AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066245

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066245.t1 MTR_1g099360 97.409 579 12 1 1 579 1 576 0.0 1171
MS.gene066245.t1 MTR_6g034195 84.749 577 83 3 1 575 1 574 0.0 1007
MS.gene066245.t1 MTR_5g014140 74.735 471 119 0 105 575 76 546 0.0 738
MS.gene066245.t1 MTR_5g014140 81.962 316 57 0 105 420 76 391 0.0 541
MS.gene066245.t1 MTR_1g076540 45.912 477 236 7 106 561 89 564 5.56e-128 387
MS.gene066245.t1 MTR_1g105965 41.273 487 267 9 106 575 90 574 2.66e-114 352
MS.gene066245.t1 MTR_6g004020 37.083 480 259 12 107 551 21 492 4.67e-85 274
MS.gene066245.t1 MTR_4g083340 36.458 480 262 11 107 551 8 479 5.25e-85 273
MS.gene066245.t1 MTR_7g100760 35.197 483 264 12 107 551 11 482 1.20e-81 265
MS.gene066245.t1 MTR_1g105965 45.066 304 156 5 106 399 90 392 1.42e-79 256
MS.gene066245.t1 MTR_4g083330 33.264 484 253 11 107 555 11 459 5.32e-73 241
MS.gene066245.t1 MTR_1g091040 27.572 486 310 15 108 555 30 511 1.23e-43 163
MS.gene066245.t1 MTR_1g105965 39.906 213 118 4 106 309 90 301 4.84e-43 156
MS.gene066245.t1 MTR_7g103420 26.749 486 315 13 108 555 30 512 2.30e-42 160
MS.gene066245.t1 MTR_7g103420 26.600 500 313 13 108 555 30 527 8.09e-42 158
MS.gene066245.t1 MTR_1g061630 28.362 409 248 11 108 494 30 415 3.26e-40 153
MS.gene066245.t1 MTR_1g061630 28.224 411 262 11 108 494 30 431 3.70e-40 154
MS.gene066245.t1 MTR_7g103420 25.647 425 276 12 169 555 1 423 9.67e-31 125
MS.gene066245.t1 MTR_1g091040 28.011 357 226 11 227 555 25 378 1.17e-28 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066245.t1 AT5G52920 79.102 579 117 1 1 575 1 579 0.0 955
MS.gene066245.t1 AT1G32440 76.858 471 108 1 105 575 98 567 0.0 759
MS.gene066245.t1 AT3G22960 47.158 475 231 7 106 561 117 590 1.04e-130 395
MS.gene066245.t1 AT3G55650 34.765 489 284 9 96 551 6 492 4.50e-86 276
MS.gene066245.t1 AT3G25960 35.565 478 282 9 96 551 6 479 2.67e-85 274
MS.gene066245.t1 AT5G56350 35.341 498 274 14 105 564 7 494 1.17e-83 270
MS.gene066245.t1 AT5G63680 37.342 474 266 11 107 551 21 492 2.41e-83 270
MS.gene066245.t1 AT5G63680 37.342 474 266 11 107 551 21 492 2.41e-83 270
MS.gene066245.t1 AT5G63680 37.342 474 266 11 107 551 21 492 2.41e-83 270
MS.gene066245.t1 AT3G04050 34.511 481 280 10 104 551 14 492 4.75e-83 269
MS.gene066245.t1 AT4G26390 35.404 483 280 10 105 557 6 486 1.39e-82 267
MS.gene066245.t1 AT5G08570 36.842 475 267 12 107 551 21 492 1.57e-82 267
MS.gene066245.t1 AT5G08570 36.842 475 267 12 107 551 21 492 1.57e-82 267
MS.gene066245.t1 AT5G08570 36.842 475 267 12 107 551 21 492 1.57e-82 267
MS.gene066245.t1 AT3G55810 32.515 489 277 10 96 551 6 474 1.65e-71 238
MS.gene066245.t1 AT2G36580 28.279 488 305 14 108 555 30 512 5.99e-46 170
MS.gene066245.t1 AT3G52990 27.869 488 307 14 108 555 30 512 4.06e-44 165
MS.gene066245.t1 AT3G52990 27.155 464 293 14 132 555 1 459 3.07e-38 147
MS.gene066245.t1 AT3G49160 29.258 229 144 6 215 432 473 694 7.92e-19 90.9
MS.gene066245.t1 AT3G49160 29.258 229 144 6 215 432 385 606 8.72e-19 90.5

Find 152 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAGTTGGTAATGTTTC+TGG 0.172900 1.1:-71516444 MS.gene066245:CDS
TCCGATGGAATAATGCTTTC+TGG 0.190585 1.1:-71514294 MS.gene066245:CDS
AGACTTAGGTGGGAAGATTT+TGG 0.208282 1.1:+71516744 None:intergenic
GATTGGGATGACATCAAATT+TGG 0.216798 1.1:-71515087 MS.gene066245:CDS
ACTAAGATTGTTTGTACTAT+TGG 0.260506 1.1:-71516387 MS.gene066245:CDS
CTGATCAGTAAAAGCAAATA+TGG 0.278721 1.1:+71513693 None:intergenic
TTGAATACTTGGCCAATATT+AGG 0.283361 1.1:+71513982 None:intergenic
ATTACTTTCGCAGCTTTAAT+TGG 0.294022 1.1:+71514057 None:intergenic
TCAGAGAATTCCATGTAAAT+AGG 0.315231 1.1:+71513250 None:intergenic
CCATTCCACTCACAATATTC+AGG 0.322453 1.1:-71512724 MS.gene066245:CDS
ATCGATAACTTCGCATTTCA+CGG 0.329487 1.1:+71515337 None:intergenic
TCATAAGAAAGTTATTGATT+TGG 0.344192 1.1:-71516271 MS.gene066245:CDS
ATTTCCTTTGTATTAGTAGA+AGG 0.347373 1.1:+71516363 None:intergenic
AAAAGCCTTGGATTTGTTGC+AGG 0.348377 1.1:-71513206 MS.gene066245:intron
CTAATACAAAGGAAATGATT+TGG 0.354416 1.1:-71516356 MS.gene066245:CDS
CAATGCAGGAAGAGATAATA+AGG 0.366508 1.1:-71514437 MS.gene066245:intron
GAATCATCTTCGGGTGATAC+AGG 0.367392 1.1:+71516649 None:intergenic
TGGTGCCTGCAGGTCGATAA+TGG 0.377025 1.1:+71513713 None:intergenic
CTTCACTAGATCGGGTTTCA+TGG 0.377434 1.1:-71513749 MS.gene066245:CDS
AAAAGCGGAACCTCCTCAAT+AGG 0.380743 1.1:+71514577 None:intergenic
CGGAGACATTTGAATGTTAG+AGG 0.383246 1.1:-71515296 MS.gene066245:CDS
GGATAGTAAAAGTGAATTCC+TGG 0.383564 1.1:+71516027 None:intergenic
CATACTTTCCAGCATATTTG+TGG 0.385316 1.1:+71514380 None:intergenic
TCCCTCTTACGACCCACTTC+AGG 0.386910 1.1:-71516817 MS.gene066245:CDS
ACAAACCTTTGAATCATCTT+CGG 0.386930 1.1:+71516639 None:intergenic
CTATGCCGTTTCTTTCGTTA+AGG 0.387859 1.1:-71515043 MS.gene066245:CDS
ACCTCTGCTCTGGTTGGCGT+GGG 0.401155 1.1:+71514348 None:intergenic
TGAGGACTTTCTTGCATTGA+TGG 0.402280 1.1:+71516687 None:intergenic
ATTTGGAAACTTGCTGAGGC+TGG 0.403880 1.1:-71516339 MS.gene066245:CDS
AACTGTTGTCTTCACTAGAT+CGG 0.404661 1.1:-71513758 MS.gene066245:CDS
TGTATAGATTGAGGCGGAGT+TGG 0.408751 1.1:-71516484 MS.gene066245:intron
ACTGTTGTCTTCACTAGATC+GGG 0.416610 1.1:-71513757 MS.gene066245:CDS
CAAACCTTTGAATCATCTTC+GGG 0.417561 1.1:+71516640 None:intergenic
GAGGTTGTGAAGCAAAGCTT+GGG 0.419629 1.1:+71516712 None:intergenic
GGGCAGATGCCACCTAATAT+TGG 0.424869 1.1:-71513994 MS.gene066245:CDS
AAAGTGGAAGGCAACCTATA+TGG 0.425350 1.1:-71512752 MS.gene066245:CDS
CAGAGGTTGGCTTTGTATCA+AGG 0.427960 1.1:-71513280 MS.gene066245:CDS
TTTCACGGAATCCGCTGTCT+TGG 0.428216 1.1:+71515352 None:intergenic
AAGTTTAGACCTTGAATACT+TGG 0.428867 1.1:+71513971 None:intergenic
ATTTGTTGCAGAAAAGGATT+GGG 0.432529 1.1:-71515103 MS.gene066245:intron
TTAGTCTTTCTTCTAACCAT+TGG 0.438719 1.1:+71516405 None:intergenic
ATGTCTCAGGTTGCAACCAC+TGG 0.442324 1.1:-71516853 MS.gene066245:CDS
TGTTTCCATATGCAGAAGAA+TGG 0.453443 1.1:-71512810 MS.gene066245:intron
AATTTGTTGCAGAAAAGGAT+TGG 0.453541 1.1:-71515104 MS.gene066245:intron
GTTGCCTTCCACTTTGTACA+AGG 0.457075 1.1:+71512760 None:intergenic
TCAATTATTACTGCATCTGA+TGG 0.461675 1.1:-71514808 MS.gene066245:CDS
TCTCTCTACTACAATGTCTC+AGG 0.466077 1.1:-71516866 None:intergenic
AATTTGTGGCGGCTACTGTT+CGG 0.466689 1.1:+71512700 None:intergenic
TAATATTGGCCAAGTATTCA+AGG 0.466771 1.1:-71513980 MS.gene066245:intron
TTTGTCAATGATGTCGAAGA+AGG 0.468350 1.1:-71515957 MS.gene066245:CDS
AGGTGGTATGATGTCCTTCT+TGG 0.469108 1.1:-71515381 MS.gene066245:CDS
GTAATAATTGAATGCAAGTT+CGG 0.469193 1.1:+71514820 None:intergenic
CATATTTGTGGCTACAATAA+CGG 0.474034 1.1:+71514392 None:intergenic
TGAGGTTGTGAAGCAAAGCT+TGG 0.480438 1.1:+71516711 None:intergenic
ATGGTTGCAAGAGGAGATCT+TGG 0.484762 1.1:-71514610 MS.gene066245:CDS
TAATGCACACCGTAGCATTA+CGG 0.486804 1.1:-71514038 MS.gene066245:CDS
GGGGACATGCTTCTTGTTGA+CGG 0.487278 1.1:-71515936 MS.gene066245:intron
TCCAAGGGTATTAGACATCA+TGG 0.487729 1.1:+71513786 None:intergenic
AGAGACATTCACAAAAGCCT+TGG 0.488109 1.1:-71513218 MS.gene066245:CDS
TCGTAAGAGGGAGGTTTGAA+TGG 0.491999 1.1:+71516828 None:intergenic
AAAGTCTAACCAGTGATTGA+AGG 0.493534 1.1:+71515257 None:intergenic
CAATTATTACTGCATCTGAT+GGG 0.495858 1.1:-71514807 MS.gene066245:CDS
TACCTCTGCTCTGGTTGGCG+TGG 0.497055 1.1:+71514347 None:intergenic
AAAGCGGAACCTCCTCAATA+GGG 0.498685 1.1:+71514578 None:intergenic
AGAGGTTGAAACTTAATTTG+TGG 0.499961 1.1:+71512686 None:intergenic
AAGAATGGAATGGTTAAAGA+AGG 0.500527 1.1:-71512795 MS.gene066245:CDS
TCCAGAAAGCATTATTCCAT+CGG 0.500745 1.1:+71514293 None:intergenic
TATTGTAGCCACAAATATGC+TGG 0.504931 1.1:-71514388 MS.gene066245:CDS
CTTTCTTGCATTGATGGGTG+AGG 0.505320 1.1:+71516693 None:intergenic
GGGTCCTGAGGTTAGGAGTG+GGG 0.506757 1.1:-71516081 MS.gene066245:CDS
CAGAGTGGCGTTGGAACTGC+TGG 0.507274 1.1:-71516005 MS.gene066245:CDS
ACCATGATGTCTAATACCCT+TGG 0.514111 1.1:-71513787 MS.gene066245:CDS
TTTACTATCCAGAGTGGCGT+TGG 0.515163 1.1:-71516014 MS.gene066245:CDS
ATCCTGAAGTGGGTCGTAAG+AGG 0.515645 1.1:+71516815 None:intergenic
GAAAGTTATTGATTTGGTCA+AGG 0.519341 1.1:-71516265 MS.gene066245:CDS
GCAACACTGCCTTCAATCAC+TGG 0.520688 1.1:-71515266 MS.gene066245:intron
TTGGTGGCCATGCAGGAAAA+GGG 0.523975 1.1:-71513308 MS.gene066245:intron
TGCAATTATGCTTGACACCA+AGG 0.524078 1.1:-71516211 MS.gene066245:intron
TCCTGAAGTGGGTCGTAAGA+GGG 0.525049 1.1:+71516816 None:intergenic
AATATCAGATACCTCTGCTC+TGG 0.526914 1.1:+71514338 None:intergenic
GGGGATTGTTAGACTTAGGT+GGG 0.527984 1.1:+71516734 None:intergenic
GTGGAATGGAACCTCCATAT+AGG 0.530502 1.1:+71512738 None:intergenic
TGCATCCTTAACGAAAGAAA+CGG 0.532070 1.1:+71515038 None:intergenic
GAAGTAGCCCTTGTACAAAG+TGG 0.532110 1.1:-71512768 MS.gene066245:CDS
AGGGTCCTGAGGTTAGGAGT+GGG 0.537150 1.1:-71516082 MS.gene066245:CDS
CAGCAGTTCCAACGCCACTC+TGG 0.538986 1.1:+71516006 None:intergenic
TTGAGCCATTATCGACCTGC+AGG 0.540869 1.1:-71513718 MS.gene066245:CDS
AATAAGGATATGCCGTAGCA+TGG 0.541078 1.1:-71514421 MS.gene066245:CDS
AGGTGTCTGTCCTATTTACA+TGG 0.542712 1.1:-71513260 MS.gene066245:CDS
AAAGCAAATATGGTGCCTGC+AGG 0.543058 1.1:+71513703 None:intergenic
TTAGGTGGCATCTGCCCACT+TGG 0.546105 1.1:+71514000 None:intergenic
TTGTCAATGATGTCGAAGAA+GGG 0.547334 1.1:-71515956 MS.gene066245:CDS
TAGGGTCCTGAGGTTAGGAG+TGG 0.547849 1.1:-71516083 MS.gene066245:CDS
GAAAAGGGTACAACAGAGGT+TGG 0.552967 1.1:-71513293 MS.gene066245:CDS
ATTGCAATTGCTGTTCGAGA+AGG 0.562992 1.1:-71514318 MS.gene066245:CDS
GGCTTCTGTCCGTAATGCTA+CGG 0.565887 1.1:+71514029 None:intergenic
TGGTCCTTCTACTAATACAA+AGG 0.568271 1.1:-71516367 MS.gene066245:CDS
AAATCCCCACTCCTAACCTC+AGG 0.568605 1.1:+71516077 None:intergenic
AGACAACAGTTGAAGTTCCA+AGG 0.570123 1.1:+71513770 None:intergenic
TATTAGACATCATGGTTGCA+TGG 0.573097 1.1:+71513794 None:intergenic
TAACGGCCTTTCCCATGCTA+CGG 0.580211 1.1:+71514409 None:intergenic
TTGCCTTCCACTTTGTACAA+GGG 0.582360 1.1:+71512761 None:intergenic
AGGGACAACTTCAGCAGATG+AGG 0.586458 1.1:+71516669 None:intergenic
TGGTGCAGAACTCCCTATTG+AGG 0.586537 1.1:-71514590 MS.gene066245:CDS
GAGGACTTTCTTGCATTGAT+GGG 0.588996 1.1:+71516688 None:intergenic
AATCATCTTCGGGTGATACA+GGG 0.589652 1.1:+71516650 None:intergenic
GTAATGTTTCTGGTGGAATG+TGG 0.589846 1.1:-71516434 MS.gene066245:CDS
CTTTCTGGAGAAACTGCACA+TGG 0.592158 1.1:-71514279 MS.gene066245:CDS
ATCACCCGAAGATGATTCAA+AGG 0.592363 1.1:-71516644 MS.gene066245:intron
TCAGATACCTCTGCTCTGGT+TGG 0.594373 1.1:+71514342 None:intergenic
AATACTTGGCCAATATTAGG+TGG 0.594417 1.1:+71513985 None:intergenic
CCATATGCAGAAGAATGGAA+TGG 0.594857 1.1:-71512805 MS.gene066245:intron
CAAGTTGGTAATGTTTCTGG+TGG 0.597270 1.1:-71516441 MS.gene066245:CDS
CTTCAGGATCTACACATGAC+AGG 0.598783 1.1:-71516801 MS.gene066245:CDS
ATAAGGATATGCCGTAGCAT+GGG 0.599769 1.1:-71514420 MS.gene066245:CDS
GTTGTGAAGCAAAGCTTGGG+GGG 0.600193 1.1:+71516715 None:intergenic
GACAACAGTTGAAGTTCCAA+GGG 0.600278 1.1:+71513771 None:intergenic
AATTATTACTGCATCTGATG+GGG 0.603859 1.1:-71514806 MS.gene066245:intron
AATTACCTGCAACAAATCCA+AGG 0.604246 1.1:+71513201 None:intergenic
AAAAGATGGAGGCTTTAACA+AGG 0.604406 1.1:+71516771 None:intergenic
TAGCCCTTGTACAAAGTGGA+AGG 0.605384 1.1:-71512764 MS.gene066245:CDS
TGTCAATGATGTCGAAGAAG+GGG 0.607214 1.1:-71515955 MS.gene066245:CDS
ATGCAAACATCTCGCTCATG+TGG 0.611672 1.1:+71513818 None:intergenic
CCTGAATATTGTGAGTGGAA+TGG 0.615998 1.1:+71512724 None:intergenic
GCTGTTCGAGAAGGTTCCGA+TGG 0.616692 1.1:-71514309 MS.gene066245:CDS
CAGAAGCCGCTTTACCAAGT+GGG 0.616792 1.1:-71514014 MS.gene066245:CDS
TTGTGGTGTATAGATTGAGG+CGG 0.618279 1.1:-71516490 MS.gene066245:intron
TGCAGAACTCCCTATTGAGG+AGG 0.618747 1.1:-71514587 MS.gene066245:CDS
GTCCAGGCTATGGTTGCAAG+AGG 0.621810 1.1:-71514619 MS.gene066245:intron
ATGGAGGAGAGCTCGCGTCA+CGG 0.623292 1.1:-71515316 MS.gene066245:CDS
CATCTGCCCACTTGGTAAAG+CGG 0.628930 1.1:+71514008 None:intergenic
TGTCTTGGACTTAACCAAGA+AGG 0.629593 1.1:+71515367 None:intergenic
AGGTTGTGAAGCAAAGCTTG+GGG 0.630895 1.1:+71516713 None:intergenic
GTGAAATGCGAAGTTATCGA+TGG 0.631985 1.1:-71515335 MS.gene066245:CDS
GGTTGAAACTTAATTTGTGG+CGG 0.634449 1.1:+71512689 None:intergenic
GGAGGTTTGAATGGATCCAG+TGG 0.635775 1.1:+71516837 None:intergenic
CCCCACGCCAACCAGAGCAG+AGG 0.642045 1.1:-71514349 MS.gene066245:CDS
GATATGCCGTAGCATGGGAA+AGG 0.644726 1.1:-71514415 MS.gene066245:CDS
GGTTGTGAAGCAAAGCTTGG+GGG 0.646649 1.1:+71516714 None:intergenic
CCTCTGCTCTGGTTGGCGTG+GGG 0.646850 1.1:+71514349 None:intergenic
ACAGAAGCCGCTTTACCAAG+TGG 0.649319 1.1:-71514015 MS.gene066245:CDS
GCTCGTATGAATATGTCTCA+TGG 0.651990 1.1:-71516306 MS.gene066245:CDS
AAATGCGAAGTTATCGATGG+AGG 0.652757 1.1:-71515332 MS.gene066245:CDS
CTTGGTTAAGTCCAAGACAG+CGG 0.652841 1.1:-71515363 MS.gene066245:CDS
GTCATGTGTAGATCCTGAAG+TGG 0.656544 1.1:+71516804 None:intergenic
TGGAATGTGGTCTAAGCCAA+TGG 0.668652 1.1:-71516421 MS.gene066245:CDS
TGAAGTGGGTCGTAAGAGGG+AGG 0.672720 1.1:+71516819 None:intergenic
GTGGAAGGCAACCTATATGG+AGG 0.675974 1.1:-71512749 MS.gene066245:CDS
AATGATTTGGAAACTTGCTG+AGG 0.679513 1.1:-71516343 MS.gene066245:CDS
TCATGTGTAGATCCTGAAGT+GGG 0.693391 1.1:+71516805 None:intergenic
TCGGACCTGAATATTGTGAG+TGG 0.700079 1.1:+71512719 None:intergenic
GCAGGAAAAGGGTACAACAG+AGG 0.715152 1.1:-71513297 MS.gene066245:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAACAAATTAAAATTAAAA+TGG + chr1.1:71516708-71516727 None:intergenic 10.0%
!!! AATTTATTTTTCTGTTTTTT+AGG - chr1.1:71513449-71513468 MS.gene066245:intron 10.0%
!!! ATTTATTTTTCTGTTTTTTA+GGG - chr1.1:71513450-71513469 MS.gene066245:intron 10.0%
!! AATAAGAAATTATCAAGAAT+GGG + chr1.1:71514331-71514350 None:intergenic 15.0%
!! AATTTAACAAATAACAGTTA+TGG - chr1.1:71516433-71516452 MS.gene066245:CDS 15.0%
!! ACAAATAAACTTTAATGAAA+AGG + chr1.1:71513379-71513398 None:intergenic 15.0%
!! TAATAAGAAATTATCAAGAA+TGG + chr1.1:71514332-71514351 None:intergenic 15.0%
!! TTTCATTAAAGTTTATTTGT+TGG - chr1.1:71513379-71513398 MS.gene066245:intron 15.0%
!!! AGATTATTTTGAAATGTATT+GGG - chr1.1:71515998-71516017 MS.gene066245:CDS 15.0%
!! AACTGAAATTGAAGAAATAT+CGG + chr1.1:71515348-71515367 None:intergenic 20.0%
!! ACAAATTAATGAAATAATGC+AGG + chr1.1:71514783-71514802 None:intergenic 20.0%
!! AGAAGTTCATAAATGTATAA+AGG + chr1.1:71516570-71516589 None:intergenic 20.0%
!! CACAATTCAACAAAATAAAT+CGG + chr1.1:71516143-71516162 None:intergenic 20.0%
!! CTTAGAAAGGAATATAAATA+TGG - chr1.1:71515368-71515387 MS.gene066245:CDS 20.0%
!! CTTTAATGAAAAGGAAAAAA+AGG + chr1.1:71513370-71513389 None:intergenic 20.0%
!! TCATAAGGAAAAAAAATGAT+GGG - chr1.1:71512978-71512997 MS.gene066245:intron 20.0%
!! TTCATAAGGAAAAAAAATGA+TGG - chr1.1:71512977-71512996 MS.gene066245:intron 20.0%
!! TTTCCTCTCATATTATTATT+TGG - chr1.1:71516475-71516494 MS.gene066245:CDS 20.0%
!!! AGTGAGAAAATTTGATTTTT+AGG - chr1.1:71513003-71513022 MS.gene066245:intron 20.0%
!!! GAAATGTGATTTATTCTTTT+TGG - chr1.1:71515700-71515719 MS.gene066245:intron 20.0%
!!! GAGATTATTTTGAAATGTAT+TGG - chr1.1:71515997-71516016 MS.gene066245:CDS 20.0%
!!! TAGTCTTACCTTTTTTTTTT+GGG - chr1.1:71516052-71516071 MS.gene066245:CDS 20.0%
!!! TCATAAGAAAGTTATTGATT+TGG - chr1.1:71513280-71513299 MS.gene066245:CDS 20.0%
!!! TTAGTCTTACCTTTTTTTTT+TGG - chr1.1:71516051-71516070 MS.gene066245:CDS 20.0%
! AAAGGTAAGACTAATTATTG+AGG + chr1.1:71516045-71516064 None:intergenic 25.0%
! AAGCCAAATAATAATATGAG+AGG + chr1.1:71516481-71516500 None:intergenic 25.0%
! AATTAGAACTGAACTCTAAT+TGG - chr1.1:71516662-71516681 MS.gene066245:CDS 25.0%
! ACAAAATAAATCGGATTGAT+CGG + chr1.1:71516134-71516153 None:intergenic 25.0%
! ACTAAGATTGTTTGTACTAT+TGG - chr1.1:71513164-71513183 MS.gene066245:intron 25.0%
! ATAATCTCTCAAACATACTT+AGG + chr1.1:71515985-71516004 None:intergenic 25.0%
! ATATCCAACCCAAAAAAAAA+AGG + chr1.1:71516063-71516082 None:intergenic 25.0%
! ATGTATTGGGTTAAATTGTT+TGG - chr1.1:71516011-71516030 MS.gene066245:CDS 25.0%
! ATTTCCTTTGTATTAGTAGA+AGG + chr1.1:71513191-71513210 None:intergenic 25.0%
! CTAATACAAAGGAAATGATT+TGG - chr1.1:71513195-71513214 MS.gene066245:intron 25.0%
! GTAATAATTGAATGCAAGTT+CGG + chr1.1:71514734-71514753 None:intergenic 25.0%
! TAATGAAATAATGCAGGATT+AGG + chr1.1:71514777-71514796 None:intergenic 25.0%
! TCGGAAGATATCTTTAATAT+GGG - chr1.1:71516374-71516393 MS.gene066245:CDS 25.0%
! TGTACTAAATAGGTTATTGT+GGG - chr1.1:71513910-71513929 MS.gene066245:intron 25.0%
! TTCAATTTCAGTTCTTAGAA+AGG - chr1.1:71515355-71515374 MS.gene066245:CDS 25.0%
! TTCGGAAGATATCTTTAATA+TGG - chr1.1:71516373-71516392 MS.gene066245:CDS 25.0%
! TTGTCAAATAGTTGTTATAG+TGG + chr1.1:71513974-71513993 None:intergenic 25.0%
!! CTTTTCTGCAACAAATTAAA+AGG + chr1.1:71514444-71514463 None:intergenic 25.0%
!! GCTAAAGATTTATGTTTCTA+CGG + chr1.1:71514851-71514870 None:intergenic 25.0%
!!! CTTTTAATTTGTTGCAGAAA+AGG - chr1.1:71514442-71514461 MS.gene066245:intron 25.0%
!!! TAGTCATCTTCTATTTTAAG+AGG + chr1.1:71515920-71515939 None:intergenic 25.0%
!!! TTTTGTTCACTGATTTATTC+TGG - chr1.1:71514881-71514900 MS.gene066245:intron 25.0%
AACTAATCAGTGGTACTAAT+TGG + chr1.1:71514612-71514631 None:intergenic 30.0%
AAGAATGGAATGGTTAAAGA+AGG - chr1.1:71516756-71516775 MS.gene066245:CDS 30.0%
AAGTTTAGACCTTGAATACT+TGG + chr1.1:71515583-71515602 None:intergenic 30.0%
AATTATTACTGCATCTGATG+GGG - chr1.1:71514745-71514764 MS.gene066245:intron 30.0%
ACAAACCTTTGAATCATCTT+CGG + chr1.1:71512915-71512934 None:intergenic 30.0%
AGCGAAATAAGAATAAGAGA+TGG + chr1.1:71512945-71512964 None:intergenic 30.0%
AGTCAGAAATTCACATAAGA+TGG + chr1.1:71514135-71514154 None:intergenic 30.0%
ATACACCACAAAAACCAAAA+GGG + chr1.1:71513052-71513071 None:intergenic 30.0%
CAACCAATCTTGTTAAAAAC+TGG - chr1.1:71513501-71513520 MS.gene066245:intron 30.0%
CAATTATTACTGCATCTGAT+GGG - chr1.1:71514744-71514763 MS.gene066245:intron 30.0%
CATAAATGTATAAAGGTCGA+TGG + chr1.1:71516563-71516582 None:intergenic 30.0%
CATATTTGTGGCTACAATAA+CGG + chr1.1:71515162-71515181 None:intergenic 30.0%
CGGCAATGAATAAAATATTC+CGG - chr1.1:71515669-71515688 MS.gene066245:intron 30.0%
CTGATCAGTAAAAGCAAATA+TGG + chr1.1:71515861-71515880 None:intergenic 30.0%
CTGTACTAAATAGGTTATTG+TGG - chr1.1:71513909-71513928 MS.gene066245:intron 30.0%
GATAACACTCTGTACTAAAT+AGG - chr1.1:71513900-71513919 MS.gene066245:intron 30.0%
GCGAAATAAGAATAAGAGAT+GGG + chr1.1:71512944-71512963 None:intergenic 30.0%
GTGCTAAATGATTGATGAAT+CGG - chr1.1:71513692-71513711 MS.gene066245:intron 30.0%
TAAATATTGTCTGCTGCAAA+GGG - chr1.1:71513761-71513780 MS.gene066245:CDS 30.0%
TAATATTGGCCAAGTATTCA+AGG - chr1.1:71515571-71515590 MS.gene066245:intron 30.0%
TATACACCACAAAAACCAAA+AGG + chr1.1:71513053-71513072 None:intergenic 30.0%
TCAATTATTACTGCATCTGA+TGG - chr1.1:71514743-71514762 MS.gene066245:intron 30.0%
TCAGAGAATTCCATGTAAAT+AGG + chr1.1:71516304-71516323 None:intergenic 30.0%
TCGAACATTTAACCATGTAT+AGG - chr1.1:71516506-71516525 MS.gene066245:intron 30.0%
TTAAATATTGTCTGCTGCAA+AGG - chr1.1:71513760-71513779 MS.gene066245:CDS 30.0%
TTGAATACTTGGCCAATATT+AGG + chr1.1:71515572-71515591 None:intergenic 30.0%
! AACAATTTTACCTGCAAAAG+CGG + chr1.1:71514992-71515011 None:intergenic 30.0%
! AACTCAGTTGACATTTTCAT+TGG + chr1.1:71516633-71516652 None:intergenic 30.0%
! AGCTTTGACATTCTTATTGT+TGG - chr1.1:71514048-71514067 MS.gene066245:CDS 30.0%
! ATTACTTTCGCAGCTTTAAT+TGG + chr1.1:71515497-71515516 None:intergenic 30.0%
! ATTTGTTGCAGAAAAGGATT+GGG - chr1.1:71514448-71514467 MS.gene066245:intron 30.0%
! CTTCTGTTTCTTGTTTCATA+AGG - chr1.1:71512963-71512982 MS.gene066245:intron 30.0%
! GTGTTGTCATTTGTCAATTA+CGG - chr1.1:71513813-71513832 MS.gene066245:CDS 30.0%
! TTAGTCTTTCTTCTAACCAT+TGG + chr1.1:71513149-71513168 None:intergenic 30.0%
! TTTTTGTGGTGTATAGATTG+AGG - chr1.1:71513058-71513077 MS.gene066245:intron 30.0%
!! AACTACCCTCATTTTAATGT+CGG - chr1.1:71515649-71515668 MS.gene066245:intron 30.0%
!! AAGATTTTGGAGGAAAAAGA+TGG + chr1.1:71512797-71512816 None:intergenic 30.0%
!! AATTTGTTGCAGAAAAGGAT+TGG - chr1.1:71514447-71514466 MS.gene066245:intron 30.0%
!! AGAAGTTCTTAGAAGTACTA+TGG + chr1.1:71516413-71516432 None:intergenic 30.0%
!! ATTTGACAACATTGATTCCA+AGG - chr1.1:71513985-71514004 MS.gene066245:CDS 30.0%
!! GAAAGTTATTGATTTGGTCA+AGG - chr1.1:71513286-71513305 MS.gene066245:CDS 30.0%
!! GTTTTTAACAAGATTGGTTG+TGG + chr1.1:71513501-71513520 None:intergenic 30.0%
!! TCATTAATTTGTTGCCTAAC+TGG - chr1.1:71514791-71514810 MS.gene066245:intron 30.0%
!!! CTTACCTTTTTTTTTTGGGT+TGG - chr1.1:71516056-71516075 MS.gene066245:CDS 30.0%
!!! CTTTGTTGTTGACCTAATTT+TGG - chr1.1:71516224-71516243 MS.gene066245:CDS 30.0%
!!! GATTTGTTGCAGGTAATTTT+CGG - chr1.1:71516355-71516374 MS.gene066245:CDS 30.0%
!!! TTTGGTGTTTTCTCGATAAT+TGG - chr1.1:71515052-71515071 MS.gene066245:CDS 30.0%
AAAGTCTAACCAGTGATTGA+AGG + chr1.1:71514297-71514316 None:intergenic 35.0%
AAATATTGTCTGCTGCAAAG+GGG - chr1.1:71513762-71513781 MS.gene066245:CDS 35.0%
AACTGTTGTCTTCACTAGAT+CGG - chr1.1:71515793-71515812 MS.gene066245:intron 35.0%
AAGGAAAAAAAGGCTTACCT+TGG + chr1.1:71513360-71513379 None:intergenic 35.0%
AATACTTGGCCAATATTAGG+TGG + chr1.1:71515569-71515588 None:intergenic 35.0%
AATCACATTTCAGTGTCAAC+CGG + chr1.1:71515691-71515710 None:intergenic 35.0%
AATCTTGTTAAAAACTGGCC+AGG - chr1.1:71513506-71513525 MS.gene066245:intron 35.0%
AATTACCTGCAACAAATCCA+AGG + chr1.1:71516353-71516372 None:intergenic 35.0%
AGGTTTAAGCAACAAGAGAA+AGG + chr1.1:71515900-71515919 None:intergenic 35.0%
ATCGATAACTTCGCATTTCA+CGG + chr1.1:71514217-71514236 None:intergenic 35.0%
ATCGGATTGATCGGTTAATA+AGG + chr1.1:71516125-71516144 None:intergenic 35.0%
CAAACCTTTGAATCATCTTC+GGG + chr1.1:71512914-71512933 None:intergenic 35.0%
CAATGCAGGAAGAGATAATA+AGG - chr1.1:71515114-71515133 MS.gene066245:intron 35.0%
CATACTTTCCAGCATATTTG+TGG + chr1.1:71515174-71515193 None:intergenic 35.0%
CATTGCCGACATTAAAATGA+GGG + chr1.1:71515657-71515676 None:intergenic 35.0%
GAAGAAATATCGGAATGTCA+AGG + chr1.1:71515338-71515357 None:intergenic 35.0%
GACAGAAAGCGACAATAATA+TGG - chr1.1:71515450-71515469 MS.gene066245:intron 35.0%
GATTGGGATGACATCAAATT+TGG - chr1.1:71514464-71514483 MS.gene066245:intron 35.0%
GGATAGTAAAAGTGAATTCC+TGG + chr1.1:71513527-71513546 None:intergenic 35.0%
GTCAATTTCCTATCTATCTC+TGG - chr1.1:71514079-71514098 MS.gene066245:intron 35.0%
GTTGGTATGATGATATCTTC+AGG - chr1.1:71513397-71513416 MS.gene066245:intron 35.0%
TAACTATGCACATTGAGATG+TGG + chr1.1:71515315-71515334 None:intergenic 35.0%
TAAGCAACAAGAGAAAGGTA+GGG + chr1.1:71515895-71515914 None:intergenic 35.0%
TAATCGAGCAAACTAATCAG+TGG + chr1.1:71514622-71514641 None:intergenic 35.0%
TATAGGTTCATTCATGCATG+CGG - chr1.1:71516523-71516542 MS.gene066245:intron 35.0%
TATTAGACATCATGGTTGCA+TGG + chr1.1:71515760-71515779 None:intergenic 35.0%
TATTGTAGCCACAAATATGC+TGG - chr1.1:71515163-71515182 MS.gene066245:intron 35.0%
TCATTGCCGACATTAAAATG+AGG + chr1.1:71515658-71515677 None:intergenic 35.0%
TGACTCTTGATGTATGATGT+AGG - chr1.1:71514150-71514169 MS.gene066245:intron 35.0%
TGATGATATCTTCAGGATCA+CGG - chr1.1:71513404-71513423 MS.gene066245:intron 35.0%
TGCATCCTTAACGAAAGAAA+CGG + chr1.1:71514516-71514535 None:intergenic 35.0%
TGCATGAATGAACCTATACA+TGG + chr1.1:71516521-71516540 None:intergenic 35.0%
TGGTCCTTCTACTAATACAA+AGG - chr1.1:71513184-71513203 MS.gene066245:intron 35.0%
TGTTTCCATATGCAGAAGAA+TGG - chr1.1:71516741-71516760 MS.gene066245:CDS 35.0%
TTAAGCAACAAGAGAAAGGT+AGG + chr1.1:71515896-71515915 None:intergenic 35.0%
TTGTCAATGATGTCGAAGAA+GGG - chr1.1:71513595-71513614 MS.gene066245:intron 35.0%
TTTGTCAATGATGTCGAAGA+AGG - chr1.1:71513594-71513613 MS.gene066245:intron 35.0%
! AAAAGATGGAGGCTTTAACA+AGG + chr1.1:71512783-71512802 None:intergenic 35.0%
! TGGCCAGTTTTTAACAAGAT+TGG + chr1.1:71513507-71513526 None:intergenic 35.0%
! TGTTGTTGACCTAATTTTGG+TGG - chr1.1:71516227-71516246 MS.gene066245:CDS 35.0%
! TTACACGTTTTGCAACAAGT+TGG - chr1.1:71513095-71513114 MS.gene066245:intron 35.0%
! TTCAATCACTGGTTAGACTT+TGG - chr1.1:71514296-71514315 MS.gene066245:CDS 35.0%
!! AATGATTTGGAAACTTGCTG+AGG - chr1.1:71513208-71513227 MS.gene066245:CDS 35.0%
!! AGTTCTTAGAAGTACTATGG+AGG + chr1.1:71516410-71516429 None:intergenic 35.0%
!! ATTTTGGAGGAAAAAGATGG+AGG + chr1.1:71512794-71512813 None:intergenic 35.0%
!! CAACAAGTTGGTAATGTTTC+TGG - chr1.1:71513107-71513126 MS.gene066245:intron 35.0%
!! TAAGGTTATGTTGGTTTCCA+AGG - chr1.1:71514407-71514426 MS.gene066245:CDS 35.0%
!! TCCAGAAAGCATTATTCCAT+CGG + chr1.1:71515261-71515280 None:intergenic 35.0%
!! TTCACTTTTACTATCCAGAG+TGG - chr1.1:71513531-71513550 MS.gene066245:intron 35.0%
AAAAGGAATGTTATGCGCCT+TGG + chr1.1:71514427-71514446 None:intergenic 40.0%
AAAGTGGAAGGCAACCTATA+TGG - chr1.1:71516799-71516818 MS.gene066245:CDS 40.0%
AAATGCGAAGTTATCGATGG+AGG - chr1.1:71514219-71514238 MS.gene066245:intron 40.0%
AAGCAACAAGAGAAAGGTAG+GGG + chr1.1:71515894-71515913 None:intergenic 40.0%
AATAAGGATATGCCGTAGCA+TGG - chr1.1:71515130-71515149 MS.gene066245:intron 40.0%
AATATCAGATACCTCTGCTC+TGG + chr1.1:71515216-71515235 None:intergenic 40.0%
AATATTGTCTGCTGCAAAGG+GGG - chr1.1:71513763-71513782 MS.gene066245:CDS 40.0%
AATCATCTTCGGGTGATACA+GGG + chr1.1:71512904-71512923 None:intergenic 40.0%
ACAGGATGGTAAAAGAAGAC+AGG + chr1.1:71514914-71514933 None:intergenic 40.0%
ACCATGATGTCTAATACCCT+TGG - chr1.1:71515764-71515783 MS.gene066245:intron 40.0%
ACTGTTGTCTTCACTAGATC+GGG - chr1.1:71515794-71515813 MS.gene066245:intron 40.0%
AGACAACAGTTGAAGTTCCA+AGG + chr1.1:71515784-71515803 None:intergenic 40.0%
AGAGACATTCACAAAAGCCT+TGG - chr1.1:71516333-71516352 MS.gene066245:CDS 40.0%
AGCACCAAGTCTTTGATTGT+AGG - chr1.1:71514109-71514128 MS.gene066245:intron 40.0%
AGGTGTCTGTCCTATTTACA+TGG - chr1.1:71516291-71516310 MS.gene066245:CDS 40.0%
ATAAGGATATGCCGTAGCAT+GGG - chr1.1:71515131-71515150 MS.gene066245:intron 40.0%
ATCACCCGAAGATGATTCAA+AGG - chr1.1:71512907-71512926 MS.gene066245:intron 40.0%
ATGCATGCGGTAATTAACCA+CGG - chr1.1:71516536-71516555 MS.gene066245:intron 40.0%
ATGGCCTACAATCAAAGACT+TGG + chr1.1:71514116-71514135 None:intergenic 40.0%
CAATTCCACTCATCAAATGC+AGG - chr1.1:71514656-71514675 MS.gene066245:intron 40.0%
CATTTGTCAATTACGGATCG+CGG - chr1.1:71513820-71513839 MS.gene066245:CDS 40.0%
CCATATGCAGAAGAATGGAA+TGG - chr1.1:71516746-71516765 MS.gene066245:CDS 40.0%
CCATTCCACTCACAATATTC+AGG - chr1.1:71516827-71516846 MS.gene066245:CDS 40.0%
CCATTCCATTCTTCTGCATA+TGG + chr1.1:71516749-71516768 None:intergenic 40.0%
CCTGAATATTGTGAGTGGAA+TGG + chr1.1:71516830-71516849 None:intergenic 40.0%
CGGAGACATTTGAATGTTAG+AGG - chr1.1:71514255-71514274 MS.gene066245:intron 40.0%
CTCTTGATGTATGATGTAGG+TGG - chr1.1:71514153-71514172 MS.gene066245:intron 40.0%
CTTTCGTCTTCTCTGTATGT+GGG - chr1.1:71514364-71514383 MS.gene066245:CDS 40.0%
GACAACAGTTGAAGTTCCAA+GGG + chr1.1:71515783-71515802 None:intergenic 40.0%
GCTCGTATGAATATGTCTCA+TGG - chr1.1:71513245-71513264 MS.gene066245:CDS 40.0%
GTGAAATGCGAAGTTATCGA+TGG - chr1.1:71514216-71514235 MS.gene066245:intron 40.0%
TAATCCCGATTCTCCAAATC+AGG + chr1.1:71514817-71514836 None:intergenic 40.0%
TAATGCACACCGTAGCATTA+CGG - chr1.1:71515513-71515532 MS.gene066245:intron 40.0%
TATCTTCAGGATCACGGTAT+CGG - chr1.1:71513410-71513429 MS.gene066245:intron 40.0%
TCATGTGTAGATCCTGAAGT+GGG + chr1.1:71512749-71512768 None:intergenic 40.0%
TCCATAATGCTTGTCAATGC+AGG - chr1.1:71515100-71515119 MS.gene066245:intron 40.0%
TCCGATGGAATAATGCTTTC+TGG - chr1.1:71515257-71515276 MS.gene066245:intron 40.0%
TCTTTCGTCTTCTCTGTATG+TGG - chr1.1:71514363-71514382 MS.gene066245:CDS 40.0%
TGAGGACTTTCTTGCATTGA+TGG + chr1.1:71512867-71512886 None:intergenic 40.0%
TGCAATTATGCTTGACACCA+AGG - chr1.1:71513340-71513359 MS.gene066245:intron 40.0%
TGTCAATGATGTCGAAGAAG+GGG - chr1.1:71513596-71513615 MS.gene066245:intron 40.0%
TGTCTTGGACTTAACCAAGA+AGG + chr1.1:71514187-71514206 None:intergenic 40.0%
TTGCCTTCCACTTTGTACAA+GGG + chr1.1:71516793-71516812 None:intergenic 40.0%
TTGTGGTGTATAGATTGAGG+CGG - chr1.1:71513061-71513080 MS.gene066245:intron 40.0%
! AGACTTAGGTGGGAAGATTT+TGG + chr1.1:71512810-71512829 None:intergenic 40.0%
! ATTGCAATTGCTGTTCGAGA+AGG - chr1.1:71515233-71515252 MS.gene066245:intron 40.0%
! CTATGCCGTTTCTTTCGTTA+AGG - chr1.1:71514508-71514527 MS.gene066245:intron 40.0%
! GAAAATTGCTGTGACCCTTT+TGG - chr1.1:71513035-71513054 MS.gene066245:intron 40.0%
! GAGGACTTTCTTGCATTGAT+GGG + chr1.1:71512866-71512885 None:intergenic 40.0%
! TCCTGCATTGACAAGCATTA+TGG + chr1.1:71515104-71515123 None:intergenic 40.0%
!! AAAAGCCTTGGATTTGTTGC+AGG - chr1.1:71516345-71516364 MS.gene066245:CDS 40.0%
!! CAAGTTGGTAATGTTTCTGG+TGG - chr1.1:71513110-71513129 MS.gene066245:intron 40.0%
!! GTAATGTTTCTGGTGGAATG+TGG - chr1.1:71513117-71513136 MS.gene066245:intron 40.0%
!! TCCAAGGGTATTAGACATCA+TGG + chr1.1:71515768-71515787 None:intergenic 40.0%
!!! TGTGACCCTTTTGGTTTTTG+TGG - chr1.1:71513044-71513063 MS.gene066245:intron 40.0%
!!! TTCTGTTTTTTAGGGTCCTG+AGG - chr1.1:71513458-71513477 MS.gene066245:intron 40.0%
!!! TTTTTTAGGGTCCTGAGGTT+AGG - chr1.1:71513463-71513482 MS.gene066245:intron 40.0%
AAAAGCGGAACCTCCTCAAT+AGG + chr1.1:71514977-71514996 None:intergenic 45.0%
AAAGCAAATATGGTGCCTGC+AGG + chr1.1:71515851-71515870 None:intergenic 45.0%
AAAGCGGAACCTCCTCAATA+GGG + chr1.1:71514976-71514995 None:intergenic 45.0%
AATTTGTGGCGGCTACTGTT+CGG + chr1.1:71516854-71516873 None:intergenic 45.0%
AGGTGGTATGATGTCCTTCT+TGG - chr1.1:71514170-71514189 MS.gene066245:intron 45.0%
AGGTTGTGAAGCAAAGCTTG+GGG + chr1.1:71512841-71512860 None:intergenic 45.0%
ATGCAAACATCTCGCTCATG+TGG + chr1.1:71515736-71515755 None:intergenic 45.0%
ATGGTTGCAAGAGGAGATCT+TGG - chr1.1:71514941-71514960 MS.gene066245:intron 45.0%
CAGTAGCCGCCACAAATTAA+AGG - chr1.1:71516856-71516875 MS.gene066245:CDS 45.0%
CATGCTTCTTGTTGACGGTA+TGG - chr1.1:71513620-71513639 MS.gene066245:intron 45.0%
CTTCACTAGATCGGGTTTCA+TGG - chr1.1:71515802-71515821 MS.gene066245:intron 45.0%
CTTCAGGATCTACACATGAC+AGG - chr1.1:71512750-71512769 MS.gene066245:CDS 45.0%
CTTGGTTAAGTCCAAGACAG+CGG - chr1.1:71514188-71514207 MS.gene066245:intron 45.0%
GAAGTAGCCCTTGTACAAAG+TGG - chr1.1:71516783-71516802 MS.gene066245:CDS 45.0%
GAATCATCTTCGGGTGATAC+AGG + chr1.1:71512905-71512924 None:intergenic 45.0%
GAGGTTGTGAAGCAAAGCTT+GGG + chr1.1:71512842-71512861 None:intergenic 45.0%
GGGGATTGTTAGACTTAGGT+GGG + chr1.1:71512820-71512839 None:intergenic 45.0%
GTCATGTGTAGATCCTGAAG+TGG + chr1.1:71512750-71512769 None:intergenic 45.0%
GTGGAATGGAACCTCCATAT+AGG + chr1.1:71516816-71516835 None:intergenic 45.0%
GTTGCCTTCCACTTTGTACA+AGG + chr1.1:71516794-71516813 None:intergenic 45.0%
GTTGGGGGTTAAGGTTATGT+TGG - chr1.1:71514398-71514417 MS.gene066245:CDS 45.0%
TAGCCCTTGTACAAAGTGGA+AGG - chr1.1:71516787-71516806 MS.gene066245:CDS 45.0%
TCACGCTTCCAGAGATAGAT+AGG + chr1.1:71514090-71514109 None:intergenic 45.0%
TCGGACCTGAATATTGTGAG+TGG + chr1.1:71516835-71516854 None:intergenic 45.0%
TCGTAAGAGGGAGGTTTGAA+TGG + chr1.1:71512726-71512745 None:intergenic 45.0%
TGAATCGGCAAACACAAGAG+TGG - chr1.1:71513707-71513726 MS.gene066245:CDS 45.0%
TGAGGTTGTGAAGCAAAGCT+TGG + chr1.1:71512843-71512862 None:intergenic 45.0%
TGGAATGTGGTCTAAGCCAA+TGG - chr1.1:71513130-71513149 MS.gene066245:intron 45.0%
TGTATAGATTGAGGCGGAGT+TGG - chr1.1:71513067-71513086 MS.gene066245:intron 45.0%
TTCTCCAAATCAGGCCAGTT+AGG + chr1.1:71514808-71514827 None:intergenic 45.0%
TTGGGGGGATTGTTAGACTT+AGG + chr1.1:71512824-71512843 None:intergenic 45.0%
TTTACTATCCAGAGTGGCGT+TGG - chr1.1:71513537-71513556 MS.gene066245:intron 45.0%
! CTTAGGTGGGAAGATTTTGG+AGG + chr1.1:71512807-71512826 None:intergenic 45.0%
! CTTCTTTTACCATCCTGTCC+AGG - chr1.1:71514916-71514935 MS.gene066245:intron 45.0%
! CTTTCTGGAGAAACTGCACA+TGG - chr1.1:71515272-71515291 MS.gene066245:CDS 45.0%
! CTTTCTTGCATTGATGGGTG+AGG + chr1.1:71512861-71512880 None:intergenic 45.0%
! GAAAAGGGTACAACAGAGGT+TGG - chr1.1:71516258-71516277 MS.gene066245:CDS 45.0%
! TGTTGTACCCTTTTCCTGCA+TGG + chr1.1:71516253-71516272 None:intergenic 45.0%
!! ACATTGATTCCAAGGCAGTG+TGG - chr1.1:71513993-71514012 MS.gene066245:CDS 45.0%
!! ACTGGCCTGATTTGGAGAAT+CGG - chr1.1:71514809-71514828 MS.gene066245:CDS 45.0%
!! ATTTGGAAACTTGCTGAGGC+TGG - chr1.1:71513212-71513231 MS.gene066245:CDS 45.0%
!! CAGAGGTTGGCTTTGTATCA+AGG - chr1.1:71516271-71516290 MS.gene066245:CDS 45.0%
!! TTGGGTTGGATATCTGTGCT+TGG - chr1.1:71516070-71516089 MS.gene066245:CDS 45.0%
!! TAATTGTAAATATAATAATT+TGG - chr1.1:71515034-71515053 MS.gene066245:CDS 5.0%
AAATCCCCACTCCTAACCTC+AGG + chr1.1:71513477-71513496 None:intergenic 50.0%
AAGGGGGTAAGTCTCTGTCT+CGG - chr1.1:71513779-71513798 MS.gene066245:CDS 50.0%
AGGGACAACTTCAGCAGATG+AGG + chr1.1:71512885-71512904 None:intergenic 50.0%
ATCCTGAAGTGGGTCGTAAG+AGG + chr1.1:71512739-71512758 None:intergenic 50.0%
CACAGCCTGCATTTGATGAG+TGG + chr1.1:71514664-71514683 None:intergenic 50.0%
CACTCATCAAATGCAGGCTG+TGG - chr1.1:71514662-71514681 MS.gene066245:intron 50.0%
CATCTGCCCACTTGGTAAAG+CGG + chr1.1:71515546-71515565 None:intergenic 50.0%
CCTGCATGGCCACCAAAATT+AGG + chr1.1:71516239-71516258 None:intergenic 50.0%
GATATGCCGTAGCATGGGAA+AGG - chr1.1:71515136-71515155 MS.gene066245:intron 50.0%
GCAACACTGCCTTCAATCAC+TGG - chr1.1:71514285-71514304 MS.gene066245:CDS 50.0%
GGAGGTTTGAATGGATCCAG+TGG + chr1.1:71512717-71512736 None:intergenic 50.0%
GGCTTCTGTCCGTAATGCTA+CGG + chr1.1:71515525-71515544 None:intergenic 50.0%
GGGCAGATGCCACCTAATAT+TGG - chr1.1:71515557-71515576 MS.gene066245:intron 50.0%
GGGGACATGCTTCTTGTTGA+CGG - chr1.1:71513615-71513634 MS.gene066245:intron 50.0%
GGGGGATTGTTAGACTTAGG+TGG + chr1.1:71512821-71512840 None:intergenic 50.0%
GGTTGTGAAGCAAAGCTTGG+GGG + chr1.1:71512840-71512859 None:intergenic 50.0%
GTATAAAGGTCGATGGACCG+TGG + chr1.1:71516556-71516575 None:intergenic 50.0%
GTGGAAGGCAACCTATATGG+AGG - chr1.1:71516802-71516821 MS.gene066245:CDS 50.0%
GTTGTGAAGCAAAGCTTGGG+GGG + chr1.1:71512839-71512858 None:intergenic 50.0%
TAACGGCCTTTCCCATGCTA+CGG + chr1.1:71515145-71515164 None:intergenic 50.0%
TCAGATACCTCTGCTCTGGT+TGG + chr1.1:71515212-71515231 None:intergenic 50.0%
TCCTGAAGTGGGTCGTAAGA+GGG + chr1.1:71512738-71512757 None:intergenic 50.0%
TGCAGAACTCCCTATTGAGG+AGG - chr1.1:71514964-71514983 MS.gene066245:intron 50.0%
TGGTGCAGAACTCCCTATTG+AGG - chr1.1:71514961-71514980 MS.gene066245:intron 50.0%
TTACCATCCTGTCCAGGCTA+TGG - chr1.1:71514922-71514941 MS.gene066245:intron 50.0%
TTGAGCCATTATCGACCTGC+AGG - chr1.1:71515833-71515852 MS.gene066245:intron 50.0%
TTTCACGGAATCCGCTGTCT+TGG + chr1.1:71514202-71514221 None:intergenic 50.0%
! ACAGAAGCCGCTTTACCAAG+TGG - chr1.1:71515536-71515555 MS.gene066245:intron 50.0%
! ATGTCTCAGGTTGCAACCAC+TGG - chr1.1:71512698-71512717 MS.gene066245:CDS 50.0%
! CAGAAGCCGCTTTACCAAGT+GGG - chr1.1:71515537-71515556 MS.gene066245:intron 50.0%
! CTGTATGTGGGCTGTTGGTT+TGG - chr1.1:71514376-71514395 MS.gene066245:CDS 50.0%
! CTTCTCTGTATGTGGGCTGT+TGG - chr1.1:71514371-71514390 MS.gene066245:CDS 50.0%
! GCAGGAAAAGGGTACAACAG+AGG - chr1.1:71516254-71516273 MS.gene066245:CDS 50.0%
! GTTGCCTAACTGGCCTGATT+TGG - chr1.1:71514801-71514820 MS.gene066245:intron 50.0%
! TTGGTGGCCATGCAGGAAAA+GGG - chr1.1:71516243-71516262 MS.gene066245:CDS 50.0%
! TTTGGTGGCCATGCAGGAAA+AGG - chr1.1:71516242-71516261 MS.gene066245:CDS 50.0%
!! ATGTGGGCTGTTGGTTTGGT+TGG - chr1.1:71514380-71514399 MS.gene066245:CDS 50.0%
!! CCTAATTTTGGTGGCCATGC+AGG - chr1.1:71516236-71516255 MS.gene066245:CDS 50.0%
!! CTGGCCTGATTTGGAGAATC+GGG - chr1.1:71514810-71514829 MS.gene066245:CDS 50.0%
!! GTTGGTTTGGTTGGGGGTTA+AGG - chr1.1:71514389-71514408 MS.gene066245:CDS 50.0%
!! TGTGGGCTGTTGGTTTGGTT+GGG - chr1.1:71514381-71514400 MS.gene066245:CDS 50.0%
ACCACTAAGCCACACTGCCT+TGG + chr1.1:71514005-71514024 None:intergenic 55.0%
AGGGTCCTGAGGTTAGGAGT+GGG - chr1.1:71513469-71513488 MS.gene066245:intron 55.0%
CAACCATAGCCTGGACAGGA+TGG + chr1.1:71514928-71514947 None:intergenic 55.0%
CTCCTCTTGCAACCATAGCC+TGG + chr1.1:71514937-71514956 None:intergenic 55.0%
CTTGCAACCATAGCCTGGAC+AGG + chr1.1:71514932-71514951 None:intergenic 55.0%
GCTGTTCGAGAAGGTTCCGA+TGG - chr1.1:71515242-71515261 MS.gene066245:intron 55.0%
GTCCAGGCTATGGTTGCAAG+AGG - chr1.1:71514932-71514951 MS.gene066245:intron 55.0%
TAGGGTCCTGAGGTTAGGAG+TGG - chr1.1:71513468-71513487 MS.gene066245:intron 55.0%
TCCAAGGCAGTGTGGCTTAG+TGG - chr1.1:71514001-71514020 MS.gene066245:CDS 55.0%
TCCCTCTTACGACCCACTTC+AGG - chr1.1:71512734-71512753 MS.gene066245:CDS 55.0%
TGAAGTGGGTCGTAAGAGGG+AGG + chr1.1:71512735-71512754 None:intergenic 55.0%
TGGTGCCTGCAGGTCGATAA+TGG + chr1.1:71515841-71515860 None:intergenic 55.0%
TTAGGTGGCATCTGCCCACT+TGG + chr1.1:71515554-71515573 None:intergenic 55.0%
!! GTGGGCTGTTGGTTTGGTTG+GGG - chr1.1:71514382-71514401 MS.gene066245:CDS 55.0%
!! TGAGGAGGTTCCGCTTTTGC+AGG - chr1.1:71514979-71514998 MS.gene066245:intron 55.0%
!! TGGGCTGTTGGTTTGGTTGG+GGG - chr1.1:71514383-71514402 MS.gene066245:CDS 55.0%
ACCTCTGCTCTGGTTGGCGT+GGG + chr1.1:71515206-71515225 None:intergenic 60.0%
ATGGAGGAGAGCTCGCGTCA+CGG - chr1.1:71514235-71514254 MS.gene066245:intron 60.0%
CAGCAGTTCCAACGCCACTC+TGG + chr1.1:71513548-71513567 None:intergenic 60.0%
GGGTCCTGAGGTTAGGAGTG+GGG - chr1.1:71513470-71513489 MS.gene066245:intron 60.0%
TACCTCTGCTCTGGTTGGCG+TGG + chr1.1:71515207-71515226 None:intergenic 60.0%
! CAGAGTGGCGTTGGAACTGC+TGG - chr1.1:71513546-71513565 MS.gene066245:intron 60.0%
CCTCTGCTCTGGTTGGCGTG+GGG + chr1.1:71515205-71515224 None:intergenic 65.0%
CCCCACGCCAACCAGAGCAG+AGG - chr1.1:71515202-71515221 MS.gene066245:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 71512698 71516875 71512698 ID=MS.gene066245
chr1.1 mRNA 71512698 71516875 71512698 ID=MS.gene066245.t1;Parent=MS.gene066245
chr1.1 exon 71516645 71516875 71516645 ID=MS.gene066245.t1.exon1;Parent=MS.gene066245.t1
chr1.1 CDS 71516645 71516875 71516645 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71516212 71516499 71516212 ID=MS.gene066245.t1.exon2;Parent=MS.gene066245.t1
chr1.1 CDS 71516212 71516499 71516212 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71515937 71516102 71515937 ID=MS.gene066245.t1.exon3;Parent=MS.gene066245.t1
chr1.1 CDS 71515937 71516102 71515937 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71515267 71515401 71515267 ID=MS.gene066245.t1.exon4;Parent=MS.gene066245.t1
chr1.1 CDS 71515267 71515401 71515267 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71515004 71515114 71515004 ID=MS.gene066245.t1.exon5;Parent=MS.gene066245.t1
chr1.1 CDS 71515004 71515114 71515004 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71514807 71514895 71514807 ID=MS.gene066245.t1.exon6;Parent=MS.gene066245.t1
chr1.1 CDS 71514807 71514895 71514807 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71514573 71514635 71514573 ID=MS.gene066245.t1.exon7;Parent=MS.gene066245.t1
chr1.1 CDS 71514573 71514635 71514573 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71514276 71514451 71514276 ID=MS.gene066245.t1.exon8;Parent=MS.gene066245.t1
chr1.1 CDS 71514276 71514451 71514276 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71513981 71514083 71513981 ID=MS.gene066245.t1.exon9;Parent=MS.gene066245.t1
chr1.1 CDS 71513981 71514083 71513981 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71513694 71513842 71513694 ID=MS.gene066245.t1.exon10;Parent=MS.gene066245.t1
chr1.1 CDS 71513694 71513842 71513694 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71513207 71513315 71513207 ID=MS.gene066245.t1.exon11;Parent=MS.gene066245.t1
chr1.1 CDS 71513207 71513315 71513207 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
chr1.1 exon 71512698 71512817 71512698 ID=MS.gene066245.t1.exon12;Parent=MS.gene066245.t1
chr1.1 CDS 71512698 71512817 71512698 ID=cds.MS.gene066245.t1;Parent=MS.gene066245.t1
Gene Sequence

>MS.gene066245

ATGTCTCAGGTTGCAACCACTGGATCCATTCAAACCTCCCTCTTACGACCCACTTCAGGATCTACACATGACAGGTCTCAAACCTTGTTAAAGCCTCCATCTTTTTCCTCCAAAATCTTCCCACCTAAGTCTAACAATCCCCCCAAGCTTTGCTTCACAACCTCACCCATCAATGCAAGAAAGTCCTCATCTGCTGAAGTTGTCCCTGTATCACCCGAAGATGATTCAAAGGTTTGTTCTTTACCCATCTCTTATTCTTATTTCGCTTCTGTTTCTTGTTTCATAAGGAAAAAAAATGATGGGTCAGTGAGAAAATTTGATTTTTAGGAAGTGTTGAGAAAATTGCTGTGACCCTTTTGGTTTTTGTGGTGTATAGATTGAGGCGGAGTTGGAGAAGTTACACGTTTTGCAACAAGTTGGTAATGTTTCTGGTGGAATGTGGTCTAAGCCAATGGTTAGAAGAAAGACTAAGATTGTTTGTACTATTGGTCCTTCTACTAATACAAAGGAAATGATTTGGAAACTTGCTGAGGCTGGAATGAATGTTGCTCGTATGAATATGTCTCATGGTGATCATGCTTCTCATAAGAAAGTTATTGATTTGGTCAAGGAGTATAATGCACAATCTAAAGATAATGTTATTGCAATTATGCTTGACACCAAGGTAAGCCTTTTTTTCCTTTTCATTAAAGTTTATTTGTTGGTATGATGATATCTTCAGGATCACGGTATCGGTTTTGTGTTAGCTGATAATTTATTTTTCTGTTTTTTAGGGTCCTGAGGTTAGGAGTGGGGATTTACCACAACCAATCTTGTTAAAAACTGGCCAGGAATTCACTTTTACTATCCAGAGTGGCGTTGGAACTGCTGGTTGTGTCAGCGTGAACTATGATGATTTTGTCAATGATGTCGAAGAAGGGGACATGCTTCTTGTTGACGGTATGGCTGCTTACTCATACAACTAAAATATTCAATTTACTAACGATCTTGTGTCGTGCTAAATGATTGATGAATCGGCAAACACAAGAGTGGTATATTCTTATATTACTTTTTTTAATCTTATTAAATATTGTCTGCTGCAAAGGGGGTAAGTCTCTGTCTCGGAAAGAAAATCAGTGTTGTCATTTGTCAATTACGGATCGCGGAAAACAGCGTTTGTTCAAATTCTGCTAAGCTGCAATGCTATAGCACTGCTACTAGTTGATAACACTCTGTACTAAATAGGTTATTGTGGGACAATATCGATTTGTTCAAAATTTACTACGCTATTGCACCACTATAACAACTATTTGACAACATTGATTCCAAGGCAGTGTGGCTTAGTGGTCTTATAGTGCTTTGCATAGTTAGAGCTTTGACATTCTTATTGTTGGAAAATAACGTCAATTTCCTATCTATCTCTGGAAGCGTGAGCACCAAGTCTTTGATTGTAGGCCATCTTATGTGAATTTCTGACTCTTGATGTATGATGTAGGTGGTATGATGTCCTTCTTGGTTAAGTCCAAGACAGCGGATTCCGTGAAATGCGAAGTTATCGATGGAGGAGAGCTCGCGTCACGGAGACATTTGAATGTTAGAGGAAAGAGTGCAACACTGCCTTCAATCACTGGTTAGACTTTGGATTATTATTCCCATTCTTGATAATTTCTTATTATTGTCTGTCACTCTTTCGTCTTCTCTGTATGTGGGCTGTTGGTTTGGTTGGGGGTTAAGGTTATGTTGGTTTCCAAGGCGCATAACATTCCTTTTAATTTGTTGCAGAAAAGGATTGGGATGACATCAAATTTGGAGTCGATAATGAAGTTGATTTCTATGCCGTTTCTTTCGTTAAGGATGCACAAGTAGTTCATGAGCTGAAGAATTATTTGAAAAGTAATTATTCAATAATCAATATACTTTTTTTTTTTTTTTCCAATTAGTACCACTGATTAGTTTGCTCGATTATTTAGAAATATGATCAATTCCACTCATCAAATGCAGGCTGTGGTGCTGATATACATGTAATTGTAAAAATTGAAAGTGCAGACTCTATACCGAACTTGCATTCAATTATTACTGCATCTGATGGGGTAATAACCTAATCCTGCATTATTTCATTAATTTGTTGCCTAACTGGCCTGATTTGGAGAATCGGGATTATTAAGCGCATACCGTAGAAACATAAATCTTTAGCATTGAATTGATTTTGTTCACTGATTTATTCTGGATGCTGACCTGTCTTCTTTTACCATCCTGTCCAGGCTATGGTTGCAAGAGGAGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCGCTTTTGCAGGTAAAATTGTTTTTAAACAAATTTGAGATTAATTAATTGTAAATATAATAATTTGGTGTTTTCTCGATAATTGGACATTAGTTTGTGCTTATCTTAACTTCCATAATGCTTGTCAATGCAGGAAGAGATAATAAGGATATGCCGTAGCATGGGAAAGGCCGTTATTGTAGCCACAAATATGCTGGAAAGTATGATTGTTCACCCCACGCCAACCAGAGCAGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCCGATGGAATAATGCTTTCTGGAGAAACTGCACATGGAAAGTAAGTAAATAACTCCACATCTCAATGTGCATAGTTACCTTGACATTCCGATATTTCTTCAATTTCAGTTCTTAGAAAGGAATATAAATATGGTAATCGAATTATTGTTGCAATAGCATCTCACTGATTTAGAAATCGAATCTAAAGCAAGAGACAGAAAGCGACAATAATATGGTATTTATTATATTGCAGATTTCCAATTAAAGCTGCGAAAGTAATGCACACCGTAGCATTACGGACAGAAGCCGCTTTACCAAGTGGGCAGATGCCACCTAATATTGGCCAAGTATTCAAGGTCTAAACTTCAAGTTCAATGTGTTTTATTGCTATTTGCTATGCTAACTTTTTTAAAACTACCCTCATTTTAATGTCGGCAATGAATAAAATATTCCGGTTGACACTGAAATGTGATTTATTCTTTTTGGTTGTGCAGAACCACATGAGCGAGATGTTTGCATACCATGCAACCATGATGTCTAATACCCTTGGAACTTCAACTGTTGTCTTCACTAGATCGGGTTTCATGGCTATTCTATTGAGCCATTATCGACCTGCAGGCACCATATTTGCTTTTACTGATCAGTGAGTTATTTCCCCTACCTTTCTCTTGTTGCTTAAACCTCTTAAAATAGAAGATGACTAGATAAACATGAAACTAATTGAATCAGTAGCATTGTATGTATTCCTAAGTATGTTTGAGAGATTATTTTGAAATGTATTGGGTTAAATTGTTTGGTTATTTTGCCTCAATAATTAGTCTTACCTTTTTTTTTTGGGTTGGATATCTGTGCTTGGTTTACAAATAAAACTGACTGATTAAATGACCTTATTAACCGATCAATCCGATTTATTTTGTTGAATTGTGTATTTCAACTGAAAACTATTTTGTGTTTATCTGCACTTATTAAAATTTATAACTATGACGACTTTGTTGTTGACCTAATTTTGGTGGCCATGCAGGAAAAGGGTACAACAGAGGTTGGCTTTGTATCAAGGTGTCTGTCCTATTTACATGGAATTCTCTGATGATGCTGAAGAGACATTCACAAAAGCCTTGGATTTGTTGCAGGTAATTTTCGGAAGATATCTTTAATATGGGTTGAGATTTACCTCCATAGTACTTCTAAGAACTTCTAATTTAACAAATAACAGTTATGGTATTGAATTTTAACTCATTTTTCCTCTCATATTATTATTTGGCTTTACATTCGAACATTTAACCATGTATAGGTTCATTCATGCATGCGGTAATTAACCACGGTCCATCGACCTTTATACATTTATGAACTTCTAGTAGTTTAAAGTATAAACTAATACTTCGTGTTGCAATTACCAATGAAAATGTCAACTGAGTTGTATTTAGAAATTAGAACTGAACTCTAATTGGACTTGCTTAAACAAGGAGTTCCATTTTAATTTTAATTTGTTCATGAGCTTACACATTGTTTCCATATGCAGAAGAATGGAATGGTTAAAGAAGGAGAAGAAGTAGCCCTTGTACAAAGTGGAAGGCAACCTATATGGAGGTTCCATTCCACTCACAATATTCAGGTCCGAACAGTAGCCGCCACAAATTAA
Protein sequence

>MS.gene066245.t1

MSQVATTGSIQTSLLRPTSGSTHDRSQTLLKPPSFSSKIFPPKSNNPPKLCFTTSPINARKSSSAEVVPVSPEDDSKIEAELEKLHVLQQVGNVSGGMWSKPMVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARMNMSHGDHASHKKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPILLKTGQEFTFTIQSGVGTAGCVSVNYDDFVNDVEEGDMLLVDGGMMSFLVKSKTADSVKCEVIDGGELASRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPIKAAKVMHTVALRTEAALPSGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPAGTIFAFTDQKRVQQRLALYQGVCPIYMEFSDDAEETFTKALDLLQKNGMVKEGEEVALVQSGRQPIWRFHSTHNIQVRTVAATN