Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065031.t1 | XP_013470314.1 | 96.8 | 315 | 10 | 0 | 1 | 315 | 1 | 315 | 1.60E-170 | 608.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065031.t1 | Q9C9X3 | 54.9 | 317 | 138 | 2 | 1 | 314 | 1 | 315 | 8.1e-94 | 345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065031.t1 | A0A072VRI5 | 96.8 | 315 | 10 | 0 | 1 | 315 | 1 | 315 | 1.2e-170 | 608.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065031 | MS.gene030809 | PPI |
| MS.gene065031 | MS.gene061777 | PPI |
| MS.gene57291 | MS.gene065031 | PPI |
| MS.gene065031 | MS.gene55897 | PPI |
| MS.gene065031 | MS.gene056195 | PPI |
| MS.gene065031 | MS.gene00058 | PPI |
| MS.gene065031 | MS.gene89484 | PPI |
| MS.gene065031 | MS.gene28077 | PPI |
| MS.gene065031 | MS.gene058336 | PPI |
| MS.gene065031 | MS.gene010215 | PPI |
| MS.gene065031 | MS.gene67887 | PPI |
| MS.gene065031 | MS.gene035891 | PPI |
| MS.gene016642 | MS.gene065031 | PPI |
| MS.gene065031 | MS.gene45772 | PPI |
| MS.gene065031 | MS.gene92405 | PPI |
| MS.gene065031 | MS.gene043964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065031.t1 | MTR_1g112520 | 96.825 | 315 | 10 | 0 | 1 | 315 | 1 | 315 | 0.0 | 637 |
| MS.gene065031.t1 | MTR_6g071615 | 91.429 | 315 | 27 | 0 | 1 | 315 | 1 | 315 | 0.0 | 585 |
| MS.gene065031.t1 | MTR_6g071605 | 87.937 | 315 | 38 | 0 | 1 | 315 | 1 | 315 | 0.0 | 581 |
| MS.gene065031.t1 | MTR_6g071595 | 90.476 | 315 | 30 | 0 | 1 | 315 | 1 | 315 | 0.0 | 556 |
| MS.gene065031.t1 | MTR_8g107640 | 78.344 | 314 | 68 | 0 | 1 | 314 | 1 | 314 | 0.0 | 530 |
| MS.gene065031.t1 | MTR_6g071595 | 89.200 | 250 | 27 | 0 | 1 | 250 | 1 | 250 | 1.35e-161 | 451 |
| MS.gene065031.t1 | MTR_1g033560 | 59.748 | 318 | 122 | 3 | 1 | 315 | 1 | 315 | 6.66e-137 | 390 |
| MS.gene065031.t1 | MTR_8g038150 | 38.486 | 317 | 188 | 3 | 1 | 312 | 1 | 315 | 1.70e-71 | 224 |
| MS.gene065031.t1 | MTR_3g018780 | 37.778 | 315 | 193 | 3 | 1 | 314 | 1 | 313 | 6.98e-69 | 217 |
| MS.gene065031.t1 | MTR_8g038180 | 37.975 | 316 | 193 | 3 | 1 | 315 | 1 | 314 | 8.55e-68 | 214 |
| MS.gene065031.t1 | MTR_8g038220 | 37.580 | 314 | 191 | 4 | 1 | 312 | 1 | 311 | 3.83e-67 | 213 |
| MS.gene065031.t1 | MTR_8g038220 | 37.580 | 314 | 190 | 4 | 1 | 312 | 1 | 310 | 5.61e-67 | 212 |
| MS.gene065031.t1 | MTR_5g063670 | 37.304 | 319 | 190 | 5 | 1 | 314 | 1 | 314 | 8.56e-67 | 212 |
| MS.gene065031.t1 | MTR_3g018790 | 38.019 | 313 | 191 | 3 | 1 | 312 | 1 | 311 | 7.37e-66 | 209 |
| MS.gene065031.t1 | MTR_0276s0050 | 37.261 | 314 | 193 | 3 | 1 | 312 | 1 | 312 | 6.63e-65 | 207 |
| MS.gene065031.t1 | MTR_2g031980 | 36.306 | 314 | 195 | 4 | 1 | 312 | 1 | 311 | 8.41e-64 | 204 |
| MS.gene065031.t1 | MTR_8g038210 | 35.577 | 312 | 199 | 2 | 1 | 312 | 1 | 310 | 1.29e-60 | 196 |
| MS.gene065031.t1 | MTR_8g038210 | 35.144 | 313 | 201 | 2 | 1 | 313 | 1 | 311 | 1.72e-59 | 193 |
| MS.gene065031.t1 | MTR_6g028030 | 32.117 | 274 | 178 | 5 | 45 | 310 | 34 | 307 | 1.04e-39 | 142 |
| MS.gene065031.t1 | MTR_3g018790 | 33.195 | 241 | 159 | 2 | 74 | 313 | 19 | 258 | 1.09e-39 | 140 |
| MS.gene065031.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 1.69e-35 | 130 |
| MS.gene065031.t1 | MTR_8g038170 | 30.195 | 308 | 190 | 6 | 22 | 312 | 12 | 311 | 1.69e-35 | 130 |
| MS.gene065031.t1 | MTR_3g018920 | 33.491 | 212 | 108 | 3 | 1 | 212 | 1 | 179 | 1.61e-29 | 111 |
| MS.gene065031.t1 | MTR_3g018925 | 42.391 | 92 | 53 | 0 | 222 | 313 | 16 | 107 | 1.56e-16 | 74.7 |
| MS.gene065031.t1 | MTR_8g038090 | 46.377 | 69 | 36 | 1 | 245 | 312 | 22 | 90 | 5.03e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065031.t1 | AT1G68090 | 54.890 | 317 | 138 | 2 | 1 | 314 | 1 | 315 | 1.13e-126 | 365 |
| MS.gene065031.t1 | AT1G68090 | 52.381 | 252 | 115 | 2 | 1 | 249 | 1 | 250 | 1.20e-91 | 273 |
| MS.gene065031.t1 | AT1G68090 | 26.291 | 213 | 136 | 5 | 108 | 311 | 37 | 237 | 4.92e-16 | 76.6 |
| MS.gene065031.t1 | AT5G10230 | 40.190 | 316 | 187 | 2 | 1 | 315 | 1 | 315 | 7.25e-79 | 243 |
| MS.gene065031.t1 | AT5G65020 | 41.270 | 315 | 180 | 4 | 1 | 312 | 1 | 313 | 1.95e-77 | 239 |
| MS.gene065031.t1 | AT5G10220 | 39.308 | 318 | 189 | 3 | 1 | 315 | 1 | 317 | 2.97e-77 | 239 |
| MS.gene065031.t1 | AT1G35720 | 38.245 | 319 | 188 | 4 | 1 | 314 | 1 | 315 | 3.71e-69 | 218 |
| MS.gene065031.t1 | AT5G12380 | 36.909 | 317 | 189 | 5 | 1 | 312 | 1 | 311 | 9.16e-67 | 212 |
| MS.gene065031.t1 | AT5G65020 | 40.000 | 290 | 169 | 4 | 26 | 312 | 11 | 298 | 1.52e-66 | 211 |
| MS.gene065031.t1 | AT2G38760 | 34.169 | 319 | 202 | 3 | 1 | 312 | 1 | 318 | 5.85e-57 | 187 |
| MS.gene065031.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 19 | 318 | 5.86e-32 | 121 |
| MS.gene065031.t1 | AT2G38750 | 31.190 | 311 | 181 | 11 | 26 | 314 | 2 | 301 | 5.98e-32 | 121 |
Find 69 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCTTTCACTGAATATT+TGG | 0.107454 | 1.2:+83278390 | None:intergenic |
| TATAAGGCAACGAAAGGTTT+AGG | 0.272225 | 1.2:-83277387 | MS.gene065031:CDS |
| CAGTTATACCATTCAAAGTT+TGG | 0.326253 | 1.2:-83279081 | MS.gene065031:CDS |
| AAAACATCTTGACTAATGAT+TGG | 0.345482 | 1.2:+83277200 | None:intergenic |
| AATGAAGCTTCAGGGAATTT+CGG | 0.347354 | 1.2:-83278215 | MS.gene065031:CDS |
| ACCTTTGCAAAATACTTTCC+TGG | 0.349017 | 1.2:+83278155 | None:intergenic |
| AACCATGCAGGTATTGTATA+AGG | 0.355765 | 1.2:-83277403 | MS.gene065031:intron |
| GAAGTCAAATCAAACACTTC+GGG | 0.366848 | 1.2:-83279042 | MS.gene065031:CDS |
| TGAAAGGAGTGCCGCACATT+TGG | 0.368181 | 1.2:-83278378 | MS.gene065031:CDS |
| AAAATACTTTCCTGGATTAG+TGG | 0.371943 | 1.2:+83278163 | None:intergenic |
| ATAAGGCAACGAAAGGTTTA+GGG | 0.374325 | 1.2:-83277386 | MS.gene065031:CDS |
| GCAGTAAAGAATGAAGCTTC+AGG | 0.375034 | 1.2:-83278224 | MS.gene065031:CDS |
| AAACATCTTGACTAATGATT+GGG | 0.384346 | 1.2:+83277201 | None:intergenic |
| GGAGCTGAGTGGAAAGTTAG+AGG | 0.411832 | 1.2:-83279610 | MS.gene065031:intron |
| TTCAGACTGCTGTTCTACTT+TGG | 0.419993 | 1.2:-83279227 | MS.gene065031:intron |
| CTAATGATAACACGCTGATA+AGG | 0.423632 | 1.2:-83277362 | MS.gene065031:CDS |
| TATTAACCTCAGGGCCTTCA+TGG | 0.424392 | 1.2:+83278492 | None:intergenic |
| ATGTTGTTCGATATTCTTGT+TGG | 0.429076 | 1.2:+83279664 | None:intergenic |
| TCTTATTATCATGACATGTA+TGG | 0.429350 | 1.2:-83278344 | MS.gene065031:CDS |
| GCTTTCGAAACGCTTGGTTT+CGG | 0.430820 | 1.2:-83279631 | MS.gene065031:CDS |
| TTACTTCGGTAGCAGCTTCA+AGG | 0.438270 | 1.2:+83279142 | None:intergenic |
| GCAATTTCTCTATTAACCTC+AGG | 0.450053 | 1.2:+83278482 | None:intergenic |
| GATAAACTCCAAACTTTGAA+TGG | 0.459814 | 1.2:+83279073 | None:intergenic |
| TAATGATAACACGCTGATAA+GGG | 0.464492 | 1.2:-83277361 | MS.gene065031:CDS |
| GCAGTTCACTCTGAAACATC+TGG | 0.476823 | 1.2:-83277258 | MS.gene065031:CDS |
| GACGTGATGTGGAAATCATC+AGG | 0.480749 | 1.2:-83279188 | MS.gene065031:CDS |
| ATTTCCACATCACGTCCTGC+AGG | 0.480920 | 1.2:+83279195 | None:intergenic |
| ATCCAATGTGCCACTAATCC+AGG | 0.481177 | 1.2:-83278173 | MS.gene065031:CDS |
| ACATCACGTCCTGCAGGGTC+AGG | 0.483921 | 1.2:+83279201 | None:intergenic |
| TTTAGATATTGTAGTTGGGA+TGG | 0.486564 | 1.2:+83279105 | None:intergenic |
| TCGATATTCTTGTTGGATGT+AGG | 0.488103 | 1.2:+83279671 | None:intergenic |
| TAATAGAGAAATTGCTGAGA+AGG | 0.492113 | 1.2:-83278474 | MS.gene065031:CDS |
| CAACTTTACCGTGCTTTCAA+AGG | 0.494780 | 1.2:-83280634 | MS.gene065031:intron |
| TTGTCCAAATATTCAGTGAA+AGG | 0.504472 | 1.2:-83278394 | MS.gene065031:CDS |
| CAGTAAAGAATGAAGCTTCA+GGG | 0.507933 | 1.2:-83278223 | MS.gene065031:CDS |
| CTTTGGATGCCTGACCCTGC+AGG | 0.523684 | 1.2:-83279210 | MS.gene065031:CDS |
| AGAGGAGCTTTCGAAACGCT+TGG | 0.524295 | 1.2:-83279637 | MS.gene065031:CDS |
| TGAAGTCAAATCAAACACTT+CGG | 0.531066 | 1.2:-83279043 | MS.gene065031:CDS |
| CTGAAACATCTGGCAACTAC+AGG | 0.542743 | 1.2:-83277248 | MS.gene065031:CDS |
| ACCTCAGGGCCTTCATGGCG+AGG | 0.545086 | 1.2:+83278497 | None:intergenic |
| AGTTGCATCGCATCATCTCT+AGG | 0.551159 | 1.2:+83280652 | None:intergenic |
| CGCATCATCTCTAGGAGAAG+GGG | 0.552806 | 1.2:+83280660 | None:intergenic |
| TCGCATCATCTCTAGGAGAA+GGG | 0.556950 | 1.2:+83280659 | None:intergenic |
| TTCCTGGATTAGTGGCACAT+TGG | 0.563028 | 1.2:+83278171 | None:intergenic |
| CATCAGGAAGTCTCTAGTTG+TGG | 0.566789 | 1.2:-83279172 | MS.gene065031:CDS |
| ATCGCATCATCTCTAGGAGA+AGG | 0.567055 | 1.2:+83280658 | None:intergenic |
| GCAAAGGTTCTCTACAAAGC+GGG | 0.570145 | 1.2:-83278449 | MS.gene065031:CDS |
| GTAAGTACCCCTCGCCATGA+AGG | 0.571633 | 1.2:-83278506 | MS.gene065031:CDS |
| GTAGAAGAAGATGGCTACAC+TGG | 0.572744 | 1.2:-83280698 | None:intergenic |
| CCTCAGGGCCTTCATGGCGA+GGG | 0.575114 | 1.2:+83278498 | None:intergenic |
| TGCAAAGGTTCTCTACAAAG+CGG | 0.594581 | 1.2:-83278450 | MS.gene065031:CDS |
| CAATTTCTCTATTAACCTCA+GGG | 0.596064 | 1.2:+83278483 | None:intergenic |
| GTATGGTCACTCATTGAAGA+AGG | 0.597830 | 1.2:-83278327 | MS.gene065031:intron |
| AGAGGGTACCTTTGAAAGCA+CGG | 0.601480 | 1.2:+83280626 | None:intergenic |
| TGACCCTGCAGGACGTGATG+TGG | 0.603910 | 1.2:-83279199 | MS.gene065031:CDS |
| AATTGCTGAGAAGGATGCAA+AGG | 0.621549 | 1.2:-83278465 | MS.gene065031:CDS |
| CTCAGGGCCTTCATGGCGAG+GGG | 0.635020 | 1.2:+83278499 | None:intergenic |
| GTATTGTATAAGGCAACGAA+AGG | 0.636745 | 1.2:-83277393 | MS.gene065031:CDS |
| AAGTCAAATCAAACACTTCG+GGG | 0.641575 | 1.2:-83279041 | MS.gene065031:CDS |
| TTTCCACATCACGTCCTGCA+GGG | 0.641940 | 1.2:+83279196 | None:intergenic |
| CCCTCGCCATGAAGGCCCTG+AGG | 0.663399 | 1.2:-83278498 | MS.gene065031:CDS |
| CGCTTGGTTTCGGAGCTGAG+TGG | 0.675769 | 1.2:-83279621 | MS.gene065031:CDS |
| ACTGACTGCAGCCAAATGTG+CGG | 0.677644 | 1.2:+83278367 | None:intergenic |
| AGTGCGTGAACAGATTACTT+CGG | 0.681370 | 1.2:+83279128 | None:intergenic |
| TGATAAGGGTAATTGTAACA+AGG | 0.683491 | 1.2:-83277347 | MS.gene065031:CDS |
| GCATCATCTCTAGGAGAAGG+GGG | 0.685619 | 1.2:+83280661 | None:intergenic |
| AAAGCGGGTGAAAAGAAACT+CGG | 0.691984 | 1.2:-83278434 | MS.gene065031:CDS |
| AGTCAAATCAAACACTTCGG+GGG | 0.699436 | 1.2:-83279040 | MS.gene065031:CDS |
| ATATCGAACAACATACTCAG+AGG | 0.713202 | 1.2:-83279655 | MS.gene065031:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAATTTTATAAATGATT+AGG | + | chr1.2:83277769-83277788 | None:intergenic | 10.0% |
| !!! | TTCAATTTTATAAATGATTA+GGG | + | chr1.2:83277768-83277787 | None:intergenic | 10.0% |
| !! | ATAGAATTAGAATGAAATAA+AGG | + | chr1.2:83278136-83278155 | None:intergenic | 15.0% |
| !! | TCTTTATACAAAGAATATTT+CGG | + | chr1.2:83278073-83278092 | None:intergenic | 15.0% |
| !! | TTTATTTCATTCTAATTCTA+TGG | - | chr1.2:83278135-83278154 | MS.gene065031:intron | 15.0% |
| !!! | AATTCATTAAAATTTTGTGT+GGG | - | chr1.2:83280120-83280139 | MS.gene065031:intron | 15.0% |
| !!! | ACACAAAATTTTAATGAATT+AGG | + | chr1.2:83280120-83280139 | None:intergenic | 15.0% |
| !!! | ATTTAAATTTGTGTAACTTT+TGG | - | chr1.2:83280185-83280204 | MS.gene065031:intron | 15.0% |
| !!! | TAATTCATTAAAATTTTGTG+TGG | - | chr1.2:83280119-83280138 | MS.gene065031:intron | 15.0% |
| !! | AAATAACAGAAATTTAGAGA+TGG | - | chr1.2:83279027-83279046 | MS.gene065031:intron | 20.0% |
| !! | AGAGATGGAAAAAATAAAAT+TGG | + | chr1.2:83279101-83279120 | None:intergenic | 20.0% |
| !! | GGAAAATTAAGACATTTAAA+AGG | + | chr1.2:83280445-83280464 | None:intergenic | 20.0% |
| !! | TATAATCAGAAGAATATGAT+AGG | + | chr1.2:83278974-83278993 | None:intergenic | 20.0% |
| !! | TTAGATGAAAAATACTAATG+TGG | + | chr1.2:83277996-83278015 | None:intergenic | 20.0% |
| !! | TTCTAGATTCAAAATGTTAA+AGG | - | chr1.2:83279184-83279203 | MS.gene065031:CDS | 20.0% |
| !! | TTGTCAAACTTAATATTACA+AGG | - | chr1.2:83277682-83277701 | MS.gene065031:intron | 20.0% |
| !!! | AAACAAGTTTTTTGCATAAA+TGG | + | chr1.2:83279357-83279376 | None:intergenic | 20.0% |
| !!! | AATATACAAATTTTGTGCAT+AGG | + | chr1.2:83280466-83280485 | None:intergenic | 20.0% |
| !!! | TTCAACTTTTTCTGATAATA+AGG | - | chr1.2:83279136-83279155 | MS.gene065031:CDS | 20.0% |
| ! | AATGAGTTAGCTAATACATT+TGG | + | chr1.2:83280168-83280187 | None:intergenic | 25.0% |
| ! | AGAATGAAATAAAGGTTTCA+TGG | + | chr1.2:83278128-83278147 | None:intergenic | 25.0% |
| ! | ATAACAACAGAAATTAGAGA+TGG | + | chr1.2:83279116-83279135 | None:intergenic | 25.0% |
| ! | ATGACAAATTAGTCACATTA+TGG | - | chr1.2:83278943-83278962 | MS.gene065031:intron | 25.0% |
| ! | CATTATCATGAAAGCAATAA+AGG | + | chr1.2:83279276-83279295 | None:intergenic | 25.0% |
| ! | CTAATTTCATTCCACAAAAT+CGG | - | chr1.2:83277434-83277453 | MS.gene065031:intron | 25.0% |
| ! | CTACTACTACTACAATATTT+AGG | + | chr1.2:83277554-83277573 | None:intergenic | 25.0% |
| ! | CTCTTATTAGAAATAAGAGA+AGG | + | chr1.2:83280056-83280075 | None:intergenic | 25.0% |
| ! | GAAATAAGAGAAGGATAAAA+AGG | + | chr1.2:83280047-83280066 | None:intergenic | 25.0% |
| ! | GACTGAAAATTGCATTAATT+TGG | - | chr1.2:83277819-83277838 | MS.gene065031:intron | 25.0% |
| ! | GTATAAAGAGATTACTTGTA+AGG | - | chr1.2:83278084-83278103 | MS.gene065031:intron | 25.0% |
| ! | GTCTCAAGTTTATAAAACAA+AGG | - | chr1.2:83279308-83279327 | MS.gene065031:intron | 25.0% |
| ! | GTTATTGAACACAAAAATTG+TGG | + | chr1.2:83279826-83279845 | None:intergenic | 25.0% |
| ! | TCTTATTATCATGACATGTA+TGG | - | chr1.2:83279556-83279575 | MS.gene065031:intron | 25.0% |
| ! | TTAAATCATAGACAGTTCAT+AGG | - | chr1.2:83279211-83279230 | MS.gene065031:CDS | 25.0% |
| !! | AAAAAGTGTACTTCAATATG+TGG | - | chr1.2:83278028-83278047 | MS.gene065031:intron | 25.0% |
| !! | AGAGAGTACGTAATATAAAA+AGG | + | chr1.2:83277397-83277416 | None:intergenic | 25.0% |
| !! | TCAACTTTTTATAGTAGTGT+CGG | + | chr1.2:83279008-83279027 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAGATATTGTAGT+TGG | + | chr1.2:83278803-83278822 | None:intergenic | 25.0% |
| !!! | CTATTTATAGACTCACTTTT+AGG | + | chr1.2:83277491-83277510 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGATATTGTAGTT+GGG | + | chr1.2:83278802-83278821 | None:intergenic | 25.0% |
| !!! | CTTCTCTTATTTCTAATAAG+AGG | - | chr1.2:83280054-83280073 | MS.gene065031:intron | 25.0% |
| AAGACATTTAAAAGGTTCTC+TGG | + | chr1.2:83280437-83280456 | None:intergenic | 30.0% | |
| AATCAGAAGAATATGATAGG+AGG | + | chr1.2:83278971-83278990 | None:intergenic | 30.0% | |
| AATTTGTCATGTGATGACTA+AGG | + | chr1.2:83278933-83278952 | None:intergenic | 30.0% | |
| ATACCGTATACGTTGAATAA+TGG | + | chr1.2:83277735-83277754 | None:intergenic | 30.0% | |
| ATCCATTTATAGATGTGAGA+AGG | + | chr1.2:83277620-83277639 | None:intergenic | 30.0% | |
| ATGTTGTTCGATATTCTTGT+TGG | + | chr1.2:83278239-83278258 | None:intergenic | 30.0% | |
| CAATTTCTCTATTAACCTCA+GGG | + | chr1.2:83279420-83279439 | None:intergenic | 30.0% | |
| CAGTTATACCATTCAAAGTT+TGG | - | chr1.2:83278819-83278838 | MS.gene065031:intron | 30.0% | |
| GATAAACTCCAAACTTTGAA+TGG | + | chr1.2:83278830-83278849 | None:intergenic | 30.0% | |
| TAATAGAGAAATTGCTGAGA+AGG | - | chr1.2:83279426-83279445 | MS.gene065031:intron | 30.0% | |
| TAATGATAACACGCTGATAA+GGG | - | chr1.2:83280539-83280558 | MS.gene065031:intron | 30.0% | |
| TAGCCATTATTCAACGTATA+CGG | - | chr1.2:83277729-83277748 | MS.gene065031:intron | 30.0% | |
| TCCATTTATAGATGTGAGAA+GGG | + | chr1.2:83277619-83277638 | None:intergenic | 30.0% | |
| TGAAGTCAAATCAAACACTT+CGG | - | chr1.2:83278857-83278876 | MS.gene065031:intron | 30.0% | |
| TGATAAGGGTAATTGTAACA+AGG | - | chr1.2:83280553-83280572 | MS.gene065031:intron | 30.0% | |
| TGTAGATTAGTACATTAGCA+TGG | - | chr1.2:83279960-83279979 | MS.gene065031:intron | 30.0% | |
| TTCTAATTCTATGGTTTCAC+AGG | - | chr1.2:83278144-83278163 | MS.gene065031:intron | 30.0% | |
| TTGTATCAGTGTTTCATACT+TGG | - | chr1.2:83280401-83280420 | MS.gene065031:intron | 30.0% | |
| TTGTCCAAATATTCAGTGAA+AGG | - | chr1.2:83279506-83279525 | MS.gene065031:intron | 30.0% | |
| TTTAGATATTGTAGTTGGGA+TGG | + | chr1.2:83278798-83278817 | None:intergenic | 30.0% | |
| TTTCAAGCTGAAATCATATC+AGG | - | chr1.2:83279654-83279673 | MS.gene065031:CDS | 30.0% | |
| ! | AAAATACTTTCCTGGATTAG+TGG | + | chr1.2:83279740-83279759 | None:intergenic | 30.0% |
| ! | ATTTGTGTAACTTTTGGTCA+AGG | - | chr1.2:83280191-83280210 | MS.gene065031:intron | 30.0% |
| ! | CGATTTTGTGGAATGAAATT+AGG | + | chr1.2:83277436-83277455 | None:intergenic | 30.0% |
| !!! | AGATCTGCATTTTTTTTGTG+AGG | - | chr1.2:83277871-83277890 | MS.gene065031:intron | 30.0% |
| !!! | TTTTTTTTGTGAGGAACAAG+AGG | - | chr1.2:83277880-83277899 | MS.gene065031:intron | 30.0% |
| AAAACTTGATCTGCTCTGTA+TGG | + | chr1.2:83278562-83278581 | None:intergenic | 35.0% | |
| AAGTCAAATCAAACACTTCG+GGG | - | chr1.2:83278859-83278878 | MS.gene065031:intron | 35.0% | |
| AATGAAGCTTCAGGGAATTT+CGG | - | chr1.2:83279685-83279704 | MS.gene065031:CDS | 35.0% | |
| AATTCGAATATCAAACCACC+AGG | + | chr1.2:83277657-83277676 | None:intergenic | 35.0% | |
| ACCCTTCTCACATCTATAAA+TGG | - | chr1.2:83277615-83277634 | MS.gene065031:intron | 35.0% | |
| ACCTTTGCAAAATACTTTCC+TGG | + | chr1.2:83279748-83279767 | None:intergenic | 35.0% | |
| AGGCAGGAAATAGTTATGAA+AGG | - | chr1.2:83279864-83279883 | MS.gene065031:intron | 35.0% | |
| ATAAGGCAACGAAAGGTTTA+GGG | - | chr1.2:83280514-83280533 | MS.gene065031:intron | 35.0% | |
| ATAATGGCTAAAAGTGAGTG+AGG | + | chr1.2:83277719-83277738 | None:intergenic | 35.0% | |
| ATATCGAACAACATACTCAG+AGG | - | chr1.2:83278245-83278264 | MS.gene065031:intron | 35.0% | |
| ATTCGAATATCAAACCACCA+GGG | + | chr1.2:83277656-83277675 | None:intergenic | 35.0% | |
| ATTTATAGATGTGAGAAGGG+TGG | + | chr1.2:83277616-83277635 | None:intergenic | 35.0% | |
| CAACCCTAAAAAAAGTCACA+AGG | + | chr1.2:83277352-83277371 | None:intergenic | 35.0% | |
| CACTCCTTTCACTGAATATT+TGG | + | chr1.2:83279513-83279532 | None:intergenic | 35.0% | |
| CAGTAAAGAATGAAGCTTCA+GGG | - | chr1.2:83279677-83279696 | MS.gene065031:CDS | 35.0% | |
| CTAATGATAACACGCTGATA+AGG | - | chr1.2:83280538-83280557 | MS.gene065031:intron | 35.0% | |
| GAAGTCAAATCAAACACTTC+GGG | - | chr1.2:83278858-83278877 | MS.gene065031:intron | 35.0% | |
| GCAATTTCTCTATTAACCTC+AGG | + | chr1.2:83279421-83279440 | None:intergenic | 35.0% | |
| GGCAGGAAATAGTTATGAAA+GGG | - | chr1.2:83279865-83279884 | MS.gene065031:intron | 35.0% | |
| GTATTGTATAAGGCAACGAA+AGG | - | chr1.2:83280507-83280526 | MS.gene065031:intron | 35.0% | |
| TAATGGCTAAAAGTGAGTGA+GGG | + | chr1.2:83277718-83277737 | None:intergenic | 35.0% | |
| TAGTATACACTCAACAACCA+TGG | + | chr1.2:83280233-83280252 | None:intergenic | 35.0% | |
| TATAAGGCAACGAAAGGTTT+AGG | - | chr1.2:83280513-83280532 | MS.gene065031:intron | 35.0% | |
| TCGATATTCTTGTTGGATGT+AGG | + | chr1.2:83278232-83278251 | None:intergenic | 35.0% | |
| TGCAAAAGTTGAAGTGAAGA+TGG | + | chr1.2:83279773-83279792 | None:intergenic | 35.0% | |
| TGTATGGTCTTTCATTGCAA+GGG | + | chr1.2:83278546-83278565 | None:intergenic | 35.0% | |
| TTCTATGGTTTCACAGGATT+TGG | - | chr1.2:83278150-83278169 | MS.gene065031:intron | 35.0% | |
| ! | AACCATGCAGGTATTGTATA+AGG | - | chr1.2:83280497-83280516 | MS.gene065031:intron | 35.0% |
| ! | ACTTTTCTTCTCGCACTTTT+GGG | - | chr1.2:83280675-83280694 | MS.gene065031:CDS | 35.0% |
| ! | AGTTCATAGGTTTTCCTCAT+AGG | - | chr1.2:83279224-83279243 | MS.gene065031:CDS | 35.0% |
| ! | CAATATGTGGTTCTATTCCA+GGG | - | chr1.2:83278041-83278060 | MS.gene065031:intron | 35.0% |
| ! | CACAAAATCGGCTTATTCTT+AGG | - | chr1.2:83277446-83277465 | MS.gene065031:intron | 35.0% |
| ! | CACACCATAAGAGTTGATTT+CGG | - | chr1.2:83277523-83277542 | MS.gene065031:intron | 35.0% |
| ! | TCAATATGTGGTTCTATTCC+AGG | - | chr1.2:83278040-83278059 | MS.gene065031:intron | 35.0% |
| ! | TGATTAAAAGCATGCAACCT+TGG | + | chr1.2:83277322-83277341 | None:intergenic | 35.0% |
| ! | TGCATGCTTTTAATCATGCA+TGG | - | chr1.2:83277326-83277345 | MS.gene065031:CDS | 35.0% |
| !! | CTAAGAATAAGCCGATTTTG+TGG | + | chr1.2:83277448-83277467 | None:intergenic | 35.0% |
| !! | CTTTTTATAGTAGTGTCGGA+TGG | + | chr1.2:83279004-83279023 | None:intergenic | 35.0% |
| !!! | ATGGCCTTGTGACTTTTTTT+AGG | - | chr1.2:83277345-83277364 | MS.gene065031:CDS | 35.0% |
| !!! | TCCAGGAAAGTATTTTGCAA+AGG | - | chr1.2:83279744-83279763 | MS.gene065031:intron | 35.0% |
| !!! | TGGCCTTGTGACTTTTTTTA+GGG | - | chr1.2:83277346-83277365 | MS.gene065031:CDS | 35.0% |
| !!! | TGTGACTTTTTTTAGGGTTG+TGG | - | chr1.2:83277352-83277371 | MS.gene065031:CDS | 35.0% |
| AAAGCGGGTGAAAAGAAACT+CGG | - | chr1.2:83279466-83279485 | MS.gene065031:intron | 40.0% | |
| AATGGCTAAAAGTGAGTGAG+GGG | + | chr1.2:83277717-83277736 | None:intergenic | 40.0% | |
| AATTGCTGAGAAGGATGCAA+AGG | - | chr1.2:83279435-83279454 | MS.gene065031:intron | 40.0% | |
| ACACTCAACAACCATGGTAA+TGG | + | chr1.2:83280227-83280246 | None:intergenic | 40.0% | |
| AGAGAGAGAGATAGAGAAAG+AGG | + | chr1.2:83277295-83277314 | None:intergenic | 40.0% | |
| AGTCAAATCAAACACTTCGG+GGG | - | chr1.2:83278860-83278879 | MS.gene065031:intron | 40.0% | |
| AGTGCGTGAACAGATTACTT+CGG | + | chr1.2:83278775-83278794 | None:intergenic | 40.0% | |
| CAACTTTACCGTGCTTTCAA+AGG | - | chr1.2:83277266-83277285 | MS.gene065031:CDS | 40.0% | |
| CAATACCTGCATGGTTACAA+AGG | + | chr1.2:83280493-83280512 | None:intergenic | 40.0% | |
| CTGTATGGTCTTTCATTGCA+AGG | + | chr1.2:83278547-83278566 | None:intergenic | 40.0% | |
| GAATATTTCGGATAATGCCC+TGG | + | chr1.2:83278061-83278080 | None:intergenic | 40.0% | |
| GAGAGAGAGATAGAGAAAGA+GGG | + | chr1.2:83277294-83277313 | None:intergenic | 40.0% | |
| GCAGTAAAGAATGAAGCTTC+AGG | - | chr1.2:83279676-83279695 | MS.gene065031:CDS | 40.0% | |
| GGCTTATTCTTAGGCTCATT+GGG | - | chr1.2:83277455-83277474 | MS.gene065031:intron | 40.0% | |
| GTATGGTCACTCATTGAAGA+AGG | - | chr1.2:83279573-83279592 | MS.gene065031:intron | 40.0% | |
| GTGGCATATAACCATTACCA+TGG | - | chr1.2:83280213-83280232 | MS.gene065031:intron | 40.0% | |
| GTGGGCAATTTGTAAGAGTA+GGG | - | chr1.2:83280138-83280157 | MS.gene065031:intron | 40.0% | |
| TAACGATGTATACGTGTGAG+TGG | - | chr1.2:83280363-83280382 | MS.gene065031:intron | 40.0% | |
| TAGGCTCATTGGGTTTGATA+AGG | - | chr1.2:83277465-83277484 | MS.gene065031:intron | 40.0% | |
| TGAGCCGAAATCAACTCTTA+TGG | + | chr1.2:83277530-83277549 | None:intergenic | 40.0% | |
| TGCAAAGGTTCTCTACAAAG+CGG | - | chr1.2:83279450-83279469 | MS.gene065031:intron | 40.0% | |
| TGCCTTATACAATACCTGCA+TGG | + | chr1.2:83280502-83280521 | None:intergenic | 40.0% | |
| TGTGGGCAATTTGTAAGAGT+AGG | - | chr1.2:83280137-83280156 | MS.gene065031:intron | 40.0% | |
| TTCAGACTGCTGTTCTACTT+TGG | - | chr1.2:83278673-83278692 | MS.gene065031:intron | 40.0% | |
| TTGTGAGGAACAAGAGGAAA+TGG | - | chr1.2:83277886-83277905 | MS.gene065031:intron | 40.0% | |
| ! | CAAAGTTTTCGCATCCTATG+AGG | + | chr1.2:83279241-83279260 | None:intergenic | 40.0% |
| ! | GACTTTTCTTCTCGCACTTT+TGG | - | chr1.2:83280674-83280693 | MS.gene065031:CDS | 40.0% |
| ! | TGTGTAACTTTTGGTCAAGG+TGG | - | chr1.2:83280194-83280213 | MS.gene065031:intron | 40.0% |
| AACCCTATCCACGATCTGTT+TGG | - | chr1.2:83277576-83277595 | MS.gene065031:intron | 45.0% | |
| AATCCGCCTCTAAGTAGTAG+AGG | - | chr1.2:83279071-83279090 | MS.gene065031:CDS | 45.0% | |
| AGCAATGACCAAACAGATCG+TGG | + | chr1.2:83277587-83277606 | None:intergenic | 45.0% | |
| AGTTGCATCGCATCATCTCT+AGG | + | chr1.2:83277251-83277270 | None:intergenic | 45.0% | |
| ATCCGCCTCTAAGTAGTAGA+GGG | - | chr1.2:83279072-83279091 | MS.gene065031:CDS | 45.0% | |
| ATTGCAAGGGTTGGATTGAC+TGG | + | chr1.2:83278533-83278552 | None:intergenic | 45.0% | |
| CATCAGGAAGTCTCTAGTTG+TGG | - | chr1.2:83278728-83278747 | MS.gene065031:intron | 45.0% | |
| CGGCTTATTCTTAGGCTCAT+TGG | - | chr1.2:83277454-83277473 | MS.gene065031:intron | 45.0% | |
| CTGAAACATCTGGCAACTAC+AGG | - | chr1.2:83280652-83280671 | MS.gene065031:CDS | 45.0% | |
| GACCAAACAGATCGTGGATA+GGG | + | chr1.2:83277581-83277600 | None:intergenic | 45.0% | |
| GACGTGATGTGGAAATCATC+AGG | - | chr1.2:83278712-83278731 | MS.gene065031:intron | 45.0% | |
| GCAAAGGTTCTCTACAAAGC+GGG | - | chr1.2:83279451-83279470 | MS.gene065031:intron | 45.0% | |
| GCTTTCGAAACGCTTGGTTT+CGG | - | chr1.2:83278269-83278288 | MS.gene065031:intron | 45.0% | |
| TATCTCTCTCTCTCTCTCCA+AGG | - | chr1.2:83277302-83277321 | MS.gene065031:CDS | 45.0% | |
| TATTAACCTCAGGGCCTTCA+TGG | + | chr1.2:83279411-83279430 | None:intergenic | 45.0% | |
| TCACACCTTTGTAACCATGC+AGG | - | chr1.2:83280485-83280504 | MS.gene065031:intron | 45.0% | |
| TCTGTTTGGTCATTGCTACC+AGG | - | chr1.2:83277590-83277609 | MS.gene065031:intron | 45.0% | |
| TGACCAAACAGATCGTGGAT+AGG | + | chr1.2:83277582-83277601 | None:intergenic | 45.0% | |
| TGGTCTTTCATTGCAAGGGT+TGG | + | chr1.2:83278542-83278561 | None:intergenic | 45.0% | |
| TTACTTCGGTAGCAGCTTCA+AGG | + | chr1.2:83278761-83278780 | None:intergenic | 45.0% | |
| ! | ACAGTGTGCTTGTGTTTTCG+AGG | - | chr1.2:83279844-83279863 | MS.gene065031:intron | 45.0% |
| ! | ATCCAATGTGCCACTAATCC+AGG | - | chr1.2:83279727-83279746 | MS.gene065031:CDS | 45.0% |
| ! | ATCGCATCATCTCTAGGAGA+AGG | + | chr1.2:83277245-83277264 | None:intergenic | 45.0% |
| ! | TCGCATCATCTCTAGGAGAA+GGG | + | chr1.2:83277244-83277263 | None:intergenic | 45.0% |
| !! | AGAGGGTACCTTTGAAAGCA+CGG | + | chr1.2:83277277-83277296 | None:intergenic | 45.0% |
| !! | GCAGTTCACTCTGAAACATC+TGG | - | chr1.2:83280642-83280661 | MS.gene065031:CDS | 45.0% |
| !! | TTCCTGGATTAGTGGCACAT+TGG | + | chr1.2:83279732-83279751 | None:intergenic | 45.0% |
| ACTGACTGCAGCCAAATGTG+CGG | + | chr1.2:83279536-83279555 | None:intergenic | 50.0% | |
| AGAGGAGCTTTCGAAACGCT+TGG | - | chr1.2:83278263-83278282 | MS.gene065031:intron | 50.0% | |
| ATTTCCACATCACGTCCTGC+AGG | + | chr1.2:83278708-83278727 | None:intergenic | 50.0% | |
| CACCCTCTACTACTTAGAGG+CGG | + | chr1.2:83279077-83279096 | None:intergenic | 50.0% | |
| CACTTCGGGGGATCTTCAAA+AGG | - | chr1.2:83278872-83278891 | MS.gene065031:intron | 50.0% | |
| CGGGGGATCTTCAAAAGGTA+AGG | - | chr1.2:83278877-83278896 | MS.gene065031:intron | 50.0% | |
| GGAGCTGAGTGGAAAGTTAG+AGG | - | chr1.2:83278290-83278309 | MS.gene065031:intron | 50.0% | |
| GGATATATGAAGCGTGACCC+TGG | - | chr1.2:83277636-83277655 | MS.gene065031:intron | 50.0% | |
| GGTCACCCTCTACTACTTAG+AGG | + | chr1.2:83279080-83279099 | None:intergenic | 50.0% | |
| TATATGAAGCGTGACCCTGG+TGG | - | chr1.2:83277639-83277658 | MS.gene065031:intron | 50.0% | |
| TTTCCACATCACGTCCTGCA+GGG | + | chr1.2:83278707-83278726 | None:intergenic | 50.0% | |
| ! | CGCATCATCTCTAGGAGAAG+GGG | + | chr1.2:83277243-83277262 | None:intergenic | 50.0% |
| ! | GCATCATCTCTAGGAGAAGG+GGG | + | chr1.2:83277242-83277261 | None:intergenic | 50.0% |
| ! | TCTCTAGGAGAAGGGGGAAA+TGG | + | chr1.2:83277236-83277255 | None:intergenic | 50.0% |
| !! | CGTGTGAGTGGAGTTTTGTC+TGG | - | chr1.2:83280375-83280394 | MS.gene065031:intron | 50.0% |
| !! | TGAAAGGAGTGCCGCACATT+TGG | - | chr1.2:83279522-83279541 | MS.gene065031:intron | 50.0% |
| !! | TGTGCTTGTGTTTTCGAGGC+AGG | - | chr1.2:83279848-83279867 | MS.gene065031:intron | 50.0% |
| CTAGGAGAAGGGGGAAATGG+AGG | + | chr1.2:83277233-83277252 | None:intergenic | 55.0% | |
| GACGAGTGCGATGTCTGACA+CGG | - | chr1.2:83280298-83280317 | MS.gene065031:intron | 55.0% | |
| GATGTCTGACACGGAAGACG+TGG | - | chr1.2:83280307-83280326 | MS.gene065031:intron | 55.0% | |
| GTAAGTACCCCTCGCCATGA+AGG | - | chr1.2:83279394-83279413 | MS.gene065031:intron | 55.0% | |
| GTGTCAGACATCGCACTCGT+CGG | + | chr1.2:83280299-83280318 | None:intergenic | 55.0% | |
| TAGATGTGAGAAGGGTGGCC+TGG | + | chr1.2:83277611-83277630 | None:intergenic | 55.0% | |
| ACATCACGTCCTGCAGGGTC+AGG | + | chr1.2:83278702-83278721 | None:intergenic | 60.0% | |
| CGCTTGGTTTCGGAGCTGAG+TGG | - | chr1.2:83278279-83278298 | MS.gene065031:intron | 60.0% | |
| CTTTGGATGCCTGACCCTGC+AGG | - | chr1.2:83278690-83278709 | MS.gene065031:intron | 60.0% | |
| TGACCCTGCAGGACGTGATG+TGG | - | chr1.2:83278701-83278720 | MS.gene065031:intron | 60.0% | |
| ACCTCAGGGCCTTCATGGCG+AGG | + | chr1.2:83279406-83279425 | None:intergenic | 65.0% | |
| CCTCAGGGCCTTCATGGCGA+GGG | + | chr1.2:83279405-83279424 | None:intergenic | 65.0% | |
| CTCAGGGCCTTCATGGCGAG+GGG | + | chr1.2:83279404-83279423 | None:intergenic | 65.0% | |
| CCCTCGCCATGAAGGCCCTG+AGG | - | chr1.2:83279402-83279421 | MS.gene065031:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 83277212 | 83280710 | 83277212 | ID=MS.gene065031 |
| chr1.2 | mRNA | 83277212 | 83280710 | 83277212 | ID=MS.gene065031.t1;Parent=MS.gene065031 |
| chr1.2 | exon | 83280635 | 83280710 | 83280635 | ID=MS.gene065031.t1.exon1;Parent=MS.gene065031.t1 |
| chr1.2 | CDS | 83280635 | 83280710 | 83280635 | ID=cds.MS.gene065031.t1;Parent=MS.gene065031.t1 |
| chr1.2 | exon | 83279611 | 83279756 | 83279611 | ID=MS.gene065031.t1.exon2;Parent=MS.gene065031.t1 |
| chr1.2 | CDS | 83279611 | 83279756 | 83279611 | ID=cds.MS.gene065031.t1;Parent=MS.gene065031.t1 |
| chr1.2 | exon | 83279029 | 83279244 | 83279029 | ID=MS.gene065031.t1.exon3;Parent=MS.gene065031.t1 |
| chr1.2 | CDS | 83279029 | 83279244 | 83279029 | ID=cds.MS.gene065031.t1;Parent=MS.gene065031.t1 |
| chr1.2 | exon | 83278328 | 83278543 | 83278328 | ID=MS.gene065031.t1.exon4;Parent=MS.gene065031.t1 |
| chr1.2 | CDS | 83278328 | 83278543 | 83278328 | ID=cds.MS.gene065031.t1;Parent=MS.gene065031.t1 |
| chr1.2 | exon | 83278157 | 83278246 | 83278157 | ID=MS.gene065031.t1.exon5;Parent=MS.gene065031.t1 |
| chr1.2 | CDS | 83278157 | 83278246 | 83278157 | ID=cds.MS.gene065031.t1;Parent=MS.gene065031.t1 |
| chr1.2 | exon | 83277212 | 83277415 | 83277212 | ID=MS.gene065031.t1.exon6;Parent=MS.gene065031.t1 |
| chr1.2 | CDS | 83277212 | 83277415 | 83277212 | ID=cds.MS.gene065031.t1;Parent=MS.gene065031.t1 |
| Gene Sequence |
| Protein sequence |
