Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020239.t1 | RHN38827.1 | 95.9 | 343 | 14 | 0 | 1 | 343 | 60 | 402 | 5.50E-188 | 666.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020239.t1 | Q9SLN8 | 73.3 | 341 | 90 | 1 | 3 | 343 | 4 | 343 | 3.0e-142 | 506.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020239.t1 | A0A396GJ76 | 95.9 | 343 | 14 | 0 | 1 | 343 | 60 | 402 | 4.0e-188 | 666.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020239 | MS.gene020227 | PPI |
| MS.gene020225 | MS.gene020239 | PPI |
| MS.gene020239 | MS.gene069341 | PPI |
| MS.gene020239 | MS.gene042467 | PPI |
| MS.gene020239 | MS.gene54433 | PPI |
| MS.gene020239 | MS.gene45375 | PPI |
| MS.gene020239 | MS.gene39314 | PPI |
| MS.gene020239 | MS.gene020226 | PPI |
| MS.gene020077 | MS.gene020239 | PPI |
| MS.gene020239 | MS.gene022722 | PPI |
| MS.gene39327 | MS.gene020239 | PPI |
| MS.gene020239 | MS.gene022738 | PPI |
| MS.gene020239 | MS.gene39326 | PPI |
| MS.gene020239 | MS.gene39313 | PPI |
| MS.gene020239 | MS.gene97874 | PPI |
| MS.gene020239 | MS.gene020076 | PPI |
| MS.gene020239 | MS.gene022721 | PPI |
| MS.gene020239 | MS.gene39312 | PPI |
| MS.gene020239 | MS.gene022737 | PPI |
| MS.gene39315 | MS.gene020239 | PPI |
| MS.gene020239 | MS.gene41778 | PPI |
| MS.gene020239 | MS.gene067859 | PPI |
| MS.gene020239 | MS.gene022735 | PPI |
| MS.gene54434 | MS.gene020239 | PPI |
| MS.gene020239 | MS.gene022736 | PPI |
| MS.gene020239 | MS.gene020033 | PPI |
| MS.gene08162 | MS.gene020239 | PPI |
| MS.gene020239 | MS.gene020228 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020239.t1 | MTR_8g009820 | 95.335 | 343 | 16 | 0 | 1 | 343 | 60 | 402 | 0.0 | 672 |
| MS.gene020239.t1 | MTR_8g009840 | 87.834 | 337 | 40 | 1 | 1 | 337 | 1 | 336 | 0.0 | 617 |
| MS.gene020239.t1 | MTR_8g009830 | 86.006 | 343 | 47 | 1 | 1 | 343 | 1 | 342 | 0.0 | 610 |
| MS.gene020239.t1 | MTR_8g010030 | 84.012 | 344 | 54 | 1 | 1 | 343 | 1 | 344 | 0.0 | 597 |
| MS.gene020239.t1 | MTR_8g009980 | 80.870 | 345 | 63 | 2 | 1 | 343 | 1 | 344 | 0.0 | 570 |
| MS.gene020239.t1 | MTR_8g010020 | 77.843 | 343 | 45 | 1 | 1 | 343 | 1 | 312 | 0.0 | 543 |
| MS.gene020239.t1 | MTR_8g010000 | 73.913 | 345 | 62 | 3 | 1 | 343 | 1 | 319 | 0.0 | 514 |
| MS.gene020239.t1 | MTR_4g082970 | 67.544 | 342 | 108 | 2 | 4 | 343 | 10 | 350 | 1.48e-166 | 468 |
| MS.gene020239.t1 | MTR_8g007325 | 95.413 | 218 | 10 | 0 | 1 | 218 | 1 | 218 | 2.35e-152 | 427 |
| MS.gene020239.t1 | MTR_7g406860 | 61.047 | 344 | 133 | 1 | 1 | 343 | 3 | 346 | 1.65e-147 | 420 |
| MS.gene020239.t1 | MTR_0011s0280 | 47.688 | 346 | 175 | 2 | 3 | 343 | 2 | 346 | 6.32e-113 | 332 |
| MS.gene020239.t1 | MTR_2g088190 | 41.329 | 346 | 191 | 7 | 4 | 340 | 5 | 347 | 1.16e-79 | 247 |
| MS.gene020239.t1 | MTR_2g088220 | 43.434 | 297 | 159 | 6 | 30 | 318 | 31 | 326 | 2.46e-73 | 231 |
| MS.gene020239.t1 | MTR_2g088200 | 38.769 | 325 | 186 | 7 | 4 | 318 | 5 | 326 | 1.90e-69 | 221 |
| MS.gene020239.t1 | MTR_5g095030 | 57.812 | 128 | 54 | 0 | 214 | 341 | 9 | 136 | 8.67e-50 | 163 |
| MS.gene020239.t1 | MTR_4g086410 | 33.333 | 243 | 147 | 6 | 105 | 340 | 388 | 622 | 1.18e-26 | 111 |
| MS.gene020239.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 138 | 340 | 276 | 482 | 2.41e-26 | 109 |
| MS.gene020239.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 138 | 340 | 416 | 622 | 3.71e-26 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020239.t1 | AT5G16970 | 70.760 | 342 | 95 | 3 | 6 | 343 | 5 | 345 | 2.09e-179 | 500 |
| MS.gene020239.t1 | AT3G03080 | 71.304 | 345 | 95 | 2 | 2 | 343 | 7 | 350 | 2.57e-178 | 498 |
| MS.gene020239.t1 | AT1G26320 | 71.221 | 344 | 94 | 3 | 4 | 343 | 9 | 351 | 3.32e-178 | 498 |
| MS.gene020239.t1 | AT5G17000 | 70.760 | 342 | 95 | 3 | 6 | 343 | 5 | 345 | 1.16e-177 | 496 |
| MS.gene020239.t1 | AT5G16990 | 69.795 | 341 | 99 | 4 | 6 | 343 | 4 | 343 | 2.74e-174 | 488 |
| MS.gene020239.t1 | AT1G26320 | 70.058 | 344 | 93 | 4 | 4 | 343 | 9 | 346 | 1.13e-173 | 486 |
| MS.gene020239.t1 | AT5G37980 | 66.472 | 343 | 109 | 3 | 6 | 343 | 12 | 353 | 9.35e-170 | 476 |
| MS.gene020239.t1 | AT5G37940 | 65.889 | 343 | 111 | 3 | 6 | 343 | 12 | 353 | 1.96e-168 | 473 |
| MS.gene020239.t1 | AT5G16960 | 66.377 | 345 | 111 | 3 | 1 | 341 | 1 | 344 | 3.77e-167 | 469 |
| MS.gene020239.t1 | AT5G16960 | 66.377 | 345 | 111 | 3 | 1 | 341 | 1 | 344 | 3.77e-167 | 469 |
| MS.gene020239.t1 | AT5G38000 | 64.516 | 341 | 115 | 3 | 6 | 341 | 12 | 351 | 3.34e-163 | 460 |
| MS.gene020239.t1 | AT5G38000 | 63.798 | 337 | 113 | 4 | 6 | 334 | 12 | 347 | 1.04e-157 | 446 |
| MS.gene020239.t1 | AT3G59845 | 64.348 | 345 | 113 | 6 | 4 | 341 | 5 | 346 | 6.53e-155 | 438 |
| MS.gene020239.t1 | AT5G38000 | 60.704 | 341 | 109 | 4 | 6 | 341 | 12 | 332 | 1.72e-147 | 419 |
| MS.gene020239.t1 | AT1G65560 | 58.841 | 345 | 136 | 5 | 4 | 343 | 7 | 350 | 1.84e-135 | 389 |
| MS.gene020239.t1 | AT5G16980 | 58.309 | 343 | 105 | 4 | 1 | 343 | 1 | 305 | 2.71e-134 | 385 |
| MS.gene020239.t1 | AT5G16980 | 76.106 | 226 | 54 | 0 | 118 | 343 | 14 | 239 | 8.77e-125 | 358 |
| MS.gene020239.t1 | AT5G16980 | 76.106 | 226 | 54 | 0 | 118 | 343 | 14 | 239 | 8.77e-125 | 358 |
| MS.gene020239.t1 | AT3G59845 | 71.020 | 245 | 69 | 2 | 98 | 341 | 1 | 244 | 1.60e-121 | 350 |
| MS.gene020239.t1 | AT1G65560 | 61.255 | 271 | 101 | 3 | 77 | 343 | 4 | 274 | 2.87e-113 | 330 |
| MS.gene020239.t1 | AT5G17000 | 69.725 | 218 | 61 | 3 | 6 | 219 | 5 | 221 | 1.04e-106 | 312 |
| MS.gene020239.t1 | AT1G49670 | 35.407 | 209 | 127 | 5 | 138 | 340 | 412 | 618 | 8.28e-26 | 108 |
| MS.gene020239.t1 | AT1G49670 | 35.468 | 203 | 123 | 5 | 144 | 340 | 441 | 641 | 1.42e-24 | 105 |
| MS.gene020239.t1 | AT5G37960 | 54.667 | 75 | 34 | 0 | 264 | 338 | 27 | 101 | 1.43e-18 | 80.5 |
Find 82 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTCTTTGTAGTTAA+AGG | 0.159741 | 8.3:+78821723 | None:intergenic |
| AACCATGCAATTTGGCAAAT+TGG | 0.212138 | 8.3:+78822099 | None:intergenic |
| TAGTTTGGGGAATGACTAAA+TGG | 0.237323 | 8.3:-78822420 | MS.gene020239:CDS |
| TCATCTTTATACAAAATTCT+TGG | 0.259580 | 8.3:-78821167 | MS.gene020239:CDS |
| ACCTGAAGGTGTCACAAATT+TGG | 0.261566 | 8.3:-78821245 | MS.gene020239:CDS |
| AAAACTGTCTCTCCTTTCTT+AGG | 0.278383 | 8.3:+78822161 | None:intergenic |
| AAGTAAATGTCGATGCCTTC+TGG | 0.282317 | 8.3:+78821370 | None:intergenic |
| AAATCATCTTTCTTATAATC+TGG | 0.299191 | 8.3:+78822442 | None:intergenic |
| TAAGAAAGATGATTTAGTTT+GGG | 0.308474 | 8.3:-78822434 | MS.gene020239:CDS |
| GCCAAATTTGTGACACCTTC+AGG | 0.309515 | 8.3:+78821244 | None:intergenic |
| ATAAGAAAGATGATTTAGTT+TGG | 0.311139 | 8.3:-78822435 | MS.gene020239:CDS |
| AACATAGCAACCATGCAATT+TGG | 0.315125 | 8.3:+78822091 | None:intergenic |
| TTGAAAAGTATTTCAGTTGC+AGG | 0.321684 | 8.3:+78822379 | None:intergenic |
| TGAGAATGGCCCTGCAGCTT+TGG | 0.335929 | 8.3:-78821080 | MS.gene020239:CDS |
| GGTGCTGTTGGTCAACTTGT+TGG | 0.364308 | 8.3:-78822122 | MS.gene020239:CDS |
| TGCTATGTTGTTGGAAGTGC+TGG | 0.374726 | 8.3:-78822077 | MS.gene020239:CDS |
| CAATAGTGTCCTTGGCCATC+AGG | 0.381937 | 8.3:+78823541 | None:intergenic |
| TTGCAGCCATTGACAGGATT+AGG | 0.387244 | 8.3:-78822493 | MS.gene020239:intron |
| GTCCCGCTTTCCTACTATAC+TGG | 0.392986 | 8.3:-78822340 | MS.gene020239:CDS |
| GTGTCTAAAGTTGTAGAATC+TGG | 0.408050 | 8.3:-78822469 | MS.gene020239:CDS |
| TTTGAGCAGAACTACATCAT+TGG | 0.414334 | 8.3:+78823599 | None:intergenic |
| TCCTACTATACTGGAATTCT+CGG | 0.415079 | 8.3:-78822331 | MS.gene020239:intron |
| GCTTTGGTTGGTCTGTTTAG+TGG | 0.421611 | 8.3:-78821064 | MS.gene020239:CDS |
| GGACTTGGTGGTCTCACCCC+TGG | 0.422269 | 8.3:-78823516 | MS.gene020239:CDS |
| ATATCATATATAAGCGGATT+CGG | 0.434543 | 8.3:-78821219 | MS.gene020239:CDS |
| CCAGCATAAGCAGTCATTCC+CGG | 0.444732 | 8.3:+78822203 | None:intergenic |
| TATGCTGGTTTCTTTGAAGT+AGG | 0.445138 | 8.3:-78822188 | MS.gene020239:CDS |
| ATGGCCAAGGACACTATTGC+AGG | 0.448653 | 8.3:-78823537 | MS.gene020239:CDS |
| ACGTTCATGTCTGATTCTAT+AGG | 0.452868 | 8.3:+78823660 | None:intergenic |
| GAGTAATTGCAGCCATTGAC+AGG | 0.454761 | 8.3:-78822499 | MS.gene020239:intron |
| AGAAGGAAAGGTTGTGTATG+TGG | 0.461025 | 8.3:-78821122 | MS.gene020239:CDS |
| AATGGCCCTGCAGCTTTGGT+TGG | 0.462636 | 8.3:-78821076 | MS.gene020239:CDS |
| TCATCTGCCTCTGGTGCTGT+TGG | 0.469392 | 8.3:-78822134 | MS.gene020239:CDS |
| TAAATGGGAAGAGTATAGTT+TGG | 0.470092 | 8.3:-78822404 | MS.gene020239:CDS |
| ACCTCGATGCAGCTTTGAAA+AGG | 0.476543 | 8.3:-78821699 | MS.gene020239:intron |
| TTGCATGGTTGCTATGTTGT+TGG | 0.478375 | 8.3:-78822086 | MS.gene020239:CDS |
| TTGTTTGAGTACAGGTATGC+CGG | 0.481096 | 8.3:-78822222 | MS.gene020239:intron |
| GACACTATTGCAGGACTTGG+TGG | 0.484411 | 8.3:-78823528 | MS.gene020239:CDS |
| AACAGACCAACCAAAGCTGC+AGG | 0.494837 | 8.3:+78821070 | None:intergenic |
| ACCGAGAATTCCAGTATAGT+AGG | 0.503877 | 8.3:+78822330 | None:intergenic |
| CCGGGAATGACTGCTTATGC+TGG | 0.504351 | 8.3:-78822203 | MS.gene020239:CDS |
| AAGTCCTGCAATAGTGTCCT+TGG | 0.515317 | 8.3:+78823533 | None:intergenic |
| AAGAAAGATGATTTAGTTTG+GGG | 0.523463 | 8.3:-78822433 | MS.gene020239:CDS |
| GTCTCTTATAAGAGAAGGAA+AGG | 0.527141 | 8.3:-78821134 | MS.gene020239:CDS |
| CTGTTTAGTGGTCAAAATGT+TGG | 0.532048 | 8.3:-78821052 | MS.gene020239:CDS |
| ATAGCTGAGGGTCTTGAGAA+TGG | 0.533886 | 8.3:-78821094 | MS.gene020239:CDS |
| GCCATCAGGATTCTCAGATA+AGG | 0.534182 | 8.3:+78823555 | None:intergenic |
| CTCTTGAATATGAAACTCCA+TGG | 0.534749 | 8.3:-78821313 | MS.gene020239:CDS |
| GAAGTAGGCTCTCCTAAGAA+AGG | 0.539150 | 8.3:-78822173 | MS.gene020239:CDS |
| TGAAAAGTATTTCAGTTGCA+GGG | 0.540772 | 8.3:+78822380 | None:intergenic |
| GACATTTACTTTGAGAACGT+TGG | 0.545762 | 8.3:-78821358 | MS.gene020239:CDS |
| TTCCAGTATAGTAGGAAAGC+GGG | 0.546840 | 8.3:+78822338 | None:intergenic |
| GACACTCCTAATCCTGTCAA+TGG | 0.548059 | 8.3:+78822487 | None:intergenic |
| GTATTGTCTCTTATAAGAGA+AGG | 0.553750 | 8.3:-78821139 | MS.gene020239:CDS |
| AGTTTGGGGAATGACTAAAT+GGG | 0.554508 | 8.3:-78822419 | MS.gene020239:CDS |
| CACACACAGGTATGCGCCCA+TGG | 0.561199 | 8.3:+78821296 | None:intergenic |
| ATTTACTTTGAGAACGTTGG+AGG | 0.562529 | 8.3:-78821355 | MS.gene020239:CDS |
| TGTTTGAGTACAGGTATGCC+GGG | 0.570748 | 8.3:-78822221 | MS.gene020239:intron |
| GGCCAATTTGCCAAATTGCA+TGG | 0.571871 | 8.3:-78822101 | MS.gene020239:CDS |
| TCTGAGAATCCTGATGGCCA+AGG | 0.573459 | 8.3:-78823550 | MS.gene020239:CDS |
| CATATATAAGCGGATTCGGA+TGG | 0.577990 | 8.3:-78821215 | MS.gene020239:CDS |
| AAGGACACTATTGCAGGACT+TGG | 0.579832 | 8.3:-78823531 | MS.gene020239:CDS |
| GATTCTCAGATAAGGATCAC+AGG | 0.585432 | 8.3:+78823563 | None:intergenic |
| TATAAGCGGATTCGGATGGA+AGG | 0.599880 | 8.3:-78821211 | MS.gene020239:CDS |
| ATAGCATGACATACAGAACC+AGG | 0.609222 | 8.3:+78823498 | None:intergenic |
| AAGTGCTGGAAGTAAAGAGA+AGG | 0.616160 | 8.3:-78822063 | MS.gene020239:intron |
| TCCTTATCTGAGAATCCTGA+TGG | 0.619794 | 8.3:-78823556 | MS.gene020239:CDS |
| TAAACTAGATACTTTCCAGA+AGG | 0.622571 | 8.3:-78821385 | MS.gene020239:intron |
| ACTACATCATTGGAACCTTG+TGG | 0.625916 | 8.3:+78823609 | None:intergenic |
| TCTTGAATATGAAACTCCAT+GGG | 0.636007 | 8.3:-78821312 | MS.gene020239:CDS |
| AAGTTGACCAACAGCACCAG+AGG | 0.637825 | 8.3:+78822127 | None:intergenic |
| ATTCCAGTATAGTAGGAAAG+CGG | 0.640802 | 8.3:+78822337 | None:intergenic |
| TGGCACATATCATATATAAG+CGG | 0.642495 | 8.3:-78821225 | MS.gene020239:CDS |
| ATTACTCTCAAGCTTCCACA+AGG | 0.648436 | 8.3:-78823624 | MS.gene020239:CDS |
| TACAATCTTACTCAACCTGA+AGG | 0.650544 | 8.3:-78821259 | MS.gene020239:CDS |
| ACAGACCAACCAAAGCTGCA+GGG | 0.668442 | 8.3:+78821071 | None:intergenic |
| CATGGGCGCATACCTGTGTG+TGG | 0.680594 | 8.3:-78821295 | MS.gene020239:CDS |
| AGCATGACATACAGAACCAG+GGG | 0.683293 | 8.3:+78823500 | None:intergenic |
| TGTGAGATCATTCCACACAC+AGG | 0.692179 | 8.3:+78821283 | None:intergenic |
| TAGCATGACATACAGAACCA+GGG | 0.696996 | 8.3:+78823499 | None:intergenic |
| GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:-78821107 | MS.gene020239:CDS |
| TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:-78821106 | MS.gene020239:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGTATAAAATTTACTT+TGG | - | chr8.3:78821397-78821416 | MS.gene020239:intron | 10.0% |
| !! | TTATGTATAAAATTTACTTT+GGG | - | chr8.3:78821398-78821417 | MS.gene020239:intron | 10.0% |
| !! | AATTGAATTTAACATTTCAA+AGG | - | chr8.3:78821351-78821370 | MS.gene020239:CDS | 15.0% |
| !! | TATTCATTTAGTATAATTAC+AGG | + | chr8.3:78822938-78822957 | None:intergenic | 15.0% |
| !!! | ATACTTTGTCTTTTAAAATT+AGG | + | chr8.3:78821377-78821396 | None:intergenic | 15.0% |
| !!! | GATTTGTTGAAAAATAAATT+TGG | - | chr8.3:78822978-78822997 | MS.gene020239:intron | 15.0% |
| !!! | TTTTTTTTTGTTTGTAAACT+TGG | + | chr8.3:78821669-78821688 | None:intergenic | 15.0% |
| !! | AAAGTTAGTTATAATGTGTA+TGG | + | chr8.3:78822111-78822130 | None:intergenic | 20.0% |
| !! | AAATCATCTTTCTTATAATC+TGG | + | chr8.3:78822296-78822315 | None:intergenic | 20.0% |
| !! | AAGTAACTATAATGAAGTTA+TGG | - | chr8.3:78822159-78822178 | MS.gene020239:CDS | 20.0% |
| !! | AATATCAAGGCTATAAATAA+TGG | - | chr8.3:78821958-78821977 | MS.gene020239:intron | 20.0% |
| !! | ACATTTGATTAATCATTCTA+CGG | - | chr8.3:78822767-78822786 | MS.gene020239:intron | 20.0% |
| !! | ATAAGAAAGATGATTTAGTT+TGG | - | chr8.3:78822300-78822319 | MS.gene020239:intron | 20.0% |
| !! | ATTATTATTTGTGTGTATGT+AGG | - | chr8.3:78823250-78823269 | MS.gene020239:intron | 20.0% |
| !! | CATACACACAAATAATAATT+TGG | + | chr8.3:78823249-78823268 | None:intergenic | 20.0% |
| !! | CATTATAGTTACTTAGTTTA+TGG | + | chr8.3:78822153-78822172 | None:intergenic | 20.0% |
| !! | TCATCTTTATACAAAATTCT+TGG | - | chr8.3:78823568-78823587 | MS.gene020239:CDS | 20.0% |
| !! | TTAGTATAATTACAGGATAA+TGG | + | chr8.3:78822931-78822950 | None:intergenic | 20.0% |
| !!! | CTATTTTAAATTTTGGAAAC+CGG | - | chr8.3:78822892-78822911 | MS.gene020239:intron | 20.0% |
| !!! | TAAGAAAGATGATTTAGTTT+GGG | - | chr8.3:78822301-78822320 | MS.gene020239:intron | 20.0% |
| ! | AGTTGCATTAGATAATATAG+AGG | - | chr8.3:78821869-78821888 | MS.gene020239:intron | 25.0% |
| ! | ATCATAATCTTTACCTACTT+GGG | + | chr8.3:78821844-78821863 | None:intergenic | 25.0% |
| ! | ATTATTTAATGACCCAAGAA+AGG | - | chr8.3:78821800-78821819 | MS.gene020239:intron | 25.0% |
| ! | CTTCATAGATAGTTATTACT+TGG | - | chr8.3:78823286-78823305 | MS.gene020239:intron | 25.0% |
| ! | TAATGGTTGTAATTATGTAC+CGG | + | chr8.3:78822914-78822933 | None:intergenic | 25.0% |
| ! | TGTAATCTGTTTAGAGAAAA+TGG | + | chr8.3:78821715-78821734 | None:intergenic | 25.0% |
| ! | TGTTAATTCATCATTTATGC+AGG | + | chr8.3:78822744-78822763 | None:intergenic | 25.0% |
| ! | TTTCTCTTCTTTGTAGTTAA+AGG | + | chr8.3:78823015-78823034 | None:intergenic | 25.0% |
| !! | AAGGAGAAATTACTCTAAAA+AGG | + | chr8.3:78822062-78822081 | None:intergenic | 25.0% |
| !! | ATATCATATATAAGCGGATT+CGG | - | chr8.3:78823516-78823535 | MS.gene020239:CDS | 25.0% |
| !!! | AAGAAAGATGATTTAGTTTG+GGG | - | chr8.3:78822302-78822321 | MS.gene020239:intron | 25.0% |
| !!! | TTGTTGTTGCTTTTGAAATT+AGG | - | chr8.3:78821311-78821330 | MS.gene020239:CDS | 25.0% |
| CATCATAATCTTTACCTACT+TGG | + | chr8.3:78821845-78821864 | None:intergenic | 30.0% | |
| GAATATAATTATGACACACC+AGG | - | chr8.3:78822953-78822972 | MS.gene020239:intron | 30.0% | |
| GCAATAATGTTTGATTAGTG+TGG | + | chr8.3:78821458-78821477 | None:intergenic | 30.0% | |
| GCATCAACACTTTATATTCA+AGG | - | chr8.3:78823130-78823149 | MS.gene020239:intron | 30.0% | |
| GTATTGTCTCTTATAAGAGA+AGG | - | chr8.3:78823596-78823615 | MS.gene020239:CDS | 30.0% | |
| GTGAAGTTGTTAGAATATCA+AGG | - | chr8.3:78821945-78821964 | MS.gene020239:intron | 30.0% | |
| TAAACTAGATACTTTCCAGA+AGG | - | chr8.3:78823350-78823369 | MS.gene020239:intron | 30.0% | |
| TATTATCTTGAGCCTTTCTT+GGG | + | chr8.3:78821815-78821834 | None:intergenic | 30.0% | |
| TCTTGAATATGAAACTCCAT+GGG | - | chr8.3:78823423-78823442 | MS.gene020239:intron | 30.0% | |
| TGGCACATATCATATATAAG+CGG | - | chr8.3:78823510-78823529 | MS.gene020239:intron | 30.0% | |
| TTGTTTGTAAACTTGGTATC+CGG | + | chr8.3:78821662-78821681 | None:intergenic | 30.0% | |
| ! | CATTCATGAATAGTTTGTCT+TGG | - | chr8.3:78821276-78821295 | MS.gene020239:CDS | 30.0% |
| ! | TAAATGGGAAGAGTATAGTT+TGG | - | chr8.3:78822331-78822350 | MS.gene020239:intron | 30.0% |
| !! | GAATATAAAGTGTTGATGCT+AGG | + | chr8.3:78823129-78823148 | None:intergenic | 30.0% |
| !! | TAGTTTGTCTTGGATTTTGA+AGG | - | chr8.3:78821286-78821305 | MS.gene020239:CDS | 30.0% |
| !! | TATTTTTCAACAAATCCACC+TGG | + | chr8.3:78822974-78822993 | None:intergenic | 30.0% |
| !! | TGAAAAGTATTTCAGTTGCA+GGG | + | chr8.3:78822358-78822377 | None:intergenic | 30.0% |
| !! | TTGAAAAGTATTTCAGTTGC+AGG | + | chr8.3:78822359-78822378 | None:intergenic | 30.0% |
| !! | TTGTGTTTTTGTTTGAGTAC+AGG | - | chr8.3:78822505-78822524 | MS.gene020239:intron | 30.0% |
| !!! | GTCTGTTTCTAACAGTTTTA+TGG | - | chr8.3:78823058-78823077 | MS.gene020239:intron | 30.0% |
| !!! | TGCTTTTGAAATTAGGAAGT+GGG | - | chr8.3:78821318-78821337 | MS.gene020239:CDS | 30.0% |
| !!! | TTGCTTTTGAAATTAGGAAG+TGG | - | chr8.3:78821317-78821336 | MS.gene020239:CDS | 30.0% |
| AAAACTGTCTCTCCTTTCTT+AGG | + | chr8.3:78822577-78822596 | None:intergenic | 35.0% | |
| AACATAGCAACCATGCAATT+TGG | + | chr8.3:78822647-78822666 | None:intergenic | 35.0% | |
| AACATTATTGCTAACCCACT+TGG | - | chr8.3:78821467-78821486 | MS.gene020239:intron | 35.0% | |
| AACCATGCAATTTGGCAAAT+TGG | + | chr8.3:78822639-78822658 | None:intergenic | 35.0% | |
| ACATTATTGCTAACCCACTT+GGG | - | chr8.3:78821468-78821487 | MS.gene020239:intron | 35.0% | |
| ACGTTCATGTCTGATTCTAT+AGG | + | chr8.3:78821078-78821097 | None:intergenic | 35.0% | |
| AGTAATTTCTCCTTCCTTGT+AGG | - | chr8.3:78822068-78822087 | MS.gene020239:CDS | 35.0% | |
| AGTTTGGGGAATGACTAAAT+GGG | - | chr8.3:78822316-78822335 | MS.gene020239:intron | 35.0% | |
| ATTCCAGTATAGTAGGAAAG+CGG | + | chr8.3:78822401-78822420 | None:intergenic | 35.0% | |
| CTATTATCTTGAGCCTTTCT+TGG | + | chr8.3:78821816-78821835 | None:intergenic | 35.0% | |
| CTCTTGAATATGAAACTCCA+TGG | - | chr8.3:78823422-78823441 | MS.gene020239:intron | 35.0% | |
| CTGTTTAGTGGTCAAAATGT+TGG | - | chr8.3:78823683-78823702 | MS.gene020239:CDS | 35.0% | |
| GATAATAGAATAGCCCAAGT+AGG | - | chr8.3:78821828-78821847 | MS.gene020239:intron | 35.0% | |
| GCTTAAGACCAACTAATCTA+AGG | + | chr8.3:78821640-78821659 | None:intergenic | 35.0% | |
| GTCTCTTATAAGAGAAGGAA+AGG | - | chr8.3:78823601-78823620 | MS.gene020239:CDS | 35.0% | |
| GTTAAGAGAAGCAAACTCTA+AGG | + | chr8.3:78821518-78821537 | None:intergenic | 35.0% | |
| TACAATCTTACTCAACCTGA+AGG | - | chr8.3:78823476-78823495 | MS.gene020239:intron | 35.0% | |
| TAGTTTGGGGAATGACTAAA+TGG | - | chr8.3:78822315-78822334 | MS.gene020239:intron | 35.0% | |
| TATAATTATGACACACCAGG+TGG | - | chr8.3:78822956-78822975 | MS.gene020239:intron | 35.0% | |
| TCCTACTATACTGGAATTCT+CGG | - | chr8.3:78822404-78822423 | MS.gene020239:CDS | 35.0% | |
| TGTCATGAATCACAACGAAA+TGG | + | chr8.3:78822481-78822500 | None:intergenic | 35.0% | |
| TTTGAGCAGAACTACATCAT+TGG | + | chr8.3:78821139-78821158 | None:intergenic | 35.0% | |
| ! | ATTTACTTTGAGAACGTTGG+AGG | - | chr8.3:78823380-78823399 | MS.gene020239:intron | 35.0% |
| ! | GACATTTACTTTGAGAACGT+TGG | - | chr8.3:78823377-78823396 | MS.gene020239:intron | 35.0% |
| ! | GGATAGTGGTTATTGTAGTT+AGG | + | chr8.3:78822819-78822838 | None:intergenic | 35.0% |
| ! | GTGTCTAAAGTTGTAGAATC+TGG | - | chr8.3:78822266-78822285 | MS.gene020239:intron | 35.0% |
| !! | ATGGTTACAGTTTGTTGACT+GGG | - | chr8.3:78822178-78822197 | MS.gene020239:CDS | 35.0% |
| !! | ATTTTGAGAGACTATGTGTC+TGG | - | chr8.3:78821048-78821067 | MS.gene020239:CDS | 35.0% |
| !! | CTAGATCCTTCTAAAACATG+AGG | + | chr8.3:78821900-78821919 | None:intergenic | 35.0% |
| !! | TAGATTAGTTGGTCTTAAGC+CGG | - | chr8.3:78821640-78821659 | MS.gene020239:intron | 35.0% |
| !! | TATGCTGGTTTCTTTGAAGT+AGG | - | chr8.3:78822547-78822566 | MS.gene020239:intron | 35.0% |
| !! | TATGGTTACAGTTTGTTGAC+TGG | - | chr8.3:78822177-78822196 | MS.gene020239:CDS | 35.0% |
| !!! | GCTTTTGAAATTAGGAAGTG+GGG | - | chr8.3:78821319-78821338 | MS.gene020239:CDS | 35.0% |
| AAGTAAATGTCGATGCCTTC+TGG | + | chr8.3:78823368-78823387 | None:intergenic | 40.0% | |
| ACCGAGAATTCCAGTATAGT+AGG | + | chr8.3:78822408-78822427 | None:intergenic | 40.0% | |
| ACTACATCATTGGAACCTTG+TGG | + | chr8.3:78821129-78821148 | None:intergenic | 40.0% | |
| AGAAGGAAAGGTTGTGTATG+TGG | - | chr8.3:78823613-78823632 | MS.gene020239:CDS | 40.0% | |
| ATAGCATGACATACAGAACC+AGG | + | chr8.3:78821240-78821259 | None:intergenic | 40.0% | |
| ATTACTCTCAAGCTTCCACA+AGG | - | chr8.3:78821111-78821130 | MS.gene020239:CDS | 40.0% | |
| CACATGTGACATTGTTGTGT+TGG | + | chr8.3:78823201-78823220 | None:intergenic | 40.0% | |
| CACCTACGACTCATCATAAT+GGG | + | chr8.3:78821928-78821947 | None:intergenic | 40.0% | |
| CTGCCGTTAAAGTGACATAT+TGG | + | chr8.3:78822204-78822223 | None:intergenic | 40.0% | |
| GATTCTCAGATAAGGATCAC+AGG | + | chr8.3:78821175-78821194 | None:intergenic | 40.0% | |
| GTTGGACTCCTTAGATTAGT+TGG | - | chr8.3:78821629-78821648 | MS.gene020239:intron | 40.0% | |
| TAGCATGACATACAGAACCA+GGG | + | chr8.3:78821239-78821258 | None:intergenic | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | - | chr8.3:78823629-78823648 | MS.gene020239:CDS | 40.0% | |
| TCAACAAGTGAGCAAAGACT+TGG | + | chr8.3:78822840-78822859 | None:intergenic | 40.0% | |
| TCACCTACGACTCATCATAA+TGG | + | chr8.3:78821929-78821948 | None:intergenic | 40.0% | |
| TCCTTATCTGAGAATCCTGA+TGG | - | chr8.3:78821179-78821198 | MS.gene020239:CDS | 40.0% | |
| TCTTAACGTTTCGATTCCCT+CGG | - | chr8.3:78821531-78821550 | MS.gene020239:intron | 40.0% | |
| TTCCAGTATAGTAGGAAAGC+GGG | + | chr8.3:78822400-78822419 | None:intergenic | 40.0% | |
| TTGCATGGTTGCTATGTTGT+TGG | - | chr8.3:78822649-78822668 | MS.gene020239:intron | 40.0% | |
| TTGTTTGAGTACAGGTATGC+CGG | - | chr8.3:78822513-78822532 | MS.gene020239:intron | 40.0% | |
| ! | AAGTCTTTGCTCACTTGTTG+AGG | - | chr8.3:78822839-78822858 | MS.gene020239:intron | 40.0% |
| ! | CATATATAAGCGGATTCGGA+TGG | - | chr8.3:78823520-78823539 | MS.gene020239:CDS | 40.0% |
| !! | AAGTGCTGGAAGTAAAGAGA+AGG | - | chr8.3:78822672-78822691 | MS.gene020239:intron | 40.0% |
| !! | ACCTGAAGGTGTCACAAATT+TGG | - | chr8.3:78823490-78823509 | MS.gene020239:intron | 40.0% |
| !! | GGGCCAATATGTCACTTTAA+CGG | - | chr8.3:78822198-78822217 | MS.gene020239:CDS | 40.0% |
| !! | GTGAGTCCTCATGTTTTAGA+AGG | - | chr8.3:78821891-78821910 | MS.gene020239:intron | 40.0% |
| !! | GTGTATGGTACCACTTTTGA+TGG | + | chr8.3:78822096-78822115 | None:intergenic | 40.0% |
| !! | GTTTTTGTTTCATCTGCCTC+TGG | - | chr8.3:78822592-78822611 | MS.gene020239:intron | 40.0% |
| AAGGACACTATTGCAGGACT+TGG | - | chr8.3:78821204-78821223 | MS.gene020239:CDS | 45.0% | |
| AAGTCCTGCAATAGTGTCCT+TGG | + | chr8.3:78821205-78821224 | None:intergenic | 45.0% | |
| AGCATGACATACAGAACCAG+GGG | + | chr8.3:78821238-78821257 | None:intergenic | 45.0% | |
| AGCCAGAGCAAGACTATGTA+TGG | + | chr8.3:78821578-78821597 | None:intergenic | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+TGG | - | chr8.3:78823641-78823660 | MS.gene020239:CDS | 45.0% | |
| CACCCATTATGATGAGTCGT+AGG | - | chr8.3:78821923-78821942 | MS.gene020239:intron | 45.0% | |
| GAAGTAGGCTCTCCTAAGAA+AGG | - | chr8.3:78822562-78822581 | MS.gene020239:intron | 45.0% | |
| GACACTCCTAATCCTGTCAA+TGG | + | chr8.3:78822251-78822270 | None:intergenic | 45.0% | |
| GAGTAATTGCAGCCATTGAC+AGG | - | chr8.3:78822236-78822255 | MS.gene020239:intron | 45.0% | |
| GCCAAATTTGTGACACCTTC+AGG | + | chr8.3:78823494-78823513 | None:intergenic | 45.0% | |
| GCCATCAGGATTCTCAGATA+AGG | + | chr8.3:78821183-78821202 | None:intergenic | 45.0% | |
| GGCCAATTTGCCAAATTGCA+TGG | - | chr8.3:78822634-78822653 | MS.gene020239:intron | 45.0% | |
| GTATGTGGAAGACATAGCTG+AGG | - | chr8.3:78823628-78823647 | MS.gene020239:CDS | 45.0% | |
| GTGAGCAAAGACTTGGATAG+TGG | + | chr8.3:78822833-78822852 | None:intergenic | 45.0% | |
| TATTGCTAACCCACTTGGGT+TGG | - | chr8.3:78821472-78821491 | MS.gene020239:intron | 45.0% | |
| TGTCAGACACTAACACGTGT+CGG | + | chr8.3:78823178-78823197 | None:intergenic | 45.0% | |
| TGTGAGATCATTCCACACAC+AGG | + | chr8.3:78823455-78823474 | None:intergenic | 45.0% | |
| TGTTTGAGTACAGGTATGCC+GGG | - | chr8.3:78822514-78822533 | MS.gene020239:intron | 45.0% | |
| TTGCAGCCATTGACAGGATT+AGG | - | chr8.3:78822242-78822261 | MS.gene020239:intron | 45.0% | |
| ! | AAGGTGTTTCCAACACGTGT+TGG | - | chr8.3:78823149-78823168 | MS.gene020239:intron | 45.0% |
| ! | ACCTTTTCAAAGCTGCATCG+AGG | + | chr8.3:78823040-78823059 | None:intergenic | 45.0% |
| ! | CTTGTAGGTGCCATCAAAAG+TGG | - | chr8.3:78822083-78822102 | MS.gene020239:CDS | 45.0% |
| ! | GTCCATACATAGTCTTGCTC+TGG | - | chr8.3:78821573-78821592 | MS.gene020239:intron | 45.0% |
| ! | TATAAGCGGATTCGGATGGA+AGG | - | chr8.3:78823524-78823543 | MS.gene020239:CDS | 45.0% |
| ! | TGCTATGTTGTTGGAAGTGC+TGG | - | chr8.3:78822658-78822677 | MS.gene020239:intron | 45.0% |
| ! | TTTGATGGCACCTACAAGGA+AGG | + | chr8.3:78822081-78822100 | None:intergenic | 45.0% |
| !! | ACCTCGATGCAGCTTTGAAA+AGG | - | chr8.3:78823036-78823055 | MS.gene020239:intron | 45.0% |
| !! | CACTTTTGATGGCACCTACA+AGG | + | chr8.3:78822085-78822104 | None:intergenic | 45.0% |
| !! | GCTTTGGTTGGTCTGTTTAG+TGG | - | chr8.3:78823671-78823690 | MS.gene020239:CDS | 45.0% |
| !!! | GATTCCCTCGGTGTCAATTT+TGG | - | chr8.3:78821543-78821562 | MS.gene020239:intron | 45.0% |
| !!! | AAAAATACTATTTTAAATTT+TGG | - | chr8.3:78822885-78822904 | MS.gene020239:intron | 5.0% |
| AACAGACCAACCAAAGCTGC+AGG | + | chr8.3:78823668-78823687 | None:intergenic | 50.0% | |
| AAGTTGACCAACAGCACCAG+AGG | + | chr8.3:78822611-78822630 | None:intergenic | 50.0% | |
| ACAGACCAACCAAAGCTGCA+GGG | + | chr8.3:78823667-78823686 | None:intergenic | 50.0% | |
| ATGGCCAAGGACACTATTGC+AGG | - | chr8.3:78821198-78821217 | MS.gene020239:CDS | 50.0% | |
| CAATAGTGTCCTTGGCCATC+AGG | + | chr8.3:78821197-78821216 | None:intergenic | 50.0% | |
| CCAGCATAAGCAGTCATTCC+CGG | + | chr8.3:78822535-78822554 | None:intergenic | 50.0% | |
| CCCACCAAAATTGACACCGA+GGG | + | chr8.3:78821550-78821569 | None:intergenic | 50.0% | |
| GACACTATTGCAGGACTTGG+TGG | - | chr8.3:78821207-78821226 | MS.gene020239:CDS | 50.0% | |
| GTCCCGCTTTCCTACTATAC+TGG | - | chr8.3:78822395-78822414 | MS.gene020239:CDS | 50.0% | |
| TCTGAGAATCCTGATGGCCA+AGG | - | chr8.3:78821185-78821204 | MS.gene020239:CDS | 50.0% | |
| !! | GGTGCTGTTGGTCAACTTGT+TGG | - | chr8.3:78822613-78822632 | MS.gene020239:intron | 50.0% |
| !! | TTGGCATGTGGTGTTGGTTC+AGG | - | chr8.3:78821491-78821510 | MS.gene020239:intron | 50.0% |
| !!! | CCCTCGGTGTCAATTTTGGT+GGG | - | chr8.3:78821547-78821566 | MS.gene020239:intron | 50.0% |
| !!! | TCCCTCGGTGTCAATTTTGG+TGG | - | chr8.3:78821546-78821565 | MS.gene020239:intron | 50.0% |
| AACCCCATCGTCCACTTGCA+GGG | + | chr8.3:78821612-78821631 | None:intergenic | 55.0% | |
| ACACCACATGCCAACCCAAG+TGG | + | chr8.3:78821485-78821504 | None:intergenic | 55.0% | |
| CACCACATGCCAACCCAAGT+GGG | + | chr8.3:78821484-78821503 | None:intergenic | 55.0% | |
| CCGGGAATGACTGCTTATGC+TGG | - | chr8.3:78822532-78822551 | MS.gene020239:intron | 55.0% | |
| GCCCACCAAAATTGACACCG+AGG | + | chr8.3:78821551-78821570 | None:intergenic | 55.0% | |
| TGAGAATGGCCCTGCAGCTT+TGG | - | chr8.3:78823655-78823674 | MS.gene020239:CDS | 55.0% | |
| TGTCGGACACCAACACGTGT+TGG | + | chr8.3:78823161-78823180 | None:intergenic | 55.0% | |
| TTAAACGAGCCCCCTGCAAG+TGG | - | chr8.3:78821598-78821617 | MS.gene020239:intron | 55.0% | |
| ! | AATGGCCCTGCAGCTTTGGT+TGG | - | chr8.3:78823659-78823678 | MS.gene020239:CDS | 55.0% |
| !! | AACCCACTTGGGTTGGCATG+TGG | - | chr8.3:78821479-78821498 | MS.gene020239:intron | 55.0% |
| !! | CTTGGGTTGGCATGTGGTGT+TGG | - | chr8.3:78821485-78821504 | MS.gene020239:intron | 55.0% |
| !! | TCATCTGCCTCTGGTGCTGT+TGG | - | chr8.3:78822601-78822620 | MS.gene020239:intron | 55.0% |
| ACCCCATCGTCCACTTGCAG+GGG | + | chr8.3:78821611-78821630 | None:intergenic | 60.0% | |
| CAACCCCATCGTCCACTTGC+AGG | + | chr8.3:78821613-78821632 | None:intergenic | 60.0% | |
| CACACACAGGTATGCGCCCA+TGG | + | chr8.3:78823442-78823461 | None:intergenic | 60.0% | |
| CATGGGCGCATACCTGTGTG+TGG | - | chr8.3:78823440-78823459 | MS.gene020239:intron | 60.0% | |
| CTGCAAGTGGACGATGGGGT+TGG | - | chr8.3:78821611-78821630 | MS.gene020239:intron | 60.0% | |
| AGCCCCCTGCAAGTGGACGA+TGG | - | chr8.3:78821605-78821624 | MS.gene020239:intron | 65.0% | |
| CCCCATCGTCCACTTGCAGG+GGG | + | chr8.3:78821610-78821629 | None:intergenic | 65.0% | |
| CCCCCTGCAAGTGGACGATG+GGG | - | chr8.3:78821607-78821626 | MS.gene020239:intron | 65.0% | |
| GCCCCCTGCAAGTGGACGAT+GGG | - | chr8.3:78821606-78821625 | MS.gene020239:intron | 65.0% | |
| !! | GGACTTGGTGGTCTCACCCC+TGG | - | chr8.3:78821219-78821238 | MS.gene020239:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78821021 | 78823736 | 78821021 | ID=MS.gene020239 |
| chr8.3 | mRNA | 78821021 | 78823736 | 78821021 | ID=MS.gene020239.t1;Parent=MS.gene020239 |
| chr8.3 | exon | 78823512 | 78823736 | 78823512 | ID=MS.gene020239.t1.exon1;Parent=MS.gene020239.t1 |
| chr8.3 | CDS | 78823512 | 78823736 | 78823512 | ID=cds.MS.gene020239.t1;Parent=MS.gene020239.t1 |
| chr8.3 | exon | 78822332 | 78822509 | 78822332 | ID=MS.gene020239.t1.exon2;Parent=MS.gene020239.t1 |
| chr8.3 | CDS | 78822332 | 78822509 | 78822332 | ID=cds.MS.gene020239.t1;Parent=MS.gene020239.t1 |
| chr8.3 | exon | 78822064 | 78822230 | 78822064 | ID=MS.gene020239.t1.exon3;Parent=MS.gene020239.t1 |
| chr8.3 | CDS | 78822064 | 78822230 | 78822064 | ID=cds.MS.gene020239.t1;Parent=MS.gene020239.t1 |
| chr8.3 | exon | 78821700 | 78821782 | 78821700 | ID=MS.gene020239.t1.exon4;Parent=MS.gene020239.t1 |
| chr8.3 | CDS | 78821700 | 78821782 | 78821700 | ID=cds.MS.gene020239.t1;Parent=MS.gene020239.t1 |
| chr8.3 | exon | 78821021 | 78821399 | 78821021 | ID=MS.gene020239.t1.exon5;Parent=MS.gene020239.t1 |
| chr8.3 | CDS | 78821021 | 78821399 | 78821021 | ID=cds.MS.gene020239.t1;Parent=MS.gene020239.t1 |
| Gene Sequence |
| Protein sequence |
