Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022737.t1 | ACJ85436.1 | 94.8 | 344 | 18 | 0 | 1 | 344 | 1 | 344 | 1.00E-189 | 672.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022737.t1 | Q39172 | 72.5 | 342 | 90 | 3 | 6 | 344 | 5 | 345 | 8.5e-145 | 514.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022737.t1 | B7FL02 | 94.8 | 344 | 18 | 0 | 1 | 344 | 1 | 344 | 7.3e-190 | 672.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54434 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene39326 | PPI |
| MS.gene042467 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene97874 | PPI |
| MS.gene08162 | MS.gene022737 | PPI |
| MS.gene020077 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene022721 | PPI |
| MS.gene020033 | MS.gene022737 | PPI |
| MS.gene020225 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene022738 | PPI |
| MS.gene39327 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene39313 | PPI |
| MS.gene022737 | MS.gene41778 | PPI |
| MS.gene022722 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene067859 | PPI |
| MS.gene97874 | MS.gene022737 | PPI |
| MS.gene020226 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene022736 | PPI |
| MS.gene020228 | MS.gene022737 | PPI |
| MS.gene020076 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene020227 | PPI |
| MS.gene022737 | MS.gene069341 | PPI |
| MS.gene39312 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene022735 | PPI |
| MS.gene39326 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene45375 | PPI |
| MS.gene022737 | MS.gene39314 | PPI |
| MS.gene020239 | MS.gene022737 | PPI |
| MS.gene39315 | MS.gene022737 | PPI |
| MS.gene022737 | MS.gene54433 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022737.t1 | MTR_8g010030 | 86.919 | 344 | 45 | 0 | 1 | 344 | 1 | 344 | 0.0 | 627 |
| MS.gene022737.t1 | MTR_8g010000 | 87.500 | 344 | 18 | 1 | 1 | 344 | 1 | 319 | 0.0 | 612 |
| MS.gene022737.t1 | MTR_8g010020 | 86.919 | 344 | 13 | 1 | 1 | 344 | 1 | 312 | 0.0 | 594 |
| MS.gene022737.t1 | MTR_8g009820 | 83.188 | 345 | 55 | 2 | 1 | 344 | 60 | 402 | 0.0 | 592 |
| MS.gene022737.t1 | MTR_8g009980 | 79.420 | 345 | 69 | 2 | 1 | 344 | 1 | 344 | 0.0 | 573 |
| MS.gene022737.t1 | MTR_8g009840 | 81.121 | 339 | 60 | 3 | 1 | 338 | 1 | 336 | 0.0 | 568 |
| MS.gene022737.t1 | MTR_8g009830 | 79.420 | 345 | 67 | 3 | 1 | 344 | 1 | 342 | 0.0 | 564 |
| MS.gene022737.t1 | MTR_4g082970 | 67.544 | 342 | 109 | 2 | 4 | 344 | 10 | 350 | 6.85e-163 | 459 |
| MS.gene022737.t1 | MTR_7g406860 | 59.420 | 345 | 138 | 2 | 1 | 344 | 3 | 346 | 9.83e-144 | 410 |
| MS.gene022737.t1 | MTR_8g007325 | 80.455 | 220 | 40 | 2 | 1 | 219 | 1 | 218 | 1.45e-127 | 364 |
| MS.gene022737.t1 | MTR_0011s0280 | 45.376 | 346 | 184 | 2 | 3 | 344 | 2 | 346 | 1.29e-110 | 326 |
| MS.gene022737.t1 | MTR_2g088190 | 40.580 | 345 | 196 | 5 | 4 | 341 | 5 | 347 | 3.30e-83 | 256 |
| MS.gene022737.t1 | MTR_2g088220 | 40.816 | 343 | 198 | 4 | 4 | 341 | 6 | 348 | 5.74e-78 | 243 |
| MS.gene022737.t1 | MTR_2g088200 | 38.506 | 348 | 200 | 6 | 4 | 341 | 5 | 348 | 6.04e-72 | 227 |
| MS.gene022737.t1 | MTR_5g095030 | 57.812 | 128 | 54 | 0 | 215 | 342 | 9 | 136 | 2.56e-49 | 162 |
| MS.gene022737.t1 | MTR_4g086410 | 33.333 | 243 | 147 | 6 | 106 | 341 | 388 | 622 | 1.71e-26 | 110 |
| MS.gene022737.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 139 | 341 | 276 | 482 | 1.82e-26 | 109 |
| MS.gene022737.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 139 | 341 | 416 | 622 | 2.47e-26 | 110 |
| MS.gene022737.t1 | MTR_5g095020 | 50.877 | 57 | 27 | 1 | 29 | 85 | 6 | 61 | 3.74e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022737.t1 | AT5G16970 | 72.515 | 342 | 90 | 3 | 6 | 344 | 5 | 345 | 0.0 | 518 |
| MS.gene022737.t1 | AT5G16990 | 73.021 | 341 | 89 | 3 | 6 | 344 | 4 | 343 | 0.0 | 513 |
| MS.gene022737.t1 | AT5G17000 | 72.222 | 342 | 91 | 3 | 6 | 344 | 5 | 345 | 0.0 | 512 |
| MS.gene022737.t1 | AT3G03080 | 71.387 | 346 | 94 | 3 | 2 | 344 | 7 | 350 | 0.0 | 504 |
| MS.gene022737.t1 | AT1G26320 | 70.930 | 344 | 96 | 3 | 4 | 344 | 9 | 351 | 7.51e-178 | 497 |
| MS.gene022737.t1 | AT1G26320 | 69.767 | 344 | 95 | 4 | 4 | 344 | 9 | 346 | 2.25e-173 | 485 |
| MS.gene022737.t1 | AT5G37980 | 67.049 | 349 | 108 | 4 | 1 | 344 | 7 | 353 | 1.74e-172 | 483 |
| MS.gene022737.t1 | AT5G37940 | 66.764 | 343 | 109 | 3 | 6 | 344 | 12 | 353 | 2.70e-170 | 478 |
| MS.gene022737.t1 | AT5G16960 | 66.667 | 345 | 111 | 3 | 1 | 342 | 1 | 344 | 9.63e-170 | 476 |
| MS.gene022737.t1 | AT5G16960 | 66.667 | 345 | 111 | 3 | 1 | 342 | 1 | 344 | 9.63e-170 | 476 |
| MS.gene022737.t1 | AT5G38000 | 64.655 | 348 | 116 | 4 | 1 | 343 | 7 | 352 | 7.02e-166 | 466 |
| MS.gene022737.t1 | AT5G38000 | 63.557 | 343 | 115 | 5 | 1 | 335 | 7 | 347 | 3.17e-159 | 449 |
| MS.gene022737.t1 | AT3G59845 | 63.953 | 344 | 117 | 5 | 4 | 342 | 5 | 346 | 6.49e-153 | 433 |
| MS.gene022737.t1 | AT5G38000 | 61.808 | 343 | 105 | 5 | 6 | 343 | 12 | 333 | 2.91e-150 | 426 |
| MS.gene022737.t1 | AT5G16980 | 59.884 | 344 | 99 | 3 | 1 | 344 | 1 | 305 | 1.02e-141 | 404 |
| MS.gene022737.t1 | AT1G65560 | 58.213 | 347 | 136 | 6 | 4 | 344 | 7 | 350 | 1.37e-136 | 392 |
| MS.gene022737.t1 | AT5G16980 | 77.826 | 230 | 51 | 0 | 115 | 344 | 10 | 239 | 9.66e-131 | 373 |
| MS.gene022737.t1 | AT5G16980 | 77.826 | 230 | 51 | 0 | 115 | 344 | 10 | 239 | 9.66e-131 | 373 |
| MS.gene022737.t1 | AT3G59845 | 70.204 | 245 | 71 | 2 | 99 | 342 | 1 | 244 | 8.96e-120 | 345 |
| MS.gene022737.t1 | AT1G65560 | 59.926 | 272 | 103 | 3 | 78 | 344 | 4 | 274 | 2.19e-112 | 328 |
| MS.gene022737.t1 | AT5G17000 | 70.968 | 217 | 59 | 3 | 6 | 219 | 5 | 220 | 1.46e-109 | 320 |
| MS.gene022737.t1 | AT1G49670 | 35.407 | 209 | 127 | 5 | 139 | 341 | 412 | 618 | 8.36e-26 | 108 |
| MS.gene022737.t1 | AT1G49670 | 35.500 | 200 | 121 | 5 | 148 | 341 | 444 | 641 | 1.47e-24 | 105 |
| MS.gene022737.t1 | AT5G37960 | 53.333 | 75 | 35 | 0 | 265 | 339 | 27 | 101 | 1.49e-18 | 80.5 |
Find 77 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTCTTCTTTGTAGTTAA+TGG | 0.122574 | 8.3:-78596329 | None:intergenic |
| GATCTGTTGAAGAATAAATT+TGG | 0.232879 | 8.3:+78596295 | MS.gene022737:CDS |
| GCTAAATTTGTTACACCTTC+AGG | 0.250338 | 8.3:-78596632 | None:intergenic |
| AACCGTGTAATTTAGCAAAT+TGG | 0.254826 | 8.3:-78595841 | None:intergenic |
| CCAGGAATGACTGCTTATTC+TGG | 0.269026 | 8.3:+78595737 | MS.gene022737:CDS |
| TCCTACTATACCGGAATTCT+TGG | 0.285172 | 8.3:+78595148 | MS.gene022737:CDS |
| AAGTAAACGTCAATGCCTTC+TGG | 0.294778 | 8.3:-78596506 | None:intergenic |
| CGTGGATTGATAGAAGCTTT+TGG | 0.308109 | 8.3:-78594308 | None:intergenic |
| AATATGCCAACCAAGGCTTC+AGG | 0.325576 | 8.3:-78596806 | None:intergenic |
| TTTAACCAAAACAACATCAT+TGG | 0.334344 | 8.3:-78594237 | None:intergenic |
| ACAACATCATTGGAACCTTC+TGG | 0.339886 | 8.3:-78594227 | None:intergenic |
| TTGTAATTGCAGCCGATAAC+TGG | 0.344517 | 8.3:+78594980 | MS.gene022737:intron |
| ATGTTGAGGTCTGATTCTTT+AGG | 0.350907 | 8.3:-78594176 | None:intergenic |
| AGGTTCCAATGATGTTGTTT+TGG | 0.355569 | 8.3:+78594232 | MS.gene022737:CDS |
| TCATCTATACGGCAAATTCT+TGG | 0.362488 | 8.3:+78596709 | MS.gene022737:CDS |
| ATCTGGACACAAAGATTATA+AGG | 0.364976 | 8.3:+78595027 | MS.gene022737:CDS |
| TACACACCATAACCAGTTAT+CGG | 0.367570 | 8.3:-78594992 | None:intergenic |
| CTTCTGAAACATTATGTGTC+TGG | 0.371901 | 8.3:+78594149 | MS.gene022737:CDS |
| AAAACATTCTCTCCTTTCTT+GGG | 0.385342 | 8.3:-78595779 | None:intergenic |
| CCAGAATAAGCAGTCATTCC+TGG | 0.390460 | 8.3:-78595737 | None:intergenic |
| TTATGGTGTGTATAAAGTTC+TGG | 0.392308 | 8.3:+78595003 | MS.gene022737:CDS |
| GTGTATAAAGTTCTGGAATC+TGG | 0.392680 | 8.3:+78595010 | MS.gene022737:CDS |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.395943 | 8.3:+78595818 | MS.gene022737:CDS |
| TAGCACATATCATATATAAT+CGG | 0.397092 | 8.3:+78596651 | MS.gene022737:CDS |
| GTTGATTACTATCATCTATA+CGG | 0.398365 | 8.3:+78596698 | MS.gene022737:CDS |
| TATTCTGGTTTCTTTGAAGT+AGG | 0.414955 | 8.3:+78595752 | MS.gene022737:CDS |
| TGAATACATACCAAGAATTC+CGG | 0.416656 | 8.3:-78595158 | None:intergenic |
| GCCTTGGTTGGCATATTTAG+TGG | 0.427792 | 8.3:+78596812 | MS.gene022737:CDS |
| AGAAGGGAAGGTTGTGTATG+TGG | 0.430397 | 8.3:+78596754 | MS.gene022737:CDS |
| TGCTATGTTGTTGGAAGCGC+TGG | 0.439478 | 8.3:+78595863 | MS.gene022737:CDS |
| AGCCATAAACTTACAGATTG+AGG | 0.442715 | 8.3:-78594341 | None:intergenic |
| TTGCAGCCGATAACTGGTTA+TGG | 0.462292 | 8.3:+78594986 | MS.gene022737:intron |
| ATATGCCAACCAAGGCTTCA+GGG | 0.469173 | 8.3:-78596805 | None:intergenic |
| CTCATAAGAGTCCTCATGTA+AGG | 0.474115 | 8.3:-78594281 | None:intergenic |
| GTTCCTCTTTCCTACTATAC+CGG | 0.475688 | 8.3:+78595139 | MS.gene022737:CDS |
| TGAGAAAGGCCCTGAAGCCT+TGG | 0.477909 | 8.3:+78596796 | MS.gene022737:CDS |
| ACCTCAATGCAGCATTGAAA+AGG | 0.490541 | 8.3:+78596353 | MS.gene022737:CDS |
| TTACACGGTTGCTATGTTGT+TGG | 0.490815 | 8.3:+78595854 | MS.gene022737:CDS |
| ACCAAGAATTCCGGTATAGT+AGG | 0.493636 | 8.3:-78595149 | None:intergenic |
| TCAGCTGCTTCAGGTGCAGT+TGG | 0.494200 | 8.3:+78595806 | MS.gene022737:CDS |
| TTGAAATGTATGTGTGCTGC+AGG | 0.501684 | 8.3:-78595100 | None:intergenic |
| TCTTTGAGCGCAGGTATGCC+AGG | 0.502255 | 8.3:+78595719 | MS.gene022737:intron |
| ACCTTCCCTTCTCTGATATG+AGG | 0.504227 | 8.3:-78596743 | None:intergenic |
| TAAGGAAGGTGATATAGTGT+GGG | 0.522542 | 8.3:+78595045 | MS.gene022737:CDS |
| TAGTCTCATGTTCAAGAGTA+CGG | 0.523048 | 8.3:-78596558 | None:intergenic |
| TCCCTTCTCTGATATGAGGC+AGG | 0.531966 | 8.3:-78596739 | None:intergenic |
| ATAAGGAAGGTGATATAGTG+TGG | 0.533080 | 8.3:+78595044 | MS.gene022737:CDS |
| TTCTGGAATCTTAAGAGTAA+TGG | 0.534462 | 8.3:-78594210 | None:intergenic |
| GAAGTAGGCTCTCCCAAGAA+AGG | 0.539338 | 8.3:+78595767 | MS.gene022737:CDS |
| ATAGCTGAGGGTCTTGAGAA+AGG | 0.540813 | 8.3:+78596782 | MS.gene022737:CDS |
| CTCTTGAACATGAGACTACA+TGG | 0.547982 | 8.3:+78596563 | MS.gene022737:CDS |
| ACTTACAGATTGAGGAACAT+AGG | 0.548541 | 8.3:-78594333 | None:intergenic |
| TATAATCGGATTCGTTTGCA+AGG | 0.553002 | 8.3:+78596665 | MS.gene022737:CDS |
| GTTTACTTTGAGAACGTTGG+AGG | 0.568105 | 8.3:+78596521 | MS.gene022737:CDS |
| GCCTCATATCAGAGAAGGGA+AGG | 0.568385 | 8.3:+78596742 | MS.gene022737:CDS |
| ATTACTCTTAAGATTCCAGA+AGG | 0.569583 | 8.3:+78594212 | MS.gene022737:CDS |
| GGACACAAAGATTATAAGGA+AGG | 0.571830 | 8.3:+78595031 | MS.gene022737:CDS |
| AAAGGCCCTGAAGCCTTGGT+TGG | 0.572741 | 8.3:+78596800 | MS.gene022737:CDS |
| ATTCCGGTATAGTAGGAAAG+AGG | 0.577102 | 8.3:-78595142 | None:intergenic |
| ACCACTAAATATGCCAACCA+AGG | 0.577357 | 8.3:-78596813 | None:intergenic |
| GTCCTGCCTCATATCAGAGA+AGG | 0.579424 | 8.3:+78596737 | MS.gene022737:CDS |
| GACGTTTACTTTGAGAACGT+TGG | 0.592728 | 8.3:+78596518 | MS.gene022737:CDS |
| GGCCAATTTGCTAAATTACA+CGG | 0.603555 | 8.3:+78595839 | MS.gene022737:CDS |
| AAGGAAGGTGATATAGTGTG+GGG | 0.603651 | 8.3:+78595046 | MS.gene022737:CDS |
| TCCTGCCTCATATCAGAGAA+GGG | 0.611678 | 8.3:+78596738 | MS.gene022737:CDS |
| TAAATCAGGCACTTTCCAGA+AGG | 0.621084 | 8.3:+78596491 | MS.gene022737:intron |
| TGGTACTGTCAACAATGTTG+AGG | 0.627893 | 8.3:-78594190 | None:intergenic |
| TACAATCTTACTCAACCTGA+AGG | 0.650544 | 8.3:+78596617 | MS.gene022737:CDS |
| AGGAAGGTGATATAGTGTGG+GGG | 0.659217 | 8.3:+78595047 | MS.gene022737:CDS |
| TGTCTTGTGATCCTTACATG+AGG | 0.664048 | 8.3:+78594270 | MS.gene022737:CDS |
| CATGGTCGCATACCTGTGTG+TGG | 0.677659 | 8.3:+78596581 | MS.gene022737:CDS |
| AAGCGCTGGAAGTAAAGAGA+AGG | 0.678662 | 8.3:+78595877 | MS.gene022737:CDS |
| TGTGAGATCATTCCACACAC+AGG | 0.692179 | 8.3:-78596593 | None:intergenic |
| TGAAATGTATGTGTGCTGCA+GGG | 0.693775 | 8.3:-78595099 | None:intergenic |
| GATTGAGGAACATAGGCACG+TGG | 0.744035 | 8.3:-78594326 | None:intergenic |
| GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:+78596769 | MS.gene022737:CDS |
| TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:+78596770 | MS.gene022737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATAATTATTATTTT+TGG | + | chr8.3:78594734-78594753 | MS.gene022737:intron | 0.0% |
| !!! | TGAAATTTTGTAATAAAATT+AGG | - | chr8.3:78596119-78596138 | None:intergenic | 10.0% |
| !! | AACCAAATATTAATGAATAA+AGG | - | chr8.3:78595398-78595417 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTCTACTTTA+AGG | - | chr8.3:78594397-78594416 | None:intergenic | 15.0% |
| !! | ATCCTTTATTCATTAATATT+TGG | + | chr8.3:78595393-78595412 | MS.gene022737:intron | 15.0% |
| !! | TAAATGAAAAGAAACAAAAA+TGG | - | chr8.3:78596223-78596242 | None:intergenic | 15.0% |
| !! | TTATTACAAAATTTCAATTC+TGG | + | chr8.3:78596123-78596142 | MS.gene022737:intron | 15.0% |
| !! | TTTATTCATTAATATTTGGT+TGG | + | chr8.3:78595397-78595416 | MS.gene022737:intron | 15.0% |
| !!! | AATAATAATTTGCTAAGAAA+TGG | - | chr8.3:78594490-78594509 | None:intergenic | 15.0% |
| !!! | AGAGTTTTTTATATGTAAAT+TGG | + | chr8.3:78594403-78594422 | MS.gene022737:intron | 15.0% |
| !!! | TAATCTCAACAAAATTTTAT+AGG | - | chr8.3:78594770-78594789 | None:intergenic | 15.0% |
| !!! | TCTTAGCAAATTATTATTTT+TGG | + | chr8.3:78594492-78594511 | MS.gene022737:intron | 15.0% |
| !! | AAAAACACAATATGTCAAAA+AGG | - | chr8.3:78595700-78595719 | None:intergenic | 20.0% |
| !! | AAATGGAAAACTATTAACAT+AGG | - | chr8.3:78595335-78595354 | None:intergenic | 20.0% |
| !! | ATATTTAGTGGTAAAAATGT+TGG | + | chr8.3:78596824-78596843 | MS.gene022737:CDS | 20.0% |
| !! | CAAAAGACATATTTAAGTAA+AGG | - | chr8.3:78596265-78596284 | None:intergenic | 20.0% |
| !! | TAGCACATATCATATATAAT+CGG | + | chr8.3:78596651-78596670 | MS.gene022737:CDS | 20.0% |
| !!! | CACTTTATTATGTTGATTTA+TGG | + | chr8.3:78595188-78595207 | MS.gene022737:intron | 20.0% |
| !!! | TATTTTTGTTGAGAATTTGA+AGG | + | chr8.3:78594790-78594809 | MS.gene022737:intron | 20.0% |
| ! | AAGTACTTTCGTAATATAAC+TGG | - | chr8.3:78596070-78596089 | None:intergenic | 25.0% |
| ! | AATTTGACAAATACTGAGAA+GGG | - | chr8.3:78594371-78594390 | None:intergenic | 25.0% |
| ! | ATCAGTTCCAAATAACTATA+AGG | - | chr8.3:78595460-78595479 | None:intergenic | 25.0% |
| ! | CATTGATAAAGAGAAGAAAA+TGG | - | chr8.3:78595352-78595371 | None:intergenic | 25.0% |
| ! | GATATCAATTTGTGTAAATC+AGG | + | chr8.3:78596477-78596496 | MS.gene022737:intron | 25.0% |
| ! | GATCTGTTGAAGAATAAATT+TGG | + | chr8.3:78596295-78596314 | MS.gene022737:CDS | 25.0% |
| ! | GTTGATTACTATCATCTATA+CGG | + | chr8.3:78596698-78596717 | MS.gene022737:CDS | 25.0% |
| ! | TAATTTGACAAATACTGAGA+AGG | - | chr8.3:78594372-78594391 | None:intergenic | 25.0% |
| ! | TTCAGACTTTAATTATCTCT+TGG | - | chr8.3:78594585-78594604 | None:intergenic | 25.0% |
| ! | TTTAACCAAAACAACATCAT+TGG | - | chr8.3:78594240-78594259 | None:intergenic | 25.0% |
| ! | TTTCAGTTTCATTTGAAAGT+CGG | + | chr8.3:78594887-78594906 | MS.gene022737:intron | 25.0% |
| !! | AAATTGGTCTCTTCATTATA+TGG | + | chr8.3:78594419-78594438 | MS.gene022737:intron | 25.0% |
| !! | AATTGGTCTCTTCATTATAT+GGG | + | chr8.3:78594420-78594439 | MS.gene022737:intron | 25.0% |
| !! | AATTTCAATTCTGGAAGAAA+TGG | + | chr8.3:78596132-78596151 | MS.gene022737:intron | 25.0% |
| !! | TTCTCTGTATAATCTTTTCT+CGG | + | chr8.3:78595514-78595533 | MS.gene022737:intron | 25.0% |
| !!! | TAATTTGTTGTTTTAACCCT+CGG | + | chr8.3:78594519-78594538 | MS.gene022737:intron | 25.0% |
| AAAAACATTCTCTCCTTTCT+TGG | - | chr8.3:78595783-78595802 | None:intergenic | 30.0% | |
| AAAACATTCTCTCCTTTCTT+GGG | - | chr8.3:78595782-78595801 | None:intergenic | 30.0% | |
| AACCGTGTAATTTAGCAAAT+TGG | - | chr8.3:78595844-78595863 | None:intergenic | 30.0% | |
| AAGAAACAAAAATGGATCTC+AGG | - | chr8.3:78596215-78596234 | None:intergenic | 30.0% | |
| AATTATTCACCAAAGTCATC+AGG | - | chr8.3:78594644-78594663 | None:intergenic | 30.0% | |
| AGAAACAAAAATGGATCTCA+GGG | - | chr8.3:78596214-78596233 | None:intergenic | 30.0% | |
| AGAAGATTCATCATTTATGC+AGG | - | chr8.3:78595932-78595951 | None:intergenic | 30.0% | |
| ATAACACAAACTACACATCA+AGG | - | chr8.3:78594862-78594881 | None:intergenic | 30.0% | |
| ATCTGGACACAAAGATTATA+AGG | + | chr8.3:78595027-78595046 | MS.gene022737:CDS | 30.0% | |
| ATTACTCTTAAGATTCCAGA+AGG | + | chr8.3:78594212-78594231 | MS.gene022737:CDS | 30.0% | |
| GTTCTAGTCAGATACAAATT+CGG | + | chr8.3:78594613-78594632 | MS.gene022737:intron | 30.0% | |
| TAACACAAACTACACATCAA+GGG | - | chr8.3:78594861-78594880 | None:intergenic | 30.0% | |
| TAGAACATAAAACTGCACAT+AGG | - | chr8.3:78595551-78595570 | None:intergenic | 30.0% | |
| TGAATACATACCAAGAATTC+CGG | - | chr8.3:78595161-78595180 | None:intergenic | 30.0% | |
| TGTCTTAGTAATTCGCAATT+CGG | + | chr8.3:78594556-78594575 | MS.gene022737:intron | 30.0% | |
| TTACACAAATTGATATCCAC+CGG | - | chr8.3:78596474-78596493 | None:intergenic | 30.0% | |
| TTATGGTGTGTATAAAGTTC+TGG | + | chr8.3:78595003-78595022 | MS.gene022737:CDS | 30.0% | |
| TTCAGTTTCATTTGAAAGTC+GGG | + | chr8.3:78594888-78594907 | MS.gene022737:intron | 30.0% | |
| TTCATTAATATTTGGTTGGC+TGG | + | chr8.3:78595401-78595420 | MS.gene022737:intron | 30.0% | |
| TTCCTCAATCTGTAAGTTTA+TGG | + | chr8.3:78594339-78594358 | MS.gene022737:intron | 30.0% | |
| TTGCTCTTCTTTGTAGTTAA+TGG | - | chr8.3:78596332-78596351 | None:intergenic | 30.0% | |
| ! | AAACCAGCCTTATAGTTATT+TGG | + | chr8.3:78595450-78595469 | MS.gene022737:intron | 30.0% |
| ! | AAGGAAGATAGTAATTTTGC+TGG | - | chr8.3:78596246-78596265 | None:intergenic | 30.0% |
| ! | CGGGGATAAAGAAATATTTT+TGG | + | chr8.3:78594672-78594691 | MS.gene022737:intron | 30.0% |
| ! | TAAATATGTCTTTTGCAACC+AGG | + | chr8.3:78596270-78596289 | MS.gene022737:intron | 30.0% |
| ! | TGATGTGTAGTTTGTGTTAT+TGG | + | chr8.3:78594862-78594881 | MS.gene022737:intron | 30.0% |
| ! | TGGTGAATAATTTGTGTCTA+CGG | + | chr8.3:78594652-78594671 | MS.gene022737:intron | 30.0% |
| !! | CTATAAGGCTGGTTTAATAT+TGG | - | chr8.3:78595445-78595464 | None:intergenic | 30.0% |
| !! | TATTCTGGTTTCTTTGAAGT+AGG | + | chr8.3:78595752-78595771 | MS.gene022737:CDS | 30.0% |
| !! | TGGGTCAATTTGTTATTAGT+AGG | + | chr8.3:78594439-78594458 | MS.gene022737:intron | 30.0% |
| !! | TTCTGGAATCTTAAGAGTAA+TGG | - | chr8.3:78594213-78594232 | None:intergenic | 30.0% |
| !!! | AATTTGTTGTTTTAACCCTC+GGG | + | chr8.3:78594520-78594539 | MS.gene022737:intron | 30.0% |
| ACTTACAGATTGAGGAACAT+AGG | - | chr8.3:78594336-78594355 | None:intergenic | 35.0% | |
| AGCCATAAACTTACAGATTG+AGG | - | chr8.3:78594344-78594363 | None:intergenic | 35.0% | |
| ATAAGGAAGGTGATATAGTG+TGG | + | chr8.3:78595044-78595063 | MS.gene022737:CDS | 35.0% | |
| ATGTTGAGGTCTGATTCTTT+AGG | - | chr8.3:78594179-78594198 | None:intergenic | 35.0% | |
| GAAACAAAAATGGATCTCAG+GGG | - | chr8.3:78596213-78596232 | None:intergenic | 35.0% | |
| GATAGAGTTGTTTGGATATC+TGG | + | chr8.3:78595300-78595319 | MS.gene022737:intron | 35.0% | |
| GGACACAAAGATTATAAGGA+AGG | + | chr8.3:78595031-78595050 | MS.gene022737:CDS | 35.0% | |
| GTTCCAAATAACTATAAGGC+TGG | - | chr8.3:78595456-78595475 | None:intergenic | 35.0% | |
| TAAGGAAGGTGATATAGTGT+GGG | + | chr8.3:78595045-78595064 | MS.gene022737:CDS | 35.0% | |
| TACAATCTTACTCAACCTGA+AGG | + | chr8.3:78596617-78596636 | MS.gene022737:CDS | 35.0% | |
| TACACACCATAACCAGTTAT+CGG | - | chr8.3:78594995-78595014 | None:intergenic | 35.0% | |
| TAGTCTCATGTTCAAGAGTA+CGG | - | chr8.3:78596561-78596580 | None:intergenic | 35.0% | |
| TATAATCGGATTCGTTTGCA+AGG | + | chr8.3:78596665-78596684 | MS.gene022737:CDS | 35.0% | |
| TCATCTATACGGCAAATTCT+TGG | + | chr8.3:78596709-78596728 | MS.gene022737:CDS | 35.0% | |
| TGTTGTGTGATAGAGTTGTT+TGG | + | chr8.3:78595292-78595311 | MS.gene022737:intron | 35.0% | |
| ! | CATGTAGTTTTCTTCCATTC+TGG | + | chr8.3:78595668-78595687 | MS.gene022737:intron | 35.0% |
| ! | GGTCAGTTTATACAGTTTTG+CGG | + | chr8.3:78596374-78596393 | MS.gene022737:intron | 35.0% |
| ! | GGTGAATAATTTGTGTCTAC+GGG | + | chr8.3:78594653-78594672 | MS.gene022737:intron | 35.0% |
| ! | GTCAGTTTATACAGTTTTGC+GGG | + | chr8.3:78596375-78596394 | MS.gene022737:intron | 35.0% |
| ! | GTGAATAATTTGTGTCTACG+GGG | + | chr8.3:78594654-78594673 | MS.gene022737:intron | 35.0% |
| !! | AGGTTCCAATGATGTTGTTT+TGG | + | chr8.3:78594232-78594251 | MS.gene022737:CDS | 35.0% |
| !! | CTTCTGAAACATTATGTGTC+TGG | + | chr8.3:78594149-78594168 | MS.gene022737:CDS | 35.0% |
| !! | GCTAAATTTGTTACACCTTC+AGG | - | chr8.3:78596635-78596654 | None:intergenic | 35.0% |
| !! | GGCCAATTTGCTAAATTACA+CGG | + | chr8.3:78595839-78595858 | MS.gene022737:CDS | 35.0% |
| !! | GTGGATTGATAGAAGCTTTT+GGG | - | chr8.3:78594310-78594329 | None:intergenic | 35.0% |
| !! | GTGTATAAAGTTCTGGAATC+TGG | + | chr8.3:78595010-78595029 | MS.gene022737:CDS | 35.0% |
| AAGGAAGGTGATATAGTGTG+GGG | + | chr8.3:78595046-78595065 | MS.gene022737:CDS | 40.0% | |
| AAGTAAACGTCAATGCCTTC+TGG | - | chr8.3:78596509-78596528 | None:intergenic | 40.0% | |
| ACAACATCATTGGAACCTTC+TGG | - | chr8.3:78594230-78594249 | None:intergenic | 40.0% | |
| ACCAAGAATTCCGGTATAGT+AGG | - | chr8.3:78595152-78595171 | None:intergenic | 40.0% | |
| ACCACTAAATATGCCAACCA+AGG | - | chr8.3:78596816-78596835 | None:intergenic | 40.0% | |
| ATTCCGGTATAGTAGGAAAG+AGG | - | chr8.3:78595145-78595164 | None:intergenic | 40.0% | |
| CCCAAACATTAAGATTAGCG+CGG | - | chr8.3:78596175-78596194 | None:intergenic | 40.0% | |
| CCGCGCTAATCTTAATGTTT+GGG | + | chr8.3:78596172-78596191 | MS.gene022737:intron | 40.0% | |
| CTCATAAGAGTCCTCATGTA+AGG | - | chr8.3:78594284-78594303 | None:intergenic | 40.0% | |
| CTCTTGAACATGAGACTACA+TGG | + | chr8.3:78596563-78596582 | MS.gene022737:CDS | 40.0% | |
| GCTACACAGTTCAAAACAGT+AGG | - | chr8.3:78595967-78595986 | None:intergenic | 40.0% | |
| GTTCCTCTTTCCTACTATAC+CGG | + | chr8.3:78595139-78595158 | MS.gene022737:CDS | 40.0% | |
| TAAATCAGGCACTTTCCAGA+AGG | + | chr8.3:78596491-78596510 | MS.gene022737:intron | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | + | chr8.3:78596770-78596789 | MS.gene022737:CDS | 40.0% | |
| TATTCTTCAACAGATCCACC+TGG | - | chr8.3:78596291-78596310 | None:intergenic | 40.0% | |
| TCCTACTATACCGGAATTCT+TGG | + | chr8.3:78595148-78595167 | MS.gene022737:CDS | 40.0% | |
| TGAAATGTATGTGTGCTGCA+GGG | - | chr8.3:78595102-78595121 | None:intergenic | 40.0% | |
| TGGTACTGTCAACAATGTTG+AGG | - | chr8.3:78594193-78594212 | None:intergenic | 40.0% | |
| TGTCTTGTGATCCTTACATG+AGG | + | chr8.3:78594270-78594289 | MS.gene022737:CDS | 40.0% | |
| TGTTTGGATATCTGGCTGTT+TGG | + | chr8.3:78595308-78595327 | MS.gene022737:intron | 40.0% | |
| TTACACGGTTGCTATGTTGT+TGG | + | chr8.3:78595854-78595873 | MS.gene022737:CDS | 40.0% | |
| TTGAAATGTATGTGTGCTGC+AGG | - | chr8.3:78595103-78595122 | None:intergenic | 40.0% | |
| TTGTAATTGCAGCCGATAAC+TGG | + | chr8.3:78594980-78594999 | MS.gene022737:intron | 40.0% | |
| ! | ACCTCAATGCAGCATTGAAA+AGG | + | chr8.3:78596353-78596372 | MS.gene022737:CDS | 40.0% |
| ! | ACCTTTTCAATGCTGCATTG+AGG | - | chr8.3:78596357-78596376 | None:intergenic | 40.0% |
| ! | ATATGTCTTTTGCAACCAGG+TGG | + | chr8.3:78596273-78596292 | MS.gene022737:intron | 40.0% |
| ! | GACGTTTACTTTGAGAACGT+TGG | + | chr8.3:78596518-78596537 | MS.gene022737:CDS | 40.0% |
| ! | GCATCTACACTTTTGATCGA+AGG | + | chr8.3:78595985-78596004 | MS.gene022737:intron | 40.0% |
| ! | GTTTACTTTGAGAACGTTGG+AGG | + | chr8.3:78596521-78596540 | MS.gene022737:CDS | 40.0% |
| ! | TGAGAATTTGAAGGAAGTGC+TGG | + | chr8.3:78594799-78594818 | MS.gene022737:intron | 40.0% |
| ! | TTGTGTTTTTCTTTGAGCGC+AGG | + | chr8.3:78595710-78595729 | MS.gene022737:intron | 40.0% |
| !! | AATATTTGGTTGGCTGGCTT+TGG | + | chr8.3:78595407-78595426 | MS.gene022737:intron | 40.0% |
| !! | CGTGGATTGATAGAAGCTTT+TGG | - | chr8.3:78594311-78594330 | None:intergenic | 40.0% |
| !! | GTTTTTGTTTCAGCTGCTTC+AGG | + | chr8.3:78595797-78595816 | MS.gene022737:CDS | 40.0% |
| AATATGCCAACCAAGGCTTC+AGG | - | chr8.3:78596809-78596828 | None:intergenic | 45.0% | |
| ACACGAGACACTCAACTAAC+CGG | + | chr8.3:78596452-78596471 | MS.gene022737:intron | 45.0% | |
| ACCTTCCCTTCTCTGATATG+AGG | - | chr8.3:78596746-78596765 | None:intergenic | 45.0% | |
| AGAAGGGAAGGTTGTGTATG+TGG | + | chr8.3:78596754-78596773 | MS.gene022737:CDS | 45.0% | |
| AGGAAGGTGATATAGTGTGG+GGG | + | chr8.3:78595047-78595066 | MS.gene022737:CDS | 45.0% | |
| AGTGTGGGGGATAACGAATT+GGG | + | chr8.3:78595060-78595079 | MS.gene022737:CDS | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+AGG | + | chr8.3:78596782-78596801 | MS.gene022737:CDS | 45.0% | |
| ATATGCCAACCAAGGCTTCA+GGG | - | chr8.3:78596808-78596827 | None:intergenic | 45.0% | |
| CCAGAATAAGCAGTCATTCC+TGG | - | chr8.3:78595740-78595759 | None:intergenic | 45.0% | |
| CCAGGAATGACTGCTTATTC+TGG | + | chr8.3:78595737-78595756 | MS.gene022737:CDS | 45.0% | |
| GCCGCGCTAATCTTAATGTT+TGG | + | chr8.3:78596171-78596190 | MS.gene022737:intron | 45.0% | |
| GCCTTGGTTGGCATATTTAG+TGG | + | chr8.3:78596812-78596831 | MS.gene022737:CDS | 45.0% | |
| GTATGTGGAAGACATAGCTG+AGG | + | chr8.3:78596769-78596788 | MS.gene022737:CDS | 45.0% | |
| TAGTGTGGGGGATAACGAAT+TGG | + | chr8.3:78595059-78595078 | MS.gene022737:CDS | 45.0% | |
| TCCTGCCTCATATCAGAGAA+GGG | + | chr8.3:78596738-78596757 | MS.gene022737:CDS | 45.0% | |
| TCGGATTCTCCTGATGACTT+TGG | + | chr8.3:78594632-78594651 | MS.gene022737:intron | 45.0% | |
| TGCTTGCATGCTAGATGCTT+AGG | - | chr8.3:78595609-78595628 | None:intergenic | 45.0% | |
| TGTGAGATCATTCCACACAC+AGG | - | chr8.3:78596596-78596615 | None:intergenic | 45.0% | |
| TTACTAAGACACCTTCCTCC+AGG | - | chr8.3:78594547-78594566 | None:intergenic | 45.0% | |
| TTGCAGCCGATAACTGGTTA+TGG | + | chr8.3:78594986-78595005 | MS.gene022737:intron | 45.0% | |
| ! | CAAAAAGGCACACACCAGAA+TGG | - | chr8.3:78595685-78595704 | None:intergenic | 45.0% |
| !! | AAGCGCTGGAAGTAAAGAGA+AGG | + | chr8.3:78595877-78595896 | MS.gene022737:CDS | 45.0% |
| !! | AAGTGCTGGATACTGGGATA+TGG | + | chr8.3:78594813-78594832 | MS.gene022737:intron | 45.0% |
| !! | TGAAGGAAGTGCTGGATACT+GGG | + | chr8.3:78594807-78594826 | MS.gene022737:intron | 45.0% |
| !! | TTGAAGGAAGTGCTGGATAC+TGG | + | chr8.3:78594806-78594825 | MS.gene022737:intron | 45.0% |
| ATTAGCGCGGCTCTTCAGTT+TGG | - | chr8.3:78596162-78596181 | None:intergenic | 50.0% | |
| GAAGTAGGCTCTCCCAAGAA+AGG | + | chr8.3:78595767-78595786 | MS.gene022737:CDS | 50.0% | |
| GATTGAGGAACATAGGCACG+TGG | - | chr8.3:78594329-78594348 | None:intergenic | 50.0% | |
| GCCTCATATCAGAGAAGGGA+AGG | + | chr8.3:78596742-78596761 | MS.gene022737:CDS | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr8.3:78595818-78595837 | MS.gene022737:CDS | 50.0% | |
| GTCCTGCCTCATATCAGAGA+AGG | + | chr8.3:78596737-78596756 | MS.gene022737:CDS | 50.0% | |
| TCCCTTCTCTGATATGAGGC+AGG | - | chr8.3:78596742-78596761 | None:intergenic | 50.0% | |
| ! | TGCTATGTTGTTGGAAGCGC+TGG | + | chr8.3:78595863-78595882 | MS.gene022737:CDS | 50.0% |
| !! | GTTGGCTGGCTTTGGTTTGA+AGG | + | chr8.3:78595415-78595434 | MS.gene022737:intron | 50.0% |
| !!! | TTGTTTTAACCCTCGGGTCC+TGG | + | chr8.3:78594526-78594545 | MS.gene022737:intron | 50.0% |
| AAAGGCCCTGAAGCCTTGGT+TGG | + | chr8.3:78596800-78596819 | MS.gene022737:CDS | 55.0% | |
| CATGGTCGCATACCTGTGTG+TGG | + | chr8.3:78596581-78596600 | MS.gene022737:CDS | 55.0% | |
| CGAGACACTCAACTAACCGG+TGG | + | chr8.3:78596455-78596474 | MS.gene022737:intron | 55.0% | |
| TCAGCTGCTTCAGGTGCAGT+TGG | + | chr8.3:78595806-78595825 | MS.gene022737:CDS | 55.0% | |
| TCTTTGAGCGCAGGTATGCC+AGG | + | chr8.3:78595719-78595738 | MS.gene022737:intron | 55.0% | |
| TGAGAAAGGCCCTGAAGCCT+TGG | + | chr8.3:78596796-78596815 | MS.gene022737:CDS | 55.0% | |
| ! | TTTTAACCCTCGGGTCCTGG+AGG | + | chr8.3:78594529-78594548 | MS.gene022737:intron | 55.0% |
| AACCCTCGGGTCCTGGAGGA+AGG | + | chr8.3:78594533-78594552 | MS.gene022737:intron | 65.0% | |
| ACACCTTCCTCCAGGACCCG+AGG | - | chr8.3:78594539-78594558 | None:intergenic | 65.0% | |
| CACCTTCCTCCAGGACCCGA+GGG | - | chr8.3:78594538-78594557 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78594122 | 78596877 | 78594122 | ID=MS.gene022737 |
| chr8.3 | mRNA | 78594122 | 78596877 | 78594122 | ID=MS.gene022737.t1;Parent=MS.gene022737 |
| chr8.3 | exon | 78594122 | 78594349 | 78594122 | ID=MS.gene022737.t1.exon1;Parent=MS.gene022737.t1 |
| chr8.3 | CDS | 78594122 | 78594349 | 78594122 | ID=cds.MS.gene022737.t1;Parent=MS.gene022737.t1 |
| chr8.3 | exon | 78594992 | 78595169 | 78594992 | ID=MS.gene022737.t1.exon2;Parent=MS.gene022737.t1 |
| chr8.3 | CDS | 78594992 | 78595169 | 78594992 | ID=cds.MS.gene022737.t1;Parent=MS.gene022737.t1 |
| chr8.3 | exon | 78595732 | 78595898 | 78595732 | ID=MS.gene022737.t1.exon3;Parent=MS.gene022737.t1 |
| chr8.3 | CDS | 78595732 | 78595898 | 78595732 | ID=cds.MS.gene022737.t1;Parent=MS.gene022737.t1 |
| chr8.3 | exon | 78596292 | 78596374 | 78596292 | ID=MS.gene022737.t1.exon4;Parent=MS.gene022737.t1 |
| chr8.3 | CDS | 78596292 | 78596374 | 78596292 | ID=cds.MS.gene022737.t1;Parent=MS.gene022737.t1 |
| chr8.3 | exon | 78596499 | 78596877 | 78596499 | ID=MS.gene022737.t1.exon5;Parent=MS.gene022737.t1 |
| chr8.3 | CDS | 78596499 | 78596877 | 78596499 | ID=cds.MS.gene022737.t1;Parent=MS.gene022737.t1 |
| Gene Sequence |
| Protein sequence |
