Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065959.t1 | XP_003629838.2 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 3.10E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065959.t1 | Q9H2W6 | 39.3 | 135 | 70 | 4 | 86 | 215 | 136 | 263 | 5.5e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065959.t1 | G7L791 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 2.2e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31468 | MS.gene065959 | PPI |
| MS.gene065959 | MS.gene005399 | PPI |
| MS.gene065959 | MS.gene001687 | PPI |
| MS.gene065959 | MS.gene005865 | PPI |
| MS.gene065959 | MS.gene066059 | PPI |
| MS.gene065959 | MS.gene21110 | PPI |
| MS.gene065959 | MS.gene036564 | PPI |
| MS.gene065959 | MS.gene026968 | PPI |
| MS.gene065959 | MS.gene60861 | PPI |
| MS.gene065959 | MS.gene028903 | PPI |
| MS.gene065959 | MS.gene21227 | PPI |
| MS.gene34167 | MS.gene065959 | PPI |
| MS.gene065959 | MS.gene035256 | PPI |
| MS.gene21111 | MS.gene065959 | PPI |
| MS.gene065959 | MS.gene20938 | PPI |
| MS.gene065959 | MS.gene60589 | PPI |
| MS.gene065959 | MS.gene055808 | PPI |
| MS.gene065959 | MS.gene82915 | PPI |
| MS.gene065959 | MS.gene043435 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065959.t1 | MTR_8g087440 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 7.69e-172 | 472 |
| MS.gene065959.t1 | MTR_8g028485 | 96.943 | 229 | 7 | 0 | 1 | 229 | 1 | 229 | 9.85e-168 | 461 |
| MS.gene065959.t1 | MTR_7g117435 | 85.821 | 134 | 19 | 0 | 51 | 184 | 4 | 137 | 5.58e-78 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065959.t1 | AT1G14620 | 72.889 | 225 | 60 | 1 | 6 | 229 | 9 | 233 | 3.55e-123 | 349 |
| MS.gene065959.t1 | AT1G14620 | 72.472 | 178 | 48 | 1 | 6 | 182 | 9 | 186 | 1.68e-92 | 271 |
Find 43 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTGGTGATGCTTA+TGG | 0.132920 | 4.1:-13246202 | MS.gene065959:CDS |
| ATAAACATTAGGGTCAATTT+TGG | 0.146402 | 4.1:+13248370 | None:intergenic |
| TTCTCTTTGGTGATGCTTAT+GGG | 0.201628 | 4.1:-13246201 | MS.gene065959:CDS |
| CTTTAGGCTGAACAACAATA+TGG | 0.250918 | 4.1:+13245739 | None:intergenic |
| GATCCTGTCTGCTCTTCTTT+AGG | 0.268390 | 4.1:+13245723 | None:intergenic |
| TCTTGAAAAGCATAAACATT+AGG | 0.296449 | 4.1:+13248359 | None:intergenic |
| AGACTTTACCTTCTTCTCTT+TGG | 0.302982 | 4.1:-13246214 | MS.gene065959:CDS |
| CAGTACCAGCTCTGAGAAAA+TGG | 0.316816 | 4.1:-13248432 | MS.gene065959:CDS |
| CTTGAAAAGCATAAACATTA+GGG | 0.335207 | 4.1:+13248360 | None:intergenic |
| TCTGCCTTGAAATCAGTCTT+AGG | 0.355740 | 4.1:-13245804 | MS.gene065959:CDS |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 4.1:+13246976 | None:intergenic |
| ATCTCCTAAGACTGATTTCA+AGG | 0.411980 | 4.1:+13245800 | None:intergenic |
| GCAAATGTGAGGACTTTGTT+TGG | 0.413949 | 4.1:-13245399 | MS.gene065959:CDS |
| CAAATGTGAGGACTTTGTTT+GGG | 0.420934 | 4.1:-13245398 | MS.gene065959:CDS |
| GGTGACTAAGGATGAATTGA+TGG | 0.429874 | 4.1:-13245377 | MS.gene065959:CDS |
| CAGGATGAAGATGATGTCAT+TGG | 0.454517 | 4.1:-13248483 | None:intergenic |
| CCTCTTTAGGTCACTACAAA+GGG | 0.467960 | 4.1:-13246248 | MS.gene065959:intron |
| GGACTTTGTTTGGGTGACTA+AGG | 0.476258 | 4.1:-13245389 | MS.gene065959:CDS |
| TTTCACTGGCTAGGTTTCGA+TGG | 0.485464 | 4.1:-13247261 | MS.gene065959:intron |
| TTTAGGCTGAACAACAATAT+GGG | 0.490540 | 4.1:+13245740 | None:intergenic |
| TGCCACACAGGCTTTCCACT+TGG | 0.491497 | 4.1:+13246175 | None:intergenic |
| TGAAGATGATGTCATTGGTT+CGG | 0.499816 | 4.1:-13248478 | MS.gene065959:CDS |
| TCTCTTTGGTGATGCTTATG+GGG | 0.506698 | 4.1:-13246200 | MS.gene065959:CDS |
| AAGCATCACCAAAGAGAAGA+AGG | 0.518933 | 4.1:+13246206 | None:intergenic |
| GATCTGTCTAGAAATTCATC+AGG | 0.521123 | 4.1:+13247214 | None:intergenic |
| GCCTCTTTAGGTCACTACAA+AGG | 0.536519 | 4.1:-13246249 | MS.gene065959:intron |
| CGGCCACTCTTGATGAGGCG+AGG | 0.556081 | 4.1:-13248458 | MS.gene065959:CDS |
| CAGCCTAAAGAAGAGCAGAC+AGG | 0.565138 | 4.1:-13245726 | MS.gene065959:CDS |
| CACTGGCTAGGTTTCGATGG+CGG | 0.565281 | 4.1:-13247258 | MS.gene065959:intron |
| TGGTTCGGCCACTCTTGATG+AGG | 0.568234 | 4.1:-13248463 | MS.gene065959:CDS |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 4.1:+13246970 | None:intergenic |
| ATCAGAGGATACCATGCGTA+AGG | 0.591397 | 4.1:-13246131 | MS.gene065959:intron |
| TTCTAGACAGATCCGATGCA+AGG | 0.596915 | 4.1:-13247204 | MS.gene065959:intron |
| CTCCAAGTGGAAAGCCTGTG+TGG | 0.603277 | 4.1:-13246177 | MS.gene065959:CDS |
| TGAACAACAATATGGGCCAT+CGG | 0.626927 | 4.1:+13245747 | None:intergenic |
| GCTGTTTGAGAGATTGCCTG+TGG | 0.631922 | 4.1:-13248399 | MS.gene065959:CDS |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 4.1:-13246954 | MS.gene065959:intron |
| TAAGTACCCATACCTTGCAT+CGG | 0.633346 | 4.1:+13247192 | None:intergenic |
| AAGAATGTTCACCTTACGCA+TGG | 0.635771 | 4.1:+13246120 | None:intergenic |
| AATCCTCGCCTCATCAAGAG+TGG | 0.640945 | 4.1:+13248455 | None:intergenic |
| GTTCGACATTGGCAAATGTG+AGG | 0.661270 | 4.1:-13245410 | MS.gene065959:CDS |
| GATGCTTATGGGGCTCCAAG+TGG | 0.683285 | 4.1:-13246190 | MS.gene065959:CDS |
| CAATCTCTCAAACAGCACAG+AGG | 0.749554 | 4.1:+13248406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATAACTAAATTTTTAT+GGG | - | chr4.1:13246521-13246540 | MS.gene065959:intron | 10.0% |
| !!! | TCTTTAAAAAAAATTATCAA+TGG | + | chr4.1:13247482-13247501 | None:intergenic | 10.0% |
| !!! | TGCAATTTTTTTTATAAAAA+AGG | + | chr4.1:13247972-13247991 | None:intergenic | 10.0% |
| !!! | TTTATAACTAAATTTTTATG+GGG | - | chr4.1:13246522-13246541 | MS.gene065959:intron | 10.0% |
| !!! | AGTATTTGTATTTTACAAAT+TGG | + | chr4.1:13246169-13246188 | None:intergenic | 15.0% |
| !!! | GGTTTATAACTAAATTTTTA+TGG | - | chr4.1:13246520-13246539 | MS.gene065959:intron | 15.0% |
| !!! | TTTCAATATGTTATTTCTAT+CGG | - | chr4.1:13248174-13248193 | MS.gene065959:intron | 15.0% |
| !! | AAATGTTTCATTTCAATTTC+TGG | - | chr4.1:13246920-13246939 | MS.gene065959:intron | 20.0% |
| !! | AGAACAAGTTAATAATTCAT+TGG | + | chr4.1:13247025-13247044 | None:intergenic | 20.0% |
| !!! | ATCAAAAGTAAAATGGATTT+CGG | - | chr4.1:13245557-13245576 | MS.gene065959:intron | 20.0% |
| !!! | CTTTCAAATACATATTTTGT+CGG | - | chr4.1:13248029-13248048 | MS.gene065959:intron | 20.0% |
| !!! | TAAAAGCATCAAAAGTAAAA+TGG | - | chr4.1:13245550-13245569 | MS.gene065959:intron | 20.0% |
| !!! | TCTTTTCTTCTTTTTTTTGA+AGG | - | chr4.1:13247088-13247107 | MS.gene065959:intron | 20.0% |
| !!! | TGTCCACATTTTTTAAAAAA+GGG | - | chr4.1:13246247-13246266 | MS.gene065959:intron | 20.0% |
| !!! | TGTTTAAGTTATGAAAGAAA+TGG | - | chr4.1:13246718-13246737 | MS.gene065959:intron | 20.0% |
| !!! | TTACCCTTTTTTAAAAAATG+TGG | + | chr4.1:13246253-13246272 | None:intergenic | 20.0% |
| !!! | TTCTATCATAAACCATATTT+TGG | + | chr4.1:13246056-13246075 | None:intergenic | 20.0% |
| !!! | TTGTCCACATTTTTTAAAAA+AGG | - | chr4.1:13246246-13246265 | MS.gene065959:intron | 20.0% |
| ! | AACATTGATCAAAGTGATTA+TGG | - | chr4.1:13245650-13245669 | MS.gene065959:intron | 25.0% |
| ! | AAGATATAGGAAATAAGAAG+GGG | + | chr4.1:13247722-13247741 | None:intergenic | 25.0% |
| ! | ACACGATCAAAAAACAATAA+AGG | + | chr4.1:13247201-13247220 | None:intergenic | 25.0% |
| ! | AGAAAAAGATGGAAAAAATG+AGG | - | chr4.1:13246345-13246364 | MS.gene065959:intron | 25.0% |
| ! | AGAATTTCTGACAAAAGATT+TGG | + | chr4.1:13248345-13248364 | None:intergenic | 25.0% |
| ! | AGATTGTCATCAGATATTTA+AGG | - | chr4.1:13247261-13247280 | MS.gene065959:intron | 25.0% |
| ! | AGTTTGTCAAAAGAAAAAGA+TGG | - | chr4.1:13246334-13246353 | MS.gene065959:intron | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | - | chr4.1:13246777-13246796 | MS.gene065959:intron | 25.0% |
| ! | ATTATCAATGGTAAAGCAAA+TGG | + | chr4.1:13247470-13247489 | None:intergenic | 25.0% |
| ! | GAAGATATAGGAAATAAGAA+GGG | + | chr4.1:13247723-13247742 | None:intergenic | 25.0% |
| ! | GAATTTCTGACAAAAGATTT+GGG | + | chr4.1:13248344-13248363 | None:intergenic | 25.0% |
| ! | TAATGAATTCGACCAAAATA+TGG | - | chr4.1:13246041-13246060 | MS.gene065959:intron | 25.0% |
| ! | TCTATTATTATCTAAGAGAC+AGG | + | chr4.1:13247399-13247418 | None:intergenic | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | - | chr4.1:13246778-13246797 | MS.gene065959:intron | 25.0% |
| ! | TGAGAAATATATCAATGTGA+GGG | - | chr4.1:13247354-13247373 | MS.gene065959:intron | 25.0% |
| ! | TGCTGTTAATATTACATAGT+TGG | - | chr4.1:13246391-13246410 | MS.gene065959:intron | 25.0% |
| ! | TTTGTCTATTCAGTGAAATT+TGG | - | chr4.1:13246222-13246241 | MS.gene065959:CDS | 25.0% |
| !! | AGAAAAAGTATATGAATCAG+AGG | - | chr4.1:13247660-13247679 | MS.gene065959:intron | 25.0% |
| !! | ATAAACATTAGGGTCAATTT+TGG | + | chr4.1:13245439-13245458 | None:intergenic | 25.0% |
| !! | CTTGAAAAGCATAAACATTA+GGG | + | chr4.1:13245449-13245468 | None:intergenic | 25.0% |
| !! | TAAACATTAGGGTCAATTTT+GGG | + | chr4.1:13245438-13245457 | None:intergenic | 25.0% |
| !! | TCTTGAAAAGCATAAACATT+AGG | + | chr4.1:13245450-13245469 | None:intergenic | 25.0% |
| !!! | ATAAGTCAGAAGTATTGAAA+AGG | + | chr4.1:13248279-13248298 | None:intergenic | 25.0% |
| !!! | ATCTTTTAAGGTATGTTTGT+AGG | - | chr4.1:13248109-13248128 | MS.gene065959:intron | 25.0% |
| !!! | GTGTTTTAGCTTTGAAATAT+TGG | - | chr4.1:13247217-13247236 | MS.gene065959:CDS | 25.0% |
| !!! | TCTGATTCATATACTTTTTC+TGG | + | chr4.1:13247661-13247680 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTTTTTGAAGGA+AGG | - | chr4.1:13247092-13247111 | MS.gene065959:intron | 25.0% |
| !!! | TTTCTTTCTCTTTTCTAAGA+TGG | - | chr4.1:13246303-13246322 | MS.gene065959:intron | 25.0% |
| !!! | TTTTCTGAAAATGACTTTGT+AGG | - | chr4.1:13248210-13248229 | MS.gene065959:intron | 25.0% |
| AAAATAGACTTAGGTGGTTT+GGG | - | chr4.1:13245915-13245934 | MS.gene065959:intron | 30.0% | |
| AAAATTGTTTACTTTCCAGG+GGG | - | chr4.1:13246780-13246799 | MS.gene065959:intron | 30.0% | |
| AAATACCACACCAAAGAAAA+AGG | + | chr4.1:13247125-13247144 | None:intergenic | 30.0% | |
| AAATGATCAGTCTGCTAAAT+TGG | + | chr4.1:13246884-13246903 | None:intergenic | 30.0% | |
| ACTACAAATGTTCTTAAGCA+AGG | - | chr4.1:13247145-13247164 | MS.gene065959:intron | 30.0% | |
| AGAGACATGAAAACCTAATT+AGG | - | chr4.1:13247444-13247463 | MS.gene065959:intron | 30.0% | |
| ATGAAAATATTAGAGAGTCG+AGG | - | chr4.1:13245865-13245884 | MS.gene065959:intron | 30.0% | |
| ATTGATCAAAGTGATTATGG+TGG | - | chr4.1:13245653-13245672 | MS.gene065959:intron | 30.0% | |
| ATTTCACTGAATAGACAAAC+TGG | + | chr4.1:13246221-13246240 | None:intergenic | 30.0% | |
| CACAACCAAACAAATTGAAA+AGG | + | chr4.1:13248236-13248255 | None:intergenic | 30.0% | |
| CATGATAGTAGATGAAAAGA+AGG | + | chr4.1:13246760-13246779 | None:intergenic | 30.0% | |
| CTATAGATATATCATCGCTA+AGG | + | chr4.1:13247765-13247784 | None:intergenic | 30.0% | |
| CTGAGAAATATATCAATGTG+AGG | - | chr4.1:13247353-13247372 | MS.gene065959:intron | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | - | chr4.1:13246779-13246798 | MS.gene065959:intron | 30.0% | |
| GGAAGATATAGGAAATAAGA+AGG | + | chr4.1:13247724-13247743 | None:intergenic | 30.0% | |
| GTTGTTGCTAATACAATTTC+AGG | - | chr4.1:13246134-13246153 | MS.gene065959:CDS | 30.0% | |
| TGTTGTACTTACTGATATTG+TGG | - | chr4.1:13246489-13246508 | MS.gene065959:intron | 30.0% | |
| TTAACAACACTGGAAGATAT+AGG | + | chr4.1:13247735-13247754 | None:intergenic | 30.0% | |
| TTGCAGATTACAGAAAATAG+TGG | + | chr4.1:13247918-13247937 | None:intergenic | 30.0% | |
| TTTAGGCTGAACAACAATAT+GGG | + | chr4.1:13248069-13248088 | None:intergenic | 30.0% | |
| ! | AAATTTTTATGGGGTTTCAC+TGG | - | chr4.1:13246531-13246550 | MS.gene065959:intron | 30.0% |
| ! | AATTTTTACTATGCTCTGCT+TGG | - | chr4.1:13245512-13245531 | MS.gene065959:intron | 30.0% |
| ! | AGGAAAATGTCCTTTTTCTT+TGG | - | chr4.1:13247112-13247131 | MS.gene065959:intron | 30.0% |
| ! | AGTAAAATGGATTTCGGTTT+CGG | - | chr4.1:13245563-13245582 | MS.gene065959:intron | 30.0% |
| ! | TATTTCTATCGGTTATGTGT+CGG | - | chr4.1:13248185-13248204 | MS.gene065959:intron | 30.0% |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | + | chr4.1:13246849-13246868 | None:intergenic | 30.0% |
| !!! | AGTATTGAAAAGGCTAGTTT+TGG | + | chr4.1:13248269-13248288 | None:intergenic | 30.0% |
| AAATATATCAATGTGAGGGC+AGG | - | chr4.1:13247358-13247377 | MS.gene065959:intron | 35.0% | |
| AACTTCAATCTACTGTTGGA+AGG | - | chr4.1:13248143-13248162 | MS.gene065959:intron | 35.0% | |
| AGACTTTACCTTCTTCTCTT+TGG | - | chr4.1:13247592-13247611 | MS.gene065959:intron | 35.0% | |
| AGTATGGAGAGTAGATCAAA+TGG | - | chr4.1:13245967-13245986 | MS.gene065959:intron | 35.0% | |
| AGTGATTATGGTGGTTGAAA+TGG | - | chr4.1:13245662-13245681 | MS.gene065959:intron | 35.0% | |
| ATGGGTACTTAAGTAAGAGT+TGG | - | chr4.1:13246626-13246645 | MS.gene065959:intron | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | - | chr4.1:13246852-13246871 | MS.gene065959:intron | 35.0% | |
| CTCCATACTACAGAATCTAT+AGG | + | chr4.1:13245956-13245975 | None:intergenic | 35.0% | |
| CTCTTATTACTTGCCTCTTT+AGG | - | chr4.1:13247545-13247564 | MS.gene065959:intron | 35.0% | |
| CTGACAAAAGATTTGGGTAA+AGG | + | chr4.1:13248338-13248357 | None:intergenic | 35.0% | |
| CTTTAGGCTGAACAACAATA+TGG | + | chr4.1:13248070-13248089 | None:intergenic | 35.0% | |
| GAAAATAGACTTAGGTGGTT+TGG | - | chr4.1:13245914-13245933 | MS.gene065959:intron | 35.0% | |
| GACCTATAGATTCTGTAGTA+TGG | - | chr4.1:13245951-13245970 | MS.gene065959:intron | 35.0% | |
| GATCTGTCTAGAAATTCATC+AGG | + | chr4.1:13246595-13246614 | None:intergenic | 35.0% | |
| GCTAAAAACAAGTTCGACAT+TGG | - | chr4.1:13248385-13248404 | MS.gene065959:CDS | 35.0% | |
| GTAAAGCAAATGGCCTAATT+AGG | + | chr4.1:13247460-13247479 | None:intergenic | 35.0% | |
| GTAAGGTGAACATTCTTATG+TGG | - | chr4.1:13247692-13247711 | MS.gene065959:intron | 35.0% | |
| GTCCTCAAAATTGTGAGTAT+TGG | + | chr4.1:13246199-13246218 | None:intergenic | 35.0% | |
| GTGGTAAGACTATATGAGAT+AGG | - | chr4.1:13245835-13245854 | MS.gene065959:intron | 35.0% | |
| TATTATCTAAGAGACAGGAG+AGG | + | chr4.1:13247394-13247413 | None:intergenic | 35.0% | |
| TCGTCATATAGTTGCTATAG+TGG | - | chr4.1:13247848-13247867 | MS.gene065959:intron | 35.0% | |
| ! | AATGTCCTTTTTCTTTGGTG+TGG | - | chr4.1:13247117-13247136 | MS.gene065959:intron | 35.0% |
| ! | ACTTCTGACTTATTTCTCTG+TGG | - | chr4.1:13248286-13248305 | MS.gene065959:intron | 35.0% |
| ! | AGGTTAATGTCTGAAACACA+AGG | - | chr4.1:13246365-13246384 | MS.gene065959:intron | 35.0% |
| ! | ATCTCCTAAGACTGATTTCA+AGG | + | chr4.1:13248009-13248028 | None:intergenic | 35.0% |
| ! | CAAATGTGAGGACTTTGTTT+GGG | - | chr4.1:13248408-13248427 | MS.gene065959:CDS | 35.0% |
| ! | GACAGGATCAACATCTTTTA+AGG | - | chr4.1:13248097-13248116 | MS.gene065959:intron | 35.0% |
| ! | GACCAATACTCACAATTTTG+AGG | - | chr4.1:13246194-13246213 | MS.gene065959:CDS | 35.0% |
| ! | GGTTAATGTCTGAAACACAA+GGG | - | chr4.1:13246366-13246385 | MS.gene065959:intron | 35.0% |
| ! | GTAAGACTGGCAATTTTGTA+TGG | - | chr4.1:13245735-13245754 | MS.gene065959:CDS | 35.0% |
| ! | TGAAGATGATGTCATTGGTT+CGG | - | chr4.1:13245328-13245347 | MS.gene065959:CDS | 35.0% |
| ! | TTTAAAAACTCAGCTTGCTC+AGG | + | chr4.1:13248463-13248482 | None:intergenic | 35.0% |
| ! | TTTGTATGGAACAGAGTGTT+GGG | - | chr4.1:13245749-13245768 | MS.gene065959:CDS | 35.0% |
| ! | TTTTGTATGGAACAGAGTGT+TGG | - | chr4.1:13245748-13245767 | MS.gene065959:CDS | 35.0% |
| !! | AGATGGTGGAAAATAGACTT+AGG | - | chr4.1:13245906-13245925 | MS.gene065959:intron | 35.0% |
| !! | CATAGTTGGTAATTGTGCTA+TGG | - | chr4.1:13246405-13246424 | MS.gene065959:intron | 35.0% |
| !! | GTAGGCCTTTTCAATTTGTT+TGG | - | chr4.1:13248228-13248247 | MS.gene065959:intron | 35.0% |
| !! | TCAATTTTGGGAATAACCAC+AGG | + | chr4.1:13245426-13245445 | None:intergenic | 35.0% |
| !! | TTCTCTTTGGTGATGCTTAT+GGG | - | chr4.1:13247605-13247624 | MS.gene065959:intron | 35.0% |
| !!! | CGTTGATTTTATTCTCGTGT+TGG | + | chr4.1:13245785-13245804 | None:intergenic | 35.0% |
| AAATCAACGTAGCAGAGATG+AGG | - | chr4.1:13245796-13245815 | MS.gene065959:CDS | 40.0% | |
| AAGAATGTTCACCTTACGCA+TGG | + | chr4.1:13247689-13247708 | None:intergenic | 40.0% | |
| AAGACTGAACATGCACTAAC+AGG | + | chr4.1:13247297-13247316 | None:intergenic | 40.0% | |
| AAGCATCACCAAAGAGAAGA+AGG | + | chr4.1:13247603-13247622 | None:intergenic | 40.0% | |
| ACCTATAGCAGAAAAGATGG+TGG | - | chr4.1:13245892-13245911 | MS.gene065959:intron | 40.0% | |
| ACTGATATTGTGGCTGTTCT+TGG | - | chr4.1:13246499-13246518 | MS.gene065959:intron | 40.0% | |
| ACTTGAAGGGGGAATTCTAT+CGG | - | chr4.1:13245706-13245725 | MS.gene065959:intron | 40.0% | |
| AGCACCTATAGCAGAAAAGA+TGG | - | chr4.1:13245889-13245908 | MS.gene065959:intron | 40.0% | |
| ATATTGTCCTCGTCTTCCTT+TGG | - | chr4.1:13247046-13247065 | MS.gene065959:intron | 40.0% | |
| ATGGAGAGTAGATCAAATGG+AGG | - | chr4.1:13245970-13245989 | MS.gene065959:intron | 40.0% | |
| CCTATAGCACTATTGCATAG+CGG | - | chr4.1:13247879-13247898 | MS.gene065959:intron | 40.0% | |
| CCTCTTTAGGTCACTACAAA+GGG | - | chr4.1:13247558-13247577 | MS.gene065959:intron | 40.0% | |
| CTTCAGAGATAATTGCTGTG+TGG | - | chr4.1:13247513-13247532 | MS.gene065959:intron | 40.0% | |
| GCAAATGTGAGGACTTTGTT+TGG | - | chr4.1:13248407-13248426 | MS.gene065959:CDS | 40.0% | |
| GCGTAACTTCAATCTACTGT+TGG | - | chr4.1:13248139-13248158 | MS.gene065959:intron | 40.0% | |
| GGTGACTAAGGATGAATTGA+TGG | - | chr4.1:13248429-13248448 | MS.gene065959:CDS | 40.0% | |
| TAAGTACCCATACCTTGCAT+CGG | + | chr4.1:13246617-13246636 | None:intergenic | 40.0% | |
| TCTGCCTTGAAATCAGTCTT+AGG | - | chr4.1:13248002-13248021 | MS.gene065959:intron | 40.0% | |
| TGAACAACAATATGGGCCAT+CGG | + | chr4.1:13248062-13248081 | None:intergenic | 40.0% | |
| TGGTGGAAAATAGACTTAGG+TGG | - | chr4.1:13245909-13245928 | MS.gene065959:intron | 40.0% | |
| ! | AGGCTGCTATTTAACAACAC+TGG | + | chr4.1:13247745-13247764 | None:intergenic | 40.0% |
| ! | TCCACCATCTTTTCTGCTAT+AGG | + | chr4.1:13245896-13245915 | None:intergenic | 40.0% |
| !! | CTTCTCTTTGGTGATGCTTA+TGG | - | chr4.1:13247604-13247623 | MS.gene065959:intron | 40.0% |
| !! | TCTCTTTGGTGATGCTTATG+GGG | - | chr4.1:13247606-13247625 | MS.gene065959:intron | 40.0% |
| !! | TTTTCTGGAAAATGCCACAC+AGG | + | chr4.1:13247646-13247665 | None:intergenic | 40.0% |
| ACAGATCCGATGCAAGGTAT+GGG | - | chr4.1:13246608-13246627 | MS.gene065959:intron | 45.0% | |
| ATCAGAGGATACCATGCGTA+AGG | - | chr4.1:13247675-13247694 | MS.gene065959:intron | 45.0% | |
| ATGACATTTGCTCGCTCCAA+AGG | + | chr4.1:13247065-13247084 | None:intergenic | 45.0% | |
| CAATCTCTCAAACAGCACAG+AGG | + | chr4.1:13245403-13245422 | None:intergenic | 45.0% | |
| CCCTTTGTAGTGACCTAAAG+AGG | + | chr4.1:13247561-13247580 | None:intergenic | 45.0% | |
| CCGCTATGCAATAGTGCTAT+AGG | + | chr4.1:13247882-13247901 | None:intergenic | 45.0% | |
| CTATCGGACAGTTGTAAGAC+TGG | - | chr4.1:13245722-13245741 | MS.gene065959:CDS | 45.0% | |
| GATCCTGTCTGCTCTTCTTT+AGG | + | chr4.1:13248086-13248105 | None:intergenic | 45.0% | |
| GCCTCTTTAGGTCACTACAA+AGG | - | chr4.1:13247557-13247576 | MS.gene065959:intron | 45.0% | |
| GTTCGACATTGGCAAATGTG+AGG | - | chr4.1:13248396-13248415 | MS.gene065959:CDS | 45.0% | |
| GTTGAAATGGAGATGAGGCT+CGG | - | chr4.1:13245675-13245694 | MS.gene065959:intron | 45.0% | |
| TATCAATGTGAGGGCAGGAT+AGG | - | chr4.1:13247363-13247382 | MS.gene065959:intron | 45.0% | |
| TCTAAGAGACAGGAGAGGAT+TGG | + | chr4.1:13247389-13247408 | None:intergenic | 45.0% | |
| TGGTGGTTGAAATGGAGATG+AGG | - | chr4.1:13245670-13245689 | MS.gene065959:intron | 45.0% | |
| TGTTTACTTTCCAGGGGGAA+AGG | - | chr4.1:13246785-13246804 | MS.gene065959:intron | 45.0% | |
| TTCTAGACAGATCCGATGCA+AGG | - | chr4.1:13246602-13246621 | MS.gene065959:intron | 45.0% | |
| TTGAAATGGAGATGAGGCTC+GGG | - | chr4.1:13245676-13245695 | MS.gene065959:intron | 45.0% | |
| ! | AAGCCTTTTCCAACTAGGTG+GGG | + | chr4.1:13246110-13246129 | None:intergenic | 45.0% |
| ! | CAACCAAGCCTTTTCCAACT+AGG | + | chr4.1:13246115-13246134 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCAACTAGGT+GGG | + | chr4.1:13246111-13246130 | None:intergenic | 45.0% |
| ! | CTCGGGTGACTTAACTTGAA+GGG | - | chr4.1:13245693-13245712 | MS.gene065959:intron | 45.0% |
| ! | GGACTTTGTTTGGGTGACTA+AGG | - | chr4.1:13248417-13248436 | MS.gene065959:CDS | 45.0% |
| ! | TCGGGTGACTTAACTTGAAG+GGG | - | chr4.1:13245694-13245713 | MS.gene065959:intron | 45.0% |
| ! | TTTATGGGGTTTCACTGGCT+AGG | - | chr4.1:13246536-13246555 | MS.gene065959:intron | 45.0% |
| ! | TTTCACTGGCTAGGTTTCGA+TGG | - | chr4.1:13246545-13246564 | MS.gene065959:intron | 45.0% |
| ! | TTTTGTCGGAAATGCTCCGA+TGG | - | chr4.1:13248043-13248062 | MS.gene065959:intron | 45.0% |
| !! | CAGTACCAGCTCTGAGAAAA+TGG | - | chr4.1:13245374-13245393 | MS.gene065959:CDS | 45.0% |
| !! | GAGGGCATTTAGGAAAGACT+TGG | - | chr4.1:13246014-13246033 | MS.gene065959:intron | 45.0% |
| AATCCTCGCCTCATCAAGAG+TGG | + | chr4.1:13245354-13245373 | None:intergenic | 50.0% | |
| AGTCAGATCGCTAGTGGTAG+AGG | - | chr4.1:13245995-13246014 | MS.gene065959:intron | 50.0% | |
| CAGAGATGAGGATGTTGCGT+TGG | - | chr4.1:13245808-13245827 | MS.gene065959:CDS | 50.0% | |
| CAGCCTAAAGAAGAGCAGAC+AGG | - | chr4.1:13248080-13248099 | MS.gene065959:intron | 50.0% | |
| CCACCTAGTTGGAAAAGGCT+TGG | - | chr4.1:13246109-13246128 | MS.gene065959:intron | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | + | chr4.1:13246798-13246817 | None:intergenic | 50.0% | |
| GACAGATCCGATGCAAGGTA+TGG | - | chr4.1:13246607-13246626 | MS.gene065959:intron | 50.0% | |
| GAGGATAGTCAGATCGCTAG+TGG | - | chr4.1:13245989-13246008 | MS.gene065959:intron | 50.0% | |
| GCTGTTTGAGAGATTGCCTG+TGG | - | chr4.1:13245407-13245426 | MS.gene065959:CDS | 50.0% | |
| GTCAGATCGCTAGTGGTAGA+GGG | - | chr4.1:13245996-13246015 | MS.gene065959:intron | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | + | chr4.1:13246839-13246858 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCAACTAGG+TGG | + | chr4.1:13246112-13246131 | None:intergenic | 50.0% |
| ! | CGGGTGACTTAACTTGAAGG+GGG | - | chr4.1:13245695-13245714 | MS.gene065959:intron | 50.0% |
| ! | CTTTTCCAACTAGGTGGGGT+CGG | + | chr4.1:13246106-13246125 | None:intergenic | 50.0% |
| ! | GCTCGGGTGACTTAACTTGA+AGG | - | chr4.1:13245692-13245711 | MS.gene065959:intron | 50.0% |
| ! | GGCAACCATTTTCTCAGAGC+TGG | + | chr4.1:13245382-13245401 | None:intergenic | 50.0% |
| !! | GCTAGTGGTAGAGGGCATTT+AGG | - | chr4.1:13246004-13246023 | MS.gene065959:intron | 50.0% |
| !! | GTATGGAACAGAGTGTTGGG+CGG | - | chr4.1:13245752-13245771 | MS.gene065959:CDS | 50.0% |
| CGACCCCACCTAGTTGGAAA+AGG | - | chr4.1:13246104-13246123 | MS.gene065959:intron | 55.0% | |
| CTCCAAGTGGAAAGCCTGTG+TGG | - | chr4.1:13247629-13247648 | MS.gene065959:intron | 55.0% | |
| GATGCTTATGGGGCTCCAAG+TGG | - | chr4.1:13247616-13247635 | MS.gene065959:intron | 55.0% | |
| TGCCACACAGGCTTTCCACT+TGG | + | chr4.1:13247634-13247653 | None:intergenic | 55.0% | |
| ! | AGGATGTTGCGTTGGTCGTG+TGG | - | chr4.1:13245816-13245835 | MS.gene065959:CDS | 55.0% |
| ! | CACTGGCTAGGTTTCGATGG+CGG | - | chr4.1:13246548-13246567 | MS.gene065959:intron | 55.0% |
| ! | TGGTTCGGCCACTCTTGATG+AGG | - | chr4.1:13245343-13245362 | MS.gene065959:CDS | 55.0% |
| ACTAGGTGGGGTCGGCTACA+TGG | + | chr4.1:13246098-13246117 | None:intergenic | 60.0% | |
| GCTCGCTCCAAAGGAAGACG+AGG | + | chr4.1:13247056-13247075 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACCTAGT+TGG | - | chr4.1:13246098-13246117 | MS.gene065959:intron | 60.0% | |
| CGGCCACTCTTGATGAGGCG+AGG | - | chr4.1:13245348-13245367 | MS.gene065959:CDS | 65.0% | |
| GCTTCGGTGATTCGCGGTGC+TGG | + | chr4.1:13246833-13246852 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13245327 | 13248501 | 13245327 | ID=MS.gene065959 |
| chr4.1 | mRNA | 13245327 | 13248501 | 13245327 | ID=MS.gene065959.t1;Parent=MS.gene065959 |
| chr4.1 | exon | 13248353 | 13248501 | 13248353 | ID=MS.gene065959.t1.exon1;Parent=MS.gene065959.t1 |
| chr4.1 | CDS | 13248353 | 13248501 | 13248353 | ID=cds.MS.gene065959.t1;Parent=MS.gene065959.t1 |
| chr4.1 | exon | 13247205 | 13247270 | 13247205 | ID=MS.gene065959.t1.exon2;Parent=MS.gene065959.t1 |
| chr4.1 | CDS | 13247205 | 13247270 | 13247205 | ID=cds.MS.gene065959.t1;Parent=MS.gene065959.t1 |
| chr4.1 | exon | 13246955 | 13247029 | 13246955 | ID=MS.gene065959.t1.exon3;Parent=MS.gene065959.t1 |
| chr4.1 | CDS | 13246955 | 13247029 | 13246955 | ID=cds.MS.gene065959.t1;Parent=MS.gene065959.t1 |
| chr4.1 | exon | 13246132 | 13246261 | 13246132 | ID=MS.gene065959.t1.exon4;Parent=MS.gene065959.t1 |
| chr4.1 | CDS | 13246132 | 13246261 | 13246132 | ID=cds.MS.gene065959.t1;Parent=MS.gene065959.t1 |
| chr4.1 | exon | 13245710 | 13245835 | 13245710 | ID=MS.gene065959.t1.exon5;Parent=MS.gene065959.t1 |
| chr4.1 | CDS | 13245710 | 13245835 | 13245710 | ID=cds.MS.gene065959.t1;Parent=MS.gene065959.t1 |
| chr4.1 | exon | 13245327 | 13245470 | 13245327 | ID=MS.gene065959.t1.exon6;Parent=MS.gene065959.t1 |
| chr4.1 | CDS | 13245327 | 13245470 | 13245327 | ID=cds.MS.gene065959.t1;Parent=MS.gene065959.t1 |
| Gene Sequence |
| Protein sequence |
