Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020226.t1 | ACJ85436.1 | 94.8 | 344 | 18 | 0 | 1 | 344 | 1 | 344 | 1.00E-189 | 672.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020226.t1 | Q39172 | 72.5 | 342 | 90 | 3 | 6 | 344 | 5 | 345 | 8.5e-145 | 514.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020226.t1 | B7FL02 | 94.8 | 344 | 18 | 0 | 1 | 344 | 1 | 344 | 7.3e-190 | 672.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020226 | MS.gene022738 | PPI |
| MS.gene020226 | MS.gene39326 | PPI |
| MS.gene020226 | MS.gene39313 | PPI |
| MS.gene39315 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene067859 | PPI |
| MS.gene54434 | MS.gene020226 | PPI |
| MS.gene020239 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene022721 | PPI |
| MS.gene020226 | MS.gene022736 | PPI |
| MS.gene08162 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene022737 | PPI |
| MS.gene020033 | MS.gene020226 | PPI |
| MS.gene020225 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene41778 | PPI |
| MS.gene020226 | MS.gene022735 | PPI |
| MS.gene022722 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene45375 | PPI |
| MS.gene042467 | MS.gene020226 | PPI |
| MS.gene020077 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene020227 | PPI |
| MS.gene020226 | MS.gene069341 | PPI |
| MS.gene020228 | MS.gene020226 | PPI |
| MS.gene020076 | MS.gene020226 | PPI |
| MS.gene39327 | MS.gene020226 | PPI |
| MS.gene39312 | MS.gene020226 | PPI |
| MS.gene020226 | MS.gene54433 | PPI |
| MS.gene020226 | MS.gene39314 | PPI |
| MS.gene020226 | MS.gene97874 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020226.t1 | MTR_8g010030 | 86.919 | 344 | 45 | 0 | 1 | 344 | 1 | 344 | 0.0 | 627 |
| MS.gene020226.t1 | MTR_8g010000 | 87.500 | 344 | 18 | 1 | 1 | 344 | 1 | 319 | 0.0 | 612 |
| MS.gene020226.t1 | MTR_8g010020 | 86.919 | 344 | 13 | 1 | 1 | 344 | 1 | 312 | 0.0 | 594 |
| MS.gene020226.t1 | MTR_8g009820 | 83.188 | 345 | 55 | 2 | 1 | 344 | 60 | 402 | 0.0 | 592 |
| MS.gene020226.t1 | MTR_8g009980 | 79.420 | 345 | 69 | 2 | 1 | 344 | 1 | 344 | 0.0 | 573 |
| MS.gene020226.t1 | MTR_8g009840 | 81.121 | 339 | 60 | 3 | 1 | 338 | 1 | 336 | 0.0 | 568 |
| MS.gene020226.t1 | MTR_8g009830 | 79.420 | 345 | 67 | 3 | 1 | 344 | 1 | 342 | 0.0 | 564 |
| MS.gene020226.t1 | MTR_4g082970 | 67.544 | 342 | 109 | 2 | 4 | 344 | 10 | 350 | 6.85e-163 | 459 |
| MS.gene020226.t1 | MTR_7g406860 | 59.420 | 345 | 138 | 2 | 1 | 344 | 3 | 346 | 9.83e-144 | 410 |
| MS.gene020226.t1 | MTR_8g007325 | 80.455 | 220 | 40 | 2 | 1 | 219 | 1 | 218 | 1.45e-127 | 364 |
| MS.gene020226.t1 | MTR_0011s0280 | 45.376 | 346 | 184 | 2 | 3 | 344 | 2 | 346 | 1.29e-110 | 326 |
| MS.gene020226.t1 | MTR_2g088190 | 40.580 | 345 | 196 | 5 | 4 | 341 | 5 | 347 | 3.30e-83 | 256 |
| MS.gene020226.t1 | MTR_2g088220 | 40.816 | 343 | 198 | 4 | 4 | 341 | 6 | 348 | 5.74e-78 | 243 |
| MS.gene020226.t1 | MTR_2g088200 | 38.506 | 348 | 200 | 6 | 4 | 341 | 5 | 348 | 6.04e-72 | 227 |
| MS.gene020226.t1 | MTR_5g095030 | 57.812 | 128 | 54 | 0 | 215 | 342 | 9 | 136 | 2.56e-49 | 162 |
| MS.gene020226.t1 | MTR_4g086410 | 33.333 | 243 | 147 | 6 | 106 | 341 | 388 | 622 | 1.71e-26 | 110 |
| MS.gene020226.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 139 | 341 | 276 | 482 | 1.82e-26 | 109 |
| MS.gene020226.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 139 | 341 | 416 | 622 | 2.47e-26 | 110 |
| MS.gene020226.t1 | MTR_5g095020 | 50.877 | 57 | 27 | 1 | 29 | 85 | 6 | 61 | 3.74e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020226.t1 | AT5G16970 | 72.515 | 342 | 90 | 3 | 6 | 344 | 5 | 345 | 0.0 | 518 |
| MS.gene020226.t1 | AT5G16990 | 73.021 | 341 | 89 | 3 | 6 | 344 | 4 | 343 | 0.0 | 513 |
| MS.gene020226.t1 | AT5G17000 | 72.222 | 342 | 91 | 3 | 6 | 344 | 5 | 345 | 0.0 | 512 |
| MS.gene020226.t1 | AT3G03080 | 71.387 | 346 | 94 | 3 | 2 | 344 | 7 | 350 | 0.0 | 504 |
| MS.gene020226.t1 | AT1G26320 | 70.930 | 344 | 96 | 3 | 4 | 344 | 9 | 351 | 7.51e-178 | 497 |
| MS.gene020226.t1 | AT1G26320 | 69.767 | 344 | 95 | 4 | 4 | 344 | 9 | 346 | 2.25e-173 | 485 |
| MS.gene020226.t1 | AT5G37980 | 67.049 | 349 | 108 | 4 | 1 | 344 | 7 | 353 | 1.74e-172 | 483 |
| MS.gene020226.t1 | AT5G37940 | 66.764 | 343 | 109 | 3 | 6 | 344 | 12 | 353 | 2.70e-170 | 478 |
| MS.gene020226.t1 | AT5G16960 | 66.667 | 345 | 111 | 3 | 1 | 342 | 1 | 344 | 9.63e-170 | 476 |
| MS.gene020226.t1 | AT5G16960 | 66.667 | 345 | 111 | 3 | 1 | 342 | 1 | 344 | 9.63e-170 | 476 |
| MS.gene020226.t1 | AT5G38000 | 64.655 | 348 | 116 | 4 | 1 | 343 | 7 | 352 | 7.02e-166 | 466 |
| MS.gene020226.t1 | AT5G38000 | 63.557 | 343 | 115 | 5 | 1 | 335 | 7 | 347 | 3.17e-159 | 449 |
| MS.gene020226.t1 | AT3G59845 | 63.953 | 344 | 117 | 5 | 4 | 342 | 5 | 346 | 6.49e-153 | 433 |
| MS.gene020226.t1 | AT5G38000 | 61.808 | 343 | 105 | 5 | 6 | 343 | 12 | 333 | 2.91e-150 | 426 |
| MS.gene020226.t1 | AT5G16980 | 59.884 | 344 | 99 | 3 | 1 | 344 | 1 | 305 | 1.02e-141 | 404 |
| MS.gene020226.t1 | AT1G65560 | 58.213 | 347 | 136 | 6 | 4 | 344 | 7 | 350 | 1.37e-136 | 392 |
| MS.gene020226.t1 | AT5G16980 | 77.826 | 230 | 51 | 0 | 115 | 344 | 10 | 239 | 9.66e-131 | 373 |
| MS.gene020226.t1 | AT5G16980 | 77.826 | 230 | 51 | 0 | 115 | 344 | 10 | 239 | 9.66e-131 | 373 |
| MS.gene020226.t1 | AT3G59845 | 70.204 | 245 | 71 | 2 | 99 | 342 | 1 | 244 | 8.96e-120 | 345 |
| MS.gene020226.t1 | AT1G65560 | 59.926 | 272 | 103 | 3 | 78 | 344 | 4 | 274 | 2.19e-112 | 328 |
| MS.gene020226.t1 | AT5G17000 | 70.968 | 217 | 59 | 3 | 6 | 219 | 5 | 220 | 1.46e-109 | 320 |
| MS.gene020226.t1 | AT1G49670 | 35.407 | 209 | 127 | 5 | 139 | 341 | 412 | 618 | 8.36e-26 | 108 |
| MS.gene020226.t1 | AT1G49670 | 35.500 | 200 | 121 | 5 | 148 | 341 | 444 | 641 | 1.47e-24 | 105 |
| MS.gene020226.t1 | AT5G37960 | 53.333 | 75 | 35 | 0 | 265 | 339 | 27 | 101 | 1.49e-18 | 80.5 |
Find 77 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTCTTCTTTGTAGTTAA+TGG | 0.122574 | 8.3:-78383532 | None:intergenic |
| GATCTGTTGAAGAATAAATT+TGG | 0.232879 | 8.3:+78383498 | MS.gene020226:CDS |
| GCTAAATTTGTTACACCTTC+AGG | 0.250338 | 8.3:-78383835 | None:intergenic |
| AACCGTGTAATTTAGCAAAT+TGG | 0.254826 | 8.3:-78383044 | None:intergenic |
| CCAGGAATGACTGCTTATTC+TGG | 0.269026 | 8.3:+78382940 | MS.gene020226:CDS |
| TCCTACTATACCGGAATTCT+TGG | 0.285172 | 8.3:+78382355 | MS.gene020226:CDS |
| AAGTAAACGTCAATGCCTTC+TGG | 0.294778 | 8.3:-78383709 | None:intergenic |
| CGTGGATTGATAGAAGCTTT+TGG | 0.308109 | 8.3:-78381516 | None:intergenic |
| GTCTATAAAGTTCTGGAATC+TGG | 0.319610 | 8.3:+78382217 | MS.gene020226:CDS |
| AATATGCCAACCAAGGCTTC+AGG | 0.325576 | 8.3:-78384009 | None:intergenic |
| TTTAACCAAAACAACATCAT+TGG | 0.334344 | 8.3:-78381445 | None:intergenic |
| ACAACATCATTGGAACCTTC+TGG | 0.339886 | 8.3:-78381435 | None:intergenic |
| ATGTTGAGGTCTGATTCTTT+AGG | 0.350907 | 8.3:-78381384 | None:intergenic |
| TTGTAACTGCAGCCGATAAC+TGG | 0.355043 | 8.3:+78382187 | MS.gene020226:intron |
| AGGTTCCAATGATGTTGTTT+TGG | 0.355569 | 8.3:+78381440 | MS.gene020226:CDS |
| TCATCTATACGGCAAATTCT+TGG | 0.362488 | 8.3:+78383912 | MS.gene020226:CDS |
| ATCTGGACACAAAGATTATA+AGG | 0.364976 | 8.3:+78382234 | MS.gene020226:CDS |
| CTTCTGAAACATTATGTGTC+TGG | 0.371901 | 8.3:+78381357 | MS.gene020226:CDS |
| TTATGGTGTCTATAAAGTTC+TGG | 0.377426 | 8.3:+78382210 | MS.gene020226:CDS |
| AAAACATTCTCTCCTTTCTT+GGG | 0.385342 | 8.3:-78382982 | None:intergenic |
| TAGACACCATAACCAGTTAT+CGG | 0.385609 | 8.3:-78382199 | None:intergenic |
| CCAGAATAAGCAGTCATTCC+TGG | 0.390460 | 8.3:-78382940 | None:intergenic |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.395943 | 8.3:+78383021 | MS.gene020226:CDS |
| TAGCACATATCATATATAAT+CGG | 0.397092 | 8.3:+78383854 | MS.gene020226:CDS |
| GTTGATTACTATCATCTATA+CGG | 0.398365 | 8.3:+78383901 | MS.gene020226:CDS |
| TATTCTGGTTTCTTTGAAGT+AGG | 0.414955 | 8.3:+78382955 | MS.gene020226:CDS |
| TGAATACATACCAAGAATTC+CGG | 0.416656 | 8.3:-78382365 | None:intergenic |
| GCCTTGGTTGGCATATTTAG+TGG | 0.427792 | 8.3:+78384015 | MS.gene020226:CDS |
| AGAAGGGAAGGTTGTGTATG+TGG | 0.430397 | 8.3:+78383957 | MS.gene020226:CDS |
| TGCTATGTTGTTGGAAGCGC+TGG | 0.439478 | 8.3:+78383066 | MS.gene020226:CDS |
| AGCCATAAACTTACAGATTG+AGG | 0.442715 | 8.3:-78381549 | None:intergenic |
| CTGCAGCCGATAACTGGTTA+TGG | 0.447508 | 8.3:+78382193 | MS.gene020226:intron |
| TCTTTGAGTGCAGGTATGCC+AGG | 0.460876 | 8.3:+78382922 | MS.gene020226:intron |
| ATATGCCAACCAAGGCTTCA+GGG | 0.469173 | 8.3:-78384008 | None:intergenic |
| CTCATAAGAGTCCTCATGTA+AGG | 0.474115 | 8.3:-78381489 | None:intergenic |
| GTTCCTCTTTCCTACTATAC+CGG | 0.475688 | 8.3:+78382346 | MS.gene020226:CDS |
| TGAGAAAGGCCCTGAAGCCT+TGG | 0.477909 | 8.3:+78383999 | MS.gene020226:CDS |
| ACCTCAATGCAGCATTGAAA+AGG | 0.490541 | 8.3:+78383556 | MS.gene020226:CDS |
| TTACACGGTTGCTATGTTGT+TGG | 0.490815 | 8.3:+78383057 | MS.gene020226:CDS |
| ACCAAGAATTCCGGTATAGT+AGG | 0.493636 | 8.3:-78382356 | None:intergenic |
| TCAGCTGCTTCAGGTGCAGT+TGG | 0.494200 | 8.3:+78383009 | MS.gene020226:CDS |
| TTGAAATGTATGTGTGCTGC+AGG | 0.501684 | 8.3:-78382307 | None:intergenic |
| ACCTTCCCTTCTCTGATATG+AGG | 0.504227 | 8.3:-78383946 | None:intergenic |
| TAAGGAAGGTGATATAGTGT+GGG | 0.522542 | 8.3:+78382252 | MS.gene020226:CDS |
| TAGTCTCATGTTCAAGAGTA+CGG | 0.523048 | 8.3:-78383761 | None:intergenic |
| TCCCTTCTCTGATATGAGGC+AGG | 0.531966 | 8.3:-78383942 | None:intergenic |
| ATAAGGAAGGTGATATAGTG+TGG | 0.533080 | 8.3:+78382251 | MS.gene020226:CDS |
| TTCTGGAATCTTAAGAGTAA+TGG | 0.534462 | 8.3:-78381418 | None:intergenic |
| GAAGTAGGCTCTCCCAAGAA+AGG | 0.539338 | 8.3:+78382970 | MS.gene020226:CDS |
| ATAGCTGAGGGTCTTGAGAA+AGG | 0.540813 | 8.3:+78383985 | MS.gene020226:CDS |
| CTCTTGAACATGAGACTACA+TGG | 0.547982 | 8.3:+78383766 | MS.gene020226:CDS |
| ACTTACAGATTGAGGAACAT+AGG | 0.548541 | 8.3:-78381541 | None:intergenic |
| TATAATCGGATTCGTTTGCA+AGG | 0.553002 | 8.3:+78383868 | MS.gene020226:CDS |
| GTTTACTTTGAGAACGTTGG+AGG | 0.568105 | 8.3:+78383724 | MS.gene020226:CDS |
| GCCTCATATCAGAGAAGGGA+AGG | 0.568385 | 8.3:+78383945 | MS.gene020226:CDS |
| ATTACTCTTAAGATTCCAGA+AGG | 0.569583 | 8.3:+78381420 | MS.gene020226:CDS |
| GGACACAAAGATTATAAGGA+AGG | 0.571830 | 8.3:+78382238 | MS.gene020226:CDS |
| AAAGGCCCTGAAGCCTTGGT+TGG | 0.572741 | 8.3:+78384003 | MS.gene020226:CDS |
| ATTCCGGTATAGTAGGAAAG+AGG | 0.577102 | 8.3:-78382349 | None:intergenic |
| ACCACTAAATATGCCAACCA+AGG | 0.577357 | 8.3:-78384016 | None:intergenic |
| GTCCTGCCTCATATCAGAGA+AGG | 0.579424 | 8.3:+78383940 | MS.gene020226:CDS |
| GACGTTTACTTTGAGAACGT+TGG | 0.592728 | 8.3:+78383721 | MS.gene020226:CDS |
| GGCCAATTTGCTAAATTACA+CGG | 0.603555 | 8.3:+78383042 | MS.gene020226:CDS |
| AAGGAAGGTGATATAGTGTG+GGG | 0.603651 | 8.3:+78382253 | MS.gene020226:CDS |
| TCCTGCCTCATATCAGAGAA+GGG | 0.611678 | 8.3:+78383941 | MS.gene020226:CDS |
| TAAATCAGGCACTTTCCAGA+AGG | 0.621084 | 8.3:+78383694 | MS.gene020226:intron |
| TGGTACTGTCAACAATGTTG+AGG | 0.627893 | 8.3:-78381398 | None:intergenic |
| TACAATCTTACTCAACCTGA+AGG | 0.650544 | 8.3:+78383820 | MS.gene020226:CDS |
| AGGAAGGTGATATAGTGTGG+GGG | 0.659217 | 8.3:+78382254 | MS.gene020226:CDS |
| TGTCTTGTGATCCTTACATG+AGG | 0.664048 | 8.3:+78381478 | MS.gene020226:CDS |
| CATGGTCGCATACCTGTGTG+TGG | 0.677659 | 8.3:+78383784 | MS.gene020226:CDS |
| AAGCGCTGGAAGTAAAGAGA+AGG | 0.678662 | 8.3:+78383080 | MS.gene020226:CDS |
| TGTGAGATCATTCCACACAC+AGG | 0.692179 | 8.3:-78383796 | None:intergenic |
| TGAAATGTATGTGTGCTGCA+GGG | 0.693775 | 8.3:-78382306 | None:intergenic |
| GATTGAGGAACATAGGCACG+TGG | 0.744035 | 8.3:-78381534 | None:intergenic |
| GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:+78383972 | MS.gene020226:CDS |
| TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:+78383973 | MS.gene020226:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATAATTATTATTTT+TGG | + | chr8.3:78381942-78381961 | MS.gene020226:intron | 0.0% |
| !!! | TGAAATTTTGTAATAAAATT+AGG | - | chr8.3:78383322-78383341 | None:intergenic | 10.0% |
| !! | AACCAAATATTAATGAATAA+AGG | - | chr8.3:78382602-78382621 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTCTACTTTA+AGG | - | chr8.3:78381605-78381624 | None:intergenic | 15.0% |
| !! | ATCCTTTATTCATTAATATT+TGG | + | chr8.3:78382597-78382616 | MS.gene020226:intron | 15.0% |
| !! | TAAATGAAAAGAAACAAAAA+TGG | - | chr8.3:78383426-78383445 | None:intergenic | 15.0% |
| !! | TTATTACAAAATTTCAATTC+TGG | + | chr8.3:78383326-78383345 | MS.gene020226:intron | 15.0% |
| !! | TTTATTCATTAATATTTGGT+TGG | + | chr8.3:78382601-78382620 | MS.gene020226:intron | 15.0% |
| !!! | AGAGTTTTTTATATGTAAAT+TGG | + | chr8.3:78381611-78381630 | MS.gene020226:intron | 15.0% |
| !!! | TAATCTCAACAAAATTTTAT+AGG | - | chr8.3:78381978-78381997 | None:intergenic | 15.0% |
| !!! | TCTTAGCAAATTATTATTTT+TGG | + | chr8.3:78381700-78381719 | MS.gene020226:intron | 15.0% |
| !! | AAAAACACAATATGTCAAAA+AGG | - | chr8.3:78382903-78382922 | None:intergenic | 20.0% |
| !! | AAATGGAAAACTATTAACAT+AGG | - | chr8.3:78382539-78382558 | None:intergenic | 20.0% |
| !! | ATATTTAGTGGTAAAAATGT+TGG | + | chr8.3:78384027-78384046 | MS.gene020226:CDS | 20.0% |
| !! | CAAAAGACATATTTAAGTAA+AGG | - | chr8.3:78383468-78383487 | None:intergenic | 20.0% |
| !! | TAGCACATATCATATATAAT+CGG | + | chr8.3:78383854-78383873 | MS.gene020226:CDS | 20.0% |
| !! | TGATTGTTGATATTGTATAT+AGG | - | chr8.3:78383237-78383256 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTGAGAATTTGA+AGG | + | chr8.3:78381998-78382017 | MS.gene020226:intron | 20.0% |
| !!! | TTTCACTTTATGTTGATTTA+TGG | + | chr8.3:78382392-78382411 | MS.gene020226:intron | 20.0% |
| ! | AAGTACTTTCGTAATATAAC+TGG | - | chr8.3:78383273-78383292 | None:intergenic | 25.0% |
| ! | AATTTGACAAATACTGAGAA+GGG | - | chr8.3:78381579-78381598 | None:intergenic | 25.0% |
| ! | ATCAGTTCCAAATAACTATA+AGG | - | chr8.3:78382664-78382683 | None:intergenic | 25.0% |
| ! | CATTGATAAAGAGAAGAAAA+TGG | - | chr8.3:78382556-78382575 | None:intergenic | 25.0% |
| ! | GATATCAATTTGTGTAAATC+AGG | + | chr8.3:78383680-78383699 | MS.gene020226:intron | 25.0% |
| ! | GATCTGTTGAAGAATAAATT+TGG | + | chr8.3:78383498-78383517 | MS.gene020226:CDS | 25.0% |
| ! | GTTGATTACTATCATCTATA+CGG | + | chr8.3:78383901-78383920 | MS.gene020226:CDS | 25.0% |
| ! | TAATTTGACAAATACTGAGA+AGG | - | chr8.3:78381580-78381599 | None:intergenic | 25.0% |
| ! | TTCAGACTTTAATTATCTCT+TGG | - | chr8.3:78381793-78381812 | None:intergenic | 25.0% |
| ! | TTTAACCAAAACAACATCAT+TGG | - | chr8.3:78381448-78381467 | None:intergenic | 25.0% |
| ! | TTTCAGTTTCATTTGAAAGT+CGG | + | chr8.3:78382094-78382113 | MS.gene020226:intron | 25.0% |
| !! | AAATTGGTCTCTTCATTATA+TGG | + | chr8.3:78381627-78381646 | MS.gene020226:intron | 25.0% |
| !! | AATTGGTCTCTTCATTATAT+GGG | + | chr8.3:78381628-78381647 | MS.gene020226:intron | 25.0% |
| !! | AATTTCAATTCTGGAAGAAA+TGG | + | chr8.3:78383335-78383354 | MS.gene020226:intron | 25.0% |
| !! | TTCTCTGTATAATCTTTTCT+CGG | + | chr8.3:78382718-78382737 | MS.gene020226:intron | 25.0% |
| !!! | TAATTTGTTGTTTTAACCCT+CGG | + | chr8.3:78381727-78381746 | MS.gene020226:intron | 25.0% |
| AAAAACATTCTCTCCTTTCT+TGG | - | chr8.3:78382986-78383005 | None:intergenic | 30.0% | |
| AAAACATTCTCTCCTTTCTT+GGG | - | chr8.3:78382985-78383004 | None:intergenic | 30.0% | |
| AACCGTGTAATTTAGCAAAT+TGG | - | chr8.3:78383047-78383066 | None:intergenic | 30.0% | |
| AAGAAACAAAAATGGATCTC+AGG | - | chr8.3:78383418-78383437 | None:intergenic | 30.0% | |
| AATTATTCACCAAAGTCATC+AGG | - | chr8.3:78381852-78381871 | None:intergenic | 30.0% | |
| AGAAACAAAAATGGATCTCA+GGG | - | chr8.3:78383417-78383436 | None:intergenic | 30.0% | |
| AGAAGATTCATCATTTATGC+AGG | - | chr8.3:78383135-78383154 | None:intergenic | 30.0% | |
| ATAACACAAACTACACATCA+AGG | - | chr8.3:78382069-78382088 | None:intergenic | 30.0% | |
| ATAGACATAAAACTGCACAT+AGG | - | chr8.3:78382755-78382774 | None:intergenic | 30.0% | |
| ATCTGGACACAAAGATTATA+AGG | + | chr8.3:78382234-78382253 | MS.gene020226:CDS | 30.0% | |
| ATTACTCTTAAGATTCCAGA+AGG | + | chr8.3:78381420-78381439 | MS.gene020226:CDS | 30.0% | |
| GTTCTAGTCAGATACAAATT+CGG | + | chr8.3:78381821-78381840 | MS.gene020226:intron | 30.0% | |
| TAACACAAACTACACATCAA+GGG | - | chr8.3:78382068-78382087 | None:intergenic | 30.0% | |
| TGAATACATACCAAGAATTC+CGG | - | chr8.3:78382368-78382387 | None:intergenic | 30.0% | |
| TGTCTTAGTAATTCGCAATT+CGG | + | chr8.3:78381764-78381783 | MS.gene020226:intron | 30.0% | |
| TTACACAAATTGATATCCAC+CGG | - | chr8.3:78383677-78383696 | None:intergenic | 30.0% | |
| TTATGGTGTCTATAAAGTTC+TGG | + | chr8.3:78382210-78382229 | MS.gene020226:CDS | 30.0% | |
| TTCAGTTTCATTTGAAAGTC+GGG | + | chr8.3:78382095-78382114 | MS.gene020226:intron | 30.0% | |
| TTCATTAATATTTGGTTGGC+TGG | + | chr8.3:78382605-78382624 | MS.gene020226:intron | 30.0% | |
| TTCCTCAATCTGTAAGTTTA+TGG | + | chr8.3:78381547-78381566 | MS.gene020226:intron | 30.0% | |
| TTGCTCTTCTTTGTAGTTAA+TGG | - | chr8.3:78383535-78383554 | None:intergenic | 30.0% | |
| ! | AAACCAGCCTTATAGTTATT+TGG | + | chr8.3:78382654-78382673 | MS.gene020226:intron | 30.0% |
| ! | AAGGAAGATAGTAATTTTGC+TGG | - | chr8.3:78383449-78383468 | None:intergenic | 30.0% |
| ! | CGGGGATAAAGAAATATTTT+TGG | + | chr8.3:78381880-78381899 | MS.gene020226:intron | 30.0% |
| ! | TAAATATGTCTTTTGCAACC+AGG | + | chr8.3:78383473-78383492 | MS.gene020226:intron | 30.0% |
| ! | TGATGTGTAGTTTGTGTTAT+TGG | + | chr8.3:78382069-78382088 | MS.gene020226:intron | 30.0% |
| ! | TGGTGAATAATTTGTGTCTA+CGG | + | chr8.3:78381860-78381879 | MS.gene020226:intron | 30.0% |
| !! | CTATAAGGCTGGTTTAATAT+TGG | - | chr8.3:78382649-78382668 | None:intergenic | 30.0% |
| !! | TATTCTGGTTTCTTTGAAGT+AGG | + | chr8.3:78382955-78382974 | MS.gene020226:CDS | 30.0% |
| !! | TGGGTCAATTTGTTATTAGT+AGG | + | chr8.3:78381647-78381666 | MS.gene020226:intron | 30.0% |
| !! | TTCTGGAATCTTAAGAGTAA+TGG | - | chr8.3:78381421-78381440 | None:intergenic | 30.0% |
| !!! | AATTTGTTGTTTTAACCCTC+GGG | + | chr8.3:78381728-78381747 | MS.gene020226:intron | 30.0% |
| ACTTACAGATTGAGGAACAT+AGG | - | chr8.3:78381544-78381563 | None:intergenic | 35.0% | |
| AGCCATAAACTTACAGATTG+AGG | - | chr8.3:78381552-78381571 | None:intergenic | 35.0% | |
| ATAAGGAAGGTGATATAGTG+TGG | + | chr8.3:78382251-78382270 | MS.gene020226:CDS | 35.0% | |
| ATGTTGAGGTCTGATTCTTT+AGG | - | chr8.3:78381387-78381406 | None:intergenic | 35.0% | |
| GAAACAAAAATGGATCTCAG+GGG | - | chr8.3:78383416-78383435 | None:intergenic | 35.0% | |
| GATAGAGTTGTTTGGATATC+TGG | + | chr8.3:78382504-78382523 | MS.gene020226:intron | 35.0% | |
| GGACACAAAGATTATAAGGA+AGG | + | chr8.3:78382238-78382257 | MS.gene020226:CDS | 35.0% | |
| GTTCCAAATAACTATAAGGC+TGG | - | chr8.3:78382660-78382679 | None:intergenic | 35.0% | |
| TAAGGAAGGTGATATAGTGT+GGG | + | chr8.3:78382252-78382271 | MS.gene020226:CDS | 35.0% | |
| TACAATCTTACTCAACCTGA+AGG | + | chr8.3:78383820-78383839 | MS.gene020226:CDS | 35.0% | |
| TAGACACCATAACCAGTTAT+CGG | - | chr8.3:78382202-78382221 | None:intergenic | 35.0% | |
| TAGTCTCATGTTCAAGAGTA+CGG | - | chr8.3:78383764-78383783 | None:intergenic | 35.0% | |
| TATAATCGGATTCGTTTGCA+AGG | + | chr8.3:78383868-78383887 | MS.gene020226:CDS | 35.0% | |
| TCATCTATACGGCAAATTCT+TGG | + | chr8.3:78383912-78383931 | MS.gene020226:CDS | 35.0% | |
| TGTTGTGTGATAGAGTTGTT+TGG | + | chr8.3:78382496-78382515 | MS.gene020226:intron | 35.0% | |
| ! | CATGTAGTTTTCTTCCATTC+TGG | + | chr8.3:78382871-78382890 | MS.gene020226:intron | 35.0% |
| ! | GGTCAGTTTATACAGTTTTG+CGG | + | chr8.3:78383577-78383596 | MS.gene020226:intron | 35.0% |
| ! | GGTGAATAATTTGTGTCTAC+GGG | + | chr8.3:78381861-78381880 | MS.gene020226:intron | 35.0% |
| ! | GTCAGTTTATACAGTTTTGC+GGG | + | chr8.3:78383578-78383597 | MS.gene020226:intron | 35.0% |
| ! | GTGAATAATTTGTGTCTACG+GGG | + | chr8.3:78381862-78381881 | MS.gene020226:intron | 35.0% |
| ! | TTGTGTTTTTCTTTGAGTGC+AGG | + | chr8.3:78382913-78382932 | MS.gene020226:intron | 35.0% |
| !! | AGGTTCCAATGATGTTGTTT+TGG | + | chr8.3:78381440-78381459 | MS.gene020226:CDS | 35.0% |
| !! | CTTCTGAAACATTATGTGTC+TGG | + | chr8.3:78381357-78381376 | MS.gene020226:CDS | 35.0% |
| !! | GCTAAATTTGTTACACCTTC+AGG | - | chr8.3:78383838-78383857 | None:intergenic | 35.0% |
| !! | GGCCAATTTGCTAAATTACA+CGG | + | chr8.3:78383042-78383061 | MS.gene020226:CDS | 35.0% |
| !! | GTCTATAAAGTTCTGGAATC+TGG | + | chr8.3:78382217-78382236 | MS.gene020226:CDS | 35.0% |
| !! | GTGGATTGATAGAAGCTTTT+GGG | - | chr8.3:78381518-78381537 | None:intergenic | 35.0% |
| AAGGAAGGTGATATAGTGTG+GGG | + | chr8.3:78382253-78382272 | MS.gene020226:CDS | 40.0% | |
| AAGTAAACGTCAATGCCTTC+TGG | - | chr8.3:78383712-78383731 | None:intergenic | 40.0% | |
| ACAACATCATTGGAACCTTC+TGG | - | chr8.3:78381438-78381457 | None:intergenic | 40.0% | |
| ACCAAGAATTCCGGTATAGT+AGG | - | chr8.3:78382359-78382378 | None:intergenic | 40.0% | |
| ACCACTAAATATGCCAACCA+AGG | - | chr8.3:78384019-78384038 | None:intergenic | 40.0% | |
| ATTCCGGTATAGTAGGAAAG+AGG | - | chr8.3:78382352-78382371 | None:intergenic | 40.0% | |
| CCCAAACATTAAGATTAGCG+CGG | - | chr8.3:78383378-78383397 | None:intergenic | 40.0% | |
| CCGCGCTAATCTTAATGTTT+GGG | + | chr8.3:78383375-78383394 | MS.gene020226:intron | 40.0% | |
| CTCATAAGAGTCCTCATGTA+AGG | - | chr8.3:78381492-78381511 | None:intergenic | 40.0% | |
| CTCTTGAACATGAGACTACA+TGG | + | chr8.3:78383766-78383785 | MS.gene020226:CDS | 40.0% | |
| GCTACACAGTTCAAAACAGT+AGG | - | chr8.3:78383170-78383189 | None:intergenic | 40.0% | |
| GTTCCTCTTTCCTACTATAC+CGG | + | chr8.3:78382346-78382365 | MS.gene020226:CDS | 40.0% | |
| TAAATCAGGCACTTTCCAGA+AGG | + | chr8.3:78383694-78383713 | MS.gene020226:intron | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | + | chr8.3:78383973-78383992 | MS.gene020226:CDS | 40.0% | |
| TATTCTTCAACAGATCCACC+TGG | - | chr8.3:78383494-78383513 | None:intergenic | 40.0% | |
| TCCTACTATACCGGAATTCT+TGG | + | chr8.3:78382355-78382374 | MS.gene020226:CDS | 40.0% | |
| TGAAATGTATGTGTGCTGCA+GGG | - | chr8.3:78382309-78382328 | None:intergenic | 40.0% | |
| TGGTACTGTCAACAATGTTG+AGG | - | chr8.3:78381401-78381420 | None:intergenic | 40.0% | |
| TGTCTTGTGATCCTTACATG+AGG | + | chr8.3:78381478-78381497 | MS.gene020226:CDS | 40.0% | |
| TGTTTGGATATCTGGCTGTT+TGG | + | chr8.3:78382512-78382531 | MS.gene020226:intron | 40.0% | |
| TTACACGGTTGCTATGTTGT+TGG | + | chr8.3:78383057-78383076 | MS.gene020226:CDS | 40.0% | |
| TTGAAATGTATGTGTGCTGC+AGG | - | chr8.3:78382310-78382329 | None:intergenic | 40.0% | |
| ! | ACCTCAATGCAGCATTGAAA+AGG | + | chr8.3:78383556-78383575 | MS.gene020226:CDS | 40.0% |
| ! | ACCTTTTCAATGCTGCATTG+AGG | - | chr8.3:78383560-78383579 | None:intergenic | 40.0% |
| ! | ATATGTCTTTTGCAACCAGG+TGG | + | chr8.3:78383476-78383495 | MS.gene020226:intron | 40.0% |
| ! | GACGTTTACTTTGAGAACGT+TGG | + | chr8.3:78383721-78383740 | MS.gene020226:CDS | 40.0% |
| ! | GCATCTACACTTTTGATCGA+AGG | + | chr8.3:78383188-78383207 | MS.gene020226:intron | 40.0% |
| ! | GTTTACTTTGAGAACGTTGG+AGG | + | chr8.3:78383724-78383743 | MS.gene020226:CDS | 40.0% |
| ! | TGAGAATTTGAAGGAAGTGC+TGG | + | chr8.3:78382007-78382026 | MS.gene020226:intron | 40.0% |
| !! | AATATTTGGTTGGCTGGCTT+TGG | + | chr8.3:78382611-78382630 | MS.gene020226:intron | 40.0% |
| !! | CGTGGATTGATAGAAGCTTT+TGG | - | chr8.3:78381519-78381538 | None:intergenic | 40.0% |
| !! | GTTTTTGTTTCAGCTGCTTC+AGG | + | chr8.3:78383000-78383019 | MS.gene020226:CDS | 40.0% |
| AATATGCCAACCAAGGCTTC+AGG | - | chr8.3:78384012-78384031 | None:intergenic | 45.0% | |
| ACACGAGACACTCAACTAAC+CGG | + | chr8.3:78383655-78383674 | MS.gene020226:intron | 45.0% | |
| ACCTTCCCTTCTCTGATATG+AGG | - | chr8.3:78383949-78383968 | None:intergenic | 45.0% | |
| AGAAGGGAAGGTTGTGTATG+TGG | + | chr8.3:78383957-78383976 | MS.gene020226:CDS | 45.0% | |
| AGGAAGGTGATATAGTGTGG+GGG | + | chr8.3:78382254-78382273 | MS.gene020226:CDS | 45.0% | |
| AGTGTGGGGGATAACGAATT+GGG | + | chr8.3:78382267-78382286 | MS.gene020226:CDS | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+AGG | + | chr8.3:78383985-78384004 | MS.gene020226:CDS | 45.0% | |
| ATATGCCAACCAAGGCTTCA+GGG | - | chr8.3:78384011-78384030 | None:intergenic | 45.0% | |
| CCAGAATAAGCAGTCATTCC+TGG | - | chr8.3:78382943-78382962 | None:intergenic | 45.0% | |
| CCAGGAATGACTGCTTATTC+TGG | + | chr8.3:78382940-78382959 | MS.gene020226:CDS | 45.0% | |
| GCCGCGCTAATCTTAATGTT+TGG | + | chr8.3:78383374-78383393 | MS.gene020226:intron | 45.0% | |
| GCCTTGGTTGGCATATTTAG+TGG | + | chr8.3:78384015-78384034 | MS.gene020226:CDS | 45.0% | |
| GTATGTGGAAGACATAGCTG+AGG | + | chr8.3:78383972-78383991 | MS.gene020226:CDS | 45.0% | |
| TAGTGTGGGGGATAACGAAT+TGG | + | chr8.3:78382266-78382285 | MS.gene020226:CDS | 45.0% | |
| TCCTGCCTCATATCAGAGAA+GGG | + | chr8.3:78383941-78383960 | MS.gene020226:CDS | 45.0% | |
| TCGGATTCTCCTGATGACTT+TGG | + | chr8.3:78381840-78381859 | MS.gene020226:intron | 45.0% | |
| TGCTTGCATGCTAGATGCTT+AGG | - | chr8.3:78382812-78382831 | None:intergenic | 45.0% | |
| TGTGAGATCATTCCACACAC+AGG | - | chr8.3:78383799-78383818 | None:intergenic | 45.0% | |
| TTACTAAGACACCTTCCTCC+AGG | - | chr8.3:78381755-78381774 | None:intergenic | 45.0% | |
| TTGTAACTGCAGCCGATAAC+TGG | + | chr8.3:78382187-78382206 | MS.gene020226:intron | 45.0% | |
| ! | CAAAAAGGCACACACCAGAA+TGG | - | chr8.3:78382888-78382907 | None:intergenic | 45.0% |
| !! | AAGCGCTGGAAGTAAAGAGA+AGG | + | chr8.3:78383080-78383099 | MS.gene020226:CDS | 45.0% |
| !! | AAGTGCTGGATACTGGGATA+TGG | + | chr8.3:78382021-78382040 | MS.gene020226:intron | 45.0% |
| !! | TGAAGGAAGTGCTGGATACT+GGG | + | chr8.3:78382015-78382034 | MS.gene020226:intron | 45.0% |
| !! | TTGAAGGAAGTGCTGGATAC+TGG | + | chr8.3:78382014-78382033 | MS.gene020226:intron | 45.0% |
| ATTAGCGCGGCTCTTCAGTT+TGG | - | chr8.3:78383365-78383384 | None:intergenic | 50.0% | |
| CTGCAGCCGATAACTGGTTA+TGG | + | chr8.3:78382193-78382212 | MS.gene020226:intron | 50.0% | |
| GAAGTAGGCTCTCCCAAGAA+AGG | + | chr8.3:78382970-78382989 | MS.gene020226:CDS | 50.0% | |
| GATTGAGGAACATAGGCACG+TGG | - | chr8.3:78381537-78381556 | None:intergenic | 50.0% | |
| GCCTCATATCAGAGAAGGGA+AGG | + | chr8.3:78383945-78383964 | MS.gene020226:CDS | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr8.3:78383021-78383040 | MS.gene020226:CDS | 50.0% | |
| GTCCTGCCTCATATCAGAGA+AGG | + | chr8.3:78383940-78383959 | MS.gene020226:CDS | 50.0% | |
| TCCCTTCTCTGATATGAGGC+AGG | - | chr8.3:78383945-78383964 | None:intergenic | 50.0% | |
| TCTTTGAGTGCAGGTATGCC+AGG | + | chr8.3:78382922-78382941 | MS.gene020226:intron | 50.0% | |
| ! | TGCTATGTTGTTGGAAGCGC+TGG | + | chr8.3:78383066-78383085 | MS.gene020226:CDS | 50.0% |
| !! | GTTGGCTGGCTTTGGTTTGA+AGG | + | chr8.3:78382619-78382638 | MS.gene020226:intron | 50.0% |
| !!! | TTGTTTTAACCCTCGGGTCC+TGG | + | chr8.3:78381734-78381753 | MS.gene020226:intron | 50.0% |
| AAAGGCCCTGAAGCCTTGGT+TGG | + | chr8.3:78384003-78384022 | MS.gene020226:CDS | 55.0% | |
| CATGGTCGCATACCTGTGTG+TGG | + | chr8.3:78383784-78383803 | MS.gene020226:CDS | 55.0% | |
| CGAGACACTCAACTAACCGG+TGG | + | chr8.3:78383658-78383677 | MS.gene020226:intron | 55.0% | |
| TCAGCTGCTTCAGGTGCAGT+TGG | + | chr8.3:78383009-78383028 | MS.gene020226:CDS | 55.0% | |
| TGAGAAAGGCCCTGAAGCCT+TGG | + | chr8.3:78383999-78384018 | MS.gene020226:CDS | 55.0% | |
| ! | TTTTAACCCTCGGGTCCTGG+AGG | + | chr8.3:78381737-78381756 | MS.gene020226:intron | 55.0% |
| AACCCTCGGGTCCTGGAGGA+AGG | + | chr8.3:78381741-78381760 | MS.gene020226:intron | 65.0% | |
| ACACCTTCCTCCAGGACCCG+AGG | - | chr8.3:78381747-78381766 | None:intergenic | 65.0% | |
| CACCTTCCTCCAGGACCCGA+GGG | - | chr8.3:78381746-78381765 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78381330 | 78384080 | 78381330 | ID=MS.gene020226 |
| chr8.3 | mRNA | 78381330 | 78384080 | 78381330 | ID=MS.gene020226.t1;Parent=MS.gene020226 |
| chr8.3 | exon | 78381330 | 78381557 | 78381330 | ID=MS.gene020226.t1.exon1;Parent=MS.gene020226.t1 |
| chr8.3 | CDS | 78381330 | 78381557 | 78381330 | ID=cds.MS.gene020226.t1;Parent=MS.gene020226.t1 |
| chr8.3 | exon | 78382199 | 78382376 | 78382199 | ID=MS.gene020226.t1.exon2;Parent=MS.gene020226.t1 |
| chr8.3 | CDS | 78382199 | 78382376 | 78382199 | ID=cds.MS.gene020226.t1;Parent=MS.gene020226.t1 |
| chr8.3 | exon | 78382935 | 78383101 | 78382935 | ID=MS.gene020226.t1.exon3;Parent=MS.gene020226.t1 |
| chr8.3 | CDS | 78382935 | 78383101 | 78382935 | ID=cds.MS.gene020226.t1;Parent=MS.gene020226.t1 |
| chr8.3 | exon | 78383495 | 78383577 | 78383495 | ID=MS.gene020226.t1.exon4;Parent=MS.gene020226.t1 |
| chr8.3 | CDS | 78383495 | 78383577 | 78383495 | ID=cds.MS.gene020226.t1;Parent=MS.gene020226.t1 |
| chr8.3 | exon | 78383702 | 78384080 | 78383702 | ID=MS.gene020226.t1.exon5;Parent=MS.gene020226.t1 |
| chr8.3 | CDS | 78383702 | 78384080 | 78383702 | ID=cds.MS.gene020226.t1;Parent=MS.gene020226.t1 |
| Gene Sequence |
| Protein sequence |
