Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022736.t1 | ACJ85436.1 | 93.9 | 344 | 12 | 1 | 1 | 335 | 1 | 344 | 2.60E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022736.t1 | Q39173 | 68.9 | 341 | 94 | 4 | 6 | 335 | 4 | 343 | 1.1e-133 | 477.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022736.t1 | B7FL02 | 93.9 | 344 | 12 | 1 | 1 | 335 | 1 | 344 | 1.9e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08162 | MS.gene022736 | PPI |
| MS.gene41778 | MS.gene022736 | PPI |
| MS.gene020033 | MS.gene022736 | PPI |
| MS.gene022735 | MS.gene022736 | PPI |
| MS.gene020225 | MS.gene022736 | PPI |
| MS.gene39314 | MS.gene022736 | PPI |
| MS.gene45375 | MS.gene022736 | PPI |
| MS.gene022721 | MS.gene022736 | PPI |
| MS.gene022722 | MS.gene022736 | PPI |
| MS.gene54433 | MS.gene022736 | PPI |
| MS.gene97874 | MS.gene022736 | PPI |
| MS.gene042467 | MS.gene022736 | PPI |
| MS.gene020226 | MS.gene022736 | PPI |
| MS.gene022736 | MS.gene022735 | PPI |
| MS.gene020077 | MS.gene022736 | PPI |
| MS.gene069341 | MS.gene022736 | PPI |
| MS.gene022738 | MS.gene022736 | PPI |
| MS.gene020228 | MS.gene022736 | PPI |
| MS.gene020076 | MS.gene022736 | PPI |
| MS.gene39327 | MS.gene022736 | PPI |
| MS.gene022737 | MS.gene022736 | PPI |
| MS.gene022736 | MS.gene020227 | PPI |
| MS.gene39312 | MS.gene022736 | PPI |
| MS.gene020227 | MS.gene022736 | PPI |
| MS.gene39326 | MS.gene022736 | PPI |
| MS.gene022736 | MS.gene45375 | PPI |
| MS.gene39313 | MS.gene022736 | PPI |
| MS.gene067859 | MS.gene022736 | PPI |
| MS.gene39315 | MS.gene022736 | PPI |
| MS.gene54434 | MS.gene022736 | PPI |
| MS.gene020239 | MS.gene022736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022736.t1 | MTR_8g010000 | 91.642 | 335 | 12 | 1 | 1 | 335 | 1 | 319 | 0.0 | 620 |
| MS.gene022736.t1 | MTR_8g010030 | 83.430 | 344 | 48 | 1 | 1 | 335 | 1 | 344 | 0.0 | 597 |
| MS.gene022736.t1 | MTR_8g009820 | 79.420 | 345 | 59 | 3 | 1 | 335 | 60 | 402 | 0.0 | 557 |
| MS.gene022736.t1 | MTR_8g010020 | 80.814 | 344 | 25 | 2 | 1 | 335 | 1 | 312 | 0.0 | 553 |
| MS.gene022736.t1 | MTR_8g009840 | 77.581 | 339 | 63 | 4 | 1 | 329 | 1 | 336 | 0.0 | 539 |
| MS.gene022736.t1 | MTR_8g009980 | 74.783 | 345 | 76 | 3 | 1 | 335 | 1 | 344 | 0.0 | 538 |
| MS.gene022736.t1 | MTR_8g009830 | 74.783 | 345 | 74 | 4 | 1 | 335 | 1 | 342 | 0.0 | 528 |
| MS.gene022736.t1 | MTR_4g082970 | 63.158 | 342 | 115 | 3 | 4 | 335 | 10 | 350 | 4.80e-150 | 426 |
| MS.gene022736.t1 | MTR_7g406860 | 55.652 | 345 | 142 | 3 | 1 | 335 | 3 | 346 | 1.67e-131 | 379 |
| MS.gene022736.t1 | MTR_8g007325 | 76.364 | 220 | 40 | 3 | 1 | 210 | 1 | 218 | 5.71e-118 | 340 |
| MS.gene022736.t1 | MTR_0011s0280 | 43.353 | 346 | 182 | 3 | 3 | 335 | 2 | 346 | 1.63e-101 | 302 |
| MS.gene022736.t1 | MTR_2g088190 | 39.130 | 345 | 192 | 6 | 4 | 332 | 5 | 347 | 2.19e-73 | 231 |
| MS.gene022736.t1 | MTR_2g088220 | 39.067 | 343 | 195 | 5 | 4 | 332 | 6 | 348 | 3.13e-68 | 218 |
| MS.gene022736.t1 | MTR_2g088200 | 36.782 | 348 | 197 | 7 | 4 | 332 | 5 | 348 | 7.79e-63 | 203 |
| MS.gene022736.t1 | MTR_5g095030 | 54.688 | 128 | 58 | 0 | 206 | 333 | 9 | 136 | 2.79e-46 | 154 |
| MS.gene022736.t1 | MTR_4g086410 | 34.928 | 209 | 119 | 5 | 139 | 332 | 416 | 622 | 3.44e-22 | 97.8 |
| MS.gene022736.t1 | MTR_4g086400 | 33.649 | 211 | 119 | 6 | 139 | 332 | 276 | 482 | 1.42e-21 | 95.5 |
| MS.gene022736.t1 | MTR_4g086400 | 33.649 | 211 | 119 | 6 | 139 | 332 | 416 | 622 | 1.71e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022736.t1 | AT5G16990 | 68.915 | 341 | 94 | 4 | 6 | 335 | 4 | 343 | 5.07e-173 | 484 |
| MS.gene022736.t1 | AT5G16970 | 67.836 | 342 | 97 | 4 | 6 | 335 | 5 | 345 | 4.71e-172 | 481 |
| MS.gene022736.t1 | AT5G17000 | 68.129 | 342 | 96 | 4 | 6 | 335 | 5 | 345 | 1.03e-170 | 478 |
| MS.gene022736.t1 | AT3G03080 | 67.341 | 346 | 99 | 4 | 2 | 335 | 7 | 350 | 5.94e-169 | 474 |
| MS.gene022736.t1 | AT1G26320 | 66.860 | 344 | 101 | 4 | 4 | 335 | 9 | 351 | 1.24e-163 | 460 |
| MS.gene022736.t1 | AT1G26320 | 67.257 | 339 | 103 | 4 | 4 | 335 | 9 | 346 | 1.71e-162 | 457 |
| MS.gene022736.t1 | AT5G37980 | 64.244 | 344 | 107 | 5 | 6 | 335 | 12 | 353 | 8.14e-160 | 451 |
| MS.gene022736.t1 | AT5G37940 | 62.391 | 343 | 115 | 4 | 6 | 335 | 12 | 353 | 3.58e-156 | 442 |
| MS.gene022736.t1 | AT5G16960 | 62.319 | 345 | 117 | 4 | 1 | 333 | 1 | 344 | 7.13e-155 | 438 |
| MS.gene022736.t1 | AT5G16960 | 62.319 | 345 | 117 | 4 | 1 | 333 | 1 | 344 | 7.13e-155 | 438 |
| MS.gene022736.t1 | AT5G38000 | 61.516 | 343 | 116 | 5 | 6 | 334 | 12 | 352 | 1.92e-152 | 432 |
| MS.gene022736.t1 | AT5G38000 | 60.059 | 338 | 116 | 6 | 6 | 326 | 12 | 347 | 5.86e-145 | 413 |
| MS.gene022736.t1 | AT3G59845 | 60.465 | 344 | 120 | 6 | 4 | 333 | 5 | 346 | 2.39e-142 | 406 |
| MS.gene022736.t1 | AT5G38000 | 58.309 | 343 | 108 | 6 | 6 | 334 | 12 | 333 | 2.61e-138 | 395 |
| MS.gene022736.t1 | AT1G65560 | 56.069 | 346 | 136 | 6 | 4 | 335 | 7 | 350 | 6.39e-129 | 372 |
| MS.gene022736.t1 | AT5G16980 | 55.523 | 344 | 105 | 4 | 1 | 335 | 1 | 305 | 1.61e-128 | 370 |
| MS.gene022736.t1 | AT5G16980 | 71.806 | 227 | 55 | 1 | 118 | 335 | 13 | 239 | 1.49e-117 | 339 |
| MS.gene022736.t1 | AT5G16980 | 71.806 | 227 | 55 | 1 | 118 | 335 | 13 | 239 | 1.49e-117 | 339 |
| MS.gene022736.t1 | AT3G59845 | 65.306 | 245 | 74 | 3 | 99 | 333 | 1 | 244 | 7.06e-108 | 315 |
| MS.gene022736.t1 | AT1G65560 | 57.196 | 271 | 103 | 3 | 78 | 335 | 4 | 274 | 3.81e-104 | 306 |
| MS.gene022736.t1 | AT5G17000 | 65.438 | 217 | 62 | 4 | 6 | 210 | 5 | 220 | 3.77e-98 | 290 |
| MS.gene022736.t1 | AT1G49670 | 33.649 | 211 | 119 | 6 | 139 | 332 | 412 | 618 | 9.21e-21 | 93.6 |
| MS.gene022736.t1 | AT5G37960 | 53.247 | 77 | 36 | 0 | 254 | 330 | 25 | 101 | 2.95e-20 | 85.1 |
| MS.gene022736.t1 | AT1G49670 | 33.659 | 205 | 115 | 6 | 145 | 332 | 441 | 641 | 2.04e-19 | 89.7 |
Find 73 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTCTTCTTTGTAGTTAA+TGG | 0.122574 | 8.3:-78629565 | None:intergenic |
| GATCTGTTGAAGAATAAATT+TGG | 0.232879 | 8.3:+78629531 | MS.gene022736:CDS |
| CGTGGATTGATAGATGCTTT+TGG | 0.268838 | 8.3:-78627560 | None:intergenic |
| TCCTACTATACTGGAGTTCT+AGG | 0.294178 | 8.3:+78628360 | MS.gene022736:CDS |
| AACCATGCAATTTGGCGAAT+TGG | 0.308933 | 8.3:-78628924 | None:intergenic |
| TTTCAGCCGTTAACTGGTTA+TGG | 0.313356 | 8.3:+78628198 | MS.gene022736:intron |
| ACAACATCGTTGGAACCTTC+TGG | 0.323062 | 8.3:-78627479 | None:intergenic |
| AATATGCCAACCAAGGCTTC+AGG | 0.325576 | 8.3:-78630053 | None:intergenic |
| AAGTAAACATCAATGCCTTC+TGG | 0.327094 | 8.3:-78629753 | None:intergenic |
| GCTGTATAGATGATAGTAAT+TGG | 0.330006 | 8.3:-78629946 | None:intergenic |
| ATCTGAACACAAAGATTATA+AGG | 0.335851 | 8.3:+78628239 | MS.gene022736:CDS |
| TCGTAATTTCAGCCGTTAAC+TGG | 0.342310 | 8.3:+78628192 | MS.gene022736:intron |
| TCATCTATACAGCAAATTCT+TGG | 0.348074 | 8.3:+78629956 | MS.gene022736:CDS |
| ATGTTGAGGTCTGATTCTTT+AGG | 0.350907 | 8.3:-78627428 | None:intergenic |
| CTTCTGAAACATTATGTGTC+TGG | 0.389777 | 8.3:+78627401 | MS.gene022736:CDS |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.392209 | 8.3:+78628901 | MS.gene022736:CDS |
| GTTCCTCTTTCCTACTATAC+TGG | 0.394850 | 8.3:+78628351 | MS.gene022736:CDS |
| AACGTAGCAACCATGCAATT+TGG | 0.396664 | 8.3:-78628932 | None:intergenic |
| TTCTGGAATCTTAAGAGTTA+TGG | 0.398031 | 8.3:-78627462 | None:intergenic |
| CCAGCATAAGCAGTCATTCC+TGG | 0.404051 | 8.3:-78628820 | None:intergenic |
| GACACACCATAACCAGTTAA+CGG | 0.422138 | 8.3:-78628204 | None:intergenic |
| GCCTTGGTTGGCATATTTAG+TGG | 0.423385 | 8.3:+78630059 | MS.gene022736:CDS |
| AGAAGGGAAGGTTGTGTATG+TGG | 0.430397 | 8.3:+78630001 | MS.gene022736:CDS |
| AGCCATAAACTTACAGATTG+AGG | 0.442715 | 8.3:-78627593 | None:intergenic |
| AGGTTCCAACGATGTTGTAT+TGG | 0.452549 | 8.3:+78627484 | MS.gene022736:CDS |
| TCTTTGAGTGCAGGTATGCC+AGG | 0.460876 | 8.3:+78628802 | MS.gene022736:intron |
| ATATGCCAACCAAGGCTTCA+GGG | 0.469173 | 8.3:-78630052 | None:intergenic |
| TTTAACCAATACAACATCGT+TGG | 0.470295 | 8.3:-78627489 | None:intergenic |
| TACAATCTTACTCAACTTGA+AGG | 0.471592 | 8.3:+78629864 | MS.gene022736:CDS |
| TATAAGCGGGTTCGTTTGCA+AGG | 0.473653 | 8.3:+78629912 | MS.gene022736:CDS |
| CTCATAAGAGTCCTCATGTA+AGG | 0.474115 | 8.3:-78627533 | None:intergenic |
| TATGCTGGTTTCTTTGAAGT+AGG | 0.475286 | 8.3:+78628835 | MS.gene022736:CDS |
| TGAGAAAGGCCCTGAAGCCT+TGG | 0.477909 | 8.3:+78630043 | MS.gene022736:CDS |
| TCAGCTGCCTCTGGTGCAGT+TGG | 0.486180 | 8.3:+78628889 | MS.gene022736:CDS |
| TTGAAATGTATTTGAGCCGC+AGG | 0.496347 | 8.3:-78628312 | None:intergenic |
| ACCTAGAACTCCAGTATAGT+AGG | 0.498495 | 8.3:-78628361 | None:intergenic |
| GAAGTAGGCGCTACCAAGAA+AGG | 0.498938 | 8.3:+78628850 | MS.gene022736:CDS |
| CCAGGAATGACTGCTTATGC+TGG | 0.502390 | 8.3:+78628820 | MS.gene022736:CDS |
| AGCACATATCGTATATAAGC+GGG | 0.502996 | 8.3:+78629899 | MS.gene022736:CDS |
| ACCTCAATGCAACATTGAAA+AGG | 0.521080 | 8.3:+78629589 | MS.gene022736:CDS |
| TAAGGAAGGTGATATAGTGT+GGG | 0.522542 | 8.3:+78628257 | MS.gene022736:CDS |
| ATAAGGAAGGTGATATAGTG+TGG | 0.533080 | 8.3:+78628256 | MS.gene022736:CDS |
| ATAGCTGAGGGTCTTGAGAA+AGG | 0.540813 | 8.3:+78630029 | MS.gene022736:CDS |
| GTTTACTTTGAGAACGTTGG+AGG | 0.547671 | 8.3:+78629768 | MS.gene022736:CDS |
| ACTTACAGATTGAGGAACAT+AGG | 0.548541 | 8.3:-78627585 | None:intergenic |
| TCCCTTCTCTGATACGAGGC+AGG | 0.554222 | 8.3:-78629986 | None:intergenic |
| CTCTTGAATATGAAAGTGCT+TGG | 0.556442 | 8.3:+78629810 | MS.gene022736:CDS |
| GAACACAAAGATTATAAGGA+AGG | 0.565010 | 8.3:+78628243 | MS.gene022736:CDS |
| ACTCCAGTATAGTAGGAAAG+AGG | 0.571694 | 8.3:-78628354 | None:intergenic |
| AAAGGCCCTGAAGCCTTGGT+TGG | 0.572741 | 8.3:+78630047 | MS.gene022736:CDS |
| GATGTTTACTTTGAGAACGT+TGG | 0.576272 | 8.3:+78629765 | MS.gene022736:CDS |
| GTCCTGCCTCGTATCAGAGA+AGG | 0.579424 | 8.3:+78629984 | MS.gene022736:CDS |
| GCCTCGTATCAGAGAAGGGA+AGG | 0.580164 | 8.3:+78629989 | MS.gene022736:CDS |
| GGCCAATTCGCCAAATTGCA+TGG | 0.580690 | 8.3:+78628922 | MS.gene022736:CDS |
| GCCACTAAATATGCCAACCA+AGG | 0.582332 | 8.3:-78630060 | None:intergenic |
| TTATGGTGTGTCTAAAGTTG+TGG | 0.587703 | 8.3:+78628215 | MS.gene022736:CDS |
| ATAACTCTTAAGATTCCAGA+AGG | 0.595274 | 8.3:+78627464 | MS.gene022736:CDS |
| TTAATTAGGCACTTTCCAGA+AGG | 0.598364 | 8.3:+78629738 | MS.gene022736:intron |
| AAGGAAGGTGATATAGTGTG+GGG | 0.603651 | 8.3:+78628258 | MS.gene022736:CDS |
| TCCTGCCTCGTATCAGAGAA+GGG | 0.605584 | 8.3:+78629985 | MS.gene022736:CDS |
| TGGTACTGTCAACAATGTTG+AGG | 0.627893 | 8.3:-78627442 | None:intergenic |
| AAGTTGACCAACTGCACCAG+AGG | 0.637825 | 8.3:-78628896 | None:intergenic |
| TGAAATGTATTTGAGCCGCA+GGG | 0.641592 | 8.3:-78628311 | None:intergenic |
| TAGCACATATCGTATATAAG+CGG | 0.655907 | 8.3:+78629898 | MS.gene022736:CDS |
| AGGAAGGTGATATAGTGTGG+GGG | 0.659217 | 8.3:+78628259 | MS.gene022736:CDS |
| CTTGGTCGCATACCTGTGTG+TGG | 0.659301 | 8.3:+78629828 | MS.gene022736:CDS |
| TGTCTTGTGATCCTTACATG+AGG | 0.664048 | 8.3:+78627522 | MS.gene022736:CDS |
| TGTGAGATCATTCCACACAC+AGG | 0.692179 | 8.3:-78629840 | None:intergenic |
| ACCTTCCCTTCTCTGATACG+AGG | 0.702118 | 8.3:-78629990 | None:intergenic |
| GATTGAGGAACATAGGCACG+TGG | 0.744035 | 8.3:-78627578 | None:intergenic |
| GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:+78630016 | MS.gene022736:CDS |
| TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:+78630017 | MS.gene022736:CDS |
| AGAGTACAGCTTGATCCCTG+CGG | 0.754975 | 8.3:+78628296 | MS.gene022736:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTGAAAAATATTAATAT+AGG | - | chr8.3:78628566-78628585 | None:intergenic | 10.0% |
| !! | TTGAAATTTGTAATAAAATT+AGG | - | chr8.3:78629270-78629289 | None:intergenic | 10.0% |
| !! | AGACATATATATTTAAGTAA+AGG | - | chr8.3:78629497-78629516 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTCTACTTTA+AGG | - | chr8.3:78627649-78627668 | None:intergenic | 15.0% |
| !! | GATATCAATTTATGTTAATT+AGG | + | chr8.3:78629724-78629743 | MS.gene022736:intron | 15.0% |
| !!! | AGAGTTTTTTATATGTAAAT+TGG | + | chr8.3:78627655-78627674 | MS.gene022736:intron | 15.0% |
| !! | AAAAACATCATAATAACTTG+AGG | - | chr8.3:78628436-78628455 | None:intergenic | 20.0% |
| !! | AATTTGACAAATACTGAAAA+GGG | - | chr8.3:78627623-78627642 | None:intergenic | 20.0% |
| !! | ACATGTGTTAAAGAAAAAAA+AGG | + | chr8.3:78627935-78627954 | MS.gene022736:intron | 20.0% |
| !! | CATAGAAAATTATGTTTCTT+TGG | + | chr8.3:78628026-78628045 | MS.gene022736:intron | 20.0% |
| !! | CATGTGTTAAAGAAAAAAAA+GGG | + | chr8.3:78627936-78627955 | MS.gene022736:intron | 20.0% |
| !! | TAATTTGACAAATACTGAAA+AGG | - | chr8.3:78627624-78627643 | None:intergenic | 20.0% |
| !! | TATCATCAGTTTCAAATAAA+AGG | - | chr8.3:78628628-78628647 | None:intergenic | 20.0% |
| !!! | AAGAATAATTTGCTAAGAAA+TGG | - | chr8.3:78627742-78627761 | None:intergenic | 20.0% |
| !!! | TAGGTTTACAATTTTGATTT+TGG | + | chr8.3:78627710-78627729 | MS.gene022736:intron | 20.0% |
| !!! | TATTTTTGTTGAGAATTTGA+AGG | + | chr8.3:78628057-78628076 | MS.gene022736:intron | 20.0% |
| !!! | TTGAACTACTCTTAATTTTT+AGG | + | chr8.3:78629364-78629383 | MS.gene022736:intron | 20.0% |
| ! | AAGAAAAACACATGTCAAAA+AGG | - | chr8.3:78628786-78628805 | None:intergenic | 25.0% |
| ! | AGAAAAGATTATAAGAGAAG+CGG | - | chr8.3:78628677-78628696 | None:intergenic | 25.0% |
| ! | AGAAAATTATGTTTCTTTGG+TGG | + | chr8.3:78628029-78628048 | MS.gene022736:intron | 25.0% |
| ! | ATATTTAGTGGCAAAAATGT+TGG | + | chr8.3:78630071-78630090 | MS.gene022736:CDS | 25.0% |
| ! | ATCTACAATATCAACAATCA+AGG | + | chr8.3:78629185-78629204 | MS.gene022736:intron | 25.0% |
| ! | ATCTGAACACAAAGATTATA+AGG | + | chr8.3:78628239-78628258 | MS.gene022736:CDS | 25.0% |
| ! | GAAAATTATGTTTCTTTGGT+GGG | + | chr8.3:78628030-78628049 | MS.gene022736:intron | 25.0% |
| ! | GATCTGTTGAAGAATAAATT+TGG | + | chr8.3:78629531-78629550 | MS.gene022736:CDS | 25.0% |
| ! | TACTAGTTCAATATGCTTAT+TGG | + | chr8.3:78629642-78629661 | MS.gene022736:intron | 25.0% |
| ! | TCAATGAAAAGACACAAAAA+TGG | - | chr8.3:78629452-78629471 | None:intergenic | 25.0% |
| ! | TGATTGTTGATATTGTAGAT+AGG | - | chr8.3:78629185-78629204 | None:intergenic | 25.0% |
| ! | TGTATGATTATAGAGAAGAA+TGG | + | chr8.3:78628385-78628404 | MS.gene022736:intron | 25.0% |
| ! | TTCTAGTCAATTTACAAACT+CGG | + | chr8.3:78627870-78627889 | MS.gene022736:intron | 25.0% |
| !! | CTTCTCTTATAATCTTTTCT+TGG | + | chr8.3:78628677-78628696 | MS.gene022736:intron | 25.0% |
| AAAAACATTCTCTCCTTTCT+TGG | - | chr8.3:78628866-78628885 | None:intergenic | 30.0% | |
| AAACAACTCTTTCACACAAT+AGG | - | chr8.3:78628524-78628543 | None:intergenic | 30.0% | |
| AAATTGAAGAGAATTGTACC+AGG | + | chr8.3:78629319-78629338 | MS.gene022736:intron | 30.0% | |
| ACACAAATTAGTCACCAAAA+TGG | - | chr8.3:78627915-78627934 | None:intergenic | 30.0% | |
| ATAACTCTTAAGATTCCAGA+AGG | + | chr8.3:78627464-78627483 | MS.gene022736:CDS | 30.0% | |
| ATTTACAAACTCGGATTCTT+TGG | + | chr8.3:78627879-78627898 | MS.gene022736:intron | 30.0% | |
| CAACTGTGCAAATATTATTC+TGG | - | chr8.3:78629347-78629366 | None:intergenic | 30.0% | |
| CTTGTTCAACAAAGGATATA+CGG | + | chr8.3:78628592-78628611 | MS.gene022736:intron | 30.0% | |
| GAACACAAAGATTATAAGGA+AGG | + | chr8.3:78628243-78628262 | MS.gene022736:CDS | 30.0% | |
| GCTGTATAGATGATAGTAAT+TGG | - | chr8.3:78629949-78629968 | None:intergenic | 30.0% | |
| TACAATCTTACTCAACTTGA+AGG | + | chr8.3:78629864-78629883 | MS.gene022736:CDS | 30.0% | |
| TAGCACATATCGTATATAAG+CGG | + | chr8.3:78629898-78629917 | MS.gene022736:CDS | 30.0% | |
| TCATCTATACAGCAAATTCT+TGG | + | chr8.3:78629956-78629975 | MS.gene022736:CDS | 30.0% | |
| TGGTACAATTCTCTTCAATT+TGG | - | chr8.3:78629320-78629339 | None:intergenic | 30.0% | |
| TGTCTTATCTTGTTCAACAA+AGG | + | chr8.3:78628584-78628603 | MS.gene022736:intron | 30.0% | |
| TTCCTCAATCTGTAAGTTTA+TGG | + | chr8.3:78627591-78627610 | MS.gene022736:intron | 30.0% | |
| TTGCTCTTCTTTGTAGTTAA+TGG | - | chr8.3:78629568-78629587 | None:intergenic | 30.0% | |
| TTGTTTAGTATCGTTACAGA+CGG | + | chr8.3:78628478-78628497 | MS.gene022736:intron | 30.0% | |
| TTTAACCAATACAACATCGT+TGG | - | chr8.3:78627492-78627511 | None:intergenic | 30.0% | |
| ! | AAATTGGTCTCTTCATCATA+TGG | + | chr8.3:78627671-78627690 | MS.gene022736:intron | 30.0% |
| ! | AAGACACAAAAATGGATTTC+TGG | - | chr8.3:78629444-78629463 | None:intergenic | 30.0% |
| ! | AATTGGTCTCTTCATCATAT+GGG | + | chr8.3:78627672-78627691 | MS.gene022736:intron | 30.0% |
| ! | AGACACAAAAATGGATTTCT+GGG | - | chr8.3:78629443-78629462 | None:intergenic | 30.0% |
| ! | TTGGAAAATTGGAACCATTT+TGG | + | chr8.3:78627898-78627917 | MS.gene022736:intron | 30.0% |
| !! | ATGAATGTTTTGTTGTAACC+TGG | + | chr8.3:78629389-78629408 | MS.gene022736:intron | 30.0% |
| !! | TTCTGGAATCTTAAGAGTTA+TGG | - | chr8.3:78627465-78627484 | None:intergenic | 30.0% |
| !!! | TGTTTTAACTCTCTAGTTCT+TGG | + | chr8.3:78627785-78627804 | MS.gene022736:intron | 30.0% |
| AAGTAAACATCAATGCCTTC+TGG | - | chr8.3:78629756-78629775 | None:intergenic | 35.0% | |
| ACAATAGGTTTCTATCCTGA+TGG | - | chr8.3:78628509-78628528 | None:intergenic | 35.0% | |
| ACCTCAATGCAACATTGAAA+AGG | + | chr8.3:78629589-78629608 | MS.gene022736:CDS | 35.0% | |
| ACTTACAGATTGAGGAACAT+AGG | - | chr8.3:78627588-78627607 | None:intergenic | 35.0% | |
| AGCACATATCGTATATAAGC+GGG | + | chr8.3:78629899-78629918 | MS.gene022736:CDS | 35.0% | |
| AGCCATAAACTTACAGATTG+AGG | - | chr8.3:78627596-78627615 | None:intergenic | 35.0% | |
| ATAAGGAAGGTGATATAGTG+TGG | + | chr8.3:78628256-78628275 | MS.gene022736:CDS | 35.0% | |
| ATGTTGAGGTCTGATTCTTT+AGG | - | chr8.3:78627431-78627450 | None:intergenic | 35.0% | |
| ATTACACTGACATTGATCGA+AGG | + | chr8.3:78629123-78629142 | MS.gene022736:intron | 35.0% | |
| GAAAGAGTTGTTTGTTTGTC+TGG | + | chr8.3:78628531-78628550 | MS.gene022736:intron | 35.0% | |
| TAAGGAAGGTGATATAGTGT+GGG | + | chr8.3:78628257-78628276 | MS.gene022736:CDS | 35.0% | |
| TATATATGTCTCTTGCTACC+AGG | + | chr8.3:78629506-78629525 | MS.gene022736:intron | 35.0% | |
| TGTTTAGTATCGTTACAGAC+GGG | + | chr8.3:78628479-78628498 | MS.gene022736:intron | 35.0% | |
| TTAATTAGGCACTTTCCAGA+AGG | + | chr8.3:78629738-78629757 | MS.gene022736:intron | 35.0% | |
| ! | ACCTTTTCAATGTTGCATTG+AGG | - | chr8.3:78629593-78629612 | None:intergenic | 35.0% |
| ! | ACTCGGATTCTTTGGAAAAT+TGG | + | chr8.3:78627887-78627906 | MS.gene022736:intron | 35.0% |
| ! | ATGTGTTTTTCTTTGAGTGC+AGG | + | chr8.3:78628793-78628812 | MS.gene022736:intron | 35.0% |
| ! | GACACAAAAATGGATTTCTG+GGG | - | chr8.3:78629442-78629461 | None:intergenic | 35.0% |
| ! | GATGTTTACTTTGAGAACGT+TGG | + | chr8.3:78629765-78629784 | MS.gene022736:CDS | 35.0% |
| ! | TCATACTCTTTTCCTTTTCC+AGG | - | chr8.3:78629410-78629429 | None:intergenic | 35.0% |
| ! | TTATGGTGTGTCTAAAGTTG+TGG | + | chr8.3:78628215-78628234 | MS.gene022736:CDS | 35.0% |
| !! | CTCTTGAATATGAAAGTGCT+TGG | + | chr8.3:78629810-78629829 | MS.gene022736:CDS | 35.0% |
| !! | CTTCTGAAACATTATGTGTC+TGG | + | chr8.3:78627401-78627420 | MS.gene022736:CDS | 35.0% |
| !! | GCAAATATTATTCTGGTTCC+TGG | - | chr8.3:78629340-78629359 | None:intergenic | 35.0% |
| !! | GTGGATTGATAGATGCTTTT+GGG | - | chr8.3:78627562-78627581 | None:intergenic | 35.0% |
| !! | GTTTTGTTGTAACCTGGAAA+AGG | + | chr8.3:78629395-78629414 | MS.gene022736:intron | 35.0% |
| !! | TATGCTGGTTTCTTTGAAGT+AGG | + | chr8.3:78628835-78628854 | MS.gene022736:CDS | 35.0% |
| !! | TGGGTCAATTTGTTGTTAGT+AGG | + | chr8.3:78627691-78627710 | MS.gene022736:intron | 35.0% |
| AACCATGCAATTTGGCGAAT+TGG | - | chr8.3:78628927-78628946 | None:intergenic | 40.0% | |
| AACGTAGCAACCATGCAATT+TGG | - | chr8.3:78628935-78628954 | None:intergenic | 40.0% | |
| AAGGAAGGTGATATAGTGTG+GGG | + | chr8.3:78628258-78628277 | MS.gene022736:CDS | 40.0% | |
| ACCTAGAACTCCAGTATAGT+AGG | - | chr8.3:78628364-78628383 | None:intergenic | 40.0% | |
| ACTCCAGTATAGTAGGAAAG+AGG | - | chr8.3:78628357-78628376 | None:intergenic | 40.0% | |
| AGGTTCCAACGATGTTGTAT+TGG | + | chr8.3:78627484-78627503 | MS.gene022736:CDS | 40.0% | |
| AGTGTGGGGGATAACTAATT+GGG | + | chr8.3:78628272-78628291 | MS.gene022736:CDS | 40.0% | |
| AGTTACCACGTTTAGCAACA+CGG | + | chr8.3:78629678-78629697 | MS.gene022736:intron | 40.0% | |
| CTCATAAGAGTCCTCATGTA+AGG | - | chr8.3:78627536-78627555 | None:intergenic | 40.0% | |
| GACACACCATAACCAGTTAA+CGG | - | chr8.3:78628207-78628226 | None:intergenic | 40.0% | |
| GTTCCTCTTTCCTACTATAC+TGG | + | chr8.3:78628351-78628370 | MS.gene022736:CDS | 40.0% | |
| TAGTGTGGGGGATAACTAAT+TGG | + | chr8.3:78628271-78628290 | MS.gene022736:CDS | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | + | chr8.3:78630017-78630036 | MS.gene022736:CDS | 40.0% | |
| TATTCTTCAACAGATCCACC+TGG | - | chr8.3:78629527-78629546 | None:intergenic | 40.0% | |
| TCCTACTATACTGGAGTTCT+AGG | + | chr8.3:78628360-78628379 | MS.gene022736:CDS | 40.0% | |
| TCGTAATTTCAGCCGTTAAC+TGG | + | chr8.3:78628192-78628211 | MS.gene022736:intron | 40.0% | |
| TGAAATGTATTTGAGCCGCA+GGG | - | chr8.3:78628314-78628333 | None:intergenic | 40.0% | |
| TGGTACTGTCAACAATGTTG+AGG | - | chr8.3:78627445-78627464 | None:intergenic | 40.0% | |
| TGTCCTAGTAATCCGCAATT+TGG | + | chr8.3:78627815-78627834 | MS.gene022736:intron | 40.0% | |
| TGTCTTGTGATCCTTACATG+AGG | + | chr8.3:78627522-78627541 | MS.gene022736:CDS | 40.0% | |
| TGTTTGTTTGTCTGGCTGTT+TGG | + | chr8.3:78628539-78628558 | MS.gene022736:intron | 40.0% | |
| TTCAGTGTCTTACTCTGACA+CGG | + | chr8.3:78629061-78629080 | MS.gene022736:intron | 40.0% | |
| TTGAAATGTATTTGAGCCGC+AGG | - | chr8.3:78628315-78628334 | None:intergenic | 40.0% | |
| TTGAGGCTTGCATATCATAC+TGG | - | chr8.3:78628419-78628438 | None:intergenic | 40.0% | |
| TTTCAGCCGTTAACTGGTTA+TGG | + | chr8.3:78628198-78628217 | MS.gene022736:intron | 40.0% | |
| ! | CAATCAAGGTTTTTGCTCAC+TGG | + | chr8.3:78629199-78629218 | MS.gene022736:intron | 40.0% |
| ! | GTTTACTTTGAGAACGTTGG+AGG | + | chr8.3:78629768-78629787 | MS.gene022736:CDS | 40.0% |
| ! | TGAGAATTTGAAGGAAGTGC+TGG | + | chr8.3:78628066-78628085 | MS.gene022736:intron | 40.0% |
| !! | AAGTGCTGGAAGTAAAGAGA+AGG | + | chr8.3:78628967-78628986 | MS.gene022736:intron | 40.0% |
| !! | CGTGGATTGATAGATGCTTT+TGG | - | chr8.3:78627563-78627582 | None:intergenic | 40.0% |
| AATATGCCAACCAAGGCTTC+AGG | - | chr8.3:78630056-78630075 | None:intergenic | 45.0% | |
| ACAACATCGTTGGAACCTTC+TGG | - | chr8.3:78627482-78627501 | None:intergenic | 45.0% | |
| AGAAGGGAAGGTTGTGTATG+TGG | + | chr8.3:78630001-78630020 | MS.gene022736:CDS | 45.0% | |
| AGGAAGGTGATATAGTGTGG+GGG | + | chr8.3:78628259-78628278 | MS.gene022736:CDS | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+AGG | + | chr8.3:78630029-78630048 | MS.gene022736:CDS | 45.0% | |
| ATATGCCAACCAAGGCTTCA+GGG | - | chr8.3:78630055-78630074 | None:intergenic | 45.0% | |
| ATATGTCTCTTGCTACCAGG+TGG | + | chr8.3:78629509-78629528 | MS.gene022736:intron | 45.0% | |
| CCTAGTAATCCGCAATTTGG+CGG | + | chr8.3:78627818-78627837 | MS.gene022736:intron | 45.0% | |
| CTTATGCTACCGCCAAATTG+CGG | - | chr8.3:78627830-78627849 | None:intergenic | 45.0% | |
| GCCACTAAATATGCCAACCA+AGG | - | chr8.3:78630063-78630082 | None:intergenic | 45.0% | |
| GCCTTGGTTGGCATATTTAG+TGG | + | chr8.3:78630059-78630078 | MS.gene022736:CDS | 45.0% | |
| GTATGTGGAAGACATAGCTG+AGG | + | chr8.3:78630016-78630035 | MS.gene022736:CDS | 45.0% | |
| GTTGCTACGTTGTTGGAACT+TGG | + | chr8.3:78628944-78628963 | MS.gene022736:intron | 45.0% | |
| TGTGAGATCATTCCACACAC+AGG | - | chr8.3:78629843-78629862 | None:intergenic | 45.0% | |
| TTGCATGGTTGCTACGTTGT+TGG | + | chr8.3:78628937-78628956 | MS.gene022736:intron | 45.0% | |
| ! | TATAAGCGGGTTCGTTTGCA+AGG | + | chr8.3:78629912-78629931 | MS.gene022736:CDS | 45.0% |
| ! | TGACGGGTCATCATTTATGC+AGG | - | chr8.3:78629022-78629041 | None:intergenic | 45.0% |
| ! | TTGTTGGAACTTGGAAGTGC+TGG | + | chr8.3:78628953-78628972 | MS.gene022736:intron | 45.0% |
| !! | GTTTTTGTTTCAGCTGCCTC+TGG | + | chr8.3:78628880-78628899 | MS.gene022736:CDS | 45.0% |
| !! | TGAAGGAAGTGCTGGATAGA+GGG | + | chr8.3:78628074-78628093 | MS.gene022736:intron | 45.0% |
| !! | TTGAAGGAAGTGCTGGATAG+AGG | + | chr8.3:78628073-78628092 | MS.gene022736:intron | 45.0% |
| !!! | TGTTATTTATATATTTTAAT+TGG | + | chr8.3:78627993-78628012 | MS.gene022736:intron | 5.0% |
| AAGTTGACCAACTGCACCAG+AGG | - | chr8.3:78628899-78628918 | None:intergenic | 50.0% | |
| ACCCGTCAGAATCTGATCGA+AGG | + | chr8.3:78629034-78629053 | MS.gene022736:intron | 50.0% | |
| ACCTTCCCTTCTCTGATACG+AGG | - | chr8.3:78629993-78630012 | None:intergenic | 50.0% | |
| AGAGTACAGCTTGATCCCTG+CGG | + | chr8.3:78628296-78628315 | MS.gene022736:CDS | 50.0% | |
| CCAGCATAAGCAGTCATTCC+TGG | - | chr8.3:78628823-78628842 | None:intergenic | 50.0% | |
| CCAGGAATGACTGCTTATGC+TGG | + | chr8.3:78628820-78628839 | MS.gene022736:CDS | 50.0% | |
| CGAGACACACTAGTGACATG+TGG | + | chr8.3:78629702-78629721 | MS.gene022736:intron | 50.0% | |
| CGCCTTCGATCAGATTCTGA+CGG | - | chr8.3:78629039-78629058 | None:intergenic | 50.0% | |
| GAAGTAGGCGCTACCAAGAA+AGG | + | chr8.3:78628850-78628869 | MS.gene022736:CDS | 50.0% | |
| GATTGAGGAACATAGGCACG+TGG | - | chr8.3:78627581-78627600 | None:intergenic | 50.0% | |
| GCCTTCGATCAGATTCTGAC+GGG | - | chr8.3:78629038-78629057 | None:intergenic | 50.0% | |
| GGCCAATTCGCCAAATTGCA+TGG | + | chr8.3:78628922-78628941 | MS.gene022736:CDS | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr8.3:78628901-78628920 | MS.gene022736:CDS | 50.0% | |
| TCCTGCCTCGTATCAGAGAA+GGG | + | chr8.3:78629985-78630004 | MS.gene022736:CDS | 50.0% | |
| TCTTTGAGTGCAGGTATGCC+AGG | + | chr8.3:78628802-78628821 | MS.gene022736:intron | 50.0% | |
| ! | CCGCCAAATTGCGGATTACT+AGG | - | chr8.3:78627821-78627840 | None:intergenic | 50.0% |
| !! | AAGTGCTGGATAGAGGGAAG+TGG | + | chr8.3:78628080-78628099 | MS.gene022736:intron | 50.0% |
| !! | TTACAGACGGGTTAGCCATC+AGG | + | chr8.3:78628491-78628510 | MS.gene022736:intron | 50.0% |
| AAAGGCCCTGAAGCCTTGGT+TGG | + | chr8.3:78630047-78630066 | MS.gene022736:CDS | 55.0% | |
| CTTGGTCGCATACCTGTGTG+TGG | + | chr8.3:78629828-78629847 | MS.gene022736:CDS | 55.0% | |
| GCCTCGTATCAGAGAAGGGA+AGG | + | chr8.3:78629989-78630008 | MS.gene022736:CDS | 55.0% | |
| GTCCTGCCTCGTATCAGAGA+AGG | + | chr8.3:78629984-78630003 | MS.gene022736:CDS | 55.0% | |
| TCCCTTCTCTGATACGAGGC+AGG | - | chr8.3:78629989-78630008 | None:intergenic | 55.0% | |
| TGAGAAAGGCCCTGAAGCCT+TGG | + | chr8.3:78630043-78630062 | MS.gene022736:CDS | 55.0% | |
| ! | CTCGTCCGTGTTGCTAAACG+TGG | - | chr8.3:78629686-78629705 | None:intergenic | 55.0% |
| TCAGCTGCCTCTGGTGCAGT+TGG | + | chr8.3:78628889-78628908 | MS.gene022736:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78627374 | 78630124 | 78627374 | ID=MS.gene022736 |
| chr8.3 | mRNA | 78627374 | 78630124 | 78627374 | ID=MS.gene022736.t1;Parent=MS.gene022736 |
| chr8.3 | exon | 78627374 | 78627601 | 78627374 | ID=MS.gene022736.t1.exon1;Parent=MS.gene022736.t1 |
| chr8.3 | CDS | 78627374 | 78627601 | 78627374 | ID=cds.MS.gene022736.t1;Parent=MS.gene022736.t1 |
| chr8.3 | exon | 78628204 | 78628381 | 78628204 | ID=MS.gene022736.t1.exon2;Parent=MS.gene022736.t1 |
| chr8.3 | CDS | 78628204 | 78628381 | 78628204 | ID=cds.MS.gene022736.t1;Parent=MS.gene022736.t1 |
| chr8.3 | exon | 78628815 | 78628954 | 78628815 | ID=MS.gene022736.t1.exon3;Parent=MS.gene022736.t1 |
| chr8.3 | CDS | 78628815 | 78628954 | 78628815 | ID=cds.MS.gene022736.t1;Parent=MS.gene022736.t1 |
| chr8.3 | exon | 78629528 | 78629610 | 78629528 | ID=MS.gene022736.t1.exon4;Parent=MS.gene022736.t1 |
| chr8.3 | CDS | 78629528 | 78629610 | 78629528 | ID=cds.MS.gene022736.t1;Parent=MS.gene022736.t1 |
| chr8.3 | exon | 78629746 | 78630124 | 78629746 | ID=MS.gene022736.t1.exon5;Parent=MS.gene022736.t1 |
| chr8.3 | CDS | 78629746 | 78630124 | 78629746 | ID=cds.MS.gene022736.t1;Parent=MS.gene022736.t1 |
| Gene Sequence |
| Protein sequence |
