AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061787

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061787.t1 MTR_8g090190 99.458 369 2 0 1 369 1 369 0.0 766
MS.gene061787.t1 MTR_3g087140 87.052 363 47 0 1 363 1 363 0.0 665
MS.gene061787.t1 MTR_6g022310 30.704 355 191 10 17 364 121 427 2.43e-37 142
MS.gene061787.t1 MTR_4g130940 30.682 352 192 10 24 365 93 402 6.44e-36 139
MS.gene061787.t1 MTR_4g130940 30.682 352 192 10 24 365 93 402 6.62e-36 139
MS.gene061787.t1 MTR_3g100480 29.462 353 198 10 21 365 582 891 2.64e-35 137
MS.gene061787.t1 MTR_5g030360 30.259 347 186 9 24 364 155 451 5.61e-35 136
MS.gene061787.t1 MTR_6g022290 29.775 356 193 11 17 364 23 329 3.31e-33 130
MS.gene061787.t1 MTR_3g100480 27.441 379 202 10 21 365 582 921 5.23e-33 130
MS.gene061787.t1 MTR_5g066000 28.857 350 199 10 23 365 542 848 2.51e-32 129
MS.gene061787.t1 MTR_1g014680 29.321 324 181 9 24 334 182 470 2.04e-31 126
MS.gene061787.t1 MTR_4g115880 26.744 430 187 14 16 360 192 578 2.33e-31 125
MS.gene061787.t1 MTR_2g071620 29.714 350 196 10 24 365 465 772 2.70e-31 125
MS.gene061787.t1 MTR_6g022300 29.023 348 192 11 24 364 68 367 6.03e-31 124
MS.gene061787.t1 MTR_1g014260 29.223 373 182 15 16 340 176 514 2.21e-30 122
MS.gene061787.t1 MTR_5g032380 28.483 323 192 8 23 338 424 714 1.03e-29 121
MS.gene061787.t1 MTR_8g067060 27.011 348 195 9 24 364 204 499 2.92e-28 116
MS.gene061787.t1 MTR_8g471100 27.011 348 195 9 24 364 213 508 3.26e-28 115
MS.gene061787.t1 MTR_5g430360 30.272 294 151 9 78 364 37 283 6.18e-28 115
MS.gene061787.t1 MTR_2g070390 27.083 336 198 6 23 342 22 326 1.00e-27 115
MS.gene061787.t1 MTR_1g010040 29.747 316 172 8 24 330 108 382 1.65e-27 114
MS.gene061787.t1 MTR_3g108660 29.841 315 173 9 24 330 108 382 1.84e-27 114
MS.gene061787.t1 MTR_1g010040 29.747 316 172 8 24 330 108 382 2.04e-27 114
MS.gene061787.t1 MTR_3g108660 29.841 315 173 9 24 330 108 382 2.18e-27 114
MS.gene061787.t1 MTR_5g086700 27.434 339 191 12 22 347 203 499 3.77e-20 92.8
MS.gene061787.t1 MTR_5g086700 27.434 339 191 12 22 347 203 499 3.95e-20 92.8
MS.gene061787.t1 MTR_8g064910 26.781 351 198 14 24 364 55 356 4.36e-20 91.3
MS.gene061787.t1 MTR_1g041240 26.706 337 192 11 24 347 201 495 7.63e-20 92.0
MS.gene061787.t1 MTR_1g041240 26.706 337 192 11 24 347 202 496 7.99e-20 91.7
MS.gene061787.t1 MTR_1g041240 26.706 337 192 11 24 347 200 494 8.52e-20 91.7
MS.gene061787.t1 MTR_7g088760 33.129 163 87 6 208 363 754 901 3.11e-17 84.0
MS.gene061787.t1 MTR_7g088760 33.129 163 87 6 208 363 771 918 3.28e-17 84.0
MS.gene061787.t1 MTR_2g087710 32.143 168 90 7 208 366 717 869 5.79e-15 77.0
MS.gene061787.t1 MTR_7g106570 33.333 168 87 7 204 363 738 888 1.36e-14 75.9
MS.gene061787.t1 MTR_1g077980 31.638 177 100 6 194 364 751 912 2.48e-14 75.1
MS.gene061787.t1 MTR_1g077980 28.019 207 135 6 19 218 314 513 4.63e-11 64.7
MS.gene061787.t1 MTR_0279s0020 24.642 349 187 14 24 360 6 290 7.86e-14 72.4
MS.gene061787.t1 MTR_0279s0020 24.363 353 179 14 30 364 3 285 2.56e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061787.t1 AT4G39910 88.618 369 38 3 1 365 1 369 0.0 672
MS.gene061787.t1 AT2G22310 88.219 365 40 2 1 364 1 363 0.0 668
MS.gene061787.t1 AT2G22310 87.273 330 39 2 36 364 4 331 0.0 595
MS.gene061787.t1 AT2G22310 87.423 326 38 2 40 364 3 326 0.0 589
MS.gene061787.t1 AT4G24560 27.299 348 206 10 24 365 543 849 8.03e-34 133
MS.gene061787.t1 AT5G57990 28.280 343 197 12 24 360 108 407 2.12e-33 132
MS.gene061787.t1 AT5G65450 30.380 316 180 9 23 330 348 631 9.41e-32 127
MS.gene061787.t1 AT5G65450 30.380 316 180 9 23 330 329 612 9.66e-32 127
MS.gene061787.t1 AT3G14400 29.607 331 200 5 23 342 24 332 1.46e-31 126
MS.gene061787.t1 AT2G24640 27.966 354 205 12 24 369 5 316 1.44e-30 122
MS.gene061787.t1 AT2G24640 27.966 354 205 12 24 369 175 486 2.79e-30 122
MS.gene061787.t1 AT1G17110 28.116 345 198 10 24 360 439 741 6.08e-30 122
MS.gene061787.t1 AT1G17110 28.116 345 198 10 24 360 439 741 6.08e-30 122
MS.gene061787.t1 AT1G17110 28.116 345 198 10 24 360 443 745 8.15e-30 121
MS.gene061787.t1 AT4G31670 27.044 318 196 9 24 334 169 457 1.57e-29 120
MS.gene061787.t1 AT4G17895 29.261 352 187 11 24 364 177 477 1.57e-26 111
MS.gene061787.t1 AT3G49600 27.515 338 195 8 24 352 107 403 7.57e-26 109
MS.gene061787.t1 AT3G49600 27.515 338 195 8 24 352 107 403 7.57e-26 109
MS.gene061787.t1 AT3G49600 27.515 338 195 8 24 352 107 403 8.03e-26 109
MS.gene061787.t1 AT5G46740 29.513 349 196 11 24 364 164 470 1.20e-23 103
MS.gene061787.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.40e-23 101
MS.gene061787.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.40e-23 101
MS.gene061787.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.40e-23 101
MS.gene061787.t1 AT3G11910 27.114 343 195 12 22 351 196 496 3.97e-20 92.8
MS.gene061787.t1 AT3G11910 27.114 343 195 12 22 351 196 496 3.97e-20 92.8
MS.gene061787.t1 AT3G11910 27.114 343 195 12 22 351 197 497 3.97e-20 92.8
MS.gene061787.t1 AT3G11910 27.114 343 195 12 22 351 197 497 3.97e-20 92.8
MS.gene061787.t1 AT5G06600 27.139 339 192 12 22 347 198 494 1.37e-19 91.3
MS.gene061787.t1 AT5G06600 27.139 339 192 12 22 347 197 493 1.46e-19 90.9
MS.gene061787.t1 AT5G06600 27.139 339 192 12 22 347 198 494 1.58e-19 90.9
MS.gene061787.t1 AT5G10790 24.403 377 203 9 16 339 43 390 2.87e-19 89.0
MS.gene061787.t1 AT5G10790 24.403 377 203 9 16 339 172 519 7.37e-19 88.6
MS.gene061787.t1 AT5G46740 32.323 198 112 6 173 364 80 261 1.85e-16 81.3
MS.gene061787.t1 AT2G40930 31.250 160 88 6 208 360 769 913 4.90e-15 77.0
MS.gene061787.t1 AT2G40930 31.250 160 88 6 208 360 769 913 4.90e-15 77.0
MS.gene061787.t1 AT5G22030 31.325 166 93 6 204 363 719 869 1.55e-14 75.5
MS.gene061787.t1 AT5G22030 31.325 166 93 6 204 363 761 911 1.71e-14 75.5
MS.gene061787.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.28e-14 75.1
MS.gene061787.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.28e-14 75.1
MS.gene061787.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.28e-14 75.1
MS.gene061787.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.28e-14 75.1
MS.gene061787.t1 AT4G10570 33.133 166 90 6 204 363 745 895 3.32e-14 74.7
MS.gene061787.t1 AT1G32850 31.953 169 90 7 203 363 729 880 4.06e-13 71.2

Find 75 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTACCCAAGTAATTAA+AGG 0.260330 4.3:+10172728 None:intergenic
GTAATTAAAGGCTCTTTCTT+AGG 0.269652 4.3:+10172740 None:intergenic
TCTGAAGGTGTTGGTGTCTC+TGG 0.275197 4.3:+10172803 None:intergenic
TCCGCCGTGCAAACGTTCTT+TGG 0.310357 4.3:-10171526 MS.gene061787:CDS
CCAAAGTAACGTTCTCCTTC+AGG 0.310974 4.3:+10176419 None:intergenic
GAATGAACTTGTCGACATTC+TGG 0.315995 4.3:-10172855 MS.gene061787:CDS
GAACAACTGCTGGAGTATTA+TGG 0.316104 4.3:-10175590 MS.gene061787:CDS
AACGTTCTCCTTCAGGGAAT+TGG 0.317047 4.3:+10176426 None:intergenic
CTCCATCTAGTTACTGTTAC+CGG 0.321318 4.3:+10171438 None:intergenic
CAACCTCTGTACAAATCGTT+TGG 0.322213 4.3:+10174772 None:intergenic
TACTTTGGTCTTGAGAATTT+CGG 0.342794 4.3:-10176404 MS.gene061787:CDS
AAAGAAACCTCCTCACATTC+TGG 0.344711 4.3:-10171797 MS.gene061787:CDS
AGAAAGAGCCTTTAATTACT+TGG 0.355430 4.3:-10172736 MS.gene061787:CDS
TATGGAAATAACAAAACCTT+AGG 0.373430 4.3:-10175572 MS.gene061787:CDS
TTGCAAGCACCTTGTCTCAT+TGG 0.375899 4.3:+10172521 None:intergenic
TTCAAGAATGGTCATGCTAA+TGG 0.388068 4.3:-10172764 MS.gene061787:CDS
TCCATTTCGGGAACAACTGC+TGG 0.393629 4.3:-10175600 MS.gene061787:CDS
AACCTCTGTACAAATCGTTT+GGG 0.398526 4.3:+10174773 None:intergenic
CCTTCAGAAAAGGTTGCAAA+TGG 0.403517 4.3:-10172788 MS.gene061787:CDS
TCCAGCAGTTGTTCCCGAAA+TGG 0.416148 4.3:+10175599 None:intergenic
ATGGAAATAACAAAACCTTA+GGG 0.426140 4.3:-10175571 MS.gene061787:CDS
TCTCAAGCGGTTTAAATACA+TGG 0.443043 4.3:-10171767 MS.gene061787:CDS
CCTGAAGGAGAACGTTACTT+TGG 0.445835 4.3:-10176419 MS.gene061787:CDS
CACGTGCTGATGGGTGCTAC+TGG 0.454588 4.3:-10176476 None:intergenic
GAAAGAGCCTTTAATTACTT+GGG 0.460212 4.3:-10172735 MS.gene061787:CDS
CTTTCGTAGCTATATGCATC+AGG 0.467030 4.3:-10174732 MS.gene061787:intron
GTTTAAATACATGGAACAGC+TGG 0.470114 4.3:-10171758 MS.gene061787:CDS
ACCGAGTGCCTTCTCAAGCT+TGG 0.472929 4.3:+10176451 None:intergenic
TATTGAGTATTCTCTATTTG+CGG 0.483092 4.3:-10171659 MS.gene061787:CDS
CAAAGTAACGTTCTCCTTCA+GGG 0.493408 4.3:+10176420 None:intergenic
GACACCAACACCTTCAGAAA+AGG 0.494615 4.3:-10172798 MS.gene061787:CDS
CTGACATAATGCCCATGGTT+GGG 0.500962 4.3:+10171613 None:intergenic
CATTCTGGAGAAAGAGGCTC+AGG 0.502874 4.3:-10172840 MS.gene061787:CDS
TTCTATGAGAGCATTGGGCC+CGG 0.506913 4.3:-10171457 MS.gene061787:CDS
GTTGCAAATGGGTTCAAGAA+TGG 0.518444 4.3:-10172776 MS.gene061787:CDS
TATTACTCAGCTTCAGCTCA+AGG 0.525905 4.3:+10171698 None:intergenic
GTTGGCAGTGGTCCCAACCA+TGG 0.526315 4.3:-10171625 MS.gene061787:CDS
CTTCAGAAAAGGTTGCAAAT+GGG 0.537604 4.3:-10172787 MS.gene061787:CDS
AGTTCGCAGAAGAAGAAAAC+CGG 0.539192 4.3:-10174806 MS.gene061787:CDS
TAACAAAACCTTAGGGGATG+CGG 0.540455 4.3:-10175564 MS.gene061787:CDS
TATTCAACTAACACCGACCA+TGG 0.551966 4.3:-10171490 MS.gene061787:CDS
TTCTGGTCATTCATCTCAAG+CGG 0.553690 4.3:-10171780 MS.gene061787:CDS
TGTCGACATTCTGGAGAAAG+AGG 0.558202 4.3:-10172846 MS.gene061787:CDS
AACGTTCTTTGGATCACCAC+AGG 0.559651 4.3:-10171515 MS.gene061787:CDS
TTGGCAGTGGTCCCAACCAT+GGG 0.561554 4.3:-10171624 MS.gene061787:CDS
ATTACTCAGCTTCAGCTCAA+GGG 0.562003 4.3:+10171699 None:intergenic
TCCATCTAGTTACTGTTACC+GGG 0.563825 4.3:+10171439 None:intergenic
GTAGTTGTTCATGTTGGCAG+TGG 0.568127 4.3:-10171637 MS.gene061787:CDS
TTTGCGGTAGTTGTTCATGT+TGG 0.570867 4.3:-10171643 MS.gene061787:CDS
CTCCCAAACGATTTGTACAG+AGG 0.577523 4.3:-10174775 MS.gene061787:CDS
TCCAAGCTTGAGAAGGCACT+CGG 0.581992 4.3:-10176452 MS.gene061787:CDS
TTACTCAGCTTCAGCTCAAG+GGG 0.593719 4.3:+10171700 None:intergenic
TTGTGAAAAGCCATAACCAC+TGG 0.595274 4.3:-10171588 MS.gene061787:CDS
TACTGGTTCCAAGCTTGAGA+AGG 0.595792 4.3:-10176459 MS.gene061787:CDS
TTTAAATACATGGAACAGCT+GGG 0.600093 4.3:-10171757 MS.gene061787:CDS
AATGTGAAACTGTGACAGCT+AGG 0.603275 4.3:-10172500 MS.gene061787:CDS
CATAGAACAAAATGTACCCA+TGG 0.607092 4.3:+10171473 None:intergenic
CTCGGTGACCAATTCCCTGA+AGG 0.615354 4.3:-10176434 MS.gene061787:CDS
GCTGACATAATGCCCATGGT+TGG 0.618993 4.3:+10171612 None:intergenic
CAAGGCTGACATAATGCCCA+TGG 0.620655 4.3:+10171608 None:intergenic
CTCCGCATTCAACGTCTCAG+TGG 0.635411 4.3:+10172401 None:intergenic
CACTGAGACGTTGAATGCGG+AGG 0.643034 4.3:-10172400 MS.gene061787:CDS
TGGAAATAACAAAACCTTAG+GGG 0.647882 4.3:-10175570 MS.gene061787:CDS
ATTCAACTAACACCGACCAT+GGG 0.648378 4.3:-10171489 MS.gene061787:CDS
GTGTTAGTTGAATATTCCTG+TGG 0.649469 4.3:+10171499 None:intergenic
TCGTTTGGGAGCAATGACAC+CGG 0.652677 4.3:+10174787 None:intergenic
TTCCACTGAGACGTTGAATG+CGG 0.653862 4.3:-10172403 MS.gene061787:CDS
ATGTGAAACTGTGACAGCTA+GGG 0.662477 4.3:-10172499 MS.gene061787:CDS
TGATCCAAAGAACGTTTGCA+CGG 0.665690 4.3:+10171522 None:intergenic
GAACAAAATGTACCCATGGT+CGG 0.668984 4.3:+10171477 None:intergenic
TGAATGACCAGAATGTGAGG+AGG 0.681890 4.3:+10171790 None:intergenic
GGTAAGACAACTTCTTGTAG+CGG 0.683615 4.3:+10171734 None:intergenic
AGATGAATGACCAGAATGTG+AGG 0.695994 4.3:+10171787 None:intergenic
GAATACTCACCAATGAGACA+AGG 0.708354 4.3:-10172530 MS.gene061787:CDS
TCCAAAGAACGTTTGCACGG+CGG 0.730946 4.3:+10171525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGACAAAAAAAAAT+TGG + chr4.3:10175232-10175251 None:intergenic 10.0%
!! AAATAAAAAATAAGAAAATC+TGG + chr4.3:10172723-10172742 None:intergenic 10.0%
!! ATATGTTATTAAAGAAAATA+TGG + chr4.3:10172696-10172715 None:intergenic 10.0%
!! ATTAACTATTATTATATATC+CGG - chr4.3:10174520-10174539 MS.gene061787:intron 10.0%
!! TAATACTTAAAATCATAATT+AGG + chr4.3:10172187-10172206 None:intergenic 10.0%
!! AAATTCAGAAAAGAAAAAAA+TGG + chr4.3:10171677-10171696 None:intergenic 15.0%
!! ATATAAATAAGACATTAGTT+TGG - chr4.3:10173307-10173326 MS.gene061787:intron 15.0%
!! GAAAAGAAAAAAAAACTAAT+TGG + chr4.3:10174656-10174675 None:intergenic 15.0%
!! TAATTGTTGAATAATCTATA+AGG - chr4.3:10171731-10171750 MS.gene061787:CDS 15.0%
!! TTAATAATGTAAAGTGATAA+GGG + chr4.3:10174585-10174604 None:intergenic 15.0%
!! TTAATTCACAAAAACATTTA+AGG - chr4.3:10173638-10173657 MS.gene061787:intron 15.0%
!! TTAGATTTATATCTATATTG+TGG - chr4.3:10175327-10175346 MS.gene061787:intron 15.0%
!!! TGTTAATTTTAATGTATCAT+TGG - chr4.3:10174929-10174948 MS.gene061787:intron 15.0%
!!! TTGAATATCATGTATATTTT+TGG - chr4.3:10175859-10175878 MS.gene061787:intron 15.0%
!!! TTTTTAACTTAAGCATTTAA+AGG + chr4.3:10173919-10173938 None:intergenic 15.0%
!! AAAAAATAAGAAAATCTGGT+AGG + chr4.3:10172719-10172738 None:intergenic 20.0%
!! ATAAACATTTGCAATATCAT+TGG - chr4.3:10174190-10174209 MS.gene061787:intron 20.0%
!! ATAAATTGTGAACTTTGTAA+TGG - chr4.3:10175281-10175300 MS.gene061787:intron 20.0%
!! ATGAAAAAGTAGTTATAAGT+GGG - chr4.3:10174419-10174438 MS.gene061787:intron 20.0%
!! CCTGAAAAATTATTTATAAG+CGG - chr4.3:10173720-10173739 MS.gene061787:intron 20.0%
!! CTGAAAAATTATTTATAAGC+GGG - chr4.3:10173721-10173740 MS.gene061787:intron 20.0%
!! CTTAATAATGTAAAGTGATA+AGG + chr4.3:10174586-10174605 None:intergenic 20.0%
!! GAAATAAATATGTTGAATTC+AGG + chr4.3:10173071-10173090 None:intergenic 20.0%
!! TAAAAACTAGACAAAATATG+AGG + chr4.3:10174965-10174984 None:intergenic 20.0%
!! TAAGTATTAAGTTTGAAGAT+GGG - chr4.3:10172198-10172217 MS.gene061787:intron 20.0%
!! TATTTCATCATAGAATGAAA+AGG + chr4.3:10174683-10174702 None:intergenic 20.0%
!! TTAAGTATTAAGTTTGAAGA+TGG - chr4.3:10172197-10172216 MS.gene061787:intron 20.0%
!!! AAACTCTTCAAAAATTTGTT+TGG + chr4.3:10171712-10171731 None:intergenic 20.0%
!!! ATTTTTGTTATTTACCTGTT+TGG - chr4.3:10171754-10171773 MS.gene061787:CDS 20.0%
!!! CGCTTATAAATAATTTTTCA+GGG + chr4.3:10173722-10173741 None:intergenic 20.0%
!!! GCTTATAAATAATTTTTCAG+GGG + chr4.3:10173721-10173740 None:intergenic 20.0%
!!! GTTTGTTTGTTATATTTTTG+TGG - chr4.3:10172220-10172239 MS.gene061787:intron 20.0%
!!! TCATATCTAAAGTCTTAATT+TGG + chr4.3:10174495-10174514 None:intergenic 20.0%
!!! TTCAACATATTTATTTCTGT+TGG - chr4.3:10173074-10173093 MS.gene061787:intron 20.0%
! AAAAATTATTTATAAGCGGG+AGG - chr4.3:10173724-10173743 MS.gene061787:intron 25.0%
! AAATGTTTATAATGACACAG+TGG + chr4.3:10174180-10174199 None:intergenic 25.0%
! AACACAAATTTATAACCTGA+AGG - chr4.3:10174352-10174371 MS.gene061787:intron 25.0%
! AACTATTATTATATATCCGG+TGG - chr4.3:10174523-10174542 MS.gene061787:intron 25.0%
! AATAATTCTGTAACTGATGT+TGG - chr4.3:10174699-10174718 MS.gene061787:intron 25.0%
! ACACAAACAATAACAGAAAA+AGG + chr4.3:10172746-10172765 None:intergenic 25.0%
! ACACAAATTTATAACCTGAA+GGG - chr4.3:10174353-10174372 MS.gene061787:intron 25.0%
! ACAGAATAAAAAAGTAACAC+TGG + chr4.3:10173559-10173578 None:intergenic 25.0%
! AGAGATGCTATTATCTATAT+TGG - chr4.3:10173467-10173486 MS.gene061787:intron 25.0%
! AGAGGGAAATAAAATAAATG+TGG - chr4.3:10175814-10175833 MS.gene061787:intron 25.0%
! ATAATTCTGTAACTGATGTT+GGG - chr4.3:10174700-10174719 MS.gene061787:intron 25.0%
! ATGGAAAAACAAACATGTTA+CGG + chr4.3:10175919-10175938 None:intergenic 25.0%
! ATGGAAATAACAAAACCTTA+GGG - chr4.3:10172340-10172359 MS.gene061787:intron 25.0%
! CAAGGAAATGTAAATAAACA+TGG + chr4.3:10173409-10173428 None:intergenic 25.0%
! CAGTTAAAAGTAGAAAACAA+TGG + chr4.3:10175793-10175812 None:intergenic 25.0%
! CATGAAAAAGTAGTTATAAG+TGG - chr4.3:10174418-10174437 MS.gene061787:intron 25.0%
! GAACTTATTCTTAACACTTA+TGG + chr4.3:10173216-10173235 None:intergenic 25.0%
! TAAAAAGTTCAAGAATTCGT+GGG + chr4.3:10175034-10175053 None:intergenic 25.0%
! TAATACAACAATGTTACTGT+CGG - chr4.3:10174987-10175006 MS.gene061787:intron 25.0%
! TAGAACTTACATTCAATTCT+TGG + chr4.3:10174138-10174157 None:intergenic 25.0%
! TATGGAAATAACAAAACCTT+AGG - chr4.3:10172339-10172358 MS.gene061787:intron 25.0%
! TATTGAGTATTCTCTATTTG+CGG - chr4.3:10176252-10176271 MS.gene061787:intron 25.0%
! TCAAATAATCAAATCCAAAC+AGG + chr4.3:10171771-10171790 None:intergenic 25.0%
! TGAACAGATATCTGAAAATT+TGG + chr4.3:10175728-10175747 None:intergenic 25.0%
! TTGCAAATCACAAAAAACAA+CGG + chr4.3:10172100-10172119 None:intergenic 25.0%
!! ACAAGTTGAGAATAAAAGAT+AGG - chr4.3:10172797-10172816 MS.gene061787:CDS 25.0%
!! AGATATAGTTGATACTTGAT+AGG + chr4.3:10173011-10173030 None:intergenic 25.0%
!! AGGTATATGCTTTTATATTG+TGG - chr4.3:10175560-10175579 MS.gene061787:CDS 25.0%
!! ATAAGACATTAGTTTGGATA+TGG - chr4.3:10173313-10173332 MS.gene061787:intron 25.0%
!! ATCTAAAGTCTTAATTTGGT+CGG + chr4.3:10174491-10174510 None:intergenic 25.0%
!! CAAGTTGAGAATAAAAGATA+GGG - chr4.3:10172798-10172817 MS.gene061787:CDS 25.0%
!! CCGCTTATAAATAATTTTTC+AGG + chr4.3:10173723-10173742 None:intergenic 25.0%
!! TAAGACATTAGTTTGGATAT+GGG - chr4.3:10173314-10173333 MS.gene061787:intron 25.0%
!! TATACTTTTGTGTTCCATTT+CGG - chr4.3:10172298-10172317 MS.gene061787:intron 25.0%
!! TCAAATATGAAAAAGCATAG+AGG + chr4.3:10172460-10172479 None:intergenic 25.0%
!! TTTGCTTGTTGAAAATGAAA+AGG + chr4.3:10175896-10175915 None:intergenic 25.0%
!!! ATATTTTTGTGGAGATTTCT+GGG - chr4.3:10172231-10172250 MS.gene061787:intron 25.0%
!!! ATGTTTGTTTTTCCATTGAT+TGG - chr4.3:10175923-10175942 MS.gene061787:intron 25.0%
!!! ATTTTAGTAGTTTCCTGTAA+AGG - chr4.3:10175758-10175777 MS.gene061787:intron 25.0%
!!! CATTGTTTTCTACTTTTAAC+TGG - chr4.3:10175791-10175810 MS.gene061787:intron 25.0%
!!! TATAGCGATTAGTCTAAATT+CGG + chr4.3:10172033-10172052 None:intergenic 25.0%
!!! TATATTTTTGTGGAGATTTC+TGG - chr4.3:10172230-10172249 MS.gene061787:intron 25.0%
!!! TGGTTTTAAAACCAAAACTA+AGG + chr4.3:10172676-10172695 None:intergenic 25.0%
!!! TGTTACTTTTTTATTCTGTC+AGG - chr4.3:10173560-10173579 MS.gene061787:intron 25.0%
!!! TTATAAATTTGTGTTGACTC+TGG + chr4.3:10174347-10174366 None:intergenic 25.0%
!!! TTATACAGATGATTTGTTTC+AGG + chr4.3:10172986-10173005 None:intergenic 25.0%
!!! TTGTTTTTCTCAATTGCAAA+GGG - chr4.3:10174039-10174058 MS.gene061787:intron 25.0%
!!! TTTTGTTGTTGCAACAAATT+TGG - chr4.3:10175251-10175270 MS.gene061787:intron 25.0%
AAATCATAATTAGGCCTGTT+TGG + chr4.3:10172178-10172197 None:intergenic 30.0%
ACAATAGAGTTTACTTTGTG+AGG - chr4.3:10172952-10172971 MS.gene061787:intron 30.0%
AGAAAGAGCCTTTAATTACT+TGG - chr4.3:10175175-10175194 MS.gene061787:intron 30.0%
AGATAATAGCATCTCTAACT+AGG + chr4.3:10173463-10173482 None:intergenic 30.0%
ATTAAGCCTGCTAATAGATT+TGG - chr4.3:10174600-10174619 MS.gene061787:intron 30.0%
ATTTAGACTAATCGCTATAG+TGG - chr4.3:10172034-10172053 MS.gene061787:intron 30.0%
CAAAAAAAAATTGGCAAAGC+AGG + chr4.3:10175223-10175242 None:intergenic 30.0%
CAAAAAATAACCAGTGGTTA+TGG + chr4.3:10176336-10176355 None:intergenic 30.0%
CACAAAGTAAACTCTATTGT+TGG + chr4.3:10172952-10172971 None:intergenic 30.0%
CAGGTAATCAATTTGTAGTT+TGG - chr4.3:10172408-10172427 MS.gene061787:CDS 30.0%
GAAAGAGCCTTTAATTACTT+GGG - chr4.3:10175176-10175195 MS.gene061787:intron 30.0%
GAAATACGATAATGCAGAAA+AGG - chr4.3:10174107-10174126 MS.gene061787:intron 30.0%
GATATTTATTTGTGATGCAG+TGG - chr4.3:10174006-10174025 MS.gene061787:intron 30.0%
GTAAAAAGTTCAAGAATTCG+TGG + chr4.3:10175035-10175054 None:intergenic 30.0%
GTAATTAAAGGCTCTTTCTT+AGG + chr4.3:10175174-10175193 None:intergenic 30.0%
TAATGTAAAGTGATAAGGGA+TGG + chr4.3:10174581-10174600 None:intergenic 30.0%
TATGCTACAGTGAAAATTCA+TGG + chr4.3:10174782-10174801 None:intergenic 30.0%
TGAATAACAATTCGATGTAC+AGG + chr4.3:10173238-10173257 None:intergenic 30.0%
TGCATTCTCTTCACTAATTT+CGG - chr4.3:10172512-10172531 MS.gene061787:CDS 30.0%
TGGAAATAACAAAACCTTAG+GGG - chr4.3:10172341-10172360 MS.gene061787:intron 30.0%
TGTTATTGTTTGTGTGTTGA+AGG - chr4.3:10172751-10172770 MS.gene061787:CDS 30.0%
TTGTGTACCCAAGTAATTAA+AGG + chr4.3:10175186-10175205 None:intergenic 30.0%
TTTAAATACATGGAACAGCT+GGG - chr4.3:10176154-10176173 MS.gene061787:intron 30.0%
! AACTGTTTTGCTCAATATCA+AGG + chr4.3:10175460-10175479 None:intergenic 30.0%
! ATACTTTTGTGTTCCATTTC+GGG - chr4.3:10172299-10172318 MS.gene061787:intron 30.0%
! ATTAAGTTGTTCTTCCAAAC+AGG - chr4.3:10172161-10172180 MS.gene061787:intron 30.0%
! CACTACGATTTAGAATGAAT+CGG + chr4.3:10171601-10171620 None:intergenic 30.0%
! TGGAAATTTTGTGCATTACA+TGG - chr4.3:10172428-10172447 MS.gene061787:CDS 30.0%
! TTATTGTAACAGCGTTTTAC+AGG - chr4.3:10171539-10171558 MS.gene061787:CDS 30.0%
!! AAATTTGTGTTGACTCTTGT+GGG + chr4.3:10174343-10174362 None:intergenic 30.0%
!! ACTTCATTTGTTTTCTGAAC+GGG - chr4.3:10175947-10175966 MS.gene061787:intron 30.0%
!! ATTTTGTTCTATGAGAGCAT+TGG - chr4.3:10176448-10176467 MS.gene061787:CDS 30.0%
!! CACTTCATTTGTTTTCTGAA+CGG - chr4.3:10175946-10175965 MS.gene061787:intron 30.0%
!! CTTGTTTTTCTCAATTGCAA+AGG - chr4.3:10174038-10174057 MS.gene061787:intron 30.0%
!! GTTTTTGCTATCCTTAGTTT+TGG - chr4.3:10172662-10172681 MS.gene061787:intron 30.0%
!! TAAATTTGTGTTGACTCTTG+TGG + chr4.3:10174344-10174363 None:intergenic 30.0%
!! TACTTTGGTCTTGAGAATTT+CGG - chr4.3:10171507-10171526 MS.gene061787:CDS 30.0%
!! TGAAAGCAAATTCTAAGATG+AGG - chr4.3:10173893-10173912 MS.gene061787:intron 30.0%
!! TTTCTACTTTTAACTGGAGA+GGG - chr4.3:10175797-10175816 MS.gene061787:intron 30.0%
!! TTTTCTACTTTTAACTGGAG+AGG - chr4.3:10175796-10175815 MS.gene061787:intron 30.0%
!!! ACTTTTTTATTCTGTCAGGT+TGG - chr4.3:10173564-10173583 MS.gene061787:intron 30.0%
!!! TTTTGTTCTATGAGAGCATT+GGG - chr4.3:10176449-10176468 MS.gene061787:CDS 30.0%
AAAAGCTTGTAACAATTCCG+AGG + chr4.3:10173617-10173636 None:intergenic 35.0%
AAAGCTTGTAACAATTCCGA+GGG + chr4.3:10173616-10173635 None:intergenic 35.0%
AACCTCTGTACAAATCGTTT+GGG + chr4.3:10173141-10173160 None:intergenic 35.0%
AAGTTCTACCTGCAAAACAA+AGG - chr4.3:10174150-10174169 MS.gene061787:intron 35.0%
ACATTCTTCACCTTACAAGT+TGG - chr4.3:10174444-10174463 MS.gene061787:intron 35.0%
ATAATAGGGTTGCCATATAG+TGG - chr4.3:10171977-10171996 MS.gene061787:intron 35.0%
ATATATGGAAATCCACCACT+TGG - chr4.3:10174221-10174240 MS.gene061787:intron 35.0%
ATGCTACTGCTTGTTTAACA+TGG - chr4.3:10175670-10175689 MS.gene061787:intron 35.0%
ATGGCGTAAAAAACCTTTAC+AGG + chr4.3:10175774-10175793 None:intergenic 35.0%
ATTCTCTTCACTAATTTCGG+CGG - chr4.3:10172515-10172534 MS.gene061787:CDS 35.0%
ATTTACCAATCTAGTGACCA+AGG - chr4.3:10176038-10176057 MS.gene061787:intron 35.0%
CACCAATCCAAAATTTGAGA+TGG - chr4.3:10173787-10173806 MS.gene061787:intron 35.0%
CATAGAACAAAATGTACCCA+TGG + chr4.3:10176441-10176460 None:intergenic 35.0%
CCATACAAAACCAACTTGTA+AGG + chr4.3:10174457-10174476 None:intergenic 35.0%
CGTCATCAAAAAATAACCAG+TGG + chr4.3:10176342-10176361 None:intergenic 35.0%
CTATATTGGATGTTTCCAGA+TGG - chr4.3:10173481-10173500 MS.gene061787:intron 35.0%
CTTCAGAAAAGGTTGCAAAT+GGG - chr4.3:10175124-10175143 MS.gene061787:intron 35.0%
CTTCTTCCTCTTCTTTCATT+TGG - chr4.3:10172596-10172615 MS.gene061787:intron 35.0%
CTTGCATCTTTGCATAATCA+TGG + chr4.3:10173375-10173394 None:intergenic 35.0%
GATTATGCAAAGATGCAAGT+AGG - chr4.3:10173376-10173395 MS.gene061787:intron 35.0%
GCATATCACTGTTATACTGA+TGG - chr4.3:10174625-10174644 MS.gene061787:intron 35.0%
GGAAAAGATTATGATTCCAC+CGG + chr4.3:10174542-10174561 None:intergenic 35.0%
GTCTCACATTTGATGTGATA+TGG - chr4.3:10173695-10173714 MS.gene061787:intron 35.0%
GTGTTAGTTGAATATTCCTG+TGG + chr4.3:10176415-10176434 None:intergenic 35.0%
GTTTAAATACATGGAACAGC+TGG - chr4.3:10176153-10176172 MS.gene061787:intron 35.0%
TAAATGGGCATGAAAAACAG+AGG + chr4.3:10176023-10176042 None:intergenic 35.0%
TCATTGGACAGCACAATATA+TGG - chr4.3:10174206-10174225 MS.gene061787:intron 35.0%
TCTCAAGCGGTTTAAATACA+TGG - chr4.3:10176144-10176163 MS.gene061787:intron 35.0%
TGAAGACCAAATGAAAGAAG+AGG + chr4.3:10172605-10172624 None:intergenic 35.0%
TGGTCACTAGATTGGTAAAT+GGG + chr4.3:10176038-10176057 None:intergenic 35.0%
TGTTGTTGCAACAAATTTGG+AGG - chr4.3:10175254-10175273 MS.gene061787:intron 35.0%
TTCAAGAATGGTCATGCTAA+TGG - chr4.3:10175147-10175166 MS.gene061787:intron 35.0%
TTCCAGATGCTAGATAATCA+TGG + chr4.3:10172876-10172895 None:intergenic 35.0%
TTGGGTACACAAAAACTTTC+AGG - chr4.3:10175194-10175213 MS.gene061787:intron 35.0%
TTGGTCACTAGATTGGTAAA+TGG + chr4.3:10176039-10176058 None:intergenic 35.0%
TTTCAGCTTCAACATGTGTT+GGG + chr4.3:10173878-10173897 None:intergenic 35.0%
! ACAAATGAAGTGCCAATCAA+TGG + chr4.3:10175938-10175957 None:intergenic 35.0%
! CACCATCTCAAATTTTGGAT+TGG + chr4.3:10173792-10173811 None:intergenic 35.0%
! CGATTTAGAATGAATCGGAT+TGG + chr4.3:10171596-10171615 None:intergenic 35.0%
! TCTGACACCATCTCAAATTT+TGG + chr4.3:10173797-10173816 None:intergenic 35.0%
!! AAATTTGTGTTGACTCTGGT+GGG + chr4.3:10174394-10174413 None:intergenic 35.0%
!! ACCTGAAGGGTATTTATAAG+TGG - chr4.3:10174366-10174385 MS.gene061787:intron 35.0%
!! ATTTCGGTTGGTAGATCATT+AGG - chr4.3:10173529-10173548 MS.gene061787:intron 35.0%
!! CCTGAAGGGTATTTATAAGT+GGG - chr4.3:10174367-10174386 MS.gene061787:intron 35.0%
!! TAAATTTGTGTTGACTCTGG+TGG + chr4.3:10174395-10174414 None:intergenic 35.0%
!!! ACCTTACAAGCTAGTTTTGT+AGG - chr4.3:10173755-10173774 MS.gene061787:intron 35.0%
!!! CCTTACAAGCTAGTTTTGTA+GGG - chr4.3:10173756-10173775 MS.gene061787:intron 35.0%
!!! CCTTACAAGTTGGTTTTGTA+TGG - chr4.3:10174454-10174473 MS.gene061787:intron 35.0%
!!! TGGTTTTGTATGGTTGAGTT+AGG - chr4.3:10174464-10174483 MS.gene061787:intron 35.0%
AAAACCGCATGCCTTGAATT+TGG + chr4.3:10173591-10173610 None:intergenic 40.0%
AAAATTACTACCCGCAGGAT+TGG + chr4.3:10174067-10174086 None:intergenic 40.0%
AAAGAAACCTCCTCACATTC+TGG - chr4.3:10176114-10176133 MS.gene061787:intron 40.0%
AAAGCTGAAAGTTCGAAGCA+AGG + chr4.3:10173427-10173446 None:intergenic 40.0%
AAGTCCTTGTGAGACTGTTT+GGG - chr4.3:10171807-10171826 MS.gene061787:CDS 40.0%
AATGTGAAACTGTGACAGCT+AGG - chr4.3:10175411-10175430 MS.gene061787:intron 40.0%
ACGGTCTAGATGTTCATTCA+TGG - chr4.3:10174284-10174303 MS.gene061787:intron 40.0%
AGAAGAGGAAGAAGAATGCA+AGG + chr4.3:10172590-10172609 None:intergenic 40.0%
AGATGAATGACCAGAATGTG+AGG + chr4.3:10176127-10176146 None:intergenic 40.0%
AGTTCGCAGAAGAAGAAAAC+CGG - chr4.3:10173105-10173124 MS.gene061787:intron 40.0%
ATGCAGCCAAATCTATTAGC+AGG + chr4.3:10174609-10174628 None:intergenic 40.0%
ATGTGAAACTGTGACAGCTA+GGG - chr4.3:10175412-10175431 MS.gene061787:intron 40.0%
ATTACTCAGCTTCAGCTCAA+GGG + chr4.3:10176215-10176234 None:intergenic 40.0%
ATTCAACTAACACCGACCAT+GGG - chr4.3:10176422-10176441 MS.gene061787:CDS 40.0%
CAAAGTAACGTTCTCCTTCA+GGG + chr4.3:10171494-10171513 None:intergenic 40.0%
CAACCTCTGTACAAATCGTT+TGG + chr4.3:10173142-10173161 None:intergenic 40.0%
CACCATGATTATCTAGCATC+TGG - chr4.3:10172871-10172890 MS.gene061787:CDS 40.0%
CCAAAAGAAAGTTTGCACCT+TGG + chr4.3:10176058-10176077 None:intergenic 40.0%
CCCACTTATAAATACCCTTC+AGG + chr4.3:10174370-10174389 None:intergenic 40.0%
CCTTCAGAAAAGGTTGCAAA+TGG - chr4.3:10175123-10175142 MS.gene061787:intron 40.0%
CGGTCTAGATGTTCATTCAT+GGG - chr4.3:10174285-10174304 MS.gene061787:intron 40.0%
CTGACAACAAGTATTTCGGT+TGG - chr4.3:10173517-10173536 MS.gene061787:intron 40.0%
CTTTCAGCTTCAACATGTGT+TGG + chr4.3:10173879-10173898 None:intergenic 40.0%
CTTTCGTAGCTATATGCATC+AGG - chr4.3:10173179-10173198 MS.gene061787:intron 40.0%
GAACAAAATGTACCCATGGT+CGG + chr4.3:10176437-10176456 None:intergenic 40.0%
GAATACTCACCAATGAGACA+AGG - chr4.3:10175381-10175400 MS.gene061787:intron 40.0%
GAATGAACTTGTCGACATTC+TGG - chr4.3:10175056-10175075 MS.gene061787:intron 40.0%
GAGCCTGACAACAAGTATTT+CGG - chr4.3:10173513-10173532 MS.gene061787:intron 40.0%
GGTAAGACAACTTCTTGTAG+CGG + chr4.3:10176180-10176199 None:intergenic 40.0%
GTGTTGAAGGAGAATTTGTC+AGG - chr4.3:10172764-10172783 MS.gene061787:CDS 40.0%
TAACAAAACCTTAGGGGATG+CGG - chr4.3:10172347-10172366 MS.gene061787:intron 40.0%
TACTTGGTTTCTCGATTGGT+TGG - chr4.3:10175593-10175612 MS.gene061787:CDS 40.0%
TATTACTCAGCTTCAGCTCA+AGG + chr4.3:10176216-10176235 None:intergenic 40.0%
TATTCAACTAACACCGACCA+TGG - chr4.3:10176421-10176440 MS.gene061787:CDS 40.0%
TGATCCAAAGAACGTTTGCA+CGG + chr4.3:10176392-10176411 None:intergenic 40.0%
TTCTGGTCATTCATCTCAAG+CGG - chr4.3:10176131-10176150 MS.gene061787:intron 40.0%
TTGAATCCACTCAGGTCAAT+TGG - chr4.3:10173847-10173866 MS.gene061787:intron 40.0%
TTGTGAAAAGCCATAACCAC+TGG - chr4.3:10176323-10176342 MS.gene061787:intron 40.0%
TTTATCTGAATGCCTCACAG+TGG - chr4.3:10172640-10172659 MS.gene061787:intron 40.0%
TTTGCGGTAGTTGTTCATGT+TGG - chr4.3:10176268-10176287 MS.gene061787:intron 40.0%
! AAAAGTATAGTGCCTGCAGA+AGG + chr4.3:10172287-10172306 None:intergenic 40.0%
! ACTTGGTTTCTCGATTGGTT+GGG - chr4.3:10175594-10175613 MS.gene061787:CDS 40.0%
! AGTGGTTATGGCTTTTCACA+AGG + chr4.3:10176324-10176343 None:intergenic 40.0%
! ATCCTGCGGGTAGTAATTTT+TGG - chr4.3:10174067-10174086 MS.gene061787:intron 40.0%
! CCAAGGTGCAAACTTTCTTT+TGG - chr4.3:10176055-10176074 MS.gene061787:intron 40.0%
! CCATTTGCAACCTTTTCTGA+AGG + chr4.3:10175126-10175145 None:intergenic 40.0%
! CCCTACAAAACTAGCTTGTA+AGG + chr4.3:10173759-10173778 None:intergenic 40.0%
! CTGTTACTTGGTTTCTCGAT+TGG - chr4.3:10175589-10175608 MS.gene061787:CDS 40.0%
! GAACAACTGCTGGAGTATTA+TGG - chr4.3:10172321-10172340 MS.gene061787:intron 40.0%
! GTTGCAAATGGGTTCAAGAA+TGG - chr4.3:10175135-10175154 MS.gene061787:intron 40.0%
! GTTTTCTGAACGGGATTTCT+TGG - chr4.3:10175956-10175975 MS.gene061787:intron 40.0%
! TACTGTCGGTCTTCTCTTTT+CGG - chr4.3:10175001-10175020 MS.gene061787:intron 40.0%
! TCCTGCGGGTAGTAATTTTT+GGG - chr4.3:10174068-10174087 MS.gene061787:intron 40.0%
! TTTTCCCAAACAGTCTCACA+AGG + chr4.3:10171814-10171833 None:intergenic 40.0%
!! ACCATTTTGAGTCATGTGCT+TGG - chr4.3:10175640-10175659 MS.gene061787:intron 40.0%
!! CAACCGAAATACTTGTTGTC+AGG + chr4.3:10173519-10173538 None:intergenic 40.0%
!! CTCATTTTTCTACCTTCTGC+AGG - chr4.3:10172272-10172291 MS.gene061787:intron 40.0%
!!! CTTAGCTGACTTGTTTTCAC+AGG - chr4.3:10172389-10172408 MS.gene061787:CDS 40.0%
AACGTTCTCCTTCAGGGAAT+TGG + chr4.3:10171488-10171507 None:intergenic 45.0%
AACGTTCTTTGGATCACCAC+AGG - chr4.3:10176396-10176415 MS.gene061787:CDS 45.0%
AGGAAGAAGAATGCAAGGCT+GGG + chr4.3:10172585-10172604 None:intergenic 45.0%
AGGCTCACAACATTACCATC+TGG + chr4.3:10173499-10173518 None:intergenic 45.0%
ATGGGTTTGTATGCAGCGTT+TGG - chr4.3:10173332-10173351 MS.gene061787:intron 45.0%
ATTCAAAACAGGTGGCTCGA+CGG + chr4.3:10173833-10173852 None:intergenic 45.0%
CAAGTCCTTGTGAGACTGTT+TGG - chr4.3:10171806-10171825 MS.gene061787:CDS 45.0%
CACTTGGACTAAGTATGCCT+CGG - chr4.3:10174237-10174256 MS.gene061787:intron 45.0%
CCAAAGTAACGTTCTCCTTC+AGG + chr4.3:10171495-10171514 None:intergenic 45.0%
CCTGAAGGAGAACGTTACTT+TGG - chr4.3:10171492-10171511 MS.gene061787:CDS 45.0%
CTCCCAAACGATTTGTACAG+AGG - chr4.3:10173136-10173155 MS.gene061787:intron 45.0%
CTGACATAATGCCCATGGTT+GGG + chr4.3:10176301-10176320 None:intergenic 45.0%
GACACCAACACCTTCAGAAA+AGG - chr4.3:10175113-10175132 MS.gene061787:intron 45.0%
GATGGTTGTGAGTTGTGACA+TGG + chr4.3:10174563-10174582 None:intergenic 45.0%
GCCAAGCACATGACTCAAAA+TGG + chr4.3:10175644-10175663 None:intergenic 45.0%
GCTCAAGGGGAAAAACAACT+CGG + chr4.3:10176201-10176220 None:intergenic 45.0%
GGATAGCAAAAACCACTGTG+AGG + chr4.3:10172655-10172674 None:intergenic 45.0%
GTAGTTGTTCATGTTGGCAG+TGG - chr4.3:10176274-10176293 MS.gene061787:intron 45.0%
GTTGCAAGTTGTTGTGACCA+GGG - chr4.3:10175359-10175378 MS.gene061787:intron 45.0%
TCTCATTGGTGAGTATTCCC+TGG + chr4.3:10175379-10175398 None:intergenic 45.0%
TGAATGACCAGAATGTGAGG+AGG + chr4.3:10176124-10176143 None:intergenic 45.0%
TGGACCAAATTCAAGGCATG+CGG - chr4.3:10173584-10173603 MS.gene061787:intron 45.0%
TGTTGCAAGTTGTTGTGACC+AGG - chr4.3:10175358-10175377 MS.gene061787:intron 45.0%
TTACTCAGCTTCAGCTCAAG+GGG + chr4.3:10176214-10176233 None:intergenic 45.0%
TTCCACTGAGACGTTGAATG+CGG - chr4.3:10175508-10175527 MS.gene061787:intron 45.0%
TTGCAAGCACCTTGTCTCAT+TGG + chr4.3:10175393-10175412 None:intergenic 45.0%
TTGCACCTTGGTCACTAGAT+TGG + chr4.3:10176046-10176065 None:intergenic 45.0%
TTGCCATATAGTGGCCATAG+CGG - chr4.3:10171986-10172005 MS.gene061787:intron 45.0%
TTGTGGCATCAGCTGTTACT+TGG - chr4.3:10175577-10175596 MS.gene061787:CDS 45.0%
! ACATCTAGACCGTAACTTGC+AGG + chr4.3:10174277-10174296 None:intergenic 45.0%
! ATAGTGTTACAGTGCCGCTA+TGG + chr4.3:10172003-10172022 None:intergenic 45.0%
! ATTTTCTTCCGCATCCCCTA+AGG + chr4.3:10172358-10172377 None:intergenic 45.0%
! CTGAGTGGATTCAAAACAGG+TGG + chr4.3:10173841-10173860 None:intergenic 45.0%
! GACCTGAGTGGATTCAAAAC+AGG + chr4.3:10173844-10173863 None:intergenic 45.0%
! TGTCGACATTCTGGAGAAAG+AGG - chr4.3:10175065-10175084 MS.gene061787:intron 45.0%
!! CACCTGTTTTGAATCCACTC+AGG - chr4.3:10173839-10173858 MS.gene061787:intron 45.0%
!! GCAACCTTTTCTGAAGGTGT+TGG + chr4.3:10175120-10175139 None:intergenic 45.0%
!! GTCAGGTTGGACCAAATTCA+AGG - chr4.3:10173577-10173596 MS.gene061787:intron 45.0%
!! TACTGGTTCCAAGCTTGAGA+AGG - chr4.3:10171452-10171471 MS.gene061787:CDS 45.0%
!! TTTTCTGTGACAAGTGCTGC+AGG - chr4.3:10175540-10175559 MS.gene061787:CDS 45.0%
!!! GTGGTTTGCCTTTGTTTTGC+AGG + chr4.3:10174161-10174180 None:intergenic 45.0%
!!! ATAATTATTTTTAGATAATA+GGG - chr4.3:10171963-10171982 MS.gene061787:intron 5.0%
!!! TATAATTATTTTTAGATAAT+AGG - chr4.3:10171962-10171981 MS.gene061787:intron 5.0%
AAGAAGAATGCAAGGCTGGG+AGG + chr4.3:10172582-10172601 None:intergenic 50.0%
CAAGGCTGACATAATGCCCA+TGG + chr4.3:10176306-10176325 None:intergenic 50.0%
CGAGGCATACTTAGTCCAAG+TGG + chr4.3:10174239-10174258 None:intergenic 50.0%
GAGGAAGAAGAATGCAAGGC+TGG + chr4.3:10172586-10172605 None:intergenic 50.0%
GATGTTCATTCATGGGCGTG+AGG - chr4.3:10174292-10174311 MS.gene061787:intron 50.0%
GCCCAAAAATTACTACCCGC+AGG + chr4.3:10174072-10174091 None:intergenic 50.0%
GCTGACATAATGCCCATGGT+TGG + chr4.3:10176302-10176321 None:intergenic 50.0%
GCTGATCCAATTGACCTGAG+TGG + chr4.3:10173856-10173875 None:intergenic 50.0%
GGCATACTTAGTCCAAGTGG+TGG + chr4.3:10174236-10174255 None:intergenic 50.0%
GGCGGCTATGATTCATGCTT+TGG - chr4.3:10172533-10172552 MS.gene061787:CDS 50.0%
TAAGTATGCCTCGGTGGCTT+GGG - chr4.3:10174246-10174265 MS.gene061787:intron 50.0%
TCCAAAGAACGTTTGCACGG+CGG + chr4.3:10176389-10176408 None:intergenic 50.0%
TCCAGCAGTTGTTCCCGAAA+TGG + chr4.3:10172315-10172334 None:intergenic 50.0%
TCCATTTCGGGAACAACTGC+TGG - chr4.3:10172311-10172330 MS.gene061787:intron 50.0%
TCGTTTGGGAGCAATGACAC+CGG + chr4.3:10173127-10173146 None:intergenic 50.0%
TGCAAAGGGTTCCAATCCTG+CGG - chr4.3:10174053-10174072 MS.gene061787:intron 50.0%
TGGGCTGATCCTGCAAGTTA+CGG - chr4.3:10174265-10174284 MS.gene061787:intron 50.0%
TTGGACTAAGTATGCCTCGG+TGG - chr4.3:10174240-10174259 MS.gene061787:intron 50.0%
! CATTCTGGAGAAAGAGGCTC+AGG - chr4.3:10175071-10175090 MS.gene061787:intron 50.0%
! GTCGGTCTTCTCTTTTCGGT+AGG - chr4.3:10175005-10175024 MS.gene061787:intron 50.0%
!! TCCAAGCTTGAGAAGGCACT+CGG - chr4.3:10171459-10171478 MS.gene061787:CDS 50.0%
!! TCTGAAGGTGTTGGTGTCTC+TGG + chr4.3:10175111-10175130 None:intergenic 50.0%
!! TTCTATGAGAGCATTGGGCC+CGG - chr4.3:10176454-10176473 MS.gene061787:CDS 50.0%
ACCGAGTGCCTTCTCAAGCT+TGG + chr4.3:10171463-10171482 None:intergenic 55.0%
AGAATGCAAGGCTGGGAGGT+CGG + chr4.3:10172578-10172597 None:intergenic 55.0%
CACTGAGACGTTGAATGCGG+AGG - chr4.3:10175511-10175530 MS.gene061787:intron 55.0%
CTAAGTATGCCTCGGTGGCT+TGG - chr4.3:10174245-10174264 MS.gene061787:intron 55.0%
CTCCGCATTCAACGTCTCAG+TGG + chr4.3:10175513-10175532 None:intergenic 55.0%
CTCGGTGACCAATTCCCTGA+AGG - chr4.3:10171477-10171496 MS.gene061787:CDS 55.0%
GCAAAGGGTTCCAATCCTGC+GGG - chr4.3:10174054-10174073 MS.gene061787:intron 55.0%
TCCGCCGTGCAAACGTTCTT+TGG - chr4.3:10176385-10176404 MS.gene061787:CDS 55.0%
TGGCTCGACGGATCTTAGAC+AGG + chr4.3:10173821-10173840 None:intergenic 55.0%
TTGGCAGTGGTCCCAACCAT+GGG - chr4.3:10176287-10176306 MS.gene061787:intron 55.0%
! AGGCATGCGGTTTTCACCCT+CGG - chr4.3:10173597-10173616 MS.gene061787:intron 55.0%
! GTGCCGCTATGGCCACTATA+TGG + chr4.3:10171992-10172011 None:intergenic 55.0%
!! TGAGGAGTGTGTGTTGGCTC+TGG - chr4.3:10174310-10174329 MS.gene061787:intron 55.0%
GTTGGCAGTGGTCCCAACCA+TGG - chr4.3:10176286-10176305 MS.gene061787:intron 60.0%
! TGGGCGTGAGGAGTGTGTGT+TGG - chr4.3:10174304-10174323 MS.gene061787:intron 60.0%
AGGATCAGCCCAAGCCACCG+AGG + chr4.3:10174257-10174276 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 10171444 10176489 10171444 ID=MS.gene061787
chr4.3 mRNA 10171444 10176489 10171444 ID=MS.gene061787.t1;Parent=MS.gene061787
chr4.3 exon 10176373 10176489 10176373 ID=MS.gene061787.t1.exon1;Parent=MS.gene061787.t1
chr4.3 CDS 10176373 10176489 10176373 ID=cds.MS.gene061787.t1;Parent=MS.gene061787.t1
chr4.3 exon 10175523 10175639 10175523 ID=MS.gene061787.t1.exon2;Parent=MS.gene061787.t1
chr4.3 CDS 10175523 10175639 10175523 ID=cds.MS.gene061787.t1;Parent=MS.gene061787.t1
chr4.3 exon 10174733 10174831 10174733 ID=MS.gene061787.t1.exon3;Parent=MS.gene061787.t1
chr4.3 CDS 10174733 10174831 10174733 ID=cds.MS.gene061787.t1;Parent=MS.gene061787.t1
chr4.3 exon 10172718 10172906 10172718 ID=MS.gene061787.t1.exon4;Parent=MS.gene061787.t1
chr4.3 CDS 10172718 10172906 10172718 ID=cds.MS.gene061787.t1;Parent=MS.gene061787.t1
chr4.3 exon 10172372 10172553 10172372 ID=MS.gene061787.t1.exon5;Parent=MS.gene061787.t1
chr4.3 CDS 10172372 10172553 10172372 ID=cds.MS.gene061787.t1;Parent=MS.gene061787.t1
chr4.3 exon 10171444 10171849 10171444 ID=MS.gene061787.t1.exon6;Parent=MS.gene061787.t1
chr4.3 CDS 10171444 10171849 10171444 ID=cds.MS.gene061787.t1;Parent=MS.gene061787.t1
Gene Sequence

>MS.gene061787

ATGGGTGCTACTGGTTCCAAGCTTGAGAAGGCACTCGGTGACCAATTCCCTGAAGGAGAACGTTACTTTGGTCTTGAGAATTTCGGCAATACTTGTTATTGTAACAGCGTTTTACAGGTTTTAATCGATTCTTTTTAATCTTCTATTTTCCAATCCGATTCATTCTAAATCGTAGTGAATTTGCTTTCTTTGATTGTTTATTCATGATTCATACACATCGTTAATTGTAACCATTTTTTTCTTTTCTGAATTTATGTTGACTTGTCCAAACAAATTTTTGAAGAGTTTAATTGTTGAATAATCTATAAGGATTTTTGTTATTTACCTGTTTGGATTTGATTATTTGAGTTTATCTAATGACACAAGTCCTTGTGAGACTGTTTGGGAAAACTTATTAAAGCAATTTATGATATGTTTATAAGTTGTTTTCACTTATTTTCATAAGCTCTTCAAGATAACTTCTATAAACAGCTTATATGTTATATGTAAACAGTTTTAATTTAATCTATTTTTTGTTATATAATTATTTTTAGATAATAGGGTTGCCATATAGTGGCCATAGCGGCACTGTAACACTATAGAGTAGCCGAATTTAGACTAATCGCTATAGTGGCTATTGCAGTTGTGTTGTAGCATAGTAGAATTTGAACAAACCGTTGTTTTTTGTGATTTGCAATCGACAACACTGCACAGAATCGCTTATATGACAATCACTTAATTAAGTTGTTCTTCCAAACAGGCCTAATTATGATTTTAAGTATTAAGTTTGAAGATGGGTTTGTTTGTTATATTTTTGTGGAGATTTCTGGGCTGTTCAGCATCATGTTACTCATTTTTCTACCTTCTGCAGGCACTATACTTTTGTGTTCCATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAACCTTAGGGGATGCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTGTTTTCACAGGTAATCAATTTGTAGTTTGGAAATTTTGTGCATTACATGGATGACGCCTCTATGCTTTTTCATATTTGATTGACTGAAGCATGATTCACAGTTTGATAGTTTGCATTCTCTTCACTAATTTCGGCGGCTATGATTCATGCTTTGGACTCTTGTCAAAGATGCTGCCGACCTCCCAGCCTTGCATTCTTCTTCCTCTTCTTTCATTTGGTCTTCAAACAAGTGTTTTTTTTTTATCTGAATGCCTCACAGTGGTTTTTGCTATCCTTAGTTTTGGTTTTAAAACCATATTTTCTTTAATAACATATCCTACCAGATTTTCTTATTTTTTATTTCCTTTTTCTGTTATTGTTTGTGTGTTGAAGGAGAATTTGTCAGGCATGAGACAAACAAGTTGAGAATAAAAGATAGGGTTACTGAATAAAAATGTAAATAAGTCTTTTGTAACTGATCATAGAAGCTGCACCATGATTATCTAGCATCTGGAAAGTATGAAAATTAGTCGTTGCAAATTTTAAAATCAGCGTGATACATAAGACATCCAACAATAGAGTTTACTTTGTGAGGTTTGTGAACCTGAAACAAATCATCTGTATAAATCCTATCAAGTATCAACTATATCTTGATGTCATTTACATGCTTAGTTATGTCTTTCTTGATCCTGAATTCAACATATTTATTTCTGTTGGTATAGATAAGTTCGCAGAAGAAGAAAACCGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTTCGTAGCTATATGCATCAGGTATGTACTCTACCATAAGTGTTAAGAATAAGTTCCTGTACATCGAATTGTTATTCATGAGTTCTGTAAAAACTGTTGACAGTGACATTTAGATTATAAAGTATAAATATAAATAAGACATTAGTTTGGATATGGGTTTGTATGCAGCGTTTGGCTATGTTACTTGTCACTCCATGATTATGCAAAGATGCAAGTAGGTGTTGCTCCATGTTTATTTACATTTCCTTGCTTCGAACTTTCAGCTTTTCTGCACATGAATCCTAGTTAGAGATGCTATTATCTATATTGGATGTTTCCAGATGGTAATGTTGTGAGCCTGACAACAAGTATTTCGGTTGGTAGATCATTAGGCAGACCAGTGTTACTTTTTTATTCTGTCAGGTTGGACCAAATTCAAGGCATGCGGTTTTCACCCTCGGAATTGTTACAAGCTTTTTTTAATTCACAAAAACATTTAAGGTTGTTAGCATGTTAACATTTACTTTATGTTGACAGTCTCACATTTGATGTGATATGGCCCCTGAAAAATTATTTATAAGCGGGAGGCATCTCTCACCTTACAAGCTAGTTTTGTAGGGTGAATTAACACCAATCCAAAATTTGAGATGGTGTCAGAGCCTGTCTAAGATCCGTCGAGCCACCTGTTTTGAATCCACTCAGGTCAATTGGATCAGCCCAACACATGTTGAAGCTGAAAGCAAATTCTAAGATGAGGCCTTTAAATGCTTAAGTTAAAAATATAATAATTTGCAACAAAAAAAATATAAAATATACATCACTATGTATAAAATAAAAAAGTCAATAAGATATTTATTTGTGATGCAGTGGTTTAGCTTGCTTGTTTTTCTCAATTGCAAAGGGTTCCAATCCTGCGGGTAGTAATTTTTGGGCATTATTTTTTGTAAAGAAATACGATAATGCAGAAAAGGCTTATCCAAGAATTGAATGTAAGTTCTACCTGCAAAACAAAGGCAAACCACTGTGTCATTATAAACATTTGCAATATCATTGGACAGCACAATATATGGAAATCCACCACTTGGACTAAGTATGCCTCGGTGGCTTGGGCTGATCCTGCAAGTTACGGTCTAGATGTTCATTCATGGGCGTGAGGAGTGTGTGTTGGCTCTGGTGAGAGTCCCACAAGAGTCAACACAAATTTATAACCTGAAGGGTATTTATAAGTGGGTCCCACCAGAGTCAACACAAATTTATAACATGAAAAAGTAGTTATAAGTGGGAGACATTCTTCACCTTACAAGTTGGTTTTGTATGGTTGAGTTAGGTCCGACCAAATTAAGACTTTAGATATGATCTTTATTAACTATTATTATATATCCGGTGGAATCATAATCTTTTCCATGTCACAACTCACAACCATCCCTTATCACTTTACATTATTAAGCCTGCTAATAGATTTGGCTGCATATCACTGTTATACTGATGGTGATACCAATTAGTTTTTTTTTCTTTTCTTTTCCTTTTCATTCTATGATGAAATAATTCTGTAACTGATGTTGGGTGTCTGTTTAGCAGAAATTACAACAATTTGTTACTTGCAGATGAGATTGTAGTTTACCATGAATTTTCACTGTAGCATACAAGTTTATTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATCATTGATTGTTTATAGTCTGTTAATTTTAATGTATCATTGGTTGCACAGTACCTCATATTTTGTCTAGTTTTTAACTAATACAACAATGTTACTGTCGGTCTTCTCTTTTCGGTAGGATGCCCACGAATTCTTGAACTTTTTACTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAGACTGATCCAGAGACACCAACACCTTCAGAAAAGGTTGCAAATGGGTTCAAGAATGGTCATGCTAATGGACCTAAGAAAGAGCCTTTAATTACTTGGGTACACAAAAACTTTCAGGTGACCTGCTTTGCCAATTTTTTTTTGTCATTTTTTTTTGTTGTTGCAACAAATTTGGAGGAAGTATAAATTGTGAACTTTGTAATGGATACAGTTTGTTGATCACAAAATTTAGATTTATATCTATATTGTGGAATTTCATTGTTGCAAGTTGTTGTGACCAGGGAATACTCACCAATGAGACAAGGTGCTTGCAATGTGAAACTGTGACAGCTAGGGACGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGTTTGAAAAATTTCAGTTCCACTGAGACGTTGAATGCGGAGGACAAATTTTTCTGTGACAAGTGCTGCAGGTATATGCTTTTATATTGTGGCATCAGCTGTTACTTGGTTTCTCGATTGGTTGGGAAAATGTAAACTGTCTGTTGTCAACCATTTTGAGTCATGTGCTTGGCTAAACGATGCTACTGCTTGTTTAACATGGATTTCAATTGATGCATTAGACTTTATCAAAAACCAAATTTTCAGATATCTGTTCAGATCTAGATCATTTTAGTAGTTTCCTGTAAAGGTTTTTTACGCCATTGTTTTCTACTTTTAACTGGAGAGGGAAATAAAATAAATGTGGTGACTCATATATGTCAAATTGTTTGAATATCATGTATATTTTTGGACATTTTATCTCCTTTTCATTTTCAACAAGCAAACCGTAACATGTTTGTTTTTCCATTGATTGGCACTTCATTTGTTTTCTGAACGGGATTTCTTGGTCATGTTAGTTCAGTGTGTACAAATATATATGCACTCTTTTCCTCTGTTTTTCATGCCCATTTACCAATCTAGTGACCAAGGTGCAAACTTTCTTTTGGTATTAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCTCCTCACATTCTGGTCATTCATCTCAAGCGGTTTAAATACATGGAACAGCTGGGCCGCTACAAGAAGTTGTCTTACCGAGTTGTTTTTCCCCTTGAGCTGAAGCTGAGTAATACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCGGTAGTTGTTCATGTTGGCAGTGGTCCCAACCATGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCCGCCGTGCAAACGTTCTTTGGATCACCACAGGAATATTCAACTAACACCGACCATGGGTACATTTTGTTCTATGAGAGCATTGGGCCCGGTAACAGTAACTAG
Protein sequence

>MS.gene061787.t1

MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKTLGDAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKTDPETPTPSEKVANGFKNGHANGPKKEPLITWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSPQEYSTNTDHGYILFYESIGPGNSN