Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022735.t1 | XP_013443994.1 | 97.4 | 344 | 9 | 0 | 1 | 344 | 1 | 344 | 2.10E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022735.t1 | Q39173 | 69.7 | 340 | 102 | 1 | 6 | 344 | 4 | 343 | 1.4e-139 | 497.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022735.t1 | A0A072TLD0 | 97.4 | 344 | 9 | 0 | 1 | 344 | 1 | 344 | 1.5e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39313 | MS.gene022735 | PPI |
| MS.gene39314 | MS.gene022735 | PPI |
| MS.gene067859 | MS.gene022735 | PPI |
| MS.gene39315 | MS.gene022735 | PPI |
| MS.gene022735 | MS.gene022736 | PPI |
| MS.gene54434 | MS.gene022735 | PPI |
| MS.gene022721 | MS.gene022735 | PPI |
| MS.gene042467 | MS.gene022735 | PPI |
| MS.gene08162 | MS.gene022735 | PPI |
| MS.gene020077 | MS.gene022735 | PPI |
| MS.gene069341 | MS.gene022735 | PPI |
| MS.gene41778 | MS.gene022735 | PPI |
| MS.gene022736 | MS.gene022735 | PPI |
| MS.gene020033 | MS.gene022735 | PPI |
| MS.gene022738 | MS.gene022735 | PPI |
| MS.gene020225 | MS.gene022735 | PPI |
| MS.gene39327 | MS.gene022735 | PPI |
| MS.gene45375 | MS.gene022735 | PPI |
| MS.gene022735 | MS.gene45375 | PPI |
| MS.gene022722 | MS.gene022735 | PPI |
| MS.gene54433 | MS.gene022735 | PPI |
| MS.gene022735 | MS.gene020227 | PPI |
| MS.gene97874 | MS.gene022735 | PPI |
| MS.gene020226 | MS.gene022735 | PPI |
| MS.gene020228 | MS.gene022735 | PPI |
| MS.gene020076 | MS.gene022735 | PPI |
| MS.gene022737 | MS.gene022735 | PPI |
| MS.gene39312 | MS.gene022735 | PPI |
| MS.gene020227 | MS.gene022735 | PPI |
| MS.gene39326 | MS.gene022735 | PPI |
| MS.gene020239 | MS.gene022735 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022735.t1 | MTR_8g009980 | 97.384 | 344 | 9 | 0 | 1 | 344 | 1 | 344 | 0.0 | 693 |
| MS.gene022735.t1 | MTR_8g010030 | 82.029 | 345 | 60 | 2 | 1 | 344 | 1 | 344 | 0.0 | 588 |
| MS.gene022735.t1 | MTR_8g009820 | 80.870 | 345 | 63 | 2 | 1 | 344 | 60 | 402 | 0.0 | 568 |
| MS.gene022735.t1 | MTR_8g009840 | 81.711 | 339 | 58 | 3 | 1 | 338 | 1 | 336 | 0.0 | 558 |
| MS.gene022735.t1 | MTR_8g009830 | 80.000 | 345 | 65 | 3 | 1 | 344 | 1 | 342 | 0.0 | 553 |
| MS.gene022735.t1 | MTR_8g010020 | 73.837 | 344 | 58 | 1 | 1 | 344 | 1 | 312 | 0.0 | 523 |
| MS.gene022735.t1 | MTR_8g010000 | 71.884 | 345 | 70 | 3 | 1 | 344 | 1 | 319 | 0.0 | 513 |
| MS.gene022735.t1 | MTR_4g082970 | 68.035 | 341 | 109 | 0 | 4 | 344 | 10 | 350 | 3.09e-168 | 472 |
| MS.gene022735.t1 | MTR_7g406860 | 60.405 | 346 | 133 | 3 | 1 | 344 | 3 | 346 | 2.28e-146 | 417 |
| MS.gene022735.t1 | MTR_8g007325 | 81.364 | 220 | 38 | 2 | 1 | 219 | 1 | 218 | 2.76e-125 | 358 |
| MS.gene022735.t1 | MTR_0011s0280 | 45.954 | 346 | 182 | 2 | 3 | 344 | 2 | 346 | 2.13e-110 | 325 |
| MS.gene022735.t1 | MTR_2g088190 | 41.279 | 344 | 195 | 6 | 4 | 341 | 5 | 347 | 9.68e-80 | 247 |
| MS.gene022735.t1 | MTR_2g088220 | 42.075 | 347 | 188 | 8 | 4 | 341 | 6 | 348 | 2.95e-75 | 236 |
| MS.gene022735.t1 | MTR_2g088200 | 39.815 | 324 | 185 | 6 | 4 | 319 | 5 | 326 | 3.15e-69 | 220 |
| MS.gene022735.t1 | MTR_5g095030 | 53.906 | 128 | 59 | 0 | 215 | 342 | 9 | 136 | 2.40e-46 | 154 |
| MS.gene022735.t1 | MTR_4g086410 | 33.740 | 246 | 148 | 6 | 103 | 341 | 385 | 622 | 3.56e-25 | 106 |
| MS.gene022735.t1 | MTR_4g086400 | 33.061 | 245 | 151 | 6 | 103 | 341 | 245 | 482 | 1.62e-24 | 104 |
| MS.gene022735.t1 | MTR_4g086400 | 30.462 | 325 | 198 | 10 | 33 | 341 | 310 | 622 | 2.49e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022735.t1 | AT3G03080 | 70.435 | 345 | 99 | 2 | 2 | 344 | 7 | 350 | 1.03e-177 | 496 |
| MS.gene022735.t1 | AT5G16990 | 69.706 | 340 | 102 | 1 | 6 | 344 | 4 | 343 | 3.54e-177 | 495 |
| MS.gene022735.t1 | AT5G16970 | 69.501 | 341 | 102 | 2 | 6 | 344 | 5 | 345 | 1.11e-176 | 494 |
| MS.gene022735.t1 | AT5G17000 | 69.501 | 341 | 102 | 2 | 6 | 344 | 5 | 345 | 4.31e-175 | 489 |
| MS.gene022735.t1 | AT1G26320 | 68.406 | 345 | 103 | 3 | 4 | 344 | 9 | 351 | 2.78e-173 | 485 |
| MS.gene022735.t1 | AT5G16960 | 67.733 | 344 | 109 | 2 | 1 | 342 | 1 | 344 | 5.00e-170 | 477 |
| MS.gene022735.t1 | AT5G16960 | 67.733 | 344 | 109 | 2 | 1 | 342 | 1 | 344 | 5.00e-170 | 477 |
| MS.gene022735.t1 | AT5G37980 | 67.442 | 344 | 105 | 3 | 6 | 344 | 12 | 353 | 8.16e-170 | 476 |
| MS.gene022735.t1 | AT1G26320 | 67.246 | 345 | 102 | 4 | 4 | 344 | 9 | 346 | 8.79e-169 | 474 |
| MS.gene022735.t1 | AT5G37940 | 66.667 | 342 | 111 | 2 | 6 | 344 | 12 | 353 | 1.20e-168 | 474 |
| MS.gene022735.t1 | AT5G38000 | 65.598 | 343 | 111 | 3 | 6 | 343 | 12 | 352 | 8.93e-166 | 466 |
| MS.gene022735.t1 | AT5G38000 | 64.201 | 338 | 111 | 4 | 6 | 335 | 12 | 347 | 2.95e-158 | 447 |
| MS.gene022735.t1 | AT3G59845 | 63.557 | 343 | 120 | 4 | 4 | 342 | 5 | 346 | 5.60e-154 | 436 |
| MS.gene022735.t1 | AT5G38000 | 61.808 | 343 | 105 | 4 | 6 | 343 | 12 | 333 | 2.31e-150 | 426 |
| MS.gene022735.t1 | AT1G65560 | 58.382 | 346 | 137 | 4 | 4 | 344 | 7 | 350 | 1.37e-135 | 390 |
| MS.gene022735.t1 | AT5G16980 | 58.140 | 344 | 105 | 5 | 1 | 344 | 1 | 305 | 1.63e-133 | 383 |
| MS.gene022735.t1 | AT5G16980 | 76.106 | 226 | 54 | 0 | 119 | 344 | 14 | 239 | 2.22e-125 | 359 |
| MS.gene022735.t1 | AT5G16980 | 76.106 | 226 | 54 | 0 | 119 | 344 | 14 | 239 | 2.22e-125 | 359 |
| MS.gene022735.t1 | AT3G59845 | 70.612 | 245 | 70 | 2 | 99 | 342 | 1 | 244 | 5.75e-122 | 351 |
| MS.gene022735.t1 | AT1G65560 | 61.255 | 271 | 101 | 2 | 78 | 344 | 4 | 274 | 2.50e-112 | 328 |
| MS.gene022735.t1 | AT5G17000 | 69.444 | 216 | 64 | 2 | 6 | 219 | 5 | 220 | 1.82e-106 | 312 |
| MS.gene022735.t1 | AT1G49670 | 31.776 | 321 | 195 | 11 | 33 | 341 | 310 | 618 | 1.30e-25 | 108 |
| MS.gene022735.t1 | AT1G49670 | 29.619 | 341 | 199 | 12 | 33 | 341 | 310 | 641 | 1.88e-22 | 99.0 |
| MS.gene022735.t1 | AT5G37960 | 49.333 | 75 | 38 | 0 | 265 | 339 | 27 | 101 | 1.12e-17 | 78.2 |
Find 85 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCAAGAATTTAGGATTT+AGG | 0.194891 | 8.3:-78633919 | None:intergenic |
| TCACCTAAATCCTAAATTCT+TGG | 0.229492 | 8.3:+78633916 | MS.gene022735:CDS |
| ATAAGGAAGGTGATTTAGTT+TGG | 0.258281 | 8.3:+78631936 | MS.gene022735:CDS |
| AGGACAAACTCCAAGAATTT+AGG | 0.263093 | 8.3:-78633926 | None:intergenic |
| ATGTTCATGTCTGATTCTTT+AGG | 0.265462 | 8.3:-78631409 | None:intergenic |
| AAAACAGTCTCTCCTTTCTT+AGG | 0.292283 | 8.3:-78632862 | None:intergenic |
| GACAAATTCGTTACAGGTTC+AGG | 0.298286 | 8.3:-78633839 | None:intergenic |
| TTACAGGTAATAGCAGGTTT+TGG | 0.310515 | 8.3:+78631878 | MS.gene022735:intron |
| AGATGTGACAAATTCGTTAC+AGG | 0.326635 | 8.3:-78633845 | None:intergenic |
| TAAGGAAGGTGATTTAGTTT+GGG | 0.330541 | 8.3:+78631937 | MS.gene022735:CDS |
| AAGTAAATATCAATGCCTTC+AGG | 0.336754 | 8.3:-78633713 | None:intergenic |
| ATCAGGACATCCTGATTATA+AGG | 0.342738 | 8.3:+78631919 | MS.gene022735:CDS |
| GGTGTATGCAAGAGGATTAA+TGG | 0.357458 | 8.3:-78631551 | None:intergenic |
| AAGAATAAATTTGGATTTGA+CGG | 0.374698 | 8.3:+78633485 | MS.gene022735:CDS |
| GTCCCACTTTCCTACTATAC+TGG | 0.376088 | 8.3:+78632031 | MS.gene022735:CDS |
| TAGTTTGGGGATTCTGCAAA+TGG | 0.386130 | 8.3:+78631951 | MS.gene022735:CDS |
| TTCATGAGATTCCTCATGAA+TGG | 0.393169 | 8.3:-78631511 | None:intergenic |
| TTGAAAAGTATTTGAGATGA+AGG | 0.399783 | 8.3:-78631992 | None:intergenic |
| AAGCTTTAACTTACAGATTG+AGG | 0.403200 | 8.3:-78631574 | None:intergenic |
| AAATCACCTTCCTTATAATC+AGG | 0.409142 | 8.3:-78631929 | None:intergenic |
| TCCTACTATACTGGAATTCT+CGG | 0.425528 | 8.3:+78632040 | MS.gene022735:CDS |
| TTCAAAGCTGCATCGAGGTC+AGG | 0.432481 | 8.3:-78633530 | None:intergenic |
| GGTGCAGTCGGTCAACTTGT+TGG | 0.439651 | 8.3:+78632901 | MS.gene022735:CDS |
| CCAGCATAAGCAGTTATTCC+TGG | 0.442475 | 8.3:-78632820 | None:intergenic |
| GTGTCTAAAGTCCTTGAATC+AGG | 0.445040 | 8.3:+78631902 | MS.gene022735:CDS |
| GTGTATGCAAGAGGATTAAT+GGG | 0.451553 | 8.3:-78631550 | None:intergenic |
| CTGACAGGATGTTATGTTGT+AGG | 0.455877 | 8.3:+78632937 | MS.gene022735:CDS |
| TGTTATGTTGTAGGAAGTGC+TGG | 0.456488 | 8.3:+78632946 | MS.gene022735:CDS |
| AATCAGGATGTCCTGATTCA+AGG | 0.467897 | 8.3:-78631913 | None:intergenic |
| AATGGTCCTGCAGCATTGAT+TGG | 0.469066 | 8.3:+78634007 | MS.gene022735:CDS |
| GATATTTACTTTGAGAATGT+TGG | 0.469382 | 8.3:+78633725 | MS.gene022735:CDS |
| CAACATTGCGACCACTATAC+AGG | 0.474009 | 8.3:-78634030 | None:intergenic |
| AGCTTTAACTTACAGATTGA+GGG | 0.474523 | 8.3:-78631573 | None:intergenic |
| TCTTTGAACACAGGTATGCC+AGG | 0.489073 | 8.3:+78632802 | MS.gene022735:intron |
| CACAAGCAGGTATGCGGCCA+TGG | 0.491073 | 8.3:-78633787 | None:intergenic |
| CAGTAATTACAGGTAATAGC+AGG | 0.502936 | 8.3:+78631872 | MS.gene022735:intron |
| ACCGAGAATTCCAGTATAGT+AGG | 0.503877 | 8.3:-78632041 | None:intergenic |
| ACCTCGATGCAGCTTTGAAG+AGG | 0.517469 | 8.3:+78633534 | MS.gene022735:CDS |
| CCAGGAATAACTGCTTATGC+TGG | 0.521588 | 8.3:+78632820 | MS.gene022735:CDS |
| TGAAAAGTATTTGAGATGAA+GGG | 0.523632 | 8.3:-78631991 | None:intergenic |
| ATTTACTTTGAGAATGTTGG+AGG | 0.524827 | 8.3:+78633728 | MS.gene022735:CDS |
| GGTCAATTCGCTAAACTGAC+AGG | 0.527324 | 8.3:+78632922 | MS.gene022735:CDS |
| ATTCCAGTATAGTAGGAAAG+TGG | 0.530249 | 8.3:-78632034 | None:intergenic |
| ATAACTGAGGGTCTTGAGAA+TGG | 0.532568 | 8.3:+78633989 | MS.gene022735:CDS |
| ATACTGAAGGACTATGTGTC+TGG | 0.534384 | 8.3:+78631382 | MS.gene022735:CDS |
| CAAATGGGAAGAGTACAGTT+TGG | 0.537330 | 8.3:+78631967 | MS.gene022735:CDS |
| AGTAAATATCAATGCCTTCA+GGG | 0.538437 | 8.3:-78633712 | None:intergenic |
| TATGCTGGTTTCTTTGAACT+AGG | 0.545755 | 8.3:+78632835 | MS.gene022735:CDS |
| TACAGGCCAATCAATGCTGC+AGG | 0.549132 | 8.3:-78634013 | None:intergenic |
| TCAGCTGCCTCTGGTGCAGT+CGG | 0.551705 | 8.3:+78632889 | MS.gene022735:CDS |
| AATAAATTTGGATTTGACGG+AGG | 0.551855 | 8.3:+78633488 | MS.gene022735:CDS |
| TCCTCCCTCATATCAGAGAC+GGG | 0.552336 | 8.3:+78633945 | MS.gene022735:CDS |
| AAGGAAGGTGATTTAGTTTG+GGG | 0.554385 | 8.3:+78631938 | MS.gene022735:CDS |
| GTCCTCCCTCATATCAGAGA+CGG | 0.557651 | 8.3:+78633944 | MS.gene022735:CDS |
| AAGTGCTGGAAGTAAAGAGA+AGG | 0.561804 | 8.3:+78632960 | MS.gene022735:CDS |
| GAACTAGGCAGTCCTAAGAA+AGG | 0.566199 | 8.3:+78632850 | MS.gene022735:CDS |
| CATATATAAGCGGATTCGAA+TGG | 0.569235 | 8.3:+78633868 | MS.gene022735:CDS |
| GCATTGATTGGCCTGTATAG+TGG | 0.570454 | 8.3:+78634019 | MS.gene022735:CDS |
| CTTCTGAATATGAGAGTCCA+TGG | 0.570985 | 8.3:+78633770 | MS.gene022735:CDS |
| CTGTATAGTGGTCGCAATGT+TGG | 0.571188 | 8.3:+78634031 | MS.gene022735:CDS |
| TATAAGCGGATTCGAATGGA+AGG | 0.574885 | 8.3:+78633872 | MS.gene022735:CDS |
| GGACATCCTGATTATAAGGA+AGG | 0.575310 | 8.3:+78631923 | MS.gene022735:CDS |
| AGTTTGGGGATTCTGCAAAT+GGG | 0.577655 | 8.3:+78631952 | MS.gene022735:CDS |
| TGACGGAGGTTTCAACTACA+AGG | 0.579141 | 8.3:+78633502 | MS.gene022735:CDS |
| TTCCAGTATAGTAGGAAAGT+GGG | 0.584748 | 8.3:-78632033 | None:intergenic |
| TGTGAGATCATTCCACAAGC+AGG | 0.587370 | 8.3:-78633800 | None:intergenic |
| CAAATCAGGCACTTCCCTGA+AGG | 0.588407 | 8.3:+78633698 | MS.gene022735:intron |
| CATGGCCGCATACCTGCTTG+TGG | 0.591190 | 8.3:+78633788 | MS.gene022735:CDS |
| TGTCACATCTCATATATAAG+CGG | 0.600724 | 8.3:+78633858 | MS.gene022735:CDS |
| GCTTTAACTTACAGATTGAG+GGG | 0.600804 | 8.3:-78631572 | None:intergenic |
| GGATTAATGGGAGCTCCTTG+TGG | 0.608435 | 8.3:-78631538 | None:intergenic |
| AGAATATCATTGGAACATTG+TGG | 0.632652 | 8.3:-78631460 | None:intergenic |
| GATTGAGGGGTGTATGCAAG+AGG | 0.633379 | 8.3:-78631559 | None:intergenic |
| TCCCGTCTCTGATATGAGGG+AGG | 0.638712 | 8.3:-78633946 | None:intergenic |
| TGTCTTGTGATCCATTCATG+AGG | 0.654206 | 8.3:+78631500 | MS.gene022735:CDS |
| TCATTCCACAAGCAGGTATG+CGG | 0.655597 | 8.3:-78633793 | None:intergenic |
| TACCAAACATGGCACAAGTG+AGG | 0.656499 | 8.3:+78631347 | None:intergenic |
| AAGTTGACCGACTGCACCAG+AGG | 0.660264 | 8.3:-78632896 | None:intergenic |
| ATAAGCGGATTCGAATGGAA+GGG | 0.669316 | 8.3:+78633873 | MS.gene022735:CDS |
| GAACAAGCAAGTGATACTGA+AGG | 0.679731 | 8.3:+78631369 | MS.gene022735:CDS |
| ACCTCTTCAAAGCTGCATCG+AGG | 0.685554 | 8.3:-78633535 | None:intergenic |
| TCGCAATGTTGGTAAACAAG+TGG | 0.707437 | 8.3:+78634042 | MS.gene022735:CDS |
| AATCTCATGAACAAACCACA+AGG | 0.737957 | 8.3:+78631523 | MS.gene022735:CDS |
| TATGTTGAAGACATAACTGA+GGG | 0.741574 | 8.3:+78633977 | MS.gene022735:CDS |
| GTATGTTGAAGACATAACTG+AGG | 0.767481 | 8.3:+78633976 | MS.gene022735:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATTATATATACAAATA+AGG | - | chr8.3:78633209-78633228 | None:intergenic | 10.0% |
| !! | CATAAGTTTATAAATTATAA+TGG | - | chr8.3:78633623-78633642 | None:intergenic | 10.0% |
| !!! | TTTAATTTTATTTTTTGGAT+AGG | - | chr8.3:78633171-78633190 | None:intergenic | 10.0% |
| !!! | TTTCAATTTATATTGATTTA+TGG | + | chr8.3:78632077-78632096 | MS.gene022735:intron | 10.0% |
| !!! | AACTACTGAATTTTATTATT+CGG | - | chr8.3:78633654-78633673 | None:intergenic | 15.0% |
| !! | AAAATTTGCATAATGAATTG+TGG | + | chr8.3:78633348-78633367 | MS.gene022735:intron | 20.0% |
| !! | AAATTTGACATATACTCAAA+AGG | - | chr8.3:78631611-78631630 | None:intergenic | 20.0% |
| !! | AAGAATAAATTTGGATTTGA+CGG | + | chr8.3:78633485-78633504 | MS.gene022735:CDS | 20.0% |
| !! | AAGGAGTTATAAAGTTATAA+AGG | + | chr8.3:78633082-78633101 | MS.gene022735:intron | 20.0% |
| !! | AATGAGAACATTAAAAACTT+AGG | - | chr8.3:78632683-78632702 | None:intergenic | 20.0% |
| !! | AATTTGACATATACTCAAAA+GGG | - | chr8.3:78631610-78631629 | None:intergenic | 20.0% |
| !! | AGATAAGAAAAGATACTTTA+AGG | - | chr8.3:78631637-78631656 | None:intergenic | 20.0% |
| !! | CAATTATGAAAAGAAGAAAA+TGG | - | chr8.3:78632585-78632604 | None:intergenic | 20.0% |
| !! | CAGTAAAAAAAAACTATTTC+AGG | - | chr8.3:78633398-78633417 | None:intergenic | 20.0% |
| !! | TATATATACAAATAAGGAAC+AGG | - | chr8.3:78633203-78633222 | None:intergenic | 20.0% |
| !! | TATATCGAAATATACAAATC+AGG | + | chr8.3:78633684-78633703 | MS.gene022735:intron | 20.0% |
| !! | TATCACTATCATTAAACAAT+AGG | + | chr8.3:78632463-78632482 | MS.gene022735:intron | 20.0% |
| !! | TCTTAGCAAATTAAAGAAAT+TGG | + | chr8.3:78631723-78631742 | MS.gene022735:intron | 20.0% |
| !!! | AATGTATGTATACAGTTTTA+TGG | + | chr8.3:78633222-78633241 | MS.gene022735:intron | 20.0% |
| !!! | AATTGAAGGTTATTTAGAAT+TGG | + | chr8.3:78632600-78632619 | MS.gene022735:intron | 20.0% |
| !!! | ATTTTTTAGCAGAATATCAT+TGG | - | chr8.3:78631473-78631492 | None:intergenic | 20.0% |
| !!! | GATAATTTTTCAGTAATTAC+AGG | + | chr8.3:78631862-78631881 | MS.gene022735:intron | 20.0% |
| !!! | GATCTTTTGAAGAATAAATT+TGG | + | chr8.3:78633476-78633495 | MS.gene022735:CDS | 20.0% |
| !!! | GGCGATTTAATTTTATTTTT+TGG | - | chr8.3:78633176-78633195 | None:intergenic | 20.0% |
| !!! | TATTGTTTAATGATAGTGAT+AGG | - | chr8.3:78632464-78632483 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTTTCATAATTGA+AGG | + | chr8.3:78632586-78632605 | MS.gene022735:intron | 20.0% |
| !!! | TTTTGTTTAATGAGTAAGTT+AGG | + | chr8.3:78632179-78632198 | MS.gene022735:intron | 20.0% |
| ! | ATAAAGGTTAAATAAGTCGA+AGG | + | chr8.3:78633063-78633082 | MS.gene022735:intron | 25.0% |
| ! | CATTAAACAATAGGTATAGT+TGG | + | chr8.3:78632472-78632491 | MS.gene022735:intron | 25.0% |
| ! | GAAAAGAAGAAAATGGAAAA+GGG | - | chr8.3:78632578-78632597 | None:intergenic | 25.0% |
| ! | GTTATAAAGTTATAAAGGAC+CGG | + | chr8.3:78633087-78633106 | MS.gene022735:intron | 25.0% |
| ! | TGAAAAGAAGAAAATGGAAA+AGG | - | chr8.3:78632579-78632598 | None:intergenic | 25.0% |
| ! | TTATAAAGTTATAAAGGACC+GGG | + | chr8.3:78633088-78633107 | MS.gene022735:intron | 25.0% |
| !! | AAAAAAACTATTTCAGGTCT+TGG | - | chr8.3:78633392-78633411 | None:intergenic | 25.0% |
| !! | GATATTTACTTTGAGAATGT+TGG | + | chr8.3:78633725-78633744 | MS.gene022735:CDS | 25.0% |
| !!! | ATGGTTCTAATGTACAAATT+TGG | + | chr8.3:78633241-78633260 | MS.gene022735:intron | 25.0% |
| !!! | ATGTTTTTTTTACAATCAGG+TGG | + | chr8.3:78633454-78633473 | MS.gene022735:intron | 25.0% |
| !!! | TGAAAAGTATTTGAGATGAA+GGG | - | chr8.3:78631994-78632013 | None:intergenic | 25.0% |
| !!! | TGCATGTTTTTTTTACAATC+AGG | + | chr8.3:78633451-78633470 | MS.gene022735:intron | 25.0% |
| !!! | TTGAAAAGTATTTGAGATGA+AGG | - | chr8.3:78631995-78632014 | None:intergenic | 25.0% |
| AAATCACCTTCCTTATAATC+AGG | - | chr8.3:78631932-78631951 | None:intergenic | 30.0% | |
| AAGTAAATATCAATGCCTTC+AGG | - | chr8.3:78633716-78633735 | None:intergenic | 30.0% | |
| AATAAATTTGGATTTGACGG+AGG | + | chr8.3:78633488-78633507 | MS.gene022735:CDS | 30.0% | |
| ACATGCATTCAAACAAAAGA+AGG | - | chr8.3:78633438-78633457 | None:intergenic | 30.0% | |
| AGAATATCATTGGAACATTG+TGG | - | chr8.3:78631463-78631482 | None:intergenic | 30.0% | |
| AGTAAATATCAATGCCTTCA+GGG | - | chr8.3:78633715-78633734 | None:intergenic | 30.0% | |
| ATAAGGAAGGTGATTTAGTT+TGG | + | chr8.3:78631936-78631955 | MS.gene022735:CDS | 30.0% | |
| ATGTATCTTCCATGACAAAA+TGG | - | chr8.3:78632509-78632528 | None:intergenic | 30.0% | |
| ATGTTCATGTCTGATTCTTT+AGG | - | chr8.3:78631412-78631431 | None:intergenic | 30.0% | |
| ATTCAAACAAAAGAAGGACT+AGG | - | chr8.3:78633432-78633451 | None:intergenic | 30.0% | |
| CAAACACTAATAATCAGCTA+CGG | - | chr8.3:78632158-78632177 | None:intergenic | 30.0% | |
| CAGTATCAATGTAGAGAAAA+TGG | - | chr8.3:78632421-78632440 | None:intergenic | 30.0% | |
| TACAAATAAGGAACAGGTTA+TGG | - | chr8.3:78633197-78633216 | None:intergenic | 30.0% | |
| TATAAAGTTATAAAGGACCG+GGG | + | chr8.3:78633089-78633108 | MS.gene022735:intron | 30.0% | |
| TATGTTGAAGACATAACTGA+GGG | + | chr8.3:78633977-78633996 | MS.gene022735:CDS | 30.0% | |
| TCACCTAAATCCTAAATTCT+TGG | + | chr8.3:78633916-78633935 | MS.gene022735:CDS | 30.0% | |
| TCGTATCAATAAAACTTGCA+GGG | + | chr8.3:78632384-78632403 | MS.gene022735:intron | 30.0% | |
| TGTCACATCTCATATATAAG+CGG | + | chr8.3:78633858-78633877 | MS.gene022735:CDS | 30.0% | |
| TTCGTATCAATAAAACTTGC+AGG | + | chr8.3:78632383-78632402 | MS.gene022735:intron | 30.0% | |
| ! | AAGCTTTAACTTACAGATTG+AGG | - | chr8.3:78631577-78631596 | None:intergenic | 30.0% |
| ! | ACTCCAAGAATTTAGGATTT+AGG | - | chr8.3:78633922-78633941 | None:intergenic | 30.0% |
| ! | ACTTTTCAAAATTGAGCACA+CGG | + | chr8.3:78632006-78632025 | MS.gene022735:CDS | 30.0% |
| ! | AGCTTTAACTTACAGATTGA+GGG | - | chr8.3:78631576-78631595 | None:intergenic | 30.0% |
| ! | ATTTACTTTGAGAATGTTGG+AGG | + | chr8.3:78633728-78633747 | MS.gene022735:CDS | 30.0% |
| ! | GTTAAAAAAGCACAACAGAA+TGG | - | chr8.3:78632768-78632787 | None:intergenic | 30.0% |
| ! | GTTGAGCTAGTTTGATATAA+AGG | + | chr8.3:78633047-78633066 | MS.gene022735:intron | 30.0% |
| ! | TAAGGAAGGTGATTTAGTTT+GGG | + | chr8.3:78631937-78631956 | MS.gene022735:CDS | 30.0% |
| ! | TACAATTTTCTCCTTCACTA+GGG | - | chr8.3:78633121-78633140 | None:intergenic | 30.0% |
| ! | TTACAATTTTCTCCTTCACT+AGG | - | chr8.3:78633122-78633141 | None:intergenic | 30.0% |
| ! | TTTTTCCCTCCATTTTCTTT+TGG | - | chr8.3:78633332-78633351 | None:intergenic | 30.0% |
| !! | AAATGGAAAAGGGTTGATAA+AGG | - | chr8.3:78632568-78632587 | None:intergenic | 30.0% |
| AAAACAGTCTCTCCTTTCTT+AGG | - | chr8.3:78632865-78632884 | None:intergenic | 35.0% | |
| AATCTCATGAACAAACCACA+AGG | + | chr8.3:78631523-78631542 | MS.gene022735:CDS | 35.0% | |
| AGATGTGACAAATTCGTTAC+AGG | - | chr8.3:78633848-78633867 | None:intergenic | 35.0% | |
| AGGACAAACTCCAAGAATTT+AGG | - | chr8.3:78633929-78633948 | None:intergenic | 35.0% | |
| ATCAGGACATCCTGATTATA+AGG | + | chr8.3:78631919-78631938 | MS.gene022735:CDS | 35.0% | |
| ATTCCAGTATAGTAGGAAAG+TGG | - | chr8.3:78632037-78632056 | None:intergenic | 35.0% | |
| CAGTAATTACAGGTAATAGC+AGG | + | chr8.3:78631872-78631891 | MS.gene022735:intron | 35.0% | |
| CAGTCCTATTTATACTGCAT+AGG | - | chr8.3:78632262-78632281 | None:intergenic | 35.0% | |
| GTATGTTGAAGACATAACTG+AGG | + | chr8.3:78633976-78633995 | MS.gene022735:CDS | 35.0% | |
| GTGTATGCAAGAGGATTAAT+GGG | - | chr8.3:78631553-78631572 | None:intergenic | 35.0% | |
| TCCTACTATACTGGAATTCT+CGG | + | chr8.3:78632040-78632059 | MS.gene022735:CDS | 35.0% | |
| TCCTATTTATACTGCATAGG+AGG | - | chr8.3:78632259-78632278 | None:intergenic | 35.0% | |
| TCCTCCTATGCAGTATAAAT+AGG | + | chr8.3:78632255-78632274 | MS.gene022735:intron | 35.0% | |
| TTACCCTTGCCAAAAGAAAA+TGG | + | chr8.3:78633320-78633339 | MS.gene022735:intron | 35.0% | |
| TTCATGAGATTCCTCATGAA+TGG | - | chr8.3:78631514-78631533 | None:intergenic | 35.0% | |
| TTCCAGTATAGTAGGAAAGT+GGG | - | chr8.3:78632036-78632055 | None:intergenic | 35.0% | |
| TTGATTTCAGTCTCATATGC+AGG | + | chr8.3:78632112-78632131 | MS.gene022735:intron | 35.0% | |
| ! | ATTTTCTTTTGGCAAGGGTA+AGG | - | chr8.3:78633321-78633340 | None:intergenic | 35.0% |
| ! | CATATATAAGCGGATTCGAA+TGG | + | chr8.3:78633868-78633887 | MS.gene022735:CDS | 35.0% |
| ! | GCTTTAACTTACAGATTGAG+GGG | - | chr8.3:78631575-78631594 | None:intergenic | 35.0% |
| ! | TACAGGTAATAGCAGGTTTT+GGG | + | chr8.3:78631879-78631898 | MS.gene022735:intron | 35.0% |
| ! | TTACAGGTAATAGCAGGTTT+TGG | + | chr8.3:78631878-78631897 | MS.gene022735:intron | 35.0% |
| ! | TTGCGTTTTTCTTTGAACAC+AGG | + | chr8.3:78632793-78632812 | MS.gene022735:intron | 35.0% |
| ! | TTTTCTTTTGGCAAGGGTAA+GGG | - | chr8.3:78633320-78633339 | None:intergenic | 35.0% |
| !! | AAGGAAGGTGATTTAGTTTG+GGG | + | chr8.3:78631938-78631957 | MS.gene022735:CDS | 35.0% |
| !! | AATTTAGTTTGTGCTGTGCA+TGG | + | chr8.3:78631659-78631678 | MS.gene022735:intron | 35.0% |
| !! | TATGCTGGTTTCTTTGAACT+AGG | + | chr8.3:78632835-78632854 | MS.gene022735:CDS | 35.0% |
| AAACTAGCTCCTTCGTGTAT+TGG | + | chr8.3:78632355-78632374 | MS.gene022735:intron | 40.0% | |
| AATCAGGATGTCCTGATTCA+AGG | - | chr8.3:78631916-78631935 | None:intergenic | 40.0% | |
| ACCGAGAATTCCAGTATAGT+AGG | - | chr8.3:78632044-78632063 | None:intergenic | 40.0% | |
| AGAGAAGTTATGCAGAGATG+TGG | - | chr8.3:78632656-78632675 | None:intergenic | 40.0% | |
| AGTTTGGGGATTCTGCAAAT+GGG | + | chr8.3:78631952-78631971 | MS.gene022735:CDS | 40.0% | |
| ATAACTGAGGGTCTTGAGAA+TGG | + | chr8.3:78633989-78634008 | MS.gene022735:CDS | 40.0% | |
| ATACTGAAGGACTATGTGTC+TGG | + | chr8.3:78631382-78631401 | MS.gene022735:CDS | 40.0% | |
| ATAGGTATAGTTGGCTGTAG+AGG | + | chr8.3:78632481-78632500 | MS.gene022735:intron | 40.0% | |
| CACTAATAATCAGCTACGGT+TGG | - | chr8.3:78632154-78632173 | None:intergenic | 40.0% | |
| CCTTGCCAAAAGAAAATGGA+GGG | + | chr8.3:78633324-78633343 | MS.gene022735:intron | 40.0% | |
| CGAAGAAAACCAATACACGA+AGG | - | chr8.3:78632367-78632386 | None:intergenic | 40.0% | |
| CTGACAGGATGTTATGTTGT+AGG | + | chr8.3:78632937-78632956 | MS.gene022735:CDS | 40.0% | |
| CTTCTGAATATGAGAGTCCA+TGG | + | chr8.3:78633770-78633789 | MS.gene022735:CDS | 40.0% | |
| GAACAAGCAAGTGATACTGA+AGG | + | chr8.3:78631369-78631388 | MS.gene022735:CDS | 40.0% | |
| GACAAATTCGTTACAGGTTC+AGG | - | chr8.3:78633842-78633861 | None:intergenic | 40.0% | |
| GGACATCCTGATTATAAGGA+AGG | + | chr8.3:78631923-78631942 | MS.gene022735:CDS | 40.0% | |
| GGTGTATGCAAGAGGATTAA+TGG | - | chr8.3:78631554-78631573 | None:intergenic | 40.0% | |
| GTATTCTGCACTGAACAGTT+TGG | + | chr8.3:78633560-78633579 | MS.gene022735:intron | 40.0% | |
| GTTGGTGTATTCTGTTAGCT+AGG | + | chr8.3:78632208-78632227 | MS.gene022735:intron | 40.0% | |
| TAGTTTGGGGATTCTGCAAA+TGG | + | chr8.3:78631951-78631970 | MS.gene022735:CDS | 40.0% | |
| TGTCTTGTGATCCATTCATG+AGG | + | chr8.3:78631500-78631519 | MS.gene022735:CDS | 40.0% | |
| ! | ACAGGTAATAGCAGGTTTTG+GGG | + | chr8.3:78631880-78631899 | MS.gene022735:intron | 40.0% |
| ! | ATAAGCGGATTCGAATGGAA+GGG | + | chr8.3:78633873-78633892 | MS.gene022735:CDS | 40.0% |
| ! | ATATGCAGGCCTTATCTGTT+AGG | + | chr8.3:78632126-78632145 | MS.gene022735:intron | 40.0% |
| ! | ATTTTCCCGTCTCTGATATG+AGG | - | chr8.3:78633953-78633972 | None:intergenic | 40.0% |
| ! | CAAATGGGAAGAGTACAGTT+TGG | + | chr8.3:78631967-78631986 | MS.gene022735:CDS | 40.0% |
| ! | CCTCCATTTTCTTTTGGCAA+GGG | - | chr8.3:78633326-78633345 | None:intergenic | 40.0% |
| ! | GAGTAAGTTAGGTTAGCTGT+TGG | + | chr8.3:78632190-78632209 | MS.gene022735:intron | 40.0% |
| ! | GTAGAGGATCCATTTTGTCA+TGG | + | chr8.3:78632497-78632516 | MS.gene022735:intron | 40.0% |
| ! | GTGTCTAAAGTCCTTGAATC+AGG | + | chr8.3:78631902-78631921 | MS.gene022735:CDS | 40.0% |
| ! | TATAAGCGGATTCGAATGGA+AGG | + | chr8.3:78633872-78633891 | MS.gene022735:CDS | 40.0% |
| ! | TCGCAATGTTGGTAAACAAG+TGG | + | chr8.3:78634042-78634061 | MS.gene022735:CDS | 40.0% |
| ! | TGTTATGTTGTAGGAAGTGC+TGG | + | chr8.3:78632946-78632965 | MS.gene022735:CDS | 40.0% |
| ! | TTTTCCCGTCTCTGATATGA+GGG | - | chr8.3:78633952-78633971 | None:intergenic | 40.0% |
| !! | AAGTGCTGGAAGTAAAGAGA+AGG | + | chr8.3:78632960-78632979 | MS.gene022735:CDS | 40.0% |
| !! | AGGGTTGATAAAGGCTAAAC+AGG | - | chr8.3:78632559-78632578 | None:intergenic | 40.0% |
| !! | GACAGTCTTGTTGCAGAATT+AGG | + | chr8.3:78632281-78632300 | MS.gene022735:intron | 40.0% |
| CAACATTGCGACCACTATAC+AGG | - | chr8.3:78634033-78634052 | None:intergenic | 45.0% | |
| CCAGCATAAGCAGTTATTCC+TGG | - | chr8.3:78632823-78632842 | None:intergenic | 45.0% | |
| CCAGGAATAACTGCTTATGC+TGG | + | chr8.3:78632820-78632839 | MS.gene022735:CDS | 45.0% | |
| CCCTTGCCAAAAGAAAATGG+AGG | + | chr8.3:78633323-78633342 | MS.gene022735:intron | 45.0% | |
| CTGTATAGTGGTCGCAATGT+TGG | + | chr8.3:78634031-78634050 | MS.gene022735:CDS | 45.0% | |
| CTTCACTAGGGTTTAAACCC+CGG | - | chr8.3:78633109-78633128 | None:intergenic | 45.0% | |
| GAACTAGGCAGTCCTAAGAA+AGG | + | chr8.3:78632850-78632869 | MS.gene022735:CDS | 45.0% | |
| GAGTATGCTCTAGTGAGAAG+AGG | + | chr8.3:78632332-78632351 | MS.gene022735:intron | 45.0% | |
| GGTCAATTCGCTAAACTGAC+AGG | + | chr8.3:78632922-78632941 | MS.gene022735:CDS | 45.0% | |
| GTCCCACTTTCCTACTATAC+TGG | + | chr8.3:78632031-78632050 | MS.gene022735:CDS | 45.0% | |
| TAGTATGTCACCGTCACCTT+GGG | + | chr8.3:78633015-78633034 | MS.gene022735:intron | 45.0% | |
| TCATTCCACAAGCAGGTATG+CGG | - | chr8.3:78633796-78633815 | None:intergenic | 45.0% | |
| TCTTTGAACACAGGTATGCC+AGG | + | chr8.3:78632802-78632821 | MS.gene022735:intron | 45.0% | |
| TGACGGAGGTTTCAACTACA+AGG | + | chr8.3:78633502-78633521 | MS.gene022735:CDS | 45.0% | |
| TGTGAGATCATTCCACAAGC+AGG | - | chr8.3:78633803-78633822 | None:intergenic | 45.0% | |
| TTAGTATGTCACCGTCACCT+TGG | + | chr8.3:78633014-78633033 | MS.gene022735:intron | 45.0% | |
| ! | AAGGTGACGGTGACATACTA+AGG | - | chr8.3:78633015-78633034 | None:intergenic | 45.0% |
| ! | CCCTCCATTTTCTTTTGGCA+AGG | - | chr8.3:78633327-78633346 | None:intergenic | 45.0% |
| ! | CGGTTGGTTCCTAACAGATA+AGG | - | chr8.3:78632138-78632157 | None:intergenic | 45.0% |
| !! | AATGGTCCTGCAGCATTGAT+TGG | + | chr8.3:78634007-78634026 | MS.gene022735:CDS | 45.0% |
| !! | GCATTGATTGGCCTGTATAG+TGG | + | chr8.3:78634019-78634038 | MS.gene022735:CDS | 45.0% |
| !! | GTTTTTGTTTCAGCTGCCTC+TGG | + | chr8.3:78632880-78632899 | MS.gene022735:CDS | 45.0% |
| ACCTCTTCAAAGCTGCATCG+AGG | - | chr8.3:78633538-78633557 | None:intergenic | 50.0% | |
| AGTATGTCACCGTCACCTTG+GGG | + | chr8.3:78633016-78633035 | MS.gene022735:intron | 50.0% | |
| CAAATCAGGCACTTCCCTGA+AGG | + | chr8.3:78633698-78633717 | MS.gene022735:intron | 50.0% | |
| CGGGGTTTAAACCCTAGTGA+AGG | + | chr8.3:78633107-78633126 | MS.gene022735:intron | 50.0% | |
| GGATTAATGGGAGCTCCTTG+TGG | - | chr8.3:78631541-78631560 | None:intergenic | 50.0% | |
| GTCCTCCCTCATATCAGAGA+CGG | + | chr8.3:78633944-78633963 | MS.gene022735:CDS | 50.0% | |
| TACAGGCCAATCAATGCTGC+AGG | - | chr8.3:78634016-78634035 | None:intergenic | 50.0% | |
| TCCTCCCTCATATCAGAGAC+GGG | + | chr8.3:78633945-78633964 | MS.gene022735:CDS | 50.0% | |
| TTCAAAGCTGCATCGAGGTC+AGG | - | chr8.3:78633533-78633552 | None:intergenic | 50.0% | |
| ! | GATTGAGGGGTGTATGCAAG+AGG | - | chr8.3:78631562-78631581 | None:intergenic | 50.0% |
| !! | ACCTCGATGCAGCTTTGAAG+AGG | + | chr8.3:78633534-78633553 | MS.gene022735:CDS | 50.0% |
| AAGTTGACCGACTGCACCAG+AGG | - | chr8.3:78632899-78632918 | None:intergenic | 55.0% | |
| CTACCCAATCCCCAAGGTGA+CGG | - | chr8.3:78633028-78633047 | None:intergenic | 55.0% | |
| GCTCAACTACCCAATCCCCA+AGG | - | chr8.3:78633034-78633053 | None:intergenic | 55.0% | |
| GGTGCAGTCGGTCAACTTGT+TGG | + | chr8.3:78632901-78632920 | MS.gene022735:CDS | 55.0% | |
| TCACCGTCACCTTGGGGATT+GGG | + | chr8.3:78633022-78633041 | MS.gene022735:intron | 55.0% | |
| TCCCGTCTCTGATATGAGGG+AGG | - | chr8.3:78633949-78633968 | None:intergenic | 55.0% | |
| CACAAGCAGGTATGCGGCCA+TGG | - | chr8.3:78633790-78633809 | None:intergenic | 60.0% | |
| CATGGCCGCATACCTGCTTG+TGG | + | chr8.3:78633788-78633807 | MS.gene022735:CDS | 60.0% | |
| GTCACCGTCACCTTGGGGAT+TGG | + | chr8.3:78633021-78633040 | MS.gene022735:intron | 60.0% | |
| TCAGCTGCCTCTGGTGCAGT+CGG | + | chr8.3:78632889-78632908 | MS.gene022735:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78631355 | 78634084 | 78631355 | ID=MS.gene022735 |
| chr8.3 | mRNA | 78631355 | 78634084 | 78631355 | ID=MS.gene022735.t1;Parent=MS.gene022735 |
| chr8.3 | exon | 78631355 | 78631582 | 78631355 | ID=MS.gene022735.t1.exon1;Parent=MS.gene022735.t1 |
| chr8.3 | CDS | 78631355 | 78631582 | 78631355 | ID=cds.MS.gene022735.t1;Parent=MS.gene022735.t1 |
| chr8.3 | exon | 78631884 | 78632061 | 78631884 | ID=MS.gene022735.t1.exon2;Parent=MS.gene022735.t1 |
| chr8.3 | CDS | 78631884 | 78632061 | 78631884 | ID=cds.MS.gene022735.t1;Parent=MS.gene022735.t1 |
| chr8.3 | exon | 78632815 | 78632981 | 78632815 | ID=MS.gene022735.t1.exon3;Parent=MS.gene022735.t1 |
| chr8.3 | CDS | 78632815 | 78632981 | 78632815 | ID=cds.MS.gene022735.t1;Parent=MS.gene022735.t1 |
| chr8.3 | exon | 78633473 | 78633555 | 78633473 | ID=MS.gene022735.t1.exon4;Parent=MS.gene022735.t1 |
| chr8.3 | CDS | 78633473 | 78633555 | 78633473 | ID=cds.MS.gene022735.t1;Parent=MS.gene022735.t1 |
| chr8.3 | exon | 78633706 | 78634084 | 78633706 | ID=MS.gene022735.t1.exon5;Parent=MS.gene022735.t1 |
| chr8.3 | CDS | 78633706 | 78634084 | 78633706 | ID=cds.MS.gene022735.t1;Parent=MS.gene022735.t1 |
| Gene Sequence |
| Protein sequence |
