Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066127.t1 | XP_013467847.1 | 99.3 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 7.00E-76 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066127.t1 | Q9M1A8 | 61.7 | 141 | 53 | 1 | 5 | 145 | 7 | 146 | 2.0e-47 | 189.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066127.t1 | I3SRI9 | 99.3 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 5.0e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051852 | MS.gene066127 | -0.809887 | 1.52E-50 | -1.69E-46 |
| MS.gene058223 | MS.gene066127 | 0.80209 | 6.62E-49 | -1.69E-46 |
| MS.gene060122 | MS.gene066127 | 0.810633 | 1.05E-50 | -1.69E-46 |
| MS.gene060125 | MS.gene066127 | 0.810636 | 1.04E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene066127 | -0.827574 | 1.45E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049824 | MS.gene066127 | PPI |
| MS.gene051008 | MS.gene066127 | PPI |
| MS.gene063673 | MS.gene066127 | PPI |
| MS.gene24205 | MS.gene066127 | PPI |
| MS.gene68633 | MS.gene066127 | PPI |
| MS.gene27287 | MS.gene066127 | PPI |
| MS.gene27025 | MS.gene066127 | PPI |
| MS.gene047813 | MS.gene066127 | PPI |
| MS.gene053492 | MS.gene066127 | PPI |
| MS.gene67503 | MS.gene066127 | PPI |
| MS.gene39636 | MS.gene066127 | PPI |
| MS.gene064140 | MS.gene066127 | PPI |
| MS.gene08465 | MS.gene066127 | PPI |
| MS.gene81051 | MS.gene066127 | PPI |
| MS.gene030166 | MS.gene066127 | PPI |
| MS.gene64820 | MS.gene066127 | PPI |
| MS.gene004126 | MS.gene066127 | PPI |
| MS.gene65249 | MS.gene066127 | PPI |
| MS.gene27326 | MS.gene066127 | PPI |
| MS.gene034754 | MS.gene066127 | PPI |
| MS.gene004127 | MS.gene066127 | PPI |
| MS.gene049822 | MS.gene066127 | PPI |
| MS.gene26950 | MS.gene066127 | PPI |
| MS.gene26516 | MS.gene066127 | PPI |
| MS.gene67685 | MS.gene066127 | PPI |
| MS.gene24295 | MS.gene066127 | PPI |
| MS.gene90747 | MS.gene066127 | PPI |
| MS.gene64653 | MS.gene066127 | PPI |
| MS.gene26777 | MS.gene066127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066127.t1 | MTR_1g056890 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 1.01e-104 | 295 |
| MS.gene066127.t1 | MTR_6g090500 | 44.295 | 149 | 68 | 4 | 1 | 145 | 1 | 138 | 1.11e-33 | 115 |
| MS.gene066127.t1 | MTR_4g133090 | 44.295 | 149 | 68 | 4 | 1 | 145 | 1 | 138 | 1.11e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066127.t1 | AT3G59600 | 61.702 | 141 | 53 | 1 | 5 | 145 | 7 | 146 | 3.27e-64 | 193 |
| MS.gene066127.t1 | AT1G54250 | 61.702 | 141 | 53 | 1 | 5 | 145 | 7 | 146 | 1.64e-63 | 191 |
Find 25 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTGTCCCATCTTTA+AGG | 0.163307 | 1.4:+47228875 | None:intergenic |
| GGATTATAGTAGCCAGTATC+TGG | 0.234479 | 1.4:+47228813 | None:intergenic |
| CACTTCTTGAAGATATCTTT+AGG | 0.284321 | 1.4:-47229116 | MS.gene066127:CDS |
| AGGGAGTTGAATATTTCTTT+TGG | 0.310558 | 1.4:-47226935 | MS.gene066127:CDS |
| ACTTCTTGAAGATATCTTTA+GGG | 0.337546 | 1.4:-47229115 | MS.gene066127:CDS |
| CCTGATGGCACCCCAGATAC+TGG | 0.345604 | 1.4:-47228825 | MS.gene066127:CDS |
| AATTTCTGTCCCATCTTTAA+GGG | 0.357752 | 1.4:+47228876 | None:intergenic |
| CCAGTATCTGGGGTGCCATC+AGG | 0.417512 | 1.4:+47228825 | None:intergenic |
| AACTATGAATATGTCATGTA+TGG | 0.442578 | 1.4:-47228142 | MS.gene066127:CDS |
| TACAGAGTAACAGAGGGTTC+AGG | 0.455659 | 1.4:-47228112 | MS.gene066127:CDS |
| TGAGCTATATCCCTTAAAGA+TGG | 0.478515 | 1.4:-47228886 | MS.gene066127:CDS |
| GATTATAGTAGCCAGTATCT+GGG | 0.489343 | 1.4:+47228814 | None:intergenic |
| AGATACTGGCTACTATAATC+CGG | 0.532782 | 1.4:-47228811 | MS.gene066127:intron |
| TGGGCTTCTGATGATGCTGA+AGG | 0.547894 | 1.4:-47226912 | MS.gene066127:CDS |
| GAGCTATATCCCTTAAAGAT+GGG | 0.563262 | 1.4:-47228885 | MS.gene066127:CDS |
| AGAGTAACAGAGGGTTCAGG+AGG | 0.579301 | 1.4:-47228109 | MS.gene066127:CDS |
| ACAAGTTTGAGCTTGATCAA+AGG | 0.582436 | 1.4:-47226871 | MS.gene066127:CDS |
| GGGCTTCTGATGATGCTGAA+GGG | 0.605774 | 1.4:-47226911 | MS.gene066127:CDS |
| AAAGGTTGTATCTTCTGATG+AGG | 0.609382 | 1.4:-47226853 | MS.gene066127:CDS |
| GTTCCAACACTCAATCCTGA+TGG | 0.623194 | 1.4:-47228840 | MS.gene066127:CDS |
| GTGCCATCAGGATTGAGTGT+TGG | 0.642346 | 1.4:+47228837 | None:intergenic |
| GAGTAACAGAGGGTTCAGGA+GGG | 0.649006 | 1.4:-47228108 | MS.gene066127:CDS |
| AAGCTTTACAGAGTAACAGA+GGG | 0.656174 | 1.4:-47228118 | MS.gene066127:CDS |
| AAAGCTTTACAGAGTAACAG+AGG | 0.672431 | 1.4:-47228119 | MS.gene066127:CDS |
| ATTATAGTAGCCAGTATCTG+GGG | 0.679143 | 1.4:+47228815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTTTAATTACCAAAAT+GGG | - | chr1.4:47228120-47228139 | MS.gene066127:CDS | 15.0% |
| !! | AATTTCATAAGAAATAGAAA+CGG | - | chr1.4:47228493-47228512 | MS.gene066127:intron | 15.0% |
| !! | CTATATAATAATCACTTAAT+AGG | - | chr1.4:47227454-47227473 | MS.gene066127:intron | 15.0% |
| !! | TAAATGTTTAATTACCAAAA+TGG | - | chr1.4:47228119-47228138 | MS.gene066127:CDS | 15.0% |
| !!! | CACTTTTTTTTAAATATCAT+AGG | + | chr1.4:47228366-47228385 | None:intergenic | 15.0% |
| !!! | TGTTCTTAATATATTACTTT+TGG | - | chr1.4:47229011-47229030 | MS.gene066127:intron | 15.0% |
| !! | AAATAAGTTCAAATATCTTG+AGG | + | chr1.4:47227308-47227327 | None:intergenic | 20.0% |
| !! | AATAAGTTCAAAATAGCTTA+TGG | + | chr1.4:47227342-47227361 | None:intergenic | 20.0% |
| !! | AGTACTATAATGTTAATCAA+TGG | - | chr1.4:47228873-47228892 | MS.gene066127:CDS | 20.0% |
| !! | TCTTAAAAAAAAACTCTAAC+CGG | + | chr1.4:47228920-47228939 | None:intergenic | 20.0% |
| !!! | ACATTGTTTCTGTAAAAAAA+AGG | - | chr1.4:47228276-47228295 | MS.gene066127:intron | 20.0% |
| !!! | AGTATGTATGTATTTGTTTT+AGG | - | chr1.4:47228163-47228182 | MS.gene066127:CDS | 20.0% |
| !!! | CAATTTTATTTTGCATTACT+TGG | + | chr1.4:47227688-47227707 | None:intergenic | 20.0% |
| !!! | GCTAATTTTTTTATTTTCCA+GGG | - | chr1.4:47227783-47227802 | MS.gene066127:intron | 20.0% |
| !!! | TATTTTTCGATTCTTTTAGT+GGG | - | chr1.4:47226936-47226955 | MS.gene066127:CDS | 20.0% |
| !!! | TGCTAATTTTTTTATTTTCC+AGG | - | chr1.4:47227782-47227801 | MS.gene066127:intron | 20.0% |
| !!! | TTAATATATTACTTTTGGCA+GGG | - | chr1.4:47229016-47229035 | MS.gene066127:intron | 20.0% |
| !!! | TTATTTTTCGATTCTTTTAG+TGG | - | chr1.4:47226935-47226954 | MS.gene066127:CDS | 20.0% |
| !!! | TTTTATCAATTCATGTTGTT+TGG | - | chr1.4:47228073-47228092 | MS.gene066127:intron | 20.0% |
| ! | AACTATGAATATGTCATGTA+TGG | - | chr1.4:47227828-47227847 | MS.gene066127:intron | 25.0% |
| ! | ACGATTAATGAATGTAATAC+CGG | + | chr1.4:47227181-47227200 | None:intergenic | 25.0% |
| ! | ACTTCTTGAAGATATCTTTA+GGG | - | chr1.4:47226855-47226874 | MS.gene066127:CDS | 25.0% |
| ! | CTTAAAAAAAAACTCTAACC+GGG | + | chr1.4:47228919-47228938 | None:intergenic | 25.0% |
| ! | GACAAAAAGTTATTCGAAAA+AGG | - | chr1.4:47226898-47226917 | MS.gene066127:CDS | 25.0% |
| ! | GACTAAATTGAGAAATCAAA+TGG | - | chr1.4:47228563-47228582 | MS.gene066127:intron | 25.0% |
| ! | TAACCAAATTTAGTACAGAT+AGG | + | chr1.4:47227622-47227641 | None:intergenic | 25.0% |
| ! | TATAAAACAAACTGTTACTG+CGG | - | chr1.4:47228402-47228421 | MS.gene066127:intron | 25.0% |
| !! | AATATCATAGGTTTTTCTAG+AGG | + | chr1.4:47228354-47228373 | None:intergenic | 25.0% |
| !! | AGTTGAATATTTCTTTTGGT+GGG | - | chr1.4:47229039-47229058 | MS.gene066127:intron | 25.0% |
| !! | TCTAGAGGTTTTTATATCAA+AGG | + | chr1.4:47228339-47228358 | None:intergenic | 25.0% |
| !! | TGACAGAATTGATTTATGTT+TGG | - | chr1.4:47228029-47228048 | MS.gene066127:intron | 25.0% |
| !!! | AAAGATAAAAGTGTTTAGGT+TGG | + | chr1.4:47228470-47228489 | None:intergenic | 25.0% |
| !!! | CTTAATATATTACTTTTGGC+AGG | - | chr1.4:47229015-47229034 | MS.gene066127:intron | 25.0% |
| !!! | TTGCAAAGATAAAAGTGTTT+AGG | + | chr1.4:47228474-47228493 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTCCAGGGTAAT+CGG | - | chr1.4:47227790-47227809 | MS.gene066127:intron | 25.0% |
| AAATTTCTGTCCCATCTTTA+AGG | + | chr1.4:47227098-47227117 | None:intergenic | 30.0% | |
| AATTTCTGTCCCATCTTTAA+GGG | + | chr1.4:47227097-47227116 | None:intergenic | 30.0% | |
| ATTACTTGGTTAAGAGCAAT+AGG | + | chr1.4:47227674-47227693 | None:intergenic | 30.0% | |
| CACTTCTTGAAGATATCTTT+AGG | - | chr1.4:47226854-47226873 | MS.gene066127:CDS | 30.0% | |
| CCAAAAACAAAATACAACCT+TGG | - | chr1.4:47228309-47228328 | MS.gene066127:intron | 30.0% | |
| TGAGTTTGACAGAATTGATT+TGG | - | chr1.4:47227993-47228012 | MS.gene066127:intron | 30.0% | |
| TTACTGCGGAAAAAATGAAT+GGG | - | chr1.4:47228416-47228435 | MS.gene066127:intron | 30.0% | |
| TTTATATCAAAGGTAAGCCA+AGG | + | chr1.4:47228329-47228348 | None:intergenic | 30.0% | |
| ! | AGGGAGTTGAATATTTCTTT+TGG | - | chr1.4:47229035-47229054 | MS.gene066127:intron | 30.0% |
| ! | ATCAATTCATGTTGTTTGGA+TGG | - | chr1.4:47228077-47228096 | MS.gene066127:intron | 30.0% |
| ! | CGAATAACTTTTTGTCATCT+GGG | + | chr1.4:47226894-47226913 | None:intergenic | 30.0% |
| ! | CTCAAATCGATTCATATGAA+AGG | + | chr1.4:47228590-47228609 | None:intergenic | 30.0% |
| ! | GAGTTGAATATTTCTTTTGG+TGG | - | chr1.4:47229038-47229057 | MS.gene066127:intron | 30.0% |
| ! | GATGGCATCTTTTCTTTTTA+TGG | - | chr1.4:47227721-47227740 | MS.gene066127:intron | 30.0% |
| ! | TCGAATAACTTTTTGTCATC+TGG | + | chr1.4:47226895-47226914 | None:intergenic | 30.0% |
| ! | TTTTGCATATAGTGTGTGTT+TGG | - | chr1.4:47227952-47227971 | MS.gene066127:intron | 30.0% |
| !! | CTTCAACTGGAATTGATTTT+GGG | - | chr1.4:47228635-47228654 | MS.gene066127:intron | 30.0% |
| !! | GATCTTTTGATTGTGATACA+AGG | - | chr1.4:47228962-47228981 | MS.gene066127:intron | 30.0% |
| !! | GTTGTACTATGATTGATTTG+TGG | - | chr1.4:47228984-47229003 | MS.gene066127:intron | 30.0% |
| !! | TTCAACTGGAATTGATTTTG+GGG | - | chr1.4:47228636-47228655 | MS.gene066127:intron | 30.0% |
| !!! | CCAAGGTTGTATTTTGTTTT+TGG | + | chr1.4:47228312-47228331 | None:intergenic | 30.0% |
| !!! | GTTTTTGGAACAATGTCAAA+AGG | - | chr1.4:47227562-47227581 | MS.gene066127:intron | 30.0% |
| AAAGCTTTACAGAGTAACAG+AGG | - | chr1.4:47227851-47227870 | MS.gene066127:intron | 35.0% | |
| AAAGGTTGTATCTTCTGATG+AGG | - | chr1.4:47229117-47229136 | MS.gene066127:CDS | 35.0% | |
| AAGCTTTACAGAGTAACAGA+GGG | - | chr1.4:47227852-47227871 | MS.gene066127:intron | 35.0% | |
| ACAAGTTTGAGCTTGATCAA+AGG | - | chr1.4:47229099-47229118 | MS.gene066127:CDS | 35.0% | |
| ATTATAGTAGCCAGTATCTG+GGG | + | chr1.4:47227158-47227177 | None:intergenic | 35.0% | |
| CACTTGAAAACAACATGCAT+CGG | + | chr1.4:47228812-47228831 | None:intergenic | 35.0% | |
| CATTAATCGTTGCATGACTT+GGG | - | chr1.4:47227191-47227210 | MS.gene066127:intron | 35.0% | |
| GAATACAGTGATGATTATCC+AGG | - | chr1.4:47227588-47227607 | MS.gene066127:intron | 35.0% | |
| GAGCCTATCTGTACTAAATT+TGG | - | chr1.4:47227616-47227635 | MS.gene066127:intron | 35.0% | |
| GAGCTATATCCCTTAAAGAT+GGG | - | chr1.4:47227085-47227104 | MS.gene066127:intron | 35.0% | |
| GAGTATCAGTTTACAGAGAA+AGG | - | chr1.4:47227916-47227935 | MS.gene066127:intron | 35.0% | |
| GATTATAGTAGCCAGTATCT+GGG | + | chr1.4:47227159-47227178 | None:intergenic | 35.0% | |
| GTTACTGCGGAAAAAATGAA+TGG | - | chr1.4:47228415-47228434 | MS.gene066127:intron | 35.0% | |
| TCATTAATCGTTGCATGACT+TGG | - | chr1.4:47227190-47227209 | MS.gene066127:intron | 35.0% | |
| TGAGCTATATCCCTTAAAGA+TGG | - | chr1.4:47227084-47227103 | MS.gene066127:intron | 35.0% | |
| TGTAAACTGATACTCAAAGC+AGG | + | chr1.4:47227911-47227930 | None:intergenic | 35.0% | |
| TTGGAACAATGTCAAAAGGA+GGG | - | chr1.4:47227566-47227585 | MS.gene066127:intron | 35.0% | |
| ! | ACAGAAATTTTCTCTTGCAC+TGG | - | chr1.4:47227108-47227127 | MS.gene066127:intron | 35.0% |
| ! | AGATACTGGCTACTATAATC+CGG | - | chr1.4:47227159-47227178 | MS.gene066127:intron | 35.0% |
| ! | ATGAACATTTGAGCCCATTT+TGG | + | chr1.4:47228136-47228155 | None:intergenic | 35.0% |
| ! | GTCATTTAGAAGCTAGTTTC+TGG | - | chr1.4:47228786-47228805 | MS.gene066127:intron | 35.0% |
| ! | TCCTTTGAAGAAAACAACCA+TGG | + | chr1.4:47228545-47228564 | None:intergenic | 35.0% |
| ! | TTTGGAACAATGTCAAAAGG+AGG | - | chr1.4:47227565-47227584 | MS.gene066127:intron | 35.0% |
| !! | ACCATGGTTGTTTTCTTCAA+AGG | - | chr1.4:47228541-47228560 | MS.gene066127:intron | 35.0% |
| !! | CTTATTTTCATGAGCTCTCT+AGG | - | chr1.4:47227356-47227375 | MS.gene066127:intron | 35.0% |
| !! | GCTTCAACTGGAATTGATTT+TGG | - | chr1.4:47228634-47228653 | MS.gene066127:intron | 35.0% |
| !! | TTGGAGAAGATAAGAGTACT+GGG | + | chr1.4:47228451-47228470 | None:intergenic | 35.0% |
| !!! | GTTTTTCTGAAACAACTTCC+CGG | - | chr1.4:47228898-47228917 | MS.gene066127:CDS | 35.0% |
| AATTGCTACTACTGCACAGA+TGG | - | chr1.4:47227703-47227722 | MS.gene066127:intron | 40.0% | |
| AGATCGCTTTCAACTCTAAC+TGG | + | chr1.4:47228947-47228966 | None:intergenic | 40.0% | |
| CGATTGGGAAATTATGACCA+TGG | - | chr1.4:47228525-47228544 | MS.gene066127:intron | 40.0% | |
| CGTGGGTCAAAATGATGTTT+GGG | + | chr1.4:47228688-47228707 | None:intergenic | 40.0% | |
| GATCGCTTTCAACTCTAACT+GGG | + | chr1.4:47228946-47228965 | None:intergenic | 40.0% | |
| GGATTATAGTAGCCAGTATC+TGG | + | chr1.4:47227160-47227179 | None:intergenic | 40.0% | |
| TAATTTCCCAATCGTGGCAA+CGG | + | chr1.4:47228519-47228538 | None:intergenic | 40.0% | |
| TCGTGGGTCAAAATGATGTT+TGG | + | chr1.4:47228689-47228708 | None:intergenic | 40.0% | |
| TGGTCATAATTTCCCAATCG+TGG | + | chr1.4:47228525-47228544 | None:intergenic | 40.0% | |
| ! | GTTGGAGAAGATAAGAGTAC+TGG | + | chr1.4:47228452-47228471 | None:intergenic | 40.0% |
| !! | ATAGTGTGTGTTTGGTTCTG+CGG | - | chr1.4:47227960-47227979 | MS.gene066127:intron | 40.0% |
| !!! | CGATGCATGTTGTTTTCAAG+TGG | - | chr1.4:47228810-47228829 | MS.gene066127:intron | 40.0% |
| AAACGTGTTCGCATGGAACT+AGG | + | chr1.4:47227546-47227565 | None:intergenic | 45.0% | |
| AACAAGACTATGCCCCTGTT+TGG | + | chr1.4:47228761-47228780 | None:intergenic | 45.0% | |
| AACGTGTTCGCATGGAACTA+GGG | + | chr1.4:47227545-47227564 | None:intergenic | 45.0% | |
| GTAGAACGCAGAACCAAACA+GGG | - | chr1.4:47228745-47228764 | MS.gene066127:intron | 45.0% | |
| GTTCCAAAAACGTGTTCGCA+TGG | + | chr1.4:47227553-47227572 | None:intergenic | 45.0% | |
| GTTCCAACACTCAATCCTGA+TGG | - | chr1.4:47227130-47227149 | MS.gene066127:intron | 45.0% | |
| TACAGAGTAACAGAGGGTTC+AGG | - | chr1.4:47227858-47227877 | MS.gene066127:intron | 45.0% | |
| TACAGATAGGCTCAAACACC+TGG | + | chr1.4:47227609-47227628 | None:intergenic | 45.0% | |
| TAGAACGCAGAACCAAACAG+GGG | - | chr1.4:47228746-47228765 | MS.gene066127:intron | 45.0% | |
| TGTAGAACGCAGAACCAAAC+AGG | - | chr1.4:47228744-47228763 | MS.gene066127:intron | 45.0% | |
| TTTGAGTAGACGCAGAAGCT+AGG | - | chr1.4:47228604-47228623 | MS.gene066127:intron | 45.0% | |
| ! | CAATTGATTGCCGATTACCC+TGG | + | chr1.4:47227803-47227822 | None:intergenic | 45.0% |
| ! | CTAGGAAAACTGGCTTCAAC+TGG | - | chr1.4:47228622-47228641 | MS.gene066127:intron | 45.0% |
| ! | GTTCCATGCGAACACGTTTT+TGG | - | chr1.4:47227547-47227566 | MS.gene066127:intron | 45.0% |
| !! | AGGGGCATAGTCTTGTTGAT+TGG | - | chr1.4:47228764-47228783 | MS.gene066127:intron | 45.0% |
| !! | TATAGTAATTAAAAATTAAT+CGG | - | chr1.4:47228236-47228255 | MS.gene066127:intron | 5.0% |
| AGAGTAACAGAGGGTTCAGG+AGG | - | chr1.4:47227861-47227880 | MS.gene066127:intron | 50.0% | |
| GACGCAGAAGCTAGGAAAAC+TGG | - | chr1.4:47228612-47228631 | MS.gene066127:intron | 50.0% | |
| GAGTAACAGAGGGTTCAGGA+GGG | - | chr1.4:47227862-47227881 | MS.gene066127:intron | 50.0% | |
| GTGCCATCAGGATTGAGTGT+TGG | + | chr1.4:47227136-47227155 | None:intergenic | 50.0% | |
| ! | GGGCTTCTGATGATGCTGAA+GGG | - | chr1.4:47229059-47229078 | MS.gene066127:intron | 50.0% |
| ! | TGCATGACTTGGGATCTCTC+TGG | - | chr1.4:47227201-47227220 | MS.gene066127:intron | 50.0% |
| ! | TGGGCTTCTGATGATGCTGA+AGG | - | chr1.4:47229058-47229077 | MS.gene066127:intron | 50.0% |
| AAACGGCCGTTGCCACGATT+GGG | - | chr1.4:47228510-47228529 | MS.gene066127:intron | 55.0% | |
| ACCACGCAAACGTGCGTTTG+AGG | - | chr1.4:47228720-47228739 | MS.gene066127:intron | 55.0% | |
| CACGTTTGCGTGGTCAAACG+CGG | + | chr1.4:47228714-47228733 | None:intergenic | 55.0% | |
| CGCATGGAACTAGGGACTGA+GGG | + | chr1.4:47227537-47227556 | None:intergenic | 55.0% | |
| GTGGTCAAACGCGGTTTCGT+GGG | + | chr1.4:47228705-47228724 | None:intergenic | 55.0% | |
| TCGCATGGAACTAGGGACTG+AGG | + | chr1.4:47227538-47227557 | None:intergenic | 55.0% | |
| !! | GTGTGTGTTTGGTTCTGCGG+TGG | - | chr1.4:47227963-47227982 | MS.gene066127:intron | 55.0% |
| CCTGATGGCACCCCAGATAC+TGG | - | chr1.4:47227145-47227164 | MS.gene066127:intron | 60.0% | |
| CGTGGTCAAACGCGGTTTCG+TGG | + | chr1.4:47228706-47228725 | None:intergenic | 60.0% | |
| GAAACGGCCGTTGCCACGAT+TGG | - | chr1.4:47228509-47228528 | MS.gene066127:intron | 60.0% | |
| GCCTCAAACGCACGTTTGCG+TGG | + | chr1.4:47228724-47228743 | None:intergenic | 60.0% | |
| ! | CCAGTATCTGGGGTGCCATC+AGG | + | chr1.4:47227148-47227167 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 47226844 | 47229148 | 47226844 | ID=MS.gene066127 |
| chr1.4 | mRNA | 47226844 | 47229148 | 47226844 | ID=MS.gene066127.t1;Parent=MS.gene066127 |
| chr1.4 | exon | 47229073 | 47229148 | 47229073 | ID=MS.gene066127.t1.exon1;Parent=MS.gene066127.t1 |
| chr1.4 | CDS | 47229073 | 47229148 | 47229073 | ID=cds.MS.gene066127.t1;Parent=MS.gene066127.t1 |
| chr1.4 | exon | 47228812 | 47228969 | 47228812 | ID=MS.gene066127.t1.exon2;Parent=MS.gene066127.t1 |
| chr1.4 | CDS | 47228812 | 47228969 | 47228812 | ID=cds.MS.gene066127.t1;Parent=MS.gene066127.t1 |
| chr1.4 | exon | 47228097 | 47228188 | 47228097 | ID=MS.gene066127.t1.exon3;Parent=MS.gene066127.t1 |
| chr1.4 | CDS | 47228097 | 47228188 | 47228097 | ID=cds.MS.gene066127.t1;Parent=MS.gene066127.t1 |
| chr1.4 | exon | 47226844 | 47226955 | 47226844 | ID=MS.gene066127.t1.exon4;Parent=MS.gene066127.t1 |
| chr1.4 | CDS | 47226844 | 47226955 | 47226844 | ID=cds.MS.gene066127.t1;Parent=MS.gene066127.t1 |
| Gene Sequence |
| Protein sequence |
