Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067555.t1 | XP_003607891.1 | 96.7 | 152 | 3 | 1 | 1 | 152 | 1 | 150 | 7.90E-79 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067555.t1 | O14155 | 51.3 | 115 | 53 | 2 | 38 | 152 | 5 | 116 | 9.3e-28 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067555.t1 | Q2MGQ1 | 96.7 | 152 | 3 | 1 | 1 | 152 | 1 | 150 | 5.7e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene067555 | 0.811614 | 6.41E-51 | -1.69E-46 |
| MS.gene049180 | MS.gene067555 | -0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene067555 | 0.851067 | 1.13E-60 | -1.69E-46 |
| MS.gene050496 | MS.gene067555 | 0.825188 | 5.37E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene067555 | 0.819403 | 1.18E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene067555 | 0.813175 | 2.92E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene067555 | 0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene067555 | 0.801668 | 8.08E-49 | -1.69E-46 |
| MS.gene054343 | MS.gene067555 | 0.833031 | 6.73E-56 | -1.69E-46 |
| MS.gene054344 | MS.gene067555 | 0.815573 | 8.63E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene067555 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene055251 | MS.gene067555 | -0.822919 | 1.83E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene067555 | 0.802399 | 5.72E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene067555 | 0.824241 | 8.98E-54 | -1.69E-46 |
| MS.gene056266 | MS.gene067555 | 0.889019 | 3.52E-73 | -1.69E-46 |
| MS.gene056692 | MS.gene067555 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene057986 | MS.gene067555 | 0.806358 | 8.55E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene067555 | -0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene067555 | 0.802007 | 6.88E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene067555 | 0.836829 | 7.44E-57 | -1.69E-46 |
| MS.gene059837 | MS.gene067555 | 0.887328 | 1.57E-72 | -1.69E-46 |
| MS.gene06000 | MS.gene067555 | 0.816168 | 6.36E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene067555 | 0.815986 | 6.98E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene067555 | 0.828199 | 1.03E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene067555 | -0.815947 | 7.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067555.t1 | MTR_4g084120 | 96.711 | 152 | 3 | 1 | 1 | 152 | 1 | 150 | 5.68e-107 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067555.t1 | AT1G21065 | 79.688 | 128 | 26 | 0 | 25 | 152 | 67 | 194 | 9.64e-75 | 223 |
Find 37 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGAACAGGATCTTTC+TGG | 0.116045 | 4.1:+24004013 | MS.gene067555:CDS |
| TGCTGCGCTTTCACGCTTAA+TGG | 0.223647 | 4.1:-24003784 | None:intergenic |
| TTAAGCTTTCCATTTGTAAT+TGG | 0.251097 | 4.1:-24005822 | None:intergenic |
| GATTTACCTATAGACGTTCT+TGG | 0.290255 | 4.1:+24005882 | MS.gene067555:CDS |
| CTGAATCCACCGCTCCCAAA+TGG | 0.374424 | 4.1:+24003836 | MS.gene067555:CDS |
| CATATTAAGTCATCAATGTT+TGG | 0.383226 | 4.1:+24005697 | MS.gene067555:CDS |
| AATTCGATTGAGGAATGTTT+CGG | 0.407385 | 4.1:-24004224 | None:intergenic |
| TTCAGGATACCAATTACAAA+TGG | 0.444301 | 4.1:+24005813 | MS.gene067555:intron |
| GCTTGACCAAGAACGTCTAT+AGG | 0.458750 | 4.1:-24005888 | None:intergenic |
| AGATGACAGCCGCGTTTGTA+AGG | 0.461854 | 4.1:-24003883 | None:intergenic |
| TGCAGGGGCCATCTGCACCT+TGG | 0.473611 | 4.1:+24004342 | MS.gene067555:intron |
| CCCTCTAGAGTGTGCTTCCA+AGG | 0.475370 | 4.1:-24004359 | None:intergenic |
| TGAATCCACCGCTCCCAAAT+GGG | 0.475393 | 4.1:+24003837 | MS.gene067555:CDS |
| GATAGCGAAAGAAATTGAAC+AGG | 0.480863 | 4.1:+24004003 | MS.gene067555:intron |
| CTGTCATCTTGTTACTCCCA+AGG | 0.510680 | 4.1:+24003897 | MS.gene067555:CDS |
| GCTTAACATGGGAACCTGGC+AGG | 0.523728 | 4.1:+24005839 | MS.gene067555:CDS |
| CTGGGCCCATTTGGGAGCGG+TGG | 0.526538 | 4.1:-24003842 | None:intergenic |
| GAAAGCTTAACATGGGAACC+TGG | 0.533663 | 4.1:+24005835 | MS.gene067555:CDS |
| ATATATACTCACAGAAGAGA+TGG | 0.543708 | 4.1:-24004054 | None:intergenic |
| AGTAAACGATGTTACCTGCC+AGG | 0.545004 | 4.1:-24005853 | None:intergenic |
| TTTCTGGGCCCATTTGGGAG+CGG | 0.545582 | 4.1:-24003845 | None:intergenic |
| ATTGATGACTTAATATGAGC+CGG | 0.551506 | 4.1:-24005691 | None:intergenic |
| GTGTGCTTCCAAGGTGCAGA+TGG | 0.554212 | 4.1:-24004350 | None:intergenic |
| CTTGAAGACAAAAGAATCCA+TGG | 0.555822 | 4.1:+24003813 | MS.gene067555:CDS |
| CCTCGGGAACAATTCGATTG+AGG | 0.564302 | 4.1:-24004234 | None:intergenic |
| CCTTGGAAGCACACTCTAGA+GGG | 0.564381 | 4.1:+24004359 | MS.gene067555:CDS |
| TGTAGGTCATGATGACATGC+CGG | 0.579488 | 4.1:+24005672 | MS.gene067555:intron |
| TATATACTCACAGAAGAGAT+GGG | 0.591373 | 4.1:-24004053 | None:intergenic |
| TTTGTAAGGTGGTAGAGCGA+TGG | 0.592048 | 4.1:-24003869 | None:intergenic |
| GGGAGCGGTGGATTCAGCCA+TGG | 0.593135 | 4.1:-24003830 | None:intergenic |
| TACAAATGGAAAGCTTAACA+TGG | 0.595390 | 4.1:+24005827 | MS.gene067555:CDS |
| TGACAGCCGCGTTTGTAAGG+TGG | 0.611847 | 4.1:-24003880 | None:intergenic |
| CCTCAATCGAATTGTTCCCG+AGG | 0.630614 | 4.1:+24004234 | MS.gene067555:CDS |
| ACCTTGGAAGCACACTCTAG+AGG | 0.633350 | 4.1:+24004358 | MS.gene067555:CDS |
| GATCTTTCTGGATTCAAGTG+CGG | 0.636539 | 4.1:+24004025 | MS.gene067555:CDS |
| ACAAATGGAAAGCTTAACAT+GGG | 0.648618 | 4.1:+24005828 | MS.gene067555:CDS |
| GCTCTACCACCTTACAAACG+CGG | 0.803139 | 4.1:+24003874 | MS.gene067555:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATGAAAAATGAAAT+TGG | - | chr4.1:24003954-24003973 | None:intergenic | 15.0% |
| !! | AGTAAATGAAAAATGAAATT+GGG | - | chr4.1:24003953-24003972 | None:intergenic | 15.0% |
| !! | ATGAATGAATAAACAAATAT+TGG | - | chr4.1:24004272-24004291 | None:intergenic | 15.0% |
| !! | TAAAACTTTAAATATGATCA+AGG | + | chr4.1:24004423-24004442 | MS.gene067555:intron | 15.0% |
| !! | TATAACAAAAGAAAAAACAA+AGG | - | chr4.1:24004592-24004611 | None:intergenic | 15.0% |
| !! | AAATATTTAGATTCTGTTCT+TGG | + | chr4.1:24005351-24005370 | MS.gene067555:intron | 20.0% |
| !! | AAGCAAAAAAATGCTTAAAA+TGG | - | chr4.1:24005453-24005472 | None:intergenic | 20.0% |
| !! | AATAAACAAATATTGGTGAA+TGG | - | chr4.1:24004265-24004284 | None:intergenic | 20.0% |
| !! | AATATTTAGATTCTGTTCTT+GGG | + | chr4.1:24005352-24005371 | MS.gene067555:intron | 20.0% |
| !! | ATCTGAAGAAAAAAATAGTT+GGG | - | chr4.1:24003986-24004005 | None:intergenic | 20.0% |
| !! | GTAAATGAAAAATGAAATTG+GGG | - | chr4.1:24003952-24003971 | None:intergenic | 20.0% |
| !! | TAAATGAAAAATGAAATTGG+GGG | - | chr4.1:24003951-24003970 | None:intergenic | 20.0% |
| !! | TATCTGAAGAAAAAAATAGT+TGG | - | chr4.1:24003987-24004006 | None:intergenic | 20.0% |
| !!! | CTTTTCTTATACTTCATTAT+AGG | - | chr4.1:24005098-24005117 | None:intergenic | 20.0% |
| ! | AAAAGAAAAAACAAAGGCAA+AGG | - | chr4.1:24004586-24004605 | None:intergenic | 25.0% |
| ! | AAAATTGTGAGATTGAGATT+GGG | - | chr4.1:24003928-24003947 | None:intergenic | 25.0% |
| ! | ACCAATAAATTAAACTGAGA+TGG | - | chr4.1:24005323-24005342 | None:intergenic | 25.0% |
| ! | ACTTCATTATAGGTTATAGT+AGG | - | chr4.1:24005088-24005107 | None:intergenic | 25.0% |
| ! | ATAAACACGAATCATATAAG+TGG | - | chr4.1:24004639-24004658 | None:intergenic | 25.0% |
| ! | ATAGGTTATAGTAGGTATAA+TGG | - | chr4.1:24005080-24005099 | None:intergenic | 25.0% |
| ! | ATATTTAGATTCTGTTCTTG+GGG | + | chr4.1:24005353-24005372 | MS.gene067555:intron | 25.0% |
| ! | CATATTAAGTCATCAATGTT+TGG | + | chr4.1:24005697-24005716 | MS.gene067555:CDS | 25.0% |
| ! | CTTAATATCCAAACACAAAT+TGG | - | chr4.1:24005426-24005445 | None:intergenic | 25.0% |
| ! | GAAAACACGTAAATTATACT+TGG | - | chr4.1:24005592-24005611 | None:intergenic | 25.0% |
| ! | TAGGTTATAGTAGGTATAAT+GGG | - | chr4.1:24005079-24005098 | None:intergenic | 25.0% |
| ! | TCACTAGATAAACTCATATA+AGG | - | chr4.1:24004470-24004489 | None:intergenic | 25.0% |
| ! | TCTGAAGAAAAAAATAGTTG+GGG | - | chr4.1:24003985-24004004 | None:intergenic | 25.0% |
| ! | TCTTGTATATAACATTGCTT+CGG | + | chr4.1:24004925-24004944 | MS.gene067555:intron | 25.0% |
| ! | TTAAGCTTTCCATTTGTAAT+TGG | - | chr4.1:24005825-24005844 | None:intergenic | 25.0% |
| ! | TTTAAATATGATCAAGGAGT+AGG | + | chr4.1:24004429-24004448 | MS.gene067555:intron | 25.0% |
| !! | ATTTGATAGTCTAAGTAAAC+TGG | - | chr4.1:24005526-24005545 | None:intergenic | 25.0% |
| !! | TCCATCTCAGTTTAATTTAT+TGG | + | chr4.1:24005319-24005338 | MS.gene067555:intron | 25.0% |
| AAGAGAAAATTGCATTACTG+AGG | - | chr4.1:24004711-24004730 | None:intergenic | 30.0% | |
| AATGGTTCTTCAAATGATAG+AGG | - | chr4.1:24004789-24004808 | None:intergenic | 30.0% | |
| AATTCGATTGAGGAATGTTT+CGG | - | chr4.1:24004227-24004246 | None:intergenic | 30.0% | |
| AATTTGTGCTGAAATGAAGT+TGG | + | chr4.1:24004128-24004147 | MS.gene067555:intron | 30.0% | |
| ACAAATGGAAAGCTTAACAT+GGG | + | chr4.1:24005828-24005847 | MS.gene067555:CDS | 30.0% | |
| ACTATCAAATTTGACAACCT+TGG | + | chr4.1:24005536-24005555 | MS.gene067555:intron | 30.0% | |
| ATATATACTCACAGAAGAGA+TGG | - | chr4.1:24004057-24004076 | None:intergenic | 30.0% | |
| CTCTAGTTAAATTGATCCTT+GGG | + | chr4.1:24005226-24005245 | MS.gene067555:intron | 30.0% | |
| GAAAATTGTGAGATTGAGAT+TGG | - | chr4.1:24003929-24003948 | None:intergenic | 30.0% | |
| GAAGCAATGTTATATACAAG+AGG | - | chr4.1:24004926-24004945 | None:intergenic | 30.0% | |
| TACAAATGGAAAGCTTAACA+TGG | + | chr4.1:24005827-24005846 | MS.gene067555:CDS | 30.0% | |
| TATATACTCACAGAAGAGAT+GGG | - | chr4.1:24004056-24004075 | None:intergenic | 30.0% | |
| TGAAAATACAAGACATCAGT+AGG | - | chr4.1:24005797-24005816 | None:intergenic | 30.0% | |
| TGTTTAGTTGTAGCATGTTA+CGG | - | chr4.1:24004967-24004986 | None:intergenic | 30.0% | |
| TTACAATCAGAGTATGTGAA+TGG | - | chr4.1:24004807-24004826 | None:intergenic | 30.0% | |
| TTCAGGATACCAATTACAAA+TGG | + | chr4.1:24005813-24005832 | MS.gene067555:intron | 30.0% | |
| ! | ATTCTTTTGTCTTCAAGGTT+GGG | - | chr4.1:24003810-24003829 | None:intergenic | 30.0% |
| ! | ATTGATGACTTAATATGAGC+CGG | - | chr4.1:24005694-24005713 | None:intergenic | 30.0% |
| ! | CTTATTATGTAATTTGCACG+TGG | + | chr4.1:24005397-24005416 | MS.gene067555:intron | 30.0% |
| ! | GTAGTTTTTGTAAGCTATCA+TGG | - | chr4.1:24004545-24004564 | None:intergenic | 30.0% |
| ! | TACTGATGTCTTGTATTTTC+AGG | + | chr4.1:24005796-24005815 | MS.gene067555:intron | 30.0% |
| !!! | CTTTGGTTTTGCAATTTTGT+AGG | + | chr4.1:24005655-24005674 | MS.gene067555:intron | 30.0% |
| AACCAAAGACCATTATTGGT+TGG | - | chr4.1:24005643-24005662 | None:intergenic | 35.0% | |
| AACCATGATGTGTGTTGAAA+TGG | + | chr4.1:24005155-24005174 | MS.gene067555:intron | 35.0% | |
| AATTTAACTAGAGCAGAGGA+TGG | - | chr4.1:24005219-24005238 | None:intergenic | 35.0% | |
| ATCCAACCAATAATGGTCTT+TGG | + | chr4.1:24005638-24005657 | MS.gene067555:intron | 35.0% | |
| ATGGATTCACATTGAGATGT+TGG | - | chr4.1:24005018-24005037 | None:intergenic | 35.0% | |
| ATTGGTGAATGGTAAAACCT+CGG | - | chr4.1:24004254-24004273 | None:intergenic | 35.0% | |
| ATTTCAACACACATCATGGT+TGG | - | chr4.1:24005156-24005175 | None:intergenic | 35.0% | |
| CAACTCAATTACACGCTTAT+AGG | - | chr4.1:24004662-24004681 | None:intergenic | 35.0% | |
| CAATGTGAATCCATTTGCAA+AGG | + | chr4.1:24005024-24005043 | MS.gene067555:intron | 35.0% | |
| CTTGAAGACAAAAGAATCCA+TGG | + | chr4.1:24003813-24003832 | MS.gene067555:CDS | 35.0% | |
| CTTTGCAAACTTGCAACAAT+GGG | - | chr4.1:24005130-24005149 | None:intergenic | 35.0% | |
| GAAATTGAACAGGATCTTTC+TGG | + | chr4.1:24004013-24004032 | MS.gene067555:CDS | 35.0% | |
| GATAGCGAAAGAAATTGAAC+AGG | + | chr4.1:24004003-24004022 | MS.gene067555:intron | 35.0% | |
| GATCAATTTAACTAGAGCAG+AGG | - | chr4.1:24005223-24005242 | None:intergenic | 35.0% | |
| GATTTACCTATAGACGTTCT+TGG | + | chr4.1:24005882-24005901 | MS.gene067555:CDS | 35.0% | |
| GCAAAACCAAAGACCATTAT+TGG | - | chr4.1:24005647-24005666 | None:intergenic | 35.0% | |
| GCATCGCAGTTCAAAATTAA+CGG | - | chr4.1:24005266-24005285 | None:intergenic | 35.0% | |
| GCATTGTTACGTAATAACCA+AGG | - | chr4.1:24005556-24005575 | None:intergenic | 35.0% | |
| GCTCTAGTTAAATTGATCCT+TGG | + | chr4.1:24005225-24005244 | MS.gene067555:intron | 35.0% | |
| GGTGAAACATACAACAGATT+GGG | - | chr4.1:24005616-24005635 | None:intergenic | 35.0% | |
| GTGAAACATACAACAGATTG+GGG | - | chr4.1:24005615-24005634 | None:intergenic | 35.0% | |
| GTTTAGTTGTAGCATGTTAC+GGG | - | chr4.1:24004966-24004985 | None:intergenic | 35.0% | |
| TCTTTGCAAACTTGCAACAA+TGG | - | chr4.1:24005131-24005150 | None:intergenic | 35.0% | |
| TGAAACATACAACAGATTGG+GGG | - | chr4.1:24005614-24005633 | None:intergenic | 35.0% | |
| TTACGTAACAATGCTGTTGT+TGG | + | chr4.1:24005562-24005581 | MS.gene067555:intron | 35.0% | |
| TTTAGTTGTAGCATGTTACG+GGG | - | chr4.1:24004965-24004984 | None:intergenic | 35.0% | |
| TTTCAACACACATCATGGTT+GGG | - | chr4.1:24005155-24005174 | None:intergenic | 35.0% | |
| ! | AAGACCATTATTGGTTGGAT+AGG | - | chr4.1:24005638-24005657 | None:intergenic | 35.0% |
| ! | AGACCATTATTGGTTGGATA+GGG | - | chr4.1:24005637-24005656 | None:intergenic | 35.0% |
| ! | ATTGAGTTGCTTATCCAAAG+AGG | + | chr4.1:24004673-24004692 | MS.gene067555:intron | 35.0% |
| ! | CATGGATTCTTTTGTCTTCA+AGG | - | chr4.1:24003815-24003834 | None:intergenic | 35.0% |
| ! | GATTCTTTTGTCTTCAAGGT+TGG | - | chr4.1:24003811-24003830 | None:intergenic | 35.0% |
| ! | TAATTTTGAACTGCGATGCT+AGG | + | chr4.1:24005267-24005286 | MS.gene067555:intron | 35.0% |
| ! | TTGAGTTGCTTATCCAAAGA+GGG | + | chr4.1:24004674-24004693 | MS.gene067555:intron | 35.0% |
| AGATTACACTAGACCAAACC+AGG | - | chr4.1:24005294-24005313 | None:intergenic | 40.0% | |
| AGTTGAATTGAGCTCCAATG+AGG | + | chr4.1:24005180-24005199 | MS.gene067555:intron | 40.0% | |
| ATTGTGAGATTGAGATTGGG+AGG | - | chr4.1:24003925-24003944 | None:intergenic | 40.0% | |
| CAAATGATAGAGGCTTTCTG+TGG | - | chr4.1:24004779-24004798 | None:intergenic | 40.0% | |
| CGTGGTATCCAATTTGTGTT+TGG | + | chr4.1:24005415-24005434 | MS.gene067555:intron | 40.0% | |
| GAGTTTACAAATCGAGCCTA+CGG | + | chr4.1:24005492-24005511 | MS.gene067555:intron | 40.0% | |
| GATCTTTCTGGATTCAAGTG+CGG | + | chr4.1:24004025-24004044 | MS.gene067555:CDS | 40.0% | |
| GGGTGAAACATACAACAGAT+TGG | - | chr4.1:24005617-24005636 | None:intergenic | 40.0% | |
| TAAACTGGTGAAATCTCCGT+AGG | - | chr4.1:24005511-24005530 | None:intergenic | 40.0% | |
| TAATCAGTTAGTTAGTGCGC+TGG | + | chr4.1:24004859-24004878 | MS.gene067555:intron | 40.0% | |
| TCACCCTATCCAACCAATAA+TGG | + | chr4.1:24005631-24005650 | MS.gene067555:intron | 40.0% | |
| TGAGATGTTGGATGCATTTG+TGG | - | chr4.1:24005006-24005025 | None:intergenic | 40.0% | |
| TGAGCTCCAATGAGGAAAAT+CGG | + | chr4.1:24005188-24005207 | MS.gene067555:intron | 40.0% | |
| TGTGAATCCATTTGCAAAGG+AGG | + | chr4.1:24005027-24005046 | MS.gene067555:intron | 40.0% | |
| TTGGTGAATGGTAAAACCTC+GGG | - | chr4.1:24004253-24004272 | None:intergenic | 40.0% | |
| ! | TGCCATTTCAACACACATCA+TGG | - | chr4.1:24005160-24005179 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTTGTGTCCTGCA+GGG | + | chr4.1:24004326-24004345 | MS.gene067555:intron | 40.0% |
| !!! | TTGTGTTTTTTGTGTCCTGC+AGG | + | chr4.1:24004325-24004344 | MS.gene067555:intron | 40.0% |
| AGCTCATTCATGAGCTAAGG+AGG | - | chr4.1:24004902-24004921 | None:intergenic | 45.0% | |
| AGTAAACGATGTTACCTGCC+AGG | - | chr4.1:24005856-24005875 | None:intergenic | 45.0% | |
| ATTGAGATTGGGAGGAACCT+TGG | - | chr4.1:24003917-24003936 | None:intergenic | 45.0% | |
| CTGTCATCTTGTTACTCCCA+AGG | + | chr4.1:24003897-24003916 | MS.gene067555:CDS | 45.0% | |
| GAAAGCTTAACATGGGAACC+TGG | + | chr4.1:24005835-24005854 | MS.gene067555:CDS | 45.0% | |
| GCTTGACCAAGAACGTCTAT+AGG | - | chr4.1:24005891-24005910 | None:intergenic | 45.0% | |
| GGACATGTTTACGAATCCCA+AGG | - | chr4.1:24005245-24005264 | None:intergenic | 45.0% | |
| GGTAGCTCATTCATGAGCTA+AGG | - | chr4.1:24004905-24004924 | None:intergenic | 45.0% | |
| GTGTTCACCTCCTTTGCAAA+TGG | - | chr4.1:24005037-24005056 | None:intergenic | 45.0% | |
| TAACTAGAGCAGAGGATGGT+GGG | - | chr4.1:24005215-24005234 | None:intergenic | 45.0% | |
| TCAAGGAGTAGGAGCAAGTT+TGG | + | chr4.1:24004440-24004459 | MS.gene067555:intron | 45.0% | |
| TGCATTACTGAGGCTAGATC+CGG | - | chr4.1:24004701-24004720 | None:intergenic | 45.0% | |
| TGTAGGTCATGATGACATGC+CGG | + | chr4.1:24005672-24005691 | MS.gene067555:intron | 45.0% | |
| TTAACTAGAGCAGAGGATGG+TGG | - | chr4.1:24005216-24005235 | None:intergenic | 45.0% | |
| TTGAGATTGGGAGGAACCTT+GGG | - | chr4.1:24003916-24003935 | None:intergenic | 45.0% | |
| TTGCTTATCCAAAGAGGGTC+CGG | + | chr4.1:24004679-24004698 | MS.gene067555:intron | 45.0% | |
| TTTGTAAGGTGGTAGAGCGA+TGG | - | chr4.1:24003872-24003891 | None:intergenic | 45.0% | |
| ! | ATGGTTTTCTGGGCCCATTT+GGG | - | chr4.1:24003853-24003872 | None:intergenic | 45.0% |
| ! | TGGTAGAGCGATGGTTTTCT+GGG | - | chr4.1:24003863-24003882 | None:intergenic | 45.0% |
| !!! | GTGTTTTTTGTGTCCTGCAG+GGG | + | chr4.1:24004327-24004346 | MS.gene067555:intron | 45.0% |
| AGATGACAGCCGCGTTTGTA+AGG | - | chr4.1:24003886-24003905 | None:intergenic | 50.0% | |
| CCTCAATCGAATTGTTCCCG+AGG | + | chr4.1:24004234-24004253 | MS.gene067555:CDS | 50.0% | |
| CCTCGGGAACAATTCGATTG+AGG | - | chr4.1:24004237-24004256 | None:intergenic | 50.0% | |
| GCTCTACCACCTTACAAACG+CGG | + | chr4.1:24003874-24003893 | MS.gene067555:CDS | 50.0% | |
| TGAATCCACCGCTCCCAAAT+GGG | + | chr4.1:24003837-24003856 | MS.gene067555:CDS | 50.0% | |
| TGCTGCGCTTTCACGCTTAA+TGG | - | chr4.1:24003787-24003806 | None:intergenic | 50.0% | |
| ! | ACCTTGGAAGCACACTCTAG+AGG | + | chr4.1:24004358-24004377 | MS.gene067555:CDS | 50.0% |
| ! | CCTTGGAAGCACACTCTAGA+GGG | + | chr4.1:24004359-24004378 | MS.gene067555:CDS | 50.0% |
| ! | GATGGTTTTCTGGGCCCATT+TGG | - | chr4.1:24003854-24003873 | None:intergenic | 50.0% |
| ! | GTGGTAGAGCGATGGTTTTC+TGG | - | chr4.1:24003864-24003883 | None:intergenic | 50.0% |
| !! | GTGGGACCGATTTTCCTCAT+TGG | - | chr4.1:24005197-24005216 | None:intergenic | 50.0% |
| CTGAATCCACCGCTCCCAAA+TGG | + | chr4.1:24003836-24003855 | MS.gene067555:CDS | 55.0% | |
| GCTTAACATGGGAACCTGGC+AGG | + | chr4.1:24005839-24005858 | MS.gene067555:CDS | 55.0% | |
| GTGTGCTTCCAAGGTGCAGA+TGG | - | chr4.1:24004353-24004372 | None:intergenic | 55.0% | |
| TGAACTGCGATGCTAGGTCC+TGG | + | chr4.1:24005273-24005292 | MS.gene067555:intron | 55.0% | |
| TGACAGCCGCGTTTGTAAGG+TGG | - | chr4.1:24003883-24003902 | None:intergenic | 55.0% | |
| TGCGATGCTAGGTCCTGGTT+TGG | + | chr4.1:24005278-24005297 | MS.gene067555:intron | 55.0% | |
| TTTCTGGGCCCATTTGGGAG+CGG | - | chr4.1:24003848-24003867 | None:intergenic | 55.0% | |
| !! | CCCTCTAGAGTGTGCTTCCA+AGG | - | chr4.1:24004362-24004381 | None:intergenic | 55.0% |
| GGCTAGATCCGGACCCTCTT+TGG | - | chr4.1:24004690-24004709 | None:intergenic | 60.0% | |
| AAGGTGCAGATGGCCCCTGC+AGG | - | chr4.1:24004343-24004362 | None:intergenic | 65.0% | |
| TGCAGGGGCCATCTGCACCT+TGG | + | chr4.1:24004342-24004361 | MS.gene067555:intron | 65.0% | |
| ! | GGGAGCGGTGGATTCAGCCA+TGG | - | chr4.1:24003833-24003852 | None:intergenic | 65.0% |
| CTGGGCCCATTTGGGAGCGG+TGG | - | chr4.1:24003845-24003864 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24003751 | 24005917 | 24003751 | ID=MS.gene067555 |
| chr4.1 | mRNA | 24003751 | 24005917 | 24003751 | ID=MS.gene067555.t1;Parent=MS.gene067555 |
| chr4.1 | exon | 24003751 | 24003918 | 24003751 | ID=MS.gene067555.t1.exon1;Parent=MS.gene067555.t1 |
| chr4.1 | CDS | 24003751 | 24003918 | 24003751 | ID=cds.MS.gene067555.t1;Parent=MS.gene067555.t1 |
| chr4.1 | exon | 24004004 | 24004064 | 24004004 | ID=MS.gene067555.t1.exon2;Parent=MS.gene067555.t1 |
| chr4.1 | CDS | 24004004 | 24004064 | 24004004 | ID=cds.MS.gene067555.t1;Parent=MS.gene067555.t1 |
| chr4.1 | exon | 24004161 | 24004255 | 24004161 | ID=MS.gene067555.t1.exon3;Parent=MS.gene067555.t1 |
| chr4.1 | CDS | 24004161 | 24004255 | 24004161 | ID=cds.MS.gene067555.t1;Parent=MS.gene067555.t1 |
| chr4.1 | exon | 24004347 | 24004380 | 24004347 | ID=MS.gene067555.t1.exon4;Parent=MS.gene067555.t1 |
| chr4.1 | CDS | 24004347 | 24004380 | 24004347 | ID=cds.MS.gene067555.t1;Parent=MS.gene067555.t1 |
| chr4.1 | exon | 24005677 | 24005731 | 24005677 | ID=MS.gene067555.t1.exon5;Parent=MS.gene067555.t1 |
| chr4.1 | CDS | 24005677 | 24005731 | 24005677 | ID=cds.MS.gene067555.t1;Parent=MS.gene067555.t1 |
| chr4.1 | exon | 24005818 | 24005917 | 24005818 | ID=MS.gene067555.t1.exon6;Parent=MS.gene067555.t1 |
| chr4.1 | CDS | 24005818 | 24005917 | 24005818 | ID=cds.MS.gene067555.t1;Parent=MS.gene067555.t1 |
| Gene Sequence |
| Protein sequence |
