - | chr4.1:2352931-2352950 | None:intergenic | 40.0% | |
| ATATTAGCCGTCACTCTGTT+TGG | + | chr4.1:2351866-2351885 | MS.gene06137:CDS | 40.0% | |
| ATCTGTAGCCACTGTAAACT+GGG | - | chr4.1:2353492-2353511 | None:intergenic | 40.0% | |
| CAACAAAGTGTAGTAACCTC+TGG | + | chr4.1:2354748-2354767 | MS.gene06137:CDS | 40.0% | |
| CCCAGAACTCTGAATTTACA+AGG | - | chr4.1:2354318-2354337 | None:intergenic | 40.0% | |
| CTTCATACAACAAATCTCCC+CGG | - | chr4.1:2354243-2354262 | None:intergenic | 40.0% | |
| GATCCTGATTTCGCTAACTT+TGG | - | chr4.1:2351577-2351596 | None:intergenic | 40.0% | |
| GCAGCAAAAATGATCTTCCT+TGG | - | chr4.1:2351781-2351800 | None:intergenic | 40.0% | |
| GCTTTGTAGTAAACATGAGC+AGG | - | chr4.1:2354574-2354593 | None:intergenic | 40.0% | |
| GGAAATGGTCACACATAAAG+TGG | - | chr4.1:2352978-2352997 | None:intergenic | 40.0% | |
| GGAACCACTCACTCTTATAT+TGG | + | chr4.1:2352931-2352950 | MS.gene06137:intron | 40.0% | |
| GGGTGAGAAAGCTAACTTTA+AGG | + | chr4.1:2354714-2354733 | MS.gene06137:CDS | 40.0% | |
| GGTGGATGCATTTGAAGAAT+TGG | + | chr4.1:2354693-2354712 | MS.gene06137:CDS | 40.0% | |
| TAAAGTGGTATGAACCGCAT+TGG | - | chr4.1:2352963-2352982 | None:intergenic | 40.0% | |
| TACAAGTAACGAGGACTCAT+TGG | + | chr4.1:2353525-2353544 | MS.gene06137:CDS | 40.0% | |
| TATAGTAGTTTGATAGGGGC+AGG | + | chr4.1:2352230-2352249 | MS.gene06137:intron | 40.0% | |
| TATTAGCCGTCACTCTGTTT+GGG | + | chr4.1:2351867-2351886 | MS.gene06137:CDS | 40.0% | |
| TGGATTCCACACATTGGAAA+TGG | - | chr4.1:2352993-2353012 | None:intergenic | 40.0% | |
| TGTTCGTGAAACAAACGTCT+TGG | + | chr4.1:2354548-2354567 | MS.gene06137:CDS | 40.0% | |
| ! | AGAAAGTATGCATCCATGCA+TGG | - | chr4.1:2353751-2353770 | None:intergenic | 40.0% |
| ! | GCTGAAAAAGCATGGGAAAT+GGG | + | chr4.1:2351745-2351764 | MS.gene06137:CDS | 40.0% |
| ! | TGCTGAAAAAGCATGGGAAA+TGG | + | chr4.1:2351744-2351763 | MS.gene06137:CDS | 40.0% |
| ! | TTTTCATTGGCGATAGAAGG+AGG | - | chr4.1:2354526-2354545 | None:intergenic | 40.0% |
| !! | ACGTGTTGGTGATTGAAGTT+GGG | + | chr4.1:2353615-2353634 | MS.gene06137:intron | 40.0% |
| !! | CATCATTTTCGTCTCTAGGA+CGG | - | chr4.1:2354351-2354370 | None:intergenic | 40.0% |
| !! | CTACACTTTGTTGTTCAAGG+GGG | - | chr4.1:2354741-2354760 | None:intergenic | 40.0% |
| !!! | TAGTAACCTCTGGTGGATTT+TGG | + | chr4.1:2354758-2354777 | MS.gene06137:CDS | 40.0% |
| AAAACCTGTCTCTTCTCAGC+TGG | - | chr4.1:2354133-2354152 | None:intergenic | 45.0% | |
| AAATGGGTCGTTCTGATCCA+AGG | + | chr4.1:2351761-2351780 | MS.gene06137:CDS | 45.0% | |
| AAGATGGAGAAACTAGACCG+GGG | + | chr4.1:2354223-2354242 | MS.gene06137:CDS | 45.0% | |
| AATGACTCACTGTCACGTGT+TGG | + | chr4.1:2353601-2353620 | MS.gene06137:intron | 45.0% | |
| AGACTTCTGTAGTGACCATG+AGG | - | chr4.1:2353660-2353679 | None:intergenic | 45.0% | |
| AGTGATGTTAGAGAGAGGGA+GGG | + | chr4.1:2353035-2353054 | MS.gene06137:intron | 45.0% | |
| ATGATGATCAGCACCCTTCA+TGG | - | chr4.1:2351641-2351660 | None:intergenic | 45.0% | |
| CAAAGTGTAGTAACCTCTGG+TGG | + | chr4.1:2354751-2354770 | MS.gene06137:CDS | 45.0% | |
| CTGAGCAAGGGGTTTAATAG+AGG | + | chr4.1:2352433-2352452 | MS.gene06137:CDS | 45.0% | |
| GAAGATGGAGAAACTAGACC+GGG | + | chr4.1:2354222-2354241 | MS.gene06137:CDS | 45.0% | |
| GAATAGCCCAAACAGAGTGA+CGG | - | chr4.1:2351876-2351895 | None:intergenic | 45.0% | |
| GATCTGTAGCCACTGTAAAC+TGG | - | chr4.1:2353493-2353512 | None:intergenic | 45.0% | |
| GCTCCAAAGTTAGCGAAATC+AGG | + | chr4.1:2351571-2351590 | MS.gene06137:CDS | 45.0% | |
| GTGTGACCATTTCCAATGTG+TGG | + | chr4.1:2352984-2353003 | MS.gene06137:intron | 45.0% | |
| TAGTAGTTTGATAGGGGCAG+GGG | + | chr4.1:2352232-2352251 | MS.gene06137:intron | 45.0% | |
| TCAGCAGGCTACTCATCATA+TGG | - | chr4.1:2353873-2353892 | None:intergenic | 45.0% | |
| TCCAAAAGGCCTCTTTCACA+TGG | + | chr4.1:2354375-2354394 | MS.gene06137:CDS | 45.0% | |
| TGCATATATCCTATCTGGGC+TGG | + | chr4.1:2352751-2352770 | MS.gene06137:CDS | 45.0% | |
| TTTATGGTCATGGCCATGCA+TGG | + | chr4.1:2353735-2353754 | MS.gene06137:CDS | 45.0% | |
| ! | CATGGGTGTTGCAACATCTT+TGG | + | chr4.1:2352807-2352826 | MS.gene06137:CDS | 45.0% |
| ! | GGTGTTGCAACATCTTTGGA+AGG | + | chr4.1:2352811-2352830 | MS.gene06137:CDS | 45.0% |
| ! | GTCGATTCAATGATGTGGGA+AGG | - | chr4.1:2354013-2354032 | None:intergenic | 45.0% |
| ! | TCCATGTGAAAGAGGCCTTT+TGG | - | chr4.1:2354379-2354398 | None:intergenic | 45.0% |
| !! | ATCAGCATTGGCTGGAGAAT+GGG | + | chr4.1:2352504-2352523 | MS.gene06137:CDS | 45.0% |
| !! | ATGAAGGGTGCTGATCATCA+TGG | + | chr4.1:2351640-2351659 | MS.gene06137:CDS | 45.0% |
| !! | CACGTGTTGGTGATTGAAGT+TGG | + | chr4.1:2353614-2353633 | MS.gene06137:intron | 45.0% |
| !! | GAAGTTGGGATTTGCTGTGT+GGG | + | chr4.1:2353629-2353648 | MS.gene06137:intron | 45.0% |
| !! | TATCAGCATTGGCTGGAGAA+TGG | + | chr4.1:2352503-2352522 | MS.gene06137:CDS | 45.0% |
| !! | TGAAGTTGGGATTTGCTGTG+TGG | + | chr4.1:2353628-2353647 | MS.gene06137:intron | 45.0% |
| !!! | TTTTATTTTATTTTTCTATT+TGG | + | chr4.1:2353175-2353194 | MS.gene06137:intron | 5.0% |
| ATGTTAGAGAGAGGGAGGGA+GGG | + | chr4.1:2353039-2353058 | MS.gene06137:intron | 50.0% | |
| CGAGGATCTGCATAACCTTG+TGG | + | chr4.1:2352774-2352793 | MS.gene06137:CDS | 50.0% | |
| CGCAATGAGCTTAAGAGGGT+AGG | + | chr4.1:2354154-2354173 | MS.gene06137:CDS | 50.0% | |
| CTTCTGTAGTGACCATGAGG+TGG | - | chr4.1:2353657-2353676 | None:intergenic | 50.0% | |
| GAGTGATGTTAGAGAGAGGG+AGG | + | chr4.1:2353034-2353053 | MS.gene06137:intron | 50.0% | |
| GCTGATGACCCAGTTTACAG+TGG | + | chr4.1:2353481-2353500 | MS.gene06137:CDS | 50.0% | |
| GGATTAGGGACATTCTCAGC+TGG | + | chr4.1:2352454-2352473 | MS.gene06137:CDS | 50.0% | |
| TACCTCACCGCCAATCCAAA+TGG | + | chr4.1:2353349-2353368 | MS.gene06137:intron | 50.0% | |
| TCTGGTCCAAAATCCACCAG+AGG | - | chr4.1:2354767-2354786 | None:intergenic | 50.0% | |
| TTAGGGACATTCTCAGCTGG+AGG | + | chr4.1:2352457-2352476 | MS.gene06137:CDS | 50.0% | |
| ! | CGATAGAAGGAGGCACATCA+TGG | - | chr4.1:2354516-2354535 | None:intergenic | 50.0% |
| ! | CTTAAGAGGGTAGGCTCTGA+AGG | + | chr4.1:2354163-2354182 | MS.gene06137:CDS | 50.0% |
| !! | ACTTGGTGCTGCTGTCTCTT+TGG | + | chr4.1:2352717-2352736 | MS.gene06137:CDS | 50.0% |
| !! | ATCCATTTGGATTGGCGGTG+AGG | - | chr4.1:2353354-2353373 | None:intergenic | 50.0% |
| !! | CTTGGTGCTGCTGTCTCTTT+GGG | + | chr4.1:2352718-2352737 | MS.gene06137:CDS | 50.0% |
| !! | GCAAAAGTGTTGCGCGAACT+AGG | + | chr4.1:2354187-2354206 | MS.gene06137:CDS | 50.0% |
| !! | GGAGAGTTATCAGCATTGGC+TGG | + | chr4.1:2352496-2352515 | MS.gene06137:CDS | 50.0% |
| GATGTTAGAGAGAGGGAGGG+AGG | + | chr4.1:2353038-2353057 | MS.gene06137:intron | 55.0% | |
| GGCGGTGAGGTAGCAGAATA+AGG | - | chr4.1:2353341-2353360 | None:intergenic | 55.0% | |
| !! | ATATCCTATCTGGGCTGGCG+AGG | + | chr4.1:2352756-2352775 | MS.gene06137:CDS | 55.0% |
| !! | GGAGGACTTGCTGTCGGAAT+GGG | + | chr4.1:2352475-2352494 | MS.gene06137:CDS | 55.0% |
| !! | TCAGCTGGAGGACTTGCTGT+CGG | + | chr4.1:2352469-2352488 | MS.gene06137:CDS | 55.0% |
| !! | TGGAGGACTTGCTGTCGGAA+TGG | + | chr4.1:2352474-2352493 | MS.gene06137:CDS | 55.0% |
| AGATCCTCGCCAGCCCAGAT+AGG | - | chr4.1:2352763-2352782 | None:intergenic | 60.0% | |
| ATGCGCGTGCGAGAAATGCC+AGG | + | chr4.1:2352910-2352929 | MS.gene06137:intron | 60.0% | |
| CAGGGGCAACTCTGAGCAAG+GGG | + | chr4.1:2352422-2352441 | MS.gene06137:intron | 60.0% | |
| CTGGGTCATCAGCAGCTGCT+TGG | - | chr4.1:2353474-2353493 | None:intergenic | 60.0% | |
| GCAGGGGCAACTCTGAGCAA+GGG | + | chr4.1:2352421-2352440 | MS.gene06137:intron | 60.0% | |
| GCTGTGTGGGAACCACCTCA+TGG | + | chr4.1:2353642-2353661 | MS.gene06137:CDS | 60.0% | |
| GGCACCAGCTGAGAAGAGAC+AGG | + | chr4.1:2354126-2354145 | MS.gene06137:intron | 60.0% | |
| TAGAGAGAGGGAGGGAGGGA+GGG | + | chr4.1:2353043-2353062 | MS.gene06137:intron | 60.0% | |
| TTAGAGAGAGGGAGGGAGGG+AGG | + | chr4.1:2353042-2353061 | MS.gene06137:intron | 60.0% | |
| GGCAGGGGCAACTCTGAGCA+AGG | + | chr4.1:2352420-2352439 | MS.gene06137:intron | 65.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | + | chr4.1:2353046-2353065 | MS.gene06137:intron | 70.0% | |
| AGGGAGGGAGAGAGGGAGGG+GGG | + | chr4.1:2353062-2353081 | MS.gene06137:intron | 70.0% | |
| AGGGAGGGAGGGAGAGAGGG+AGG | + | chr4.1:2353058-2353077 | MS.gene06137:intron | 70.0% | |
| AGGGAGGGAGGGAGGGAGAG+AGG | + | chr4.1:2353054-2353073 | MS.gene06137:intron | 70.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | + | chr4.1:2353047-2353066 | MS.gene06137:intron | 70.0% | |
| GAGGGAGGGAGAGAGGGAGG+GGG | + | chr4.1:2353061-2353080 | MS.gene06137:intron | 70.0% | |
| GGAGGGAGGGAGAGAGGGAG+GGG | + | chr4.1:2353060-2353079 | MS.gene06137:intron | 70.0% | |
| GGGAGGGAGGGAGAGAGGGA+GGG | + | chr4.1:2353059-2353078 | MS.gene06137:intron | 70.0% | |
| GGGAGGGAGGGAGGGAGAGA+GGG | + | chr4.1:2353055-2353074 | MS.gene06137:intron | 70.0% | |
| AGAGAGGGAGGGGGGGAGGG+GGG | + | chr4.1:2353070-2353089 | MS.gene06137:intron | 75.0% | |
| AGGGAGAGAGGGAGGGGGGG+AGG | + | chr4.1:2353066-2353085 | MS.gene06137:intron | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | chr4.1:2353050-2353069 | MS.gene06137:intron | 75.0% | |
| GAGAGAGGGAGGGGGGGAGG+GGG | + | chr4.1:2353069-2353088 | MS.gene06137:intron | 75.0% | |
| GGAGAGAGGGAGGGGGGGAG+GGG | + | chr4.1:2353068-2353087 | MS.gene06137:intron | 75.0% | |
| GGGAGAGAGGGAGGGGGGGA+GGG | + | chr4.1:2353067-2353086 | MS.gene06137:intron | 75.0% | |
| GGGAGGGAGAGAGGGAGGGG+GGG | + | chr4.1:2353063-2353082 | MS.gene06137:intron | 75.0% | |
| GGGAGGGAGGGAGGGAGGGA+GGG | + | chr4.1:2353051-2353070 | MS.gene06137:intron | 75.0% | |
| ! | AGGGGGGGAGGGAGGGAGGG+AGG | + | chr4.1:2353086-2353105 | MS.gene06137:intron | 80.0% |
| ! | GAGAGGGAGGGGGGGAGGGG+GGG | + | chr4.1:2353071-2353090 | MS.gene06137:intron | 80.0% |
| ! | GGGAGGGGGGGAGGGAGGGA+GGG | + | chr4.1:2353083-2353102 | MS.gene06137:intron | 80.0% |
| ! | GGGGAGGGAGGGAGGGAGGG+AGG | + | chr4.1:2353090-2353109 | MS.gene06137:intron | 80.0% |
| ! | GGGGGGGAGGGAGGGAGGGA+GGG | + | chr4.1:2353087-2353106 | MS.gene06137:intron | 80.0% |
| ! | AGGGAGGGGGGGAGGGGGGG+AGG | + | chr4.1:2353074-2353093 | MS.gene06137:intron | 85.0% |
| ! | AGGGGGGGAGGGGGGGAGGG+AGG | + | chr4.1:2353078-2353097 | MS.gene06137:intron | 85.0% |
| ! | GGGAGGGGGGGAGGGGGGGA+GGG | + | chr4.1:2353075-2353094 | MS.gene06137:intron | 85.0% |
| ! | GGGGAGGGGGGGAGGGAGGG+AGG | + | chr4.1:2353082-2353101 | MS.gene06137:intron | 85.0% |
| ! | GGGGGGGAGGGGGGGAGGGA+GGG | + | chr4.1:2353079-2353098 | MS.gene06137:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2351568 | 2354807 | 2351568 | ID=MS.gene06137 |
| chr4.1 | mRNA | 2351568 | 2354807 | 2351568 | ID=MS.gene06137.t1;Parent=MS.gene06137 |
| chr4.1 | exon | 2351568 | 2351928 | 2351568 | ID=MS.gene06137.t1.exon1;Parent=MS.gene06137.t1 |
| chr4.1 | CDS | 2351568 | 2351928 | 2351568 | ID=cds.MS.gene06137.t1;Parent=MS.gene06137.t1 |
| chr4.1 | exon | 2352425 | 2352832 | 2352425 | ID=MS.gene06137.t1.exon2;Parent=MS.gene06137.t1 |
| chr4.1 | CDS | 2352425 | 2352832 | 2352425 | ID=cds.MS.gene06137.t1;Parent=MS.gene06137.t1 |
| chr4.1 | exon | 2353407 | 2353546 | 2353407 | ID=MS.gene06137.t1.exon3;Parent=MS.gene06137.t1 |
| chr4.1 | CDS | 2353407 | 2353546 | 2353407 | ID=cds.MS.gene06137.t1;Parent=MS.gene06137.t1 |
| chr4.1 | exon | 2353633 | 2353779 | 2353633 | ID=MS.gene06137.t1.exon4;Parent=MS.gene06137.t1 |
| chr4.1 | CDS | 2353633 | 2353779 | 2353633 | ID=cds.MS.gene06137.t1;Parent=MS.gene06137.t1 |
| chr4.1 | exon | 2354127 | 2354807 | 2354127 | ID=MS.gene06137.t1.exon5;Parent=MS.gene06137.t1 |
| chr4.1 | CDS | 2354127 | 2354807 | 2354127 | ID=cds.MS.gene06137.t1;Parent=MS.gene06137.t1 |
| Gene Sequence |
| Protein sequence |
