Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063680.t1 | XP_024640934.1 | 96.9 | 227 | 7 | 0 | 1 | 227 | 1 | 227 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063680.t1 | Q93VH2 | 38.5 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 4.7e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063680.t1 | G7JYS6 | 96.9 | 227 | 7 | 0 | 1 | 227 | 100 | 326 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene063680 | -0.811132 | 8.16E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene063680 | -0.816464 | 5.46E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene063680 | -0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene063680 | -0.812706 | 3.71E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene063680 | 0.807013 | 6.22E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene063680 | -0.807355 | 5.26E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene063680 | -0.810819 | 9.53E-51 | -1.69E-46 |
| MS.gene051874 | MS.gene063680 | -0.844547 | 7.07E-59 | -1.69E-46 |
| MS.gene053626 | MS.gene063680 | -0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene063680 | -0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene063680 | -0.849162 | 3.86E-60 | -1.69E-46 |
| MS.gene054595 | MS.gene063680 | -0.806199 | 9.24E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene063680 | -0.802164 | 6.39E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene063680 | -0.801609 | 8.31E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene063680 | -0.845162 | 4.82E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene063680 | -0.81462 | 1.40E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene063680 | -0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene063680 | -0.831119 | 2.00E-55 | -1.69E-46 |
| MS.gene057734 | MS.gene063680 | -0.808444 | 3.09E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene063680 | -0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene059305 | MS.gene063680 | -0.811086 | 8.35E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene063680 | -0.805063 | 1.60E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene063680 | -0.825565 | 4.37E-54 | -1.69E-46 |
| MS.gene059699 | MS.gene063680 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene063680 | 0.807783 | 4.27E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene063680 | -0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene063680 | -0.807986 | 3.87E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene063680 | -0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene060818 | MS.gene063680 | -0.847049 | 1.48E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene063680 | -0.829366 | 5.36E-55 | -1.69E-46 |
| MS.gene061134 | MS.gene063680 | -0.809881 | 1.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063680.t1 | MTR_5g023110 | 96.916 | 227 | 7 | 0 | 1 | 227 | 100 | 326 | 2.18e-166 | 462 |
| MS.gene063680.t1 | MTR_3g112160 | 36.559 | 186 | 111 | 4 | 41 | 221 | 130 | 313 | 1.18e-32 | 120 |
| MS.gene063680.t1 | MTR_1g022485 | 34.946 | 186 | 114 | 4 | 41 | 221 | 167 | 350 | 1.09e-28 | 110 |
| MS.gene063680.t1 | MTR_3g112160 | 39.823 | 113 | 65 | 3 | 34 | 144 | 122 | 233 | 1.22e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063680.t1 | AT5G66050 | 52.632 | 228 | 103 | 3 | 1 | 224 | 5 | 231 | 1.59e-81 | 244 |
| MS.gene063680.t1 | AT5G66050 | 52.632 | 228 | 103 | 3 | 1 | 224 | 99 | 325 | 2.57e-80 | 244 |
| MS.gene063680.t1 | AT5G66050 | 52.423 | 227 | 103 | 3 | 1 | 223 | 99 | 324 | 8.62e-80 | 242 |
| MS.gene063680.t1 | AT5G66050 | 51.675 | 209 | 96 | 3 | 1 | 205 | 99 | 306 | 1.75e-70 | 218 |
| MS.gene063680.t1 | AT1G19660 | 38.462 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 6.89e-34 | 124 |
| MS.gene063680.t1 | AT1G19660 | 38.462 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 6.89e-34 | 124 |
| MS.gene063680.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene063680.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene063680.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene063680.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene063680.t1 | AT1G19660 | 36.364 | 176 | 105 | 4 | 41 | 211 | 137 | 310 | 1.13e-28 | 110 |
Find 38 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTATTTGCAACATTAA+TGG | 0.190657 | 5.3:-13486997 | None:intergenic |
| ATTTCTTTACTTACATATAT+TGG | 0.231030 | 5.3:-13487174 | None:intergenic |
| TTTACTCTTTCAGGTGATAA+TGG | 0.294692 | 5.3:+13486786 | MS.gene063680:intron |
| AGTTCTTGAGCTACCGAATC+TGG | 0.317594 | 5.3:-13487423 | None:intergenic |
| CAACTAGGTTATTCACAAAC+TGG | 0.340562 | 5.3:-13486099 | None:intergenic |
| TACCGAATCTGGACCATCTA+TGG | 0.358074 | 5.3:-13487412 | None:intergenic |
| TATGTTCTGCCCATTGTTGT+AGG | 0.358421 | 5.3:+13485835 | MS.gene063680:CDS |
| GGGCAGAGTGCATAATAAAA+AGG | 0.382577 | 5.3:+13487233 | MS.gene063680:CDS |
| TTTATGATGTATTGCTTGAC+AGG | 0.409824 | 5.3:+13487259 | MS.gene063680:CDS |
| GGTTATTCACAAACTGGAAC+TGG | 0.445405 | 5.3:-13486093 | None:intergenic |
| GTTTGTTACAGTGCCATAGA+TGG | 0.457604 | 5.3:+13487399 | MS.gene063680:intron |
| TGCCATAGATGGTCCAGATT+CGG | 0.469346 | 5.3:+13487410 | MS.gene063680:CDS |
| TGCCATATTGCAGGATTGGC+CGG | 0.472759 | 5.3:+13486069 | MS.gene063680:intron |
| CATGATCTAGTCTTTCAACT+AGG | 0.480955 | 5.3:-13486114 | None:intergenic |
| TGCCAGATTGTACCTTAGCC+AGG | 0.486892 | 5.3:+13486843 | MS.gene063680:CDS |
| ATAAGACTCGGCTATGGAAT+GGG | 0.490306 | 5.3:+13487213 | MS.gene063680:CDS |
| TATAAGACTCGGCTATGGAA+TGG | 0.494787 | 5.3:+13487212 | MS.gene063680:CDS |
| GCATACATACCTACAACAAT+GGG | 0.495198 | 5.3:-13485844 | None:intergenic |
| TGCAACATTAATGGCATCTG+AGG | 0.495726 | 5.3:-13486988 | None:intergenic |
| AGCATACATACCTACAACAA+TGG | 0.501223 | 5.3:-13485845 | None:intergenic |
| TTCACAAACTGGAACTGGTC+CGG | 0.513315 | 5.3:-13486088 | None:intergenic |
| TTTCTCAAGATTTCTTGTGA+TGG | 0.525235 | 5.3:+13485808 | MS.gene063680:CDS |
| AAATCTTCGTAAATCATCTC+AGG | 0.525481 | 5.3:+13487671 | MS.gene063680:CDS |
| GAAAAGTGATATTATTAGTG+TGG | 0.530123 | 5.3:+13486956 | MS.gene063680:CDS |
| TACCTGGCTAAGGTACAATC+TGG | 0.547079 | 5.3:-13486845 | None:intergenic |
| GACGCTATAAGACTCGGCTA+TGG | 0.548905 | 5.3:+13487207 | MS.gene063680:CDS |
| GCAACATTAATGGCATCTGA+GGG | 0.557171 | 5.3:-13486987 | None:intergenic |
| TCCAGAAAATAGCTCGAGAA+GGG | 0.576030 | 5.3:+13485732 | MS.gene063680:CDS |
| TATGCATTTAGCTATCAAGC+AGG | 0.596160 | 5.3:+13487461 | MS.gene063680:CDS |
| ATAGTAGTTTATTCAGACAA+GGG | 0.597464 | 5.3:+13485755 | MS.gene063680:CDS |
| TTCACAGACGCTATAAGACT+CGG | 0.599122 | 5.3:+13487201 | MS.gene063680:CDS |
| TAATGTTGCAAATAAATGCA+AGG | 0.602512 | 5.3:+13487001 | MS.gene063680:CDS |
| AAGTTGTCAATACCTGGCTA+AGG | 0.603032 | 5.3:-13486855 | None:intergenic |
| TTCCAGAAAATAGCTCGAGA+AGG | 0.604172 | 5.3:+13485731 | MS.gene063680:CDS |
| GATAGTAGTTTATTCAGACA+AGG | 0.606215 | 5.3:+13485754 | MS.gene063680:CDS |
| CAGGAAAGATTTAATGACGC+AGG | 0.608205 | 5.3:+13487480 | MS.gene063680:CDS |
| CAACATTAATGGCATCTGAG+GGG | 0.647803 | 5.3:-13486986 | None:intergenic |
| TGAAGTGGAACAAGAGATCG+AGG | 0.688028 | 5.3:+13485976 | MS.gene063680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTGATTTTTTAA+AGG | + | chr5.3:13487048-13487067 | MS.gene063680:intron | 10.0% |
| !!! | AGAAATTTTGATTTTTTAAA+GGG | + | chr5.3:13487049-13487068 | MS.gene063680:intron | 10.0% |
| !! | ATTTCTTTACTTACATATAT+TGG | - | chr5.3:13487177-13487196 | None:intergenic | 15.0% |
| !! | CAAATATAAAAATCATAAAG+AGG | - | chr5.3:13487141-13487160 | None:intergenic | 15.0% |
| !!! | GAAATTTTGATTTTTTAAAG+GGG | + | chr5.3:13487050-13487069 | MS.gene063680:intron | 15.0% |
| !! | AAAAATCAAAATTTCTTGAC+AGG | - | chr5.3:13487045-13487064 | None:intergenic | 20.0% |
| !! | AAAATCAAAATTTCTTGACA+GGG | - | chr5.3:13487044-13487063 | None:intergenic | 20.0% |
| !! | ACTAAAACAGAAAGAATTAT+TGG | + | chr5.3:13486604-13486623 | MS.gene063680:intron | 20.0% |
| !! | CAATTTGAATAAAGTTAAAC+AGG | + | chr5.3:13486641-13486660 | MS.gene063680:intron | 20.0% |
| !! | TTATATGTTAGGTATAGTTT+AGG | + | chr5.3:13486240-13486259 | MS.gene063680:intron | 20.0% |
| !!! | AATAAAAAAGCATAACAAGA+AGG | - | chr5.3:13486895-13486914 | None:intergenic | 20.0% |
| !!! | TAAATTCGTGTTTTATTGAA+CGG | + | chr5.3:13485905-13485924 | MS.gene063680:intron | 20.0% |
| !!! | TAATTCTTTCTGTTTTAGTA+TGG | - | chr5.3:13486603-13486622 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTTACTCTTTC+AGG | + | chr5.3:13486777-13486796 | MS.gene063680:intron | 20.0% |
| !!! | TTTTTATATTTGATTTGTGC+AGG | + | chr5.3:13487149-13487168 | MS.gene063680:intron | 20.0% |
| ! | AAAACATTAGAACAAGGATA+AGG | - | chr5.3:13486709-13486728 | None:intergenic | 25.0% |
| ! | AATCAAAATTTCCAAGAAGA+TGG | - | chr5.3:13486325-13486344 | None:intergenic | 25.0% |
| ! | AGAAATCTTGAGAAAAATTG+TGG | - | chr5.3:13485803-13485822 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTATTCAGACAA+GGG | + | chr5.3:13485755-13485774 | MS.gene063680:CDS | 25.0% |
| ! | ATGATATAGCATGAATGTAA+AGG | - | chr5.3:13487360-13487379 | None:intergenic | 25.0% |
| ! | ATTACATTATACCATCTTCT+TGG | + | chr5.3:13486311-13486330 | MS.gene063680:intron | 25.0% |
| ! | ATTTAAAAGTTGTCAATACC+TGG | - | chr5.3:13486864-13486883 | None:intergenic | 25.0% |
| ! | GAAAAGTGATATTATTAGTG+TGG | + | chr5.3:13486956-13486975 | MS.gene063680:CDS | 25.0% |
| ! | GAAATCTTGAGAAAAATTGT+GGG | - | chr5.3:13485802-13485821 | None:intergenic | 25.0% |
| ! | GATGCAATTAGACTAAATAA+AGG | - | chr5.3:13486509-13486528 | None:intergenic | 25.0% |
| ! | GCATTTATTTGCAACATTAA+TGG | - | chr5.3:13487000-13487019 | None:intergenic | 25.0% |
| ! | TAATGTTGCAAATAAATGCA+AGG | + | chr5.3:13487001-13487020 | MS.gene063680:CDS | 25.0% |
| ! | TGAAATTATTTGCATGTAAG+AGG | - | chr5.3:13486668-13486687 | None:intergenic | 25.0% |
| ! | TGATTCTAAGCTTATATGTT+AGG | + | chr5.3:13486229-13486248 | MS.gene063680:intron | 25.0% |
| !! | ATATGGCATTTTATAAGGAT+CGG | - | chr5.3:13486057-13486076 | None:intergenic | 25.0% |
| !!! | ATGAGAGATTATAGCTTTTT+TGG | - | chr5.3:13486397-13486416 | None:intergenic | 25.0% |
| !!! | TGAGAGATTATAGCTTTTTT+GGG | - | chr5.3:13486396-13486415 | None:intergenic | 25.0% |
| !!! | TTTTTTGACCTGTATCTTAA+TGG | + | chr5.3:13486002-13486021 | MS.gene063680:intron | 25.0% |
| AAAAGTCAACAAACAAGCTT+AGG | - | chr5.3:13487625-13487644 | None:intergenic | 30.0% | |
| AAAGACTAGATCATGAAGTA+TGG | + | chr5.3:13486122-13486141 | MS.gene063680:intron | 30.0% | |
| AAATCTTCGTAAATCATCTC+AGG | + | chr5.3:13487671-13487690 | MS.gene063680:CDS | 30.0% | |
| ACGCAGGTAAAATATTGTTT+GGG | + | chr5.3:13487496-13487515 | MS.gene063680:intron | 30.0% | |
| ATATAGCATGAATGTAAAGG+AGG | - | chr5.3:13487357-13487376 | None:intergenic | 30.0% | |
| ATTAGAACAAGGATAAGGAT+GGG | - | chr5.3:13486704-13486723 | None:intergenic | 30.0% | |
| CTTATAAAATGCCATATTGC+AGG | + | chr5.3:13486060-13486079 | MS.gene063680:intron | 30.0% | |
| GATAGTAGTTTATTCAGACA+AGG | + | chr5.3:13485754-13485773 | MS.gene063680:CDS | 30.0% | |
| TGAAGCAATAGCAATGTATT+GGG | + | chr5.3:13486728-13486747 | MS.gene063680:intron | 30.0% | |
| TGATTTATTCTATGACCTAG+TGG | - | chr5.3:13486461-13486480 | None:intergenic | 30.0% | |
| TGCTTCAAAACATTAGAACA+AGG | - | chr5.3:13486715-13486734 | None:intergenic | 30.0% | |
| TGTCTAACTTCAAAATGCTT+AGG | - | chr5.3:13487115-13487134 | None:intergenic | 30.0% | |
| TTACACATCTGCAAGTATTA+TGG | + | chr5.3:13487539-13487558 | MS.gene063680:intron | 30.0% | |
| TTGAAGCAATAGCAATGTAT+TGG | + | chr5.3:13486727-13486746 | MS.gene063680:intron | 30.0% | |
| TTTATGATGTATTGCTTGAC+AGG | + | chr5.3:13487259-13487278 | MS.gene063680:CDS | 30.0% | |
| TTTCTCAAGATTTCTTGTGA+TGG | + | chr5.3:13485808-13485827 | MS.gene063680:CDS | 30.0% | |
| ! | CTGCAATATGGCATTTTATA+AGG | - | chr5.3:13486062-13486081 | None:intergenic | 30.0% |
| ! | GTTTTCAATCTGAGTTACAA+CGG | + | chr5.3:13485689-13485708 | MS.gene063680:CDS | 30.0% |
| ! | TTTACTCTTTCAGGTGATAA+TGG | + | chr5.3:13486786-13486805 | MS.gene063680:intron | 30.0% |
| !! | CTAATAATATCACTTTTCCC+TGG | - | chr5.3:13486954-13486973 | None:intergenic | 30.0% |
| AAAATGCCATATTGCAGGAT+TGG | + | chr5.3:13486065-13486084 | MS.gene063680:intron | 35.0% | |
| AAACTTGCACACAGAATCTA+TGG | - | chr5.3:13487334-13487353 | None:intergenic | 35.0% | |
| AAGCTTGAATACCCAAATCT+TGG | + | chr5.3:13487583-13487602 | MS.gene063680:intron | 35.0% | |
| AGCATACATACCTACAACAA+TGG | - | chr5.3:13485848-13485867 | None:intergenic | 35.0% | |
| AGTTTATAATTCCTTCAGCC+AGG | + | chr5.3:13486933-13486952 | MS.gene063680:intron | 35.0% | |
| CAACTAGGTTATTCACAAAC+TGG | - | chr5.3:13486102-13486121 | None:intergenic | 35.0% | |
| CATTAGAACAAGGATAAGGA+TGG | - | chr5.3:13486705-13486724 | None:intergenic | 35.0% | |
| CCATGAAAATGCCAAGATTT+GGG | - | chr5.3:13487597-13487616 | None:intergenic | 35.0% | |
| GACGCAGGTAAAATATTGTT+TGG | + | chr5.3:13487495-13487514 | MS.gene063680:intron | 35.0% | |
| GCATACATACCTACAACAAT+GGG | - | chr5.3:13485847-13485866 | None:intergenic | 35.0% | |
| GTTTATAATTCCTTCAGCCA+GGG | + | chr5.3:13486934-13486953 | MS.gene063680:intron | 35.0% | |
| TATGCATTTAGCTATCAAGC+AGG | + | chr5.3:13487461-13487480 | MS.gene063680:CDS | 35.0% | |
| TCCATGAAAATGCCAAGATT+TGG | - | chr5.3:13487598-13487617 | None:intergenic | 35.0% | |
| TGGATGGGTACAATATGATT+TGG | - | chr5.3:13486441-13486460 | None:intergenic | 35.0% | |
| TTATTCTATGACCTAGTGGA+TGG | - | chr5.3:13486457-13486476 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTAGATGCTGAAG+TGG | + | chr5.3:13485961-13485980 | MS.gene063680:CDS | 35.0% |
| ! | CATGATCTAGTCTTTCAACT+AGG | - | chr5.3:13486117-13486136 | None:intergenic | 35.0% |
| ! | TATTCTATGACCTAGTGGAT+GGG | - | chr5.3:13486456-13486475 | None:intergenic | 35.0% |
| !! | ATTTTCTGGAAATGGTGACA+CGG | - | chr5.3:13485722-13485741 | None:intergenic | 35.0% |
| AAGTTGTCAATACCTGGCTA+AGG | - | chr5.3:13486858-13486877 | None:intergenic | 40.0% | |
| ATAAGACTCGGCTATGGAAT+GGG | + | chr5.3:13487213-13487232 | MS.gene063680:CDS | 40.0% | |
| CAACATTAATGGCATCTGAG+GGG | - | chr5.3:13486989-13487008 | None:intergenic | 40.0% | |
| CAGGAAAGATTTAATGACGC+AGG | + | chr5.3:13487480-13487499 | MS.gene063680:CDS | 40.0% | |
| CATCGATGCATATCCTATCA+CGG | - | chr5.3:13485874-13485893 | None:intergenic | 40.0% | |
| GCAACATTAATGGCATCTGA+GGG | - | chr5.3:13486990-13487009 | None:intergenic | 40.0% | |
| GCCAATGAACATTCAAGCAT+TGG | + | chr5.3:13486173-13486192 | MS.gene063680:intron | 40.0% | |
| GCCAATGCTTGAATGTTCAT+TGG | - | chr5.3:13486177-13486196 | None:intergenic | 40.0% | |
| GGGCAGAGTGCATAATAAAA+AGG | + | chr5.3:13487233-13487252 | MS.gene063680:CDS | 40.0% | |
| GGTTATTCACAAACTGGAAC+TGG | - | chr5.3:13486096-13486115 | None:intergenic | 40.0% | |
| GTGCACAACCATTAAGATAC+AGG | - | chr5.3:13486013-13486032 | None:intergenic | 40.0% | |
| TATAAGACTCGGCTATGGAA+TGG | + | chr5.3:13487212-13487231 | MS.gene063680:CDS | 40.0% | |
| TATGTATGCTATGCCGTGAT+AGG | + | chr5.3:13485858-13485877 | MS.gene063680:intron | 40.0% | |
| TATGTTCTGCCCATTGTTGT+AGG | + | chr5.3:13485835-13485854 | MS.gene063680:CDS | 40.0% | |
| TCATATTGTACCCATCCACT+AGG | + | chr5.3:13486443-13486462 | MS.gene063680:intron | 40.0% | |
| TCCAGAAAATAGCTCGAGAA+GGG | + | chr5.3:13485732-13485751 | MS.gene063680:CDS | 40.0% | |
| TGCAACATTAATGGCATCTG+AGG | - | chr5.3:13486991-13487010 | None:intergenic | 40.0% | |
| TGCATCATTAGTCCTTCTCA+AGG | + | chr5.3:13486523-13486542 | MS.gene063680:intron | 40.0% | |
| TTCACAGACGCTATAAGACT+CGG | + | chr5.3:13487201-13487220 | MS.gene063680:CDS | 40.0% | |
| TTCCAGAAAATAGCTCGAGA+AGG | + | chr5.3:13485731-13485750 | MS.gene063680:CDS | 40.0% | |
| ! | AACGGTTCTTTTGTTGATGC+AGG | + | chr5.3:13485923-13485942 | MS.gene063680:intron | 40.0% |
| ! | CCCAAATCTTGGCATTTTCA+TGG | + | chr5.3:13487594-13487613 | MS.gene063680:intron | 40.0% |
| ! | GTTTGTTACAGTGCCATAGA+TGG | + | chr5.3:13487399-13487418 | MS.gene063680:intron | 40.0% |
| !! | CTCGAGCTATTTTCTGGAAA+TGG | - | chr5.3:13485730-13485749 | None:intergenic | 40.0% |
| !! | TTTTCTGGAAATGGTGACAC+GGG | - | chr5.3:13485721-13485740 | None:intergenic | 40.0% |
| !!! | AGCTTTTTTGGGAGTTCTCA+TGG | - | chr5.3:13486385-13486404 | None:intergenic | 40.0% |
| !!! | TGTTGACTTTTGCAGCTACA+TGG | + | chr5.3:13487634-13487653 | MS.gene063680:intron | 40.0% |
| ACACAGAATCTATGGTGGCA+AGG | - | chr5.3:13487326-13487345 | None:intergenic | 45.0% | |
| AGTTCTTGAGCTACCGAATC+TGG | - | chr5.3:13487426-13487445 | None:intergenic | 45.0% | |
| CTCACACAATGTCCTTGAGA+AGG | - | chr5.3:13486538-13486557 | None:intergenic | 45.0% | |
| CTTGCACACAGAATCTATGG+TGG | - | chr5.3:13487331-13487350 | None:intergenic | 45.0% | |
| TACCGAATCTGGACCATCTA+TGG | - | chr5.3:13487415-13487434 | None:intergenic | 45.0% | |
| TACCTGGCTAAGGTACAATC+TGG | - | chr5.3:13486848-13486867 | None:intergenic | 45.0% | |
| TGAAGTGGAACAAGAGATCG+AGG | + | chr5.3:13485976-13485995 | MS.gene063680:CDS | 45.0% | |
| TGCCATAGATGGTCCAGATT+CGG | + | chr5.3:13487410-13487429 | MS.gene063680:CDS | 45.0% | |
| TGGGTATTCAAGCTTGCAGA+AGG | - | chr5.3:13487578-13487597 | None:intergenic | 45.0% | |
| TTCACAAACTGGAACTGGTC+CGG | - | chr5.3:13486091-13486110 | None:intergenic | 45.0% | |
| !! | TATCACTTTTCCCTGGCTGA+AGG | - | chr5.3:13486947-13486966 | None:intergenic | 45.0% |
| !! | TCCCTTCTCGAGCTATTTTC+TGG | - | chr5.3:13485736-13485755 | None:intergenic | 45.0% |
| CAAGGATGCTACAGGTGACA+CGG | - | chr5.3:13487308-13487327 | None:intergenic | 50.0% | |
| GACGCTATAAGACTCGGCTA+TGG | + | chr5.3:13487207-13487226 | MS.gene063680:CDS | 50.0% | |
| TATGGTGGCAAGGATGCTAC+AGG | - | chr5.3:13487316-13487335 | None:intergenic | 50.0% | |
| TGCCAGATTGTACCTTAGCC+AGG | + | chr5.3:13486843-13486862 | MS.gene063680:CDS | 50.0% | |
| ! | TGCCATATTGCAGGATTGGC+CGG | + | chr5.3:13486069-13486088 | MS.gene063680:intron | 50.0% |
| GTCCGGCCAATCCTGCAATA+TGG | - | chr5.3:13486074-13486093 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 13485676 | 13487701 | 13485676 | ID=MS.gene063680 |
| chr5.3 | mRNA | 13485676 | 13487701 | 13485676 | ID=MS.gene063680.t1;Parent=MS.gene063680 |
| chr5.3 | exon | 13485676 | 13485856 | 13485676 | ID=MS.gene063680.t1.exon1;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13485676 | 13485856 | 13485676 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13485945 | 13485997 | 13485945 | ID=MS.gene063680.t1.exon2;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13485945 | 13485997 | 13485945 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13486082 | 13486138 | 13486082 | ID=MS.gene063680.t1.exon3;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13486082 | 13486138 | 13486082 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13486799 | 13486864 | 13486799 | ID=MS.gene063680.t1.exon4;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13486799 | 13486864 | 13486799 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13486951 | 13487022 | 13486951 | ID=MS.gene063680.t1.exon5;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13486951 | 13487022 | 13486951 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13487171 | 13487280 | 13487171 | ID=MS.gene063680.t1.exon6;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13487171 | 13487280 | 13487171 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13487410 | 13487501 | 13487410 | ID=MS.gene063680.t1.exon7;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13487410 | 13487501 | 13487410 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| chr5.3 | exon | 13487649 | 13487701 | 13487649 | ID=MS.gene063680.t1.exon8;Parent=MS.gene063680.t1 |
| chr5.3 | CDS | 13487649 | 13487701 | 13487649 | ID=cds.MS.gene063680.t1;Parent=MS.gene063680.t1 |
| Gene Sequence |
| Protein sequence |
