Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069341.t1 | XP_013447807.1 | 97.8 | 322 | 6 | 1 | 1 | 322 | 26 | 346 | 1.50E-179 | 638.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069341.t1 | Q9SLN8 | 67.9 | 305 | 97 | 1 | 18 | 322 | 40 | 343 | 3.3e-119 | 429.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069341.t1 | I3SE71 | 97.8 | 322 | 6 | 1 | 1 | 322 | 26 | 346 | 1.1e-179 | 638.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069341 | MS.gene022721 | PPI |
| MS.gene020239 | MS.gene069341 | PPI |
| MS.gene39314 | MS.gene069341 | PPI |
| MS.gene39315 | MS.gene069341 | PPI |
| MS.gene069341 | MS.gene022735 | PPI |
| MS.gene069341 | MS.gene022736 | PPI |
| MS.gene022721 | MS.gene069341 | PPI |
| MS.gene069341 | MS.gene020227 | PPI |
| MS.gene020077 | MS.gene069341 | PPI |
| MS.gene020033 | MS.gene069341 | PPI |
| MS.gene020225 | MS.gene069341 | PPI |
| MS.gene020076 | MS.gene069341 | PPI |
| MS.gene39327 | MS.gene069341 | PPI |
| MS.gene022737 | MS.gene069341 | PPI |
| MS.gene069341 | MS.gene45375 | PPI |
| MS.gene069341 | MS.gene39314 | PPI |
| MS.gene39312 | MS.gene069341 | PPI |
| MS.gene022722 | MS.gene069341 | PPI |
| MS.gene020226 | MS.gene069341 | PPI |
| MS.gene020228 | MS.gene069341 | PPI |
| MS.gene069341 | MS.gene022738 | PPI |
| MS.gene069341 | MS.gene39313 | PPI |
| MS.gene39326 | MS.gene069341 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069341.t1 | MTR_7g406860 | 97.826 | 322 | 6 | 1 | 1 | 322 | 26 | 346 | 0.0 | 643 |
| MS.gene069341.t1 | MTR_8g010030 | 63.407 | 317 | 114 | 2 | 7 | 322 | 29 | 344 | 3.38e-141 | 403 |
| MS.gene069341.t1 | MTR_8g009820 | 63.608 | 316 | 114 | 1 | 7 | 322 | 88 | 402 | 2.11e-140 | 403 |
| MS.gene069341.t1 | MTR_8g009830 | 62.342 | 316 | 117 | 2 | 7 | 322 | 29 | 342 | 1.46e-139 | 399 |
| MS.gene069341.t1 | MTR_8g009980 | 63.192 | 307 | 110 | 2 | 18 | 322 | 39 | 344 | 2.26e-138 | 395 |
| MS.gene069341.t1 | MTR_8g009840 | 61.290 | 310 | 118 | 2 | 7 | 316 | 29 | 336 | 3.35e-133 | 389 |
| MS.gene069341.t1 | MTR_4g082970 | 60.897 | 312 | 117 | 3 | 15 | 322 | 40 | 350 | 8.22e-131 | 377 |
| MS.gene069341.t1 | MTR_8g010020 | 66.791 | 268 | 88 | 1 | 55 | 322 | 46 | 312 | 1.39e-127 | 367 |
| MS.gene069341.t1 | MTR_8g010000 | 54.777 | 314 | 112 | 4 | 13 | 322 | 32 | 319 | 3.57e-114 | 333 |
| MS.gene069341.t1 | MTR_0011s0280 | 48.710 | 310 | 153 | 2 | 18 | 322 | 38 | 346 | 8.31e-110 | 323 |
| MS.gene069341.t1 | MTR_2g088190 | 41.772 | 316 | 180 | 3 | 8 | 319 | 32 | 347 | 4.37e-84 | 258 |
| MS.gene069341.t1 | MTR_2g088220 | 41.139 | 316 | 182 | 3 | 8 | 319 | 33 | 348 | 3.86e-78 | 242 |
| MS.gene069341.t1 | MTR_2g088200 | 41.270 | 315 | 180 | 4 | 10 | 319 | 34 | 348 | 4.04e-76 | 237 |
| MS.gene069341.t1 | MTR_8g007325 | 62.304 | 191 | 71 | 1 | 7 | 197 | 29 | 218 | 2.30e-75 | 231 |
| MS.gene069341.t1 | MTR_5g095030 | 53.906 | 128 | 59 | 0 | 193 | 320 | 9 | 136 | 7.88e-44 | 147 |
| MS.gene069341.t1 | MTR_4g086410 | 35.366 | 246 | 145 | 6 | 80 | 319 | 385 | 622 | 1.02e-29 | 119 |
| MS.gene069341.t1 | MTR_4g086400 | 34.959 | 246 | 146 | 6 | 80 | 319 | 245 | 482 | 1.19e-29 | 118 |
| MS.gene069341.t1 | MTR_4g086400 | 34.959 | 246 | 146 | 6 | 80 | 319 | 385 | 622 | 2.21e-29 | 118 |
| MS.gene069341.t1 | MTR_3g093620 | 26.335 | 281 | 183 | 8 | 48 | 317 | 68 | 335 | 7.56e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069341.t1 | AT1G65560 | 70.154 | 325 | 93 | 3 | 1 | 322 | 27 | 350 | 9.04e-168 | 470 |
| MS.gene069341.t1 | AT1G26320 | 64.968 | 314 | 103 | 4 | 15 | 322 | 39 | 351 | 1.88e-142 | 406 |
| MS.gene069341.t1 | AT5G16990 | 65.260 | 308 | 103 | 3 | 18 | 322 | 37 | 343 | 2.96e-142 | 405 |
| MS.gene069341.t1 | AT1G65560 | 71.218 | 271 | 75 | 2 | 55 | 322 | 4 | 274 | 1.58e-140 | 398 |
| MS.gene069341.t1 | AT5G16970 | 63.754 | 309 | 107 | 3 | 18 | 322 | 38 | 345 | 9.63e-140 | 399 |
| MS.gene069341.t1 | AT3G03080 | 64.610 | 308 | 105 | 2 | 18 | 322 | 44 | 350 | 1.22e-139 | 399 |
| MS.gene069341.t1 | AT1G26320 | 63.694 | 314 | 102 | 5 | 15 | 322 | 39 | 346 | 1.01e-137 | 394 |
| MS.gene069341.t1 | AT5G17000 | 63.694 | 314 | 107 | 4 | 15 | 322 | 33 | 345 | 2.00e-136 | 390 |
| MS.gene069341.t1 | AT5G37980 | 61.935 | 310 | 112 | 3 | 18 | 322 | 45 | 353 | 1.92e-135 | 389 |
| MS.gene069341.t1 | AT5G16960 | 63.725 | 306 | 108 | 1 | 18 | 320 | 39 | 344 | 7.70e-135 | 387 |
| MS.gene069341.t1 | AT5G16960 | 63.725 | 306 | 108 | 1 | 18 | 320 | 39 | 344 | 7.70e-135 | 387 |
| MS.gene069341.t1 | AT5G37940 | 60.645 | 310 | 116 | 3 | 18 | 322 | 45 | 353 | 4.01e-133 | 382 |
| MS.gene069341.t1 | AT5G38000 | 59.740 | 308 | 118 | 3 | 18 | 320 | 45 | 351 | 1.59e-129 | 374 |
| MS.gene069341.t1 | AT3G59845 | 60.458 | 306 | 117 | 2 | 18 | 320 | 42 | 346 | 8.97e-129 | 371 |
| MS.gene069341.t1 | AT5G38000 | 59.322 | 295 | 114 | 3 | 18 | 307 | 45 | 338 | 1.20e-122 | 356 |
| MS.gene069341.t1 | AT5G38000 | 55.195 | 308 | 113 | 4 | 18 | 320 | 45 | 332 | 1.66e-112 | 330 |
| MS.gene069341.t1 | AT5G16980 | 68.398 | 231 | 72 | 1 | 92 | 322 | 10 | 239 | 2.24e-110 | 320 |
| MS.gene069341.t1 | AT5G16980 | 68.398 | 231 | 72 | 1 | 92 | 322 | 10 | 239 | 2.24e-110 | 320 |
| MS.gene069341.t1 | AT5G16980 | 68.398 | 231 | 72 | 1 | 92 | 322 | 76 | 305 | 4.62e-110 | 322 |
| MS.gene069341.t1 | AT3G59845 | 63.115 | 244 | 89 | 1 | 77 | 320 | 2 | 244 | 5.94e-107 | 312 |
| MS.gene069341.t1 | AT5G17000 | 63.684 | 190 | 62 | 4 | 15 | 198 | 33 | 221 | 2.06e-76 | 234 |
| MS.gene069341.t1 | AT1G49670 | 32.028 | 281 | 174 | 8 | 48 | 319 | 346 | 618 | 1.98e-29 | 118 |
| MS.gene069341.t1 | AT1G49670 | 30.201 | 298 | 180 | 8 | 48 | 319 | 346 | 641 | 1.77e-27 | 113 |
| MS.gene069341.t1 | AT5G37960 | 39.759 | 83 | 50 | 0 | 237 | 319 | 21 | 103 | 2.30e-13 | 65.9 |
Find 60 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCTGTTCCAAGAATTT+TGG | 0.102012 | 7.1:-87446342 | None:intergenic |
| TCCTTCCATCTTGGTCTTCT+AGG | 0.131701 | 7.1:+87444550 | MS.gene069341:CDS |
| TAATCACCGGCCTTGAAATT+TGG | 0.149936 | 7.1:-87444436 | None:intergenic |
| GATTACATTTCGGGGTTTAC+TGG | 0.217196 | 7.1:+87444454 | MS.gene069341:CDS |
| GAACTTGTACCCAAAATTCT+TGG | 0.233497 | 7.1:+87446332 | MS.gene069341:CDS |
| CAAGGCCGGTGATTACATTT+CGG | 0.268678 | 7.1:+87444444 | MS.gene069341:CDS |
| ACTTGGATGCAGCTCTTAAA+AGG | 0.292712 | 7.1:+87445874 | MS.gene069341:CDS |
| GATAAATTGTGAATCCCTTT+AGG | 0.298286 | 7.1:-87446255 | None:intergenic |
| TGCTATGTTGTTGGAAGTGC+TGG | 0.328797 | 7.1:+87444819 | MS.gene069341:CDS |
| ATTCCCCTTTCCTTCCATCT+TGG | 0.335942 | 7.1:+87444541 | MS.gene069341:CDS |
| AAGGCCGGTGATTACATTTC+GGG | 0.337567 | 7.1:+87444445 | MS.gene069341:CDS |
| CGCATACGACCACGCATGTA+TGG | 0.365643 | 7.1:-87442937 | None:intergenic |
| AAATAAATGTCAATGCCTTC+AGG | 0.368926 | 7.1:-87446129 | None:intergenic |
| TGCCATGAATCTTCATGTTA+AGG | 0.372540 | 7.1:-87446188 | None:intergenic |
| ATGAAGGCGCTTGAAGGATT+TGG | 0.393763 | 7.1:+87444385 | MS.gene069341:intron |
| AAAACATTTCTGATCCTAAA+GGG | 0.395479 | 7.1:+87446241 | MS.gene069341:CDS |
| ACATTTCGGGGTTTACTGGC+TGG | 0.403093 | 7.1:+87444458 | MS.gene069341:CDS |
| GTACCCAAAATTCTTGGAAC+AGG | 0.409285 | 7.1:+87446338 | MS.gene069341:CDS |
| CTCCTTAACATGAAGATTCA+TGG | 0.417661 | 7.1:+87446186 | MS.gene069341:CDS |
| CTATGAATGAAGGCGCTTGA+AGG | 0.436870 | 7.1:+87444379 | MS.gene069341:intron |
| AGGTTGGTATATACCTTAGA+AGG | 0.440537 | 7.1:-87442994 | None:intergenic |
| CATGGCAGAATTGCAGTTTG+TGG | 0.452504 | 7.1:+87446204 | MS.gene069341:CDS |
| CCGGGATTTACAGCGTATGC+TGG | 0.455021 | 7.1:+87444693 | MS.gene069341:CDS |
| CAAAACATTTCTGATCCTAA+AGG | 0.456770 | 7.1:+87446240 | MS.gene069341:CDS |
| TGAAGACATGAATGAAGGCT+TGG | 0.469697 | 7.1:+87446398 | MS.gene069341:CDS |
| GGTGCTGTGGGTCAACTTGT+TGG | 0.474317 | 7.1:+87444774 | MS.gene069341:CDS |
| ATCTGATAATCCAAATTTCA+AGG | 0.478005 | 7.1:+87444426 | MS.gene069341:CDS |
| TTATAAGCGCATAAGAATGC+AGG | 0.478286 | 7.1:+87446287 | MS.gene069341:CDS |
| GAACTTCTAAAGAATAAACT+TGG | 0.481093 | 7.1:+87445816 | MS.gene069341:CDS |
| TTGCATGGTTGCTATGTTGT+TGG | 0.484821 | 7.1:+87444810 | MS.gene069341:CDS |
| GAAAGGGGAATGTGATCATC+CGG | 0.494018 | 7.1:-87444529 | None:intergenic |
| TATACCTTAGAAGGAACAAA+AGG | 0.501294 | 7.1:-87442985 | None:intergenic |
| ATCAGCAGCATCAGGTGCTG+TGG | 0.501901 | 7.1:+87444761 | MS.gene069341:CDS |
| ATGGCAGAATTGCAGTTTGT+GGG | 0.508223 | 7.1:+87446205 | MS.gene069341:CDS |
| CTATAAGGAAGAATTAGACT+TGG | 0.510802 | 7.1:+87445857 | MS.gene069341:CDS |
| CATTTCGGGGTTTACTGGCT+GGG | 0.512700 | 7.1:+87444459 | MS.gene069341:CDS |
| AAGACCAAGATGGAAGGAAA+GGG | 0.513146 | 7.1:-87444545 | None:intergenic |
| AAAAGTCCAACAAAAGCAGC+TGG | 0.517496 | 7.1:-87446429 | None:intergenic |
| AAGTGCTGGCTCAAAAGAAA+AGG | 0.532764 | 7.1:+87444833 | MS.gene069341:CDS |
| CCAGCATACGCTGTAAATCC+CGG | 0.538529 | 7.1:-87444693 | None:intergenic |
| AGGCCGGTGATTACATTTCG+GGG | 0.548894 | 7.1:+87444446 | MS.gene069341:CDS |
| GGTCAACTTGCTAAGTTGCA+TGG | 0.556467 | 7.1:+87444795 | MS.gene069341:CDS |
| GATAATCCAAATTTCAAGGC+CGG | 0.560730 | 7.1:+87444430 | MS.gene069341:CDS |
| GAAGACCAAGATGGAAGGAA+AGG | 0.562674 | 7.1:-87444546 | None:intergenic |
| GTTTCGAGTTTCTACAAACA+AGG | 0.573760 | 7.1:+87446360 | MS.gene069341:CDS |
| TATAAGCGCATAAGAATGCA+GGG | 0.579765 | 7.1:+87446288 | MS.gene069341:CDS |
| TCAGCAGCATCAGGTGCTGT+GGG | 0.584990 | 7.1:+87444762 | MS.gene069341:CDS |
| CATGAATCTTCATGTTAAGG+AGG | 0.588714 | 7.1:-87446185 | None:intergenic |
| AAACCCCGAAATGTAATCAC+CGG | 0.592715 | 7.1:-87444449 | None:intergenic |
| ACCTAGAAGACCAAGATGGA+AGG | 0.604666 | 7.1:-87444551 | None:intergenic |
| TTGACAAGAAGAGCTTGTGA+TGG | 0.607001 | 7.1:-87442892 | None:intergenic |
| TTCGGGGTTTACTGGCTGGG+AGG | 0.611452 | 7.1:+87444462 | MS.gene069341:CDS |
| GCTTACCGACGTTCTTGCCG+AGG | 0.623068 | 7.1:-87446452 | None:intergenic |
| ATGAATCTTCATGTTAAGGA+GGG | 0.628175 | 7.1:-87446184 | None:intergenic |
| ACCTTAGAAGGAACAAAAGG+AGG | 0.628698 | 7.1:-87442982 | None:intergenic |
| TATGCGCTTATAAATGAGAG+AGG | 0.629309 | 7.1:-87446277 | None:intergenic |
| AGGTACCTAGAAGACCAAGA+TGG | 0.642818 | 7.1:-87444555 | None:intergenic |
| TCTTGTGATCCATACATGCG+TGG | 0.645573 | 7.1:+87442928 | MS.gene069341:CDS |
| AGACCAAGATGGAAGGAAAG+GGG | 0.653687 | 7.1:-87444544 | None:intergenic |
| GGGCGGTGACATGCTTGATG+CGG | 0.708431 | 7.1:+87446161 | MS.gene069341:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAAATATGATTAAA+CGG | - | chr7.1:87445616-87445635 | None:intergenic | 10.0% |
| !! | ATAGATTAAAAATAATTTAG+AGG | + | chr7.1:87444182-87444201 | MS.gene069341:intron | 10.0% |
| !! | AAATAGTAGAAAATAACATA+TGG | - | chr7.1:87445540-87445559 | None:intergenic | 15.0% |
| !! | AACAACATATAGTAAATTAA+GGG | - | chr7.1:87443024-87443043 | None:intergenic | 15.0% |
| !! | ATATATTAAGTGCTTAATTA+CGG | + | chr7.1:87443462-87443481 | MS.gene069341:intron | 15.0% |
| !! | ATTTACTATATGTTGTTAAT+TGG | + | chr7.1:87443027-87443046 | MS.gene069341:intron | 15.0% |
| !! | CAAAATAAAATAAAGTCAAA+TGG | - | chr7.1:87443868-87443887 | None:intergenic | 15.0% |
| !! | TAACAACATATAGTAAATTA+AGG | - | chr7.1:87443025-87443044 | None:intergenic | 15.0% |
| !! | TCAAAATTAATTCTCTTTAT+AGG | - | chr7.1:87444031-87444050 | None:intergenic | 15.0% |
| !!! | AATTGTTTCTCATTATATAT+AGG | - | chr7.1:87443577-87443596 | None:intergenic | 15.0% |
| !!! | GGATATTATAAAGTTTTTAA+TGG | + | chr7.1:87445913-87445932 | MS.gene069341:intron | 15.0% |
| !! | AAAAAAGTTTAGCTAAAAGA+AGG | - | chr7.1:87446084-87446103 | None:intergenic | 20.0% |
| !! | AACCAAACATCATATAAATA+TGG | - | chr7.1:87444008-87444027 | None:intergenic | 20.0% |
| !! | AATGAACTAATAGACTATAA+TGG | - | chr7.1:87443150-87443169 | None:intergenic | 20.0% |
| !! | GAACTATAGAAATGTAAAAA+TGG | - | chr7.1:87444208-87444227 | None:intergenic | 20.0% |
| !! | GATAGATTTAAATTAGATGA+GGG | + | chr7.1:87443670-87443689 | MS.gene069341:intron | 20.0% |
| !! | TAAGATAAGCTAAATAAACT+GGG | - | chr7.1:87445458-87445477 | None:intergenic | 20.0% |
| !! | TAATGAATACAAAATCATGA+AGG | + | chr7.1:87445116-87445135 | MS.gene069341:intron | 20.0% |
| !! | TACTTCTACTATGTTATTAA+AGG | - | chr7.1:87445321-87445340 | None:intergenic | 20.0% |
| !! | TATAGTAAATTAAGGGATAA+AGG | - | chr7.1:87443017-87443036 | None:intergenic | 20.0% |
| !! | TATATTAAGTGCTTAATTAC+GGG | + | chr7.1:87443463-87443482 | MS.gene069341:intron | 20.0% |
| !! | TGATAGATTTAAATTAGATG+AGG | + | chr7.1:87443669-87443688 | MS.gene069341:intron | 20.0% |
| !! | TTAATAACATAGTAGAAGTA+AGG | + | chr7.1:87445321-87445340 | MS.gene069341:intron | 20.0% |
| !!! | ATTAATCCGTTTTAATGTAT+AGG | + | chr7.1:87444666-87444685 | MS.gene069341:intron | 20.0% |
| !!! | CATTAAAACGGATTAATTAT+TGG | - | chr7.1:87444663-87444682 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTATAAACTTTTG+AGG | + | chr7.1:87443345-87443364 | MS.gene069341:intron | 20.0% |
| ! | AAAACATTTCTGATCCTAAA+GGG | + | chr7.1:87446241-87446260 | MS.gene069341:CDS | 25.0% |
| ! | AAACTATAGAGGATAGTTTA+TGG | - | chr7.1:87443813-87443832 | None:intergenic | 25.0% |
| ! | AAAGTGAATTGAATTTGAAG+TGG | - | chr7.1:87444129-87444148 | None:intergenic | 25.0% |
| ! | AACTATAGAGGATAGTTTAT+GGG | - | chr7.1:87443812-87443831 | None:intergenic | 25.0% |
| ! | AAGTATTTAGCATTCTAGAT+AGG | - | chr7.1:87444578-87444597 | None:intergenic | 25.0% |
| ! | AATAACATTAGCGAAAAATG+AGG | - | chr7.1:87444295-87444314 | None:intergenic | 25.0% |
| ! | AGTAGAAAATAACATATGGA+TGG | - | chr7.1:87445536-87445555 | None:intergenic | 25.0% |
| ! | ATATTAAGTGCTTAATTACG+GGG | + | chr7.1:87443464-87443483 | MS.gene069341:intron | 25.0% |
| ! | ATCTGATAATCCAAATTTCA+AGG | + | chr7.1:87444426-87444445 | MS.gene069341:CDS | 25.0% |
| ! | ATGTATTCATAAGCTATCTA+AGG | - | chr7.1:87445574-87445593 | None:intergenic | 25.0% |
| ! | ATTGAATCATTTGAACTTAC+TGG | + | chr7.1:87443250-87443269 | MS.gene069341:intron | 25.0% |
| ! | ATTTAAATTTCCTGAGACAA+TGG | - | chr7.1:87445943-87445962 | None:intergenic | 25.0% |
| ! | ATTTAATTCTGGATTTCATC+AGG | - | chr7.1:87445216-87445235 | None:intergenic | 25.0% |
| ! | GACCATATTTATATGATGTT+TGG | + | chr7.1:87444003-87444022 | MS.gene069341:intron | 25.0% |
| ! | GTAAGATAAGCTAAATAAAC+TGG | - | chr7.1:87445459-87445478 | None:intergenic | 25.0% |
| ! | TCAACCTAATGTAATAGATT+TGG | - | chr7.1:87445798-87445817 | None:intergenic | 25.0% |
| ! | TGTTCATAAGCTATAAGAAA+GGG | - | chr7.1:87445394-87445413 | None:intergenic | 25.0% |
| ! | TTGTTCATAAGCTATAAGAA+AGG | - | chr7.1:87445395-87445414 | None:intergenic | 25.0% |
| !! | AATTTGAAGTGGTTTATGTT+TGG | - | chr7.1:87444118-87444137 | None:intergenic | 25.0% |
| !! | AGAAAAAACCATCTGAAATT+AGG | + | chr7.1:87445161-87445180 | MS.gene069341:intron | 25.0% |
| !! | GAAAAAACCATCTGAAATTA+GGG | + | chr7.1:87445162-87445181 | MS.gene069341:intron | 25.0% |
| !! | GAACTTCTAAAGAATAAACT+TGG | + | chr7.1:87445816-87445835 | MS.gene069341:CDS | 25.0% |
| !! | TCCTTGATCAATACATTTTT+CGG | - | chr7.1:87445088-87445107 | None:intergenic | 25.0% |
| !!! | AAAACATATTCTCCACTTTT+TGG | - | chr7.1:87444738-87444757 | None:intergenic | 25.0% |
| !!! | AAACATATTCTCCACTTTTT+GGG | - | chr7.1:87444737-87444756 | None:intergenic | 25.0% |
| !!! | GACATTTATTTTGATAACGT+GGG | + | chr7.1:87446141-87446160 | MS.gene069341:CDS | 25.0% |
| !!! | TAAAACGGATTAATTATTGG+AGG | - | chr7.1:87444660-87444679 | None:intergenic | 25.0% |
| !!! | TATTTTGAAGACATGAATGA+AGG | + | chr7.1:87446393-87446412 | MS.gene069341:CDS | 25.0% |
| !!! | TGACATTTATTTTGATAACG+TGG | + | chr7.1:87446140-87446159 | MS.gene069341:CDS | 25.0% |
| !!! | TTTAGCTAAACTTTTTTCGT+TGG | + | chr7.1:87446087-87446106 | MS.gene069341:intron | 25.0% |
| AAAAATGAGGAAAAGAGGTT+AGG | - | chr7.1:87444282-87444301 | None:intergenic | 30.0% | |
| AAATAAATGTCAATGCCTTC+AGG | - | chr7.1:87446132-87446151 | None:intergenic | 30.0% | |
| AAGTAAGGAGAACAACATAA+GGG | + | chr7.1:87445336-87445355 | MS.gene069341:intron | 30.0% | |
| ACCAATACAAACTCAAGTTA+AGG | - | chr7.1:87443971-87443990 | None:intergenic | 30.0% | |
| ATGAATCTTCATGTTAAGGA+GGG | - | chr7.1:87446187-87446206 | None:intergenic | 30.0% | |
| CAAAACATTTCTGATCCTAA+AGG | + | chr7.1:87446240-87446259 | MS.gene069341:CDS | 30.0% | |
| CCAATACAAACTCAAGTTAA+GGG | - | chr7.1:87443970-87443989 | None:intergenic | 30.0% | |
| CTATAAGGAAGAATTAGACT+TGG | + | chr7.1:87445857-87445876 | MS.gene069341:CDS | 30.0% | |
| CTCACCAAATCTATTACATT+AGG | + | chr7.1:87445791-87445810 | MS.gene069341:intron | 30.0% | |
| CTTAAACCAGACATTTAGTT+TGG | + | chr7.1:87445756-87445775 | MS.gene069341:intron | 30.0% | |
| CTTTATACTAAGTGCTTCTT+TGG | + | chr7.1:87443929-87443948 | MS.gene069341:intron | 30.0% | |
| GAACTTATGAAAGCAACTTA+TGG | + | chr7.1:87443781-87443800 | MS.gene069341:intron | 30.0% | |
| GATAAATTGTGAATCCCTTT+AGG | - | chr7.1:87446258-87446277 | None:intergenic | 30.0% | |
| GGCATTCCTATACATTAAAA+CGG | - | chr7.1:87444675-87444694 | None:intergenic | 30.0% | |
| GTAAATTAAGGGATAAAGGT+TGG | - | chr7.1:87443013-87443032 | None:intergenic | 30.0% | |
| GTTTCTAAATGTTACACTTG+CGG | - | chr7.1:87445240-87445259 | None:intergenic | 30.0% | |
| TATACCTTAGAAGGAACAAA+AGG | - | chr7.1:87442988-87443007 | None:intergenic | 30.0% | |
| TTATTCTCTATAGATGTCAG+TGG | + | chr7.1:87445295-87445314 | MS.gene069341:intron | 30.0% | |
| TTCTACAAGAGTTTAAATCC+TGG | + | chr7.1:87444596-87444615 | MS.gene069341:intron | 30.0% | |
| ! | AAACCTGTTCCAAGAATTTT+GGG | - | chr7.1:87446344-87446363 | None:intergenic | 30.0% |
| ! | ACCGAAAAATGTATTGATCA+AGG | + | chr7.1:87445084-87445103 | MS.gene069341:intron | 30.0% |
| ! | CAGTTACGAAGTTTTACTTT+TGG | - | chr7.1:87444892-87444911 | None:intergenic | 30.0% |
| ! | GTTGCTTTCTTAAACTATAG+AGG | - | chr7.1:87443824-87443843 | None:intergenic | 30.0% |
| ! | TCTTGCAATCAATTTTTGCT+TGG | - | chr7.1:87444998-87445017 | None:intergenic | 30.0% |
| ! | TTTTAATGTATAGGAATGCC+GGG | + | chr7.1:87444675-87444694 | MS.gene069341:intron | 30.0% |
| !! | GTTTTAATGTATAGGAATGC+CGG | + | chr7.1:87444674-87444693 | MS.gene069341:intron | 30.0% |
| !!! | AACATATTCTCCACTTTTTG+GGG | - | chr7.1:87444736-87444755 | None:intergenic | 30.0% |
| !!! | ATTTATTTTGATAACGTGGG+CGG | + | chr7.1:87446144-87446163 | MS.gene069341:CDS | 30.0% |
| AAAGGTGAGTTTCATGTACA+AGG | + | chr7.1:87445892-87445911 | MS.gene069341:intron | 35.0% | |
| AACTTGAGTTTGCATTGCAT+TGG | + | chr7.1:87443539-87443558 | MS.gene069341:intron | 35.0% | |
| AAGTTGAGGGATTTCAATTG+TGG | - | chr7.1:87443524-87443543 | None:intergenic | 35.0% | |
| ACAAGCACTTAAACTGTATG+TGG | - | chr7.1:87443495-87443514 | None:intergenic | 35.0% | |
| ACACTTGCGGTATTTAATTC+TGG | - | chr7.1:87445227-87445246 | None:intergenic | 35.0% | |
| ACATTTCTATAGTTCAGCAC+AGG | + | chr7.1:87443702-87443721 | MS.gene069341:intron | 35.0% | |
| AGCAAACCAAACTAAATGTC+TGG | - | chr7.1:87445765-87445784 | None:intergenic | 35.0% | |
| AGTAAGGAGAACAACATAAG+GGG | + | chr7.1:87445337-87445356 | MS.gene069341:intron | 35.0% | |
| ATAAGCTATAAGAAAGGGTG+TGG | - | chr7.1:87445389-87445408 | None:intergenic | 35.0% | |
| ATACAGTTTAAGTGCTTGTC+TGG | + | chr7.1:87443496-87443515 | MS.gene069341:intron | 35.0% | |
| CATGAATCTTCATGTTAAGG+AGG | - | chr7.1:87446188-87446207 | None:intergenic | 35.0% | |
| CTCACAAGTTAGCATATTTC+GGG | - | chr7.1:87445266-87445285 | None:intergenic | 35.0% | |
| CTCCTTAACATGAAGATTCA+TGG | + | chr7.1:87446186-87446205 | MS.gene069341:CDS | 35.0% | |
| GAACTTGTACCCAAAATTCT+TGG | + | chr7.1:87446332-87446351 | MS.gene069341:CDS | 35.0% | |
| GAAGTAAGGAGAACAACATA+AGG | + | chr7.1:87445335-87445354 | MS.gene069341:intron | 35.0% | |
| GATAATCCAAATTTCAAGGC+CGG | + | chr7.1:87444430-87444449 | MS.gene069341:CDS | 35.0% | |
| GCTCACAAGTTAGCATATTT+CGG | - | chr7.1:87445267-87445286 | None:intergenic | 35.0% | |
| TAGCGAAAAATGAGGAAAAG+AGG | - | chr7.1:87444287-87444306 | None:intergenic | 35.0% | |
| TATAAGCGCATAAGAATGCA+GGG | + | chr7.1:87446288-87446307 | MS.gene069341:CDS | 35.0% | |
| TATGCGCTTATAAATGAGAG+AGG | - | chr7.1:87446280-87446299 | None:intergenic | 35.0% | |
| TCACAAGTTAGCATATTTCG+GGG | - | chr7.1:87445265-87445284 | None:intergenic | 35.0% | |
| TGAATACAGCTTATCCAAAC+AGG | - | chr7.1:87446031-87446050 | None:intergenic | 35.0% | |
| TGATTTGAACCAAAGGCTAA+AGG | - | chr7.1:87444623-87444642 | None:intergenic | 35.0% | |
| TGCCATGAATCTTCATGTTA+AGG | - | chr7.1:87446191-87446210 | None:intergenic | 35.0% | |
| TGCGTCTAATCTATGAATGA+AGG | + | chr7.1:87444369-87444388 | MS.gene069341:intron | 35.0% | |
| TTAGTCTCCCTAATTTCAGA+TGG | - | chr7.1:87445172-87445191 | None:intergenic | 35.0% | |
| TTATAAGCGCATAAGAATGC+AGG | + | chr7.1:87446287-87446306 | MS.gene069341:CDS | 35.0% | |
| ! | ATTGACAGGTATTTTCCTGA+AGG | + | chr7.1:87446114-87446133 | MS.gene069341:intron | 35.0% |
| ! | CCCTTAACTTGAGTTTGTAT+TGG | + | chr7.1:87443967-87443986 | MS.gene069341:intron | 35.0% |
| ! | GAAACCTGTTCCAAGAATTT+TGG | - | chr7.1:87446345-87446364 | None:intergenic | 35.0% |
| ! | GACATGTAAGTCTTGTGTTA+GGG | + | chr7.1:87443192-87443211 | MS.gene069341:intron | 35.0% |
| ! | TAATGGTTTTCCATTGTCTC+AGG | + | chr7.1:87445930-87445949 | MS.gene069341:intron | 35.0% |
| ! | TGACATGTAAGTCTTGTGTT+AGG | + | chr7.1:87443191-87443210 | MS.gene069341:intron | 35.0% |
| ! | TGCAATCAATTTTTGCTTGG+AGG | - | chr7.1:87444995-87445014 | None:intergenic | 35.0% |
| !! | ACTCAACTGATTTGAACCAA+AGG | - | chr7.1:87444630-87444649 | None:intergenic | 35.0% |
| !! | AGGTTGGTATATACCTTAGA+AGG | - | chr7.1:87442997-87443016 | None:intergenic | 35.0% |
| !! | CGACGAAGCTTTTAACTATA+AGG | + | chr7.1:87445842-87445861 | MS.gene069341:CDS | 35.0% |
| !! | GAGTTTGTATTGGTTAAACG+TGG | + | chr7.1:87443977-87443996 | MS.gene069341:intron | 35.0% |
| !! | GTTAGTTCTAAGAGTCTGTT+TGG | + | chr7.1:87443224-87443243 | MS.gene069341:intron | 35.0% |
| !! | GTTTCGAGTTTCTACAAACA+AGG | + | chr7.1:87446360-87446379 | MS.gene069341:CDS | 35.0% |
| !!! | AGGACAGTTTTTTCTGCAAT+AGG | - | chr7.1:87445196-87445215 | None:intergenic | 35.0% |
| AAAAGTCCAACAAAAGCAGC+TGG | - | chr7.1:87446432-87446451 | None:intergenic | 40.0% | |
| AAACCCCGAAATGTAATCAC+CGG | - | chr7.1:87444452-87444471 | None:intergenic | 40.0% | |
| AAACTTCGTAACTGTGTCGA+TGG | + | chr7.1:87444898-87444917 | MS.gene069341:intron | 40.0% | |
| AAGACCAAGATGGAAGGAAA+GGG | - | chr7.1:87444548-87444567 | None:intergenic | 40.0% | |
| AAGCACTTCTGAGTGCTAAT+CGG | + | chr7.1:87446003-87446022 | MS.gene069341:intron | 40.0% | |
| ACCTTAGAAGGAACAAAAGG+AGG | - | chr7.1:87442985-87443004 | None:intergenic | 40.0% | |
| ACTTGGATGCAGCTCTTAAA+AGG | + | chr7.1:87445874-87445893 | MS.gene069341:CDS | 40.0% | |
| ATGGCAGAATTGCAGTTTGT+GGG | + | chr7.1:87446205-87446224 | MS.gene069341:CDS | 40.0% | |
| GATTACATTTCGGGGTTTAC+TGG | + | chr7.1:87444454-87444473 | MS.gene069341:CDS | 40.0% | |
| GTACCCAAAATTCTTGGAAC+AGG | + | chr7.1:87446338-87446357 | MS.gene069341:CDS | 40.0% | |
| GTGTCTGACACATACACATA+CGG | + | chr7.1:87443117-87443136 | MS.gene069341:intron | 40.0% | |
| TAATCACCGGCCTTGAAATT+TGG | - | chr7.1:87444439-87444458 | None:intergenic | 40.0% | |
| TGAAGACATGAATGAAGGCT+TGG | + | chr7.1:87446398-87446417 | MS.gene069341:CDS | 40.0% | |
| TTGACAAGAAGAGCTTGTGA+TGG | - | chr7.1:87442895-87442914 | None:intergenic | 40.0% | |
| TTGCATGGTTGCTATGTTGT+TGG | + | chr7.1:87444810-87444829 | MS.gene069341:CDS | 40.0% | |
| ! | AAAGGGTGTGGCATAATTTC+TGG | - | chr7.1:87445377-87445396 | None:intergenic | 40.0% |
| ! | AGCGTATGCTGGATTTTATG+AGG | + | chr7.1:87444704-87444723 | MS.gene069341:CDS | 40.0% |
| ! | GCTTTTGTTGGACTTTTCCT+CGG | + | chr7.1:87446435-87446454 | MS.gene069341:CDS | 40.0% |
| ! | GTGCTTCTTTGGTTCAACAA+TGG | + | chr7.1:87443940-87443959 | MS.gene069341:intron | 40.0% |
| ! | GTTTTTGTATCAGCAGCATC+AGG | + | chr7.1:87444753-87444772 | MS.gene069341:CDS | 40.0% |
| ! | TCCTCCTTTTGTTCCTTCTA+AGG | + | chr7.1:87442981-87443000 | MS.gene069341:CDS | 40.0% |
| ! | TGAGTTTGCATTGCATTGGT+TGG | + | chr7.1:87443543-87443562 | MS.gene069341:intron | 40.0% |
| ! | TGCAATGCAAACTCAAGTTG+AGG | - | chr7.1:87443538-87443557 | None:intergenic | 40.0% |
| !! | AAGTGCTGGCTCAAAAGAAA+AGG | + | chr7.1:87444833-87444852 | MS.gene069341:CDS | 40.0% |
| !! | AGTTCTAAGAGTCTGTTTGG+TGG | + | chr7.1:87443227-87443246 | MS.gene069341:intron | 40.0% |
| !! | CACTCAGAAGTGCTTGTATA+CGG | - | chr7.1:87445998-87446017 | None:intergenic | 40.0% |
| !! | GAGTTTGCATTGCATTGGTT+GGG | + | chr7.1:87443544-87443563 | MS.gene069341:intron | 40.0% |
| !! | GCAATGCAAACTCAAGTTGA+GGG | - | chr7.1:87443537-87443556 | None:intergenic | 40.0% |
| !! | TTAGATCAGAAGTGTCGTGT+CGG | - | chr7.1:87443087-87443106 | None:intergenic | 40.0% |
| !!! | TTTTCGTTGGCTCAATTGAC+AGG | + | chr7.1:87446100-87446119 | MS.gene069341:intron | 40.0% |
| AAGGCCGGTGATTACATTTC+GGG | + | chr7.1:87444445-87444464 | MS.gene069341:CDS | 45.0% | |
| ACCTAGAAGACCAAGATGGA+AGG | - | chr7.1:87444554-87444573 | None:intergenic | 45.0% | |
| AGACCAAGATGGAAGGAAAG+GGG | - | chr7.1:87444547-87444566 | None:intergenic | 45.0% | |
| AGCACTTCTGAGTGCTAATC+GGG | + | chr7.1:87446004-87446023 | MS.gene069341:intron | 45.0% | |
| AGGTACCTAGAAGACCAAGA+TGG | - | chr7.1:87444558-87444577 | None:intergenic | 45.0% | |
| ATTCCCCTTTCCTTCCATCT+TGG | + | chr7.1:87444541-87444560 | MS.gene069341:CDS | 45.0% | |
| CAAGGCCGGTGATTACATTT+CGG | + | chr7.1:87444444-87444463 | MS.gene069341:CDS | 45.0% | |
| CATGGCAGAATTGCAGTTTG+TGG | + | chr7.1:87446204-87446223 | MS.gene069341:CDS | 45.0% | |
| CCAGTTGCGAAAAATTGAGC+CGG | + | chr7.1:87444510-87444529 | MS.gene069341:CDS | 45.0% | |
| GAAAGGGGAATGTGATCATC+CGG | - | chr7.1:87444532-87444551 | None:intergenic | 45.0% | |
| GAAGACCAAGATGGAAGGAA+AGG | - | chr7.1:87444549-87444568 | None:intergenic | 45.0% | |
| TCTTGTGATCCATACATGCG+TGG | + | chr7.1:87442928-87442947 | MS.gene069341:CDS | 45.0% | |
| ! | AATCCTGGTCCTTTAGCCTT+TGG | + | chr7.1:87444611-87444630 | MS.gene069341:intron | 45.0% |
| ! | CTGTGTCGATGGTTTCGTTT+AGG | + | chr7.1:87444909-87444928 | MS.gene069341:intron | 45.0% |
| ! | GGTCGTATGCGTGATTTTCA+TGG | + | chr7.1:87442949-87442968 | MS.gene069341:CDS | 45.0% |
| ! | TCCTTCCATCTTGGTCTTCT+AGG | + | chr7.1:87444550-87444569 | MS.gene069341:CDS | 45.0% |
| ! | TGCTATGTTGTTGGAAGTGC+TGG | + | chr7.1:87444819-87444838 | MS.gene069341:CDS | 45.0% |
| !! | ATGAAGGCGCTTGAAGGATT+TGG | + | chr7.1:87444385-87444404 | MS.gene069341:intron | 45.0% |
| !! | CTATGAATGAAGGCGCTTGA+AGG | + | chr7.1:87444379-87444398 | MS.gene069341:intron | 45.0% |
| !! | GGTCAACTTGCTAAGTTGCA+TGG | + | chr7.1:87444795-87444814 | MS.gene069341:CDS | 45.0% |
| !! | GGTGTGGCATAATTTCTGGT+CGG | - | chr7.1:87445373-87445392 | None:intergenic | 45.0% |
| ACATTTCGGGGTTTACTGGC+TGG | + | chr7.1:87444458-87444477 | MS.gene069341:CDS | 50.0% | |
| AGGCCGGTGATTACATTTCG+GGG | + | chr7.1:87444446-87444465 | MS.gene069341:CDS | 50.0% | |
| AGTGCTAATCGGGACCTGTT+TGG | + | chr7.1:87446014-87446033 | MS.gene069341:intron | 50.0% | |
| CCAGCATACGCTGTAAATCC+CGG | - | chr7.1:87444696-87444715 | None:intergenic | 50.0% | |
| GAACCAAAGGCTAAAGGACC+AGG | - | chr7.1:87444617-87444636 | None:intergenic | 50.0% | |
| GAGGTGTGTTCCCCAAAAAG+TGG | + | chr7.1:87444723-87444742 | MS.gene069341:CDS | 50.0% | |
| ! | CATTTCGGGGTTTACTGGCT+GGG | + | chr7.1:87444459-87444478 | MS.gene069341:CDS | 50.0% |
| ! | CCGGCTCAATTTTTCGCAAC+TGG | - | chr7.1:87444513-87444532 | None:intergenic | 50.0% |
| ! | CTTTTCCTCGGCAAGAACGT+CGG | + | chr7.1:87446447-87446466 | MS.gene069341:CDS | 50.0% |
| !!! | AGTGCTCCAGCTGCTTTTGT+TGG | + | chr7.1:87446423-87446442 | MS.gene069341:CDS | 50.0% |
| CCGGGATTTACAGCGTATGC+TGG | + | chr7.1:87444693-87444712 | MS.gene069341:CDS | 55.0% | |
| CGCATACGACCACGCATGTA+TGG | - | chr7.1:87442940-87442959 | None:intergenic | 55.0% | |
| ! | ATCAGCAGCATCAGGTGCTG+TGG | + | chr7.1:87444761-87444780 | MS.gene069341:CDS | 55.0% |
| ! | GGTGCTGTGGGTCAACTTGT+TGG | + | chr7.1:87444774-87444793 | MS.gene069341:CDS | 55.0% |
| ! | TCAGCAGCATCAGGTGCTGT+GGG | + | chr7.1:87444762-87444781 | MS.gene069341:CDS | 55.0% |
| GCTTACCGACGTTCTTGCCG+AGG | - | chr7.1:87446455-87446474 | None:intergenic | 60.0% | |
| GGGCGGTGACATGCTTGATG+CGG | + | chr7.1:87446161-87446180 | MS.gene069341:CDS | 60.0% | |
| ! | TTCGGGGTTTACTGGCTGGG+AGG | + | chr7.1:87444462-87444481 | MS.gene069341:CDS | 60.0% |
| ! | GTGTCGTGTCGGTGCGACAG+AGG | - | chr7.1:87443076-87443095 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 87442844 | 87446500 | 87442844 | ID=MS.gene069341 |
| chr7.1 | mRNA | 87442844 | 87446500 | 87442844 | ID=MS.gene069341.t1;Parent=MS.gene069341 |
| chr7.1 | exon | 87442844 | 87443002 | 87442844 | ID=MS.gene069341.t1.exon1;Parent=MS.gene069341.t1 |
| chr7.1 | CDS | 87442844 | 87443002 | 87442844 | ID=cds.MS.gene069341.t1;Parent=MS.gene069341.t1 |
| chr7.1 | exon | 87444391 | 87444571 | 87444391 | ID=MS.gene069341.t1.exon2;Parent=MS.gene069341.t1 |
| chr7.1 | CDS | 87444391 | 87444571 | 87444391 | ID=cds.MS.gene069341.t1;Parent=MS.gene069341.t1 |
| chr7.1 | exon | 87444688 | 87444854 | 87444688 | ID=MS.gene069341.t1.exon3;Parent=MS.gene069341.t1 |
| chr7.1 | CDS | 87444688 | 87444854 | 87444688 | ID=cds.MS.gene069341.t1;Parent=MS.gene069341.t1 |
| chr7.1 | exon | 87445813 | 87445895 | 87445813 | ID=MS.gene069341.t1.exon4;Parent=MS.gene069341.t1 |
| chr7.1 | CDS | 87445813 | 87445895 | 87445813 | ID=cds.MS.gene069341.t1;Parent=MS.gene069341.t1 |
| chr7.1 | exon | 87446122 | 87446500 | 87446122 | ID=MS.gene069341.t1.exon5;Parent=MS.gene069341.t1 |
| chr7.1 | CDS | 87446122 | 87446500 | 87446122 | ID=cds.MS.gene069341.t1;Parent=MS.gene069341.t1 |
| Gene Sequence |
| Protein sequence |
