AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022721


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022721.t1 MTR_8g009820 95.335 343 16 0 1 343 60 402 0.0 672
MS.gene022721.t1 MTR_8g009840 87.834 337 40 1 1 337 1 336 0.0 617
MS.gene022721.t1 MTR_8g009830 86.006 343 47 1 1 343 1 342 0.0 610
MS.gene022721.t1 MTR_8g010030 84.012 344 54 1 1 343 1 344 0.0 597
MS.gene022721.t1 MTR_8g009980 80.870 345 63 2 1 343 1 344 0.0 570
MS.gene022721.t1 MTR_8g010020 77.843 343 45 1 1 343 1 312 0.0 543
MS.gene022721.t1 MTR_8g010000 73.913 345 62 3 1 343 1 319 0.0 514
MS.gene022721.t1 MTR_4g082970 67.544 342 108 2 4 343 10 350 1.48e-166 468
MS.gene022721.t1 MTR_8g007325 95.413 218 10 0 1 218 1 218 2.35e-152 427
MS.gene022721.t1 MTR_7g406860 61.047 344 133 1 1 343 3 346 1.65e-147 420
MS.gene022721.t1 MTR_0011s0280 47.688 346 175 2 3 343 2 346 6.32e-113 332
MS.gene022721.t1 MTR_2g088190 41.329 346 191 7 4 340 5 347 1.16e-79 247
MS.gene022721.t1 MTR_2g088220 43.434 297 159 6 30 318 31 326 2.46e-73 231
MS.gene022721.t1 MTR_2g088200 38.769 325 186 7 4 318 5 326 1.90e-69 221
MS.gene022721.t1 MTR_5g095030 57.812 128 54 0 214 341 9 136 8.67e-50 163
MS.gene022721.t1 MTR_4g086410 33.333 243 147 6 105 340 388 622 1.18e-26 111
MS.gene022721.t1 MTR_4g086400 35.407 209 127 5 138 340 276 482 2.41e-26 109
MS.gene022721.t1 MTR_4g086400 35.407 209 127 5 138 340 416 622 3.71e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022721.t1 AT5G16970 70.760 342 95 3 6 343 5 345 2.09e-179 500
MS.gene022721.t1 AT3G03080 71.304 345 95 2 2 343 7 350 2.57e-178 498
MS.gene022721.t1 AT1G26320 71.221 344 94 3 4 343 9 351 3.32e-178 498
MS.gene022721.t1 AT5G17000 70.760 342 95 3 6 343 5 345 1.16e-177 496
MS.gene022721.t1 AT5G16990 69.795 341 99 4 6 343 4 343 2.74e-174 488
MS.gene022721.t1 AT1G26320 70.058 344 93 4 4 343 9 346 1.13e-173 486
MS.gene022721.t1 AT5G37980 66.472 343 109 3 6 343 12 353 9.35e-170 476
MS.gene022721.t1 AT5G37940 65.889 343 111 3 6 343 12 353 1.96e-168 473
MS.gene022721.t1 AT5G16960 66.377 345 111 3 1 341 1 344 3.77e-167 469
MS.gene022721.t1 AT5G16960 66.377 345 111 3 1 341 1 344 3.77e-167 469
MS.gene022721.t1 AT5G38000 64.516 341 115 3 6 341 12 351 3.34e-163 460
MS.gene022721.t1 AT5G38000 63.798 337 113 4 6 334 12 347 1.04e-157 446
MS.gene022721.t1 AT3G59845 64.348 345 113 6 4 341 5 346 6.53e-155 438
MS.gene022721.t1 AT5G38000 60.704 341 109 4 6 341 12 332 1.72e-147 419
MS.gene022721.t1 AT1G65560 58.841 345 136 5 4 343 7 350 1.84e-135 389
MS.gene022721.t1 AT5G16980 58.309 343 105 4 1 343 1 305 2.71e-134 385
MS.gene022721.t1 AT5G16980 76.106 226 54 0 118 343 14 239 8.77e-125 358
MS.gene022721.t1 AT5G16980 76.106 226 54 0 118 343 14 239 8.77e-125 358
MS.gene022721.t1 AT3G59845 71.020 245 69 2 98 341 1 244 1.60e-121 350
MS.gene022721.t1 AT1G65560 61.255 271 101 3 77 343 4 274 2.87e-113 330
MS.gene022721.t1 AT5G17000 69.725 218 61 3 6 219 5 221 1.04e-106 312
MS.gene022721.t1 AT1G49670 35.407 209 127 5 138 340 412 618 8.28e-26 108
MS.gene022721.t1 AT1G49670 35.468 203 123 5 144 340 441 641 1.42e-24 105
MS.gene022721.t1 AT5G37960 54.667 75 34 0 264 338 27 101 1.43e-18 80.5

Find 84 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTTCTTTGTAGTTAA+AGG 0.159741 8.3:+78980584 None:intergenic
AACCATGCAATTTGGCAAAT+TGG 0.212138 8.3:+78980960 None:intergenic
TAGTTTGGGGAATGACTAAA+TGG 0.237323 8.3:-78981281 MS.gene022721:CDS
TCATCTTTATACAAAATTCT+TGG 0.259580 8.3:-78980028 MS.gene022721:CDS
ACCTGAAGGTGTCACAAATT+TGG 0.261566 8.3:-78980106 MS.gene022721:CDS
AAAACTGTCTCTCCTTTCTT+AGG 0.278383 8.3:+78981022 None:intergenic
AAGTAAATGTCGATGCCTTC+TGG 0.282317 8.3:+78980231 None:intergenic
AAATCATCTTTCTTATAATC+TGG 0.299191 8.3:+78981303 None:intergenic
TAAGAAAGATGATTTAGTTT+GGG 0.308474 8.3:-78981295 MS.gene022721:CDS
GCCAAATTTGTGACACCTTC+AGG 0.309515 8.3:+78980105 None:intergenic
ATAAGAAAGATGATTTAGTT+TGG 0.311139 8.3:-78981296 MS.gene022721:CDS
AACATAGCAACCATGCAATT+TGG 0.315125 8.3:+78980952 None:intergenic
TTGAAAAGTATTTCAGTTGC+AGG 0.321684 8.3:+78981240 None:intergenic
TGAGAATGGCCCTGCAGCTT+TGG 0.335929 8.3:-78979941 MS.gene022721:CDS
GGTGCTGTTGGTCAACTTGT+TGG 0.364308 8.3:-78980983 MS.gene022721:CDS
TGCTATGTTGTTGGAAGTGC+TGG 0.374726 8.3:-78980938 MS.gene022721:CDS
CCAGCATAAGCGGTCATTCC+CGG 0.378844 8.3:+78981064 None:intergenic
CAATAGTGTCCTTGGCCATC+AGG 0.381937 8.3:+78982402 None:intergenic
TTGCAGCCATTGACAGGATT+AGG 0.387244 8.3:-78981354 MS.gene022721:intron
GTCCCGCTTTCCTACTATAC+TGG 0.392986 8.3:-78981201 MS.gene022721:CDS
TTTGAGCAGAACCACATCAT+TGG 0.403230 8.3:+78982460 None:intergenic
GTGTCTAAAGTTGTAGAATC+TGG 0.408050 8.3:-78981330 MS.gene022721:CDS
TCCTACTATACTGGAATTCT+CGG 0.415079 8.3:-78981192 MS.gene022721:intron
GCTTTGGTTGGTCTGTTTAG+TGG 0.421611 8.3:-78979925 MS.gene022721:CDS
GGACTTGGTGGTCTCACCCC+TGG 0.422269 8.3:-78982377 MS.gene022721:CDS
ATATCATATATAAGCGGATT+CGG 0.434543 8.3:-78980080 MS.gene022721:CDS
ATGGCCAAGGACACTATTGC+AGG 0.448653 8.3:-78982398 MS.gene022721:CDS
ACGTTCATGTCTGATTCTAT+AGG 0.452868 8.3:+78982521 None:intergenic
GAGTAATTGCAGCCATTGAC+AGG 0.454761 8.3:-78981360 MS.gene022721:intron
AGAAGGAAAGGTTGTGTATG+TGG 0.461025 8.3:-78979983 MS.gene022721:CDS
AATGGCCCTGCAGCTTTGGT+TGG 0.462636 8.3:-78979937 MS.gene022721:CDS
TCATCTGCCTCTGGTGCTGT+TGG 0.469392 8.3:-78980995 MS.gene022721:CDS
TAAATGGGAAGAGTATAGTT+TGG 0.470092 8.3:-78981265 MS.gene022721:CDS
TATGCTGGTTTCTTTGAAGT+AGG 0.475286 8.3:-78981049 MS.gene022721:CDS
ACCTCGATGCAGCTTTGAAA+AGG 0.476543 8.3:-78980560 MS.gene022721:intron
TTGCATGGTTGCTATGTTGT+TGG 0.478375 8.3:-78980947 MS.gene022721:CDS
TTGTTTGAGTACAGGTATGC+CGG 0.481096 8.3:-78981083 MS.gene022721:intron
GACACTATTGCAGGACTTGG+TGG 0.484411 8.3:-78982389 MS.gene022721:CDS
AACAGACCAACCAAAGCTGC+AGG 0.494837 8.3:+78979931 None:intergenic
ACCGAGAATTCCAGTATAGT+AGG 0.503877 8.3:+78981191 None:intergenic
CCGGGAATGACCGCTTATGC+TGG 0.510001 8.3:-78981064 MS.gene022721:CDS
AAGTCCTGCAATAGTGTCCT+TGG 0.515317 8.3:+78982394 None:intergenic
AAGAAAGATGATTTAGTTTG+GGG 0.523463 8.3:-78981294 MS.gene022721:CDS
GTCTCTTATAAGAGAAGGAA+AGG 0.527141 8.3:-78979995 MS.gene022721:CDS
CTGTTTAGTGGTCAAAATGT+TGG 0.532048 8.3:-78979913 MS.gene022721:CDS
ATAGCTGAGGGTCTTGAGAA+TGG 0.533886 8.3:-78979955 MS.gene022721:CDS
GCCATCAGGATTCTCAGATA+AGG 0.534182 8.3:+78982416 None:intergenic
CTCTTGAATATGAAACTCCA+TGG 0.534749 8.3:-78980174 MS.gene022721:CDS
GAAGTAGGCTCTCCTAAGAA+AGG 0.539150 8.3:-78981034 MS.gene022721:CDS
TGAAAAGTATTTCAGTTGCA+GGG 0.540772 8.3:+78981241 None:intergenic
GACATTTACTTTGAGAACGT+TGG 0.545762 8.3:-78980219 MS.gene022721:CDS
TTCCAGTATAGTAGGAAAGC+GGG 0.546840 8.3:+78981199 None:intergenic
GACACTCCTAATCCTGTCAA+TGG 0.548059 8.3:+78981348 None:intergenic
GTATTGTCTCTTATAAGAGA+AGG 0.553750 8.3:-78980000 MS.gene022721:CDS
AGTTTGGGGAATGACTAAAT+GGG 0.554508 8.3:-78981280 MS.gene022721:CDS
CACACACAGGTATGCGCCCA+TGG 0.561199 8.3:+78980157 None:intergenic
ATTTACTTTGAGAACGTTGG+AGG 0.562529 8.3:-78980216 MS.gene022721:CDS
TTCAAAGAAACCAGCATAAG+CGG 0.566265 8.3:+78981054 None:intergenic
TGTTTGAGTACAGGTATGCC+GGG 0.570748 8.3:-78981082 MS.gene022721:intron
GGCCAATTTGCCAAATTGCA+TGG 0.571871 8.3:-78980962 MS.gene022721:CDS
TCTGAGAATCCTGATGGCCA+AGG 0.573459 8.3:-78982411 MS.gene022721:CDS
CATATATAAGCGGATTCGGA+TGG 0.577990 8.3:-78980076 MS.gene022721:CDS
TCCACAAGGTTCCAATGATG+TGG 0.578841 8.3:-78982471 MS.gene022721:CDS
AAGGACACTATTGCAGGACT+TGG 0.579832 8.3:-78982392 MS.gene022721:CDS
GATTCTCAGATAAGGATCAC+AGG 0.585432 8.3:+78982424 None:intergenic
TATAAGCGGATTCGGATGGA+AGG 0.599880 8.3:-78980072 MS.gene022721:CDS
ATAGCATGACATACAGAACC+AGG 0.609222 8.3:+78982359 None:intergenic
AAGTGCTGGAAGTAAAGAGA+AGG 0.616160 8.3:-78980924 MS.gene022721:intron
TCCTTATCTGAGAATCCTGA+TGG 0.619794 8.3:-78982417 MS.gene022721:CDS
TAAACTAGATACTTTCCAGA+AGG 0.622571 8.3:-78980246 MS.gene022721:intron
ACCACATCATTGGAACCTTG+TGG 0.628337 8.3:+78982470 None:intergenic
TCTTGAATATGAAACTCCAT+GGG 0.636007 8.3:-78980173 MS.gene022721:CDS
AAGTTGACCAACAGCACCAG+AGG 0.637825 8.3:+78980988 None:intergenic
ATTCCAGTATAGTAGGAAAG+CGG 0.640802 8.3:+78981198 None:intergenic
TGGCACATATCATATATAAG+CGG 0.642495 8.3:-78980086 MS.gene022721:CDS
ATTACTCTCAAGCTTCCACA+AGG 0.648436 8.3:-78982485 MS.gene022721:CDS
TACAATCTTACTCAACCTGA+AGG 0.650544 8.3:-78980120 MS.gene022721:CDS
ACAGACCAACCAAAGCTGCA+GGG 0.668442 8.3:+78979932 None:intergenic
CATGGGCGCATACCTGTGTG+TGG 0.680594 8.3:-78980156 MS.gene022721:CDS
AGCATGACATACAGAACCAG+GGG 0.683293 8.3:+78982361 None:intergenic
TGTGAGATCATTCCACACAC+AGG 0.692179 8.3:+78980144 None:intergenic
TAGCATGACATACAGAACCA+GGG 0.696996 8.3:+78982360 None:intergenic
GTATGTGGAAGACATAGCTG+AGG 0.744288 8.3:-78979968 MS.gene022721:CDS
TATGTGGAAGACATAGCTGA+GGG 0.752621 8.3:-78979967 MS.gene022721:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATGTATAAAATTTACTT+TGG - chr8.3:78980258-78980277 MS.gene022721:intron 10.0%
!! TTATGTATAAAATTTACTTT+GGG - chr8.3:78980259-78980278 MS.gene022721:intron 10.0%
!! AATTGAATTTAACATTTCAA+AGG - chr8.3:78980212-78980231 MS.gene022721:CDS 15.0%
!! TATTCATTTAGTATAATTAC+AGG + chr8.3:78981799-78981818 None:intergenic 15.0%
!!! ATACTTTGTCTTTTAAAATT+AGG + chr8.3:78980238-78980257 None:intergenic 15.0%
!!! GATTTGTTGAAAAATAAATT+TGG - chr8.3:78981839-78981858 MS.gene022721:intron 15.0%
!!! TTTTTTTTTGTTTGTAAACT+TGG + chr8.3:78980530-78980549 None:intergenic 15.0%
!! AAAGTTAGTTATAATGTGTA+TGG + chr8.3:78980972-78980991 None:intergenic 20.0%
!! AAATCATCTTTCTTATAATC+TGG + chr8.3:78981157-78981176 None:intergenic 20.0%
!! AAGTAACTATAATGAAGTTA+TGG - chr8.3:78981020-78981039 MS.gene022721:CDS 20.0%
!! AATATCAAGGCTATAAATAA+TGG - chr8.3:78980819-78980838 MS.gene022721:intron 20.0%
!! ACATTTGATTAATCATTCTA+CGG - chr8.3:78981628-78981647 MS.gene022721:intron 20.0%
!! ATAAGAAAGATGATTTAGTT+TGG - chr8.3:78981161-78981180 MS.gene022721:intron 20.0%
!! ATTATTATTTGTGTGTATGT+AGG - chr8.3:78982111-78982130 MS.gene022721:intron 20.0%
!! CATACACACAAATAATAATT+TGG + chr8.3:78982110-78982129 None:intergenic 20.0%
!! CATTATAGTTACTTAGTTTA+TGG + chr8.3:78981014-78981033 None:intergenic 20.0%
!! TCATCTTTATACAAAATTCT+TGG - chr8.3:78982429-78982448 MS.gene022721:CDS 20.0%
!! TTAGTATAATTACAGGATAA+TGG + chr8.3:78981792-78981811 None:intergenic 20.0%
!!! CTATTTTAAATTTTGGAAAC+CGG - chr8.3:78981753-78981772 MS.gene022721:intron 20.0%
!!! TAAGAAAGATGATTTAGTTT+GGG - chr8.3:78981162-78981181 MS.gene022721:intron 20.0%
! AGTTGCATTAGATAATATAG+AGG - chr8.3:78980730-78980749 MS.gene022721:intron 25.0%
! ATCATAATCTTTACCTACTT+GGG + chr8.3:78980705-78980724 None:intergenic 25.0%
! ATTATTTAATGACCCAAGAA+AGG - chr8.3:78980661-78980680 MS.gene022721:intron 25.0%
! CTTCATAGATAGTTATTACT+TGG - chr8.3:78982147-78982166 MS.gene022721:intron 25.0%
! TAATGGTTGTAATTATGTAC+CGG + chr8.3:78981775-78981794 None:intergenic 25.0%
! TGTAATCTGTTTAGAGAAAA+TGG + chr8.3:78980576-78980595 None:intergenic 25.0%
! TGTTAATTCATCATTTATGC+AGG + chr8.3:78981605-78981624 None:intergenic 25.0%
! TTTCTCTTCTTTGTAGTTAA+AGG + chr8.3:78981876-78981895 None:intergenic 25.0%
!! AAGGAGAAATTACTCTAAAA+AGG + chr8.3:78980923-78980942 None:intergenic 25.0%
!! ATATCATATATAAGCGGATT+CGG - chr8.3:78982377-78982396 MS.gene022721:CDS 25.0%
!!! AAGAAAGATGATTTAGTTTG+GGG - chr8.3:78981163-78981182 MS.gene022721:intron 25.0%
!!! TTGTTGTTGCTTTTGAAATT+AGG - chr8.3:78980172-78980191 MS.gene022721:CDS 25.0%
CATCATAATCTTTACCTACT+TGG + chr8.3:78980706-78980725 None:intergenic 30.0%
GAATATAATTATGACACACC+AGG - chr8.3:78981814-78981833 MS.gene022721:intron 30.0%
GCAATAATGTTTGATTAGTG+TGG + chr8.3:78980319-78980338 None:intergenic 30.0%
GCATCAACACTTTATATTCA+AGG - chr8.3:78981991-78982010 MS.gene022721:intron 30.0%
GTATTGTCTCTTATAAGAGA+AGG - chr8.3:78982457-78982476 MS.gene022721:CDS 30.0%
GTGAAGTTGTTAGAATATCA+AGG - chr8.3:78980806-78980825 MS.gene022721:intron 30.0%
TAAACTAGATACTTTCCAGA+AGG - chr8.3:78982211-78982230 MS.gene022721:intron 30.0%
TATTATCTTGAGCCTTTCTT+GGG + chr8.3:78980676-78980695 None:intergenic 30.0%
TCTTGAATATGAAACTCCAT+GGG - chr8.3:78982284-78982303 MS.gene022721:intron 30.0%
TGGCACATATCATATATAAG+CGG - chr8.3:78982371-78982390 MS.gene022721:intron 30.0%
TTGTTTGTAAACTTGGTATC+CGG + chr8.3:78980523-78980542 None:intergenic 30.0%
! CATTCATGAATAGTTTGTCT+TGG - chr8.3:78980137-78980156 MS.gene022721:CDS 30.0%
! TAAATGGGAAGAGTATAGTT+TGG - chr8.3:78981192-78981211 MS.gene022721:intron 30.0%
!! GAATATAAAGTGTTGATGCT+AGG + chr8.3:78981990-78982009 None:intergenic 30.0%
!! TAGTTTGTCTTGGATTTTGA+AGG - chr8.3:78980147-78980166 MS.gene022721:CDS 30.0%
!! TATTTTTCAACAAATCCACC+TGG + chr8.3:78981835-78981854 None:intergenic 30.0%
!! TGAAAAGTATTTCAGTTGCA+GGG + chr8.3:78981219-78981238 None:intergenic 30.0%
!! TTGAAAAGTATTTCAGTTGC+AGG + chr8.3:78981220-78981239 None:intergenic 30.0%
!! TTGTGTTTTTGTTTGAGTAC+AGG - chr8.3:78981366-78981385 MS.gene022721:intron 30.0%
!!! GTCTGTTTCTAACAGTTTTA+TGG - chr8.3:78981919-78981938 MS.gene022721:intron 30.0%
!!! TGCTTTTGAAATTAGGAAGT+GGG - chr8.3:78980179-78980198 MS.gene022721:CDS 30.0%
!!! TTGCTTTTGAAATTAGGAAG+TGG - chr8.3:78980178-78980197 MS.gene022721:CDS 30.0%
AAAACTGTCTCTCCTTTCTT+AGG + chr8.3:78981438-78981457 None:intergenic 35.0%
AACATAGCAACCATGCAATT+TGG + chr8.3:78981508-78981527 None:intergenic 35.0%
AACATTATTGCTAACCCACT+TGG - chr8.3:78980328-78980347 MS.gene022721:intron 35.0%
AACCATGCAATTTGGCAAAT+TGG + chr8.3:78981500-78981519 None:intergenic 35.0%
ACATTATTGCTAACCCACTT+GGG - chr8.3:78980329-78980348 MS.gene022721:intron 35.0%
ACGTTCATGTCTGATTCTAT+AGG + chr8.3:78979939-78979958 None:intergenic 35.0%
AGTAATTTCTCCTTCCTTGT+AGG - chr8.3:78980929-78980948 MS.gene022721:CDS 35.0%
AGTTTGGGGAATGACTAAAT+GGG - chr8.3:78981177-78981196 MS.gene022721:intron 35.0%
ATTCCAGTATAGTAGGAAAG+CGG + chr8.3:78981262-78981281 None:intergenic 35.0%
CTATTATCTTGAGCCTTTCT+TGG + chr8.3:78980677-78980696 None:intergenic 35.0%
CTCTTGAATATGAAACTCCA+TGG - chr8.3:78982283-78982302 MS.gene022721:intron 35.0%
CTGTTTAGTGGTCAAAATGT+TGG - chr8.3:78982544-78982563 MS.gene022721:CDS 35.0%
GATAATAGAATAGCCCAAGT+AGG - chr8.3:78980689-78980708 MS.gene022721:intron 35.0%
GTCTCTTATAAGAGAAGGAA+AGG - chr8.3:78982462-78982481 MS.gene022721:CDS 35.0%
GTTAAGAGAAGCAAACTCTA+AGG + chr8.3:78980379-78980398 None:intergenic 35.0%
GTTGGACTCTTTAGATTAGT+TGG - chr8.3:78980490-78980509 MS.gene022721:intron 35.0%
TACAATCTTACTCAACCTGA+AGG - chr8.3:78982337-78982356 MS.gene022721:intron 35.0%
TAGTTTGGGGAATGACTAAA+TGG - chr8.3:78981176-78981195 MS.gene022721:intron 35.0%
TATAATTATGACACACCAGG+TGG - chr8.3:78981817-78981836 MS.gene022721:intron 35.0%
TCCTACTATACTGGAATTCT+CGG - chr8.3:78981265-78981284 MS.gene022721:CDS 35.0%
TGTCATGAATCACAACGAAA+TGG + chr8.3:78981342-78981361 None:intergenic 35.0%
TTCAAAGAAACCAGCATAAG+CGG + chr8.3:78981406-78981425 None:intergenic 35.0%
! ATTTACTTTGAGAACGTTGG+AGG - chr8.3:78982241-78982260 MS.gene022721:intron 35.0%
! GACATTTACTTTGAGAACGT+TGG - chr8.3:78982238-78982257 MS.gene022721:intron 35.0%
! GGATAGTGGTTATTGTAGTT+AGG + chr8.3:78981680-78981699 None:intergenic 35.0%
! GTGTCTAAAGTTGTAGAATC+TGG - chr8.3:78981127-78981146 MS.gene022721:intron 35.0%
!! ATGGTTACAGTTTGTTGACT+GGG - chr8.3:78981039-78981058 MS.gene022721:CDS 35.0%
!! ATTTTGAGAGACTATGTGTC+TGG - chr8.3:78979909-78979928 MS.gene022721:CDS 35.0%
!! CTAGATCCTTCTAAAACATG+AGG + chr8.3:78980761-78980780 None:intergenic 35.0%
!! TAGATTAGTTGGTCTTAAGC+CGG - chr8.3:78980501-78980520 MS.gene022721:intron 35.0%
!! TATGCTGGTTTCTTTGAAGT+AGG - chr8.3:78981408-78981427 MS.gene022721:intron 35.0%
!! TATGGTTACAGTTTGTTGAC+TGG - chr8.3:78981038-78981057 MS.gene022721:CDS 35.0%
!!! GCTTTTGAAATTAGGAAGTG+GGG - chr8.3:78980180-78980199 MS.gene022721:CDS 35.0%
AAGTAAATGTCGATGCCTTC+TGG + chr8.3:78982229-78982248 None:intergenic 40.0%
ACCGAGAATTCCAGTATAGT+AGG + chr8.3:78981269-78981288 None:intergenic 40.0%
AGAAGGAAAGGTTGTGTATG+TGG - chr8.3:78982474-78982493 MS.gene022721:CDS 40.0%
ATAGCATGACATACAGAACC+AGG + chr8.3:78980101-78980120 None:intergenic 40.0%
ATTACTCTCAAGCTTCCACA+AGG - chr8.3:78979972-78979991 MS.gene022721:CDS 40.0%
CACATGTGACATTGTTGTGT+TGG + chr8.3:78982062-78982081 None:intergenic 40.0%
CACCTACGACTCATCATAAT+GGG + chr8.3:78980789-78980808 None:intergenic 40.0%
CTGCCGTTAAAGTGACATAT+TGG + chr8.3:78981065-78981084 None:intergenic 40.0%
GATTCTCAGATAAGGATCAC+AGG + chr8.3:78980036-78980055 None:intergenic 40.0%
TAGCATGACATACAGAACCA+GGG + chr8.3:78980100-78980119 None:intergenic 40.0%
TATGTGGAAGACATAGCTGA+GGG - chr8.3:78982490-78982509 MS.gene022721:CDS 40.0%
TCAACAAGTGAGCAAAGACT+TGG + chr8.3:78981701-78981720 None:intergenic 40.0%
TCACCTACGACTCATCATAA+TGG + chr8.3:78980790-78980809 None:intergenic 40.0%
TCCTTATCTGAGAATCCTGA+TGG - chr8.3:78980040-78980059 MS.gene022721:CDS 40.0%
TCTTAACGTTTCGATTCCCT+CGG - chr8.3:78980392-78980411 MS.gene022721:intron 40.0%
TTCCAGTATAGTAGGAAAGC+GGG + chr8.3:78981261-78981280 None:intergenic 40.0%
TTGCATGGTTGCTATGTTGT+TGG - chr8.3:78981510-78981529 MS.gene022721:intron 40.0%
TTGTTTGAGTACAGGTATGC+CGG - chr8.3:78981374-78981393 MS.gene022721:intron 40.0%
TTTGAGCAGAACCACATCAT+TGG + chr8.3:78980000-78980019 None:intergenic 40.0%
! AAGTCTTTGCTCACTTGTTG+AGG - chr8.3:78981700-78981719 MS.gene022721:intron 40.0%
! CATATATAAGCGGATTCGGA+TGG - chr8.3:78982381-78982400 MS.gene022721:CDS 40.0%
!! AAGTGCTGGAAGTAAAGAGA+AGG - chr8.3:78981533-78981552 MS.gene022721:intron 40.0%
!! ACCTGAAGGTGTCACAAATT+TGG - chr8.3:78982351-78982370 MS.gene022721:intron 40.0%
!! GGGCCAATATGTCACTTTAA+CGG - chr8.3:78981059-78981078 MS.gene022721:CDS 40.0%
!! GTGAGTCCTCATGTTTTAGA+AGG - chr8.3:78980752-78980771 MS.gene022721:intron 40.0%
!! GTGTATGGTACCACTTTTGA+TGG + chr8.3:78980957-78980976 None:intergenic 40.0%
!! GTTTTTGTTTCATCTGCCTC+TGG - chr8.3:78981453-78981472 MS.gene022721:intron 40.0%
AAGGACACTATTGCAGGACT+TGG - chr8.3:78980065-78980084 MS.gene022721:CDS 45.0%
AAGTCCTGCAATAGTGTCCT+TGG + chr8.3:78980066-78980085 None:intergenic 45.0%
ACCACATCATTGGAACCTTG+TGG + chr8.3:78979990-78980009 None:intergenic 45.0%
AGCATGACATACAGAACCAG+GGG + chr8.3:78980099-78980118 None:intergenic 45.0%
AGCCAGAGCAAGACTATGTA+TGG + chr8.3:78980439-78980458 None:intergenic 45.0%
ATAGCTGAGGGTCTTGAGAA+TGG - chr8.3:78982502-78982521 MS.gene022721:CDS 45.0%
CACCCATTATGATGAGTCGT+AGG - chr8.3:78980784-78980803 MS.gene022721:intron 45.0%
GAAGTAGGCTCTCCTAAGAA+AGG - chr8.3:78981423-78981442 MS.gene022721:intron 45.0%
GACACTCCTAATCCTGTCAA+TGG + chr8.3:78981112-78981131 None:intergenic 45.0%
GAGTAATTGCAGCCATTGAC+AGG - chr8.3:78981097-78981116 MS.gene022721:intron 45.0%
GCCAAATTTGTGACACCTTC+AGG + chr8.3:78982355-78982374 None:intergenic 45.0%
GCCATCAGGATTCTCAGATA+AGG + chr8.3:78980044-78980063 None:intergenic 45.0%
GGCCAATTTGCCAAATTGCA+TGG - chr8.3:78981495-78981514 MS.gene022721:intron 45.0%
GTATGTGGAAGACATAGCTG+AGG - chr8.3:78982489-78982508 MS.gene022721:CDS 45.0%
GTGAGCAAAGACTTGGATAG+TGG + chr8.3:78981694-78981713 None:intergenic 45.0%
TATTGCTAACCCACTTGGGT+TGG - chr8.3:78980333-78980352 MS.gene022721:intron 45.0%
TCCACAAGGTTCCAATGATG+TGG - chr8.3:78979986-78980005 MS.gene022721:CDS 45.0%
TGTCAGACACTAACACGTGT+CGG + chr8.3:78982039-78982058 None:intergenic 45.0%
TGTGAGATCATTCCACACAC+AGG + chr8.3:78982316-78982335 None:intergenic 45.0%
TGTTTGAGTACAGGTATGCC+GGG - chr8.3:78981375-78981394 MS.gene022721:intron 45.0%
TTGCAGCCATTGACAGGATT+AGG - chr8.3:78981103-78981122 MS.gene022721:intron 45.0%
! AAGGTGTTTCCAACACGTGT+TGG - chr8.3:78982010-78982029 MS.gene022721:intron 45.0%
! ACCTTTTCAAAGCTGCATCG+AGG + chr8.3:78981901-78981920 None:intergenic 45.0%
! CTTGTAGGTGCCATCAAAAG+TGG - chr8.3:78980944-78980963 MS.gene022721:CDS 45.0%
! GTCCATACATAGTCTTGCTC+TGG - chr8.3:78980434-78980453 MS.gene022721:intron 45.0%
! TATAAGCGGATTCGGATGGA+AGG - chr8.3:78982385-78982404 MS.gene022721:CDS 45.0%
! TGCTATGTTGTTGGAAGTGC+TGG - chr8.3:78981519-78981538 MS.gene022721:intron 45.0%
! TTTGATGGCACCTACAAGGA+AGG + chr8.3:78980942-78980961 None:intergenic 45.0%
!! ACCTCGATGCAGCTTTGAAA+AGG - chr8.3:78981897-78981916 MS.gene022721:intron 45.0%
!! CACTTTTGATGGCACCTACA+AGG + chr8.3:78980946-78980965 None:intergenic 45.0%
!! GCTTTGGTTGGTCTGTTTAG+TGG - chr8.3:78982532-78982551 MS.gene022721:CDS 45.0%
!!! GATTCCCTCGGTGTCAATTT+TGG - chr8.3:78980404-78980423 MS.gene022721:intron 45.0%
!!! AAAAATACTATTTTAAATTT+TGG - chr8.3:78981746-78981765 MS.gene022721:intron 5.0%
AACAGACCAACCAAAGCTGC+AGG + chr8.3:78982529-78982548 None:intergenic 50.0%
AAGTTGACCAACAGCACCAG+AGG + chr8.3:78981472-78981491 None:intergenic 50.0%
ACAGACCAACCAAAGCTGCA+GGG + chr8.3:78982528-78982547 None:intergenic 50.0%
ATGGCCAAGGACACTATTGC+AGG - chr8.3:78980059-78980078 MS.gene022721:CDS 50.0%
CAATAGTGTCCTTGGCCATC+AGG + chr8.3:78980058-78980077 None:intergenic 50.0%
CCCACCAAAATTGACACCGA+GGG + chr8.3:78980411-78980430 None:intergenic 50.0%
GACACTATTGCAGGACTTGG+TGG - chr8.3:78980068-78980087 MS.gene022721:CDS 50.0%
GTCCCGCTTTCCTACTATAC+TGG - chr8.3:78981256-78981275 MS.gene022721:CDS 50.0%
TCTGAGAATCCTGATGGCCA+AGG - chr8.3:78980046-78980065 MS.gene022721:CDS 50.0%
!! GGTGCTGTTGGTCAACTTGT+TGG - chr8.3:78981474-78981493 MS.gene022721:intron 50.0%
!! TTGGCATGTGGTGTTGGTTC+AGG - chr8.3:78980352-78980371 MS.gene022721:intron 50.0%
!!! CCCTCGGTGTCAATTTTGGT+GGG - chr8.3:78980408-78980427 MS.gene022721:intron 50.0%
!!! TCCCTCGGTGTCAATTTTGG+TGG - chr8.3:78980407-78980426 MS.gene022721:intron 50.0%
AACCCCATCGTCCACTTGCA+GGG + chr8.3:78980473-78980492 None:intergenic 55.0%
ACACCACATGCCAACCCAAG+TGG + chr8.3:78980346-78980365 None:intergenic 55.0%
CACCACATGCCAACCCAAGT+GGG + chr8.3:78980345-78980364 None:intergenic 55.0%
CCAGCATAAGCGGTCATTCC+CGG + chr8.3:78981396-78981415 None:intergenic 55.0%
GCCCACCAAAATTGACACCG+AGG + chr8.3:78980412-78980431 None:intergenic 55.0%
TGAGAATGGCCCTGCAGCTT+TGG - chr8.3:78982516-78982535 MS.gene022721:CDS 55.0%
TGTCGGACACCAACACGTGT+TGG + chr8.3:78982022-78982041 None:intergenic 55.0%
TTAAACGAGCCCCCTGCAAG+TGG - chr8.3:78980459-78980478 MS.gene022721:intron 55.0%
! AATGGCCCTGCAGCTTTGGT+TGG - chr8.3:78982520-78982539 MS.gene022721:CDS 55.0%
!! AACCCACTTGGGTTGGCATG+TGG - chr8.3:78980340-78980359 MS.gene022721:intron 55.0%
!! CTTGGGTTGGCATGTGGTGT+TGG - chr8.3:78980346-78980365 MS.gene022721:intron 55.0%
!! TCATCTGCCTCTGGTGCTGT+TGG - chr8.3:78981462-78981481 MS.gene022721:intron 55.0%
ACCCCATCGTCCACTTGCAG+GGG + chr8.3:78980472-78980491 None:intergenic 60.0%
CAACCCCATCGTCCACTTGC+AGG + chr8.3:78980474-78980493 None:intergenic 60.0%
CACACACAGGTATGCGCCCA+TGG + chr8.3:78982303-78982322 None:intergenic 60.0%
CATGGGCGCATACCTGTGTG+TGG - chr8.3:78982301-78982320 MS.gene022721:intron 60.0%
CCGGGAATGACCGCTTATGC+TGG - chr8.3:78981393-78981412 MS.gene022721:intron 60.0%
CTGCAAGTGGACGATGGGGT+TGG - chr8.3:78980472-78980491 MS.gene022721:intron 60.0%
AGCCCCCTGCAAGTGGACGA+TGG - chr8.3:78980466-78980485 MS.gene022721:intron 65.0%
CCCCATCGTCCACTTGCAGG+GGG + chr8.3:78980471-78980490 None:intergenic 65.0%
CCCCCTGCAAGTGGACGATG+GGG - chr8.3:78980468-78980487 MS.gene022721:intron 65.0%
GCCCCCTGCAAGTGGACGAT+GGG - chr8.3:78980467-78980486 MS.gene022721:intron 65.0%
!! GGACTTGGTGGTCTCACCCC+TGG - chr8.3:78980080-78980099 MS.gene022721:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 78979882 78982597 78979882 ID=MS.gene022721
chr8.3 mRNA 78979882 78982597 78979882 ID=MS.gene022721.t1;Parent=MS.gene022721
chr8.3 exon 78982373 78982597 78982373 ID=MS.gene022721.t1.exon1;Parent=MS.gene022721.t1
chr8.3 CDS 78982373 78982597 78982373 ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1
chr8.3 exon 78981193 78981370 78981193 ID=MS.gene022721.t1.exon2;Parent=MS.gene022721.t1
chr8.3 CDS 78981193 78981370 78981193 ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1
chr8.3 exon 78980925 78981091 78980925 ID=MS.gene022721.t1.exon3;Parent=MS.gene022721.t1
chr8.3 CDS 78980925 78981091 78980925 ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1
chr8.3 exon 78980561 78980643 78980561 ID=MS.gene022721.t1.exon4;Parent=MS.gene022721.t1
chr8.3 CDS 78980561 78980643 78980561 ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1
chr8.3 exon 78979882 78980260 78979882 ID=MS.gene022721.t1.exon5;Parent=MS.gene022721.t1
chr8.3 CDS 78979882 78980260 78979882 ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1
Gene Sequence

>MS.gene022721

ATGGCACAAGTGAGAAACAAGCAAGTTATTTTGAGAGACTATGTGTCTGGTTTTCCTATAGAATCAGACATGAACGTTGTTGATAGTACAATTACTCTCAAGCTTCCACAAGGTTCCAATGATGTGGTTCTGCTCAAAAATCTCTACTTGTCCTGTGATCCTTATCTGAGAATCCTGATGGCCAAGGACACTATTGCAGGACTTGGTGGTCTCACCCCTGGTTCTGTATGTCATGCTATCTCTTTCATCAATTATCATTCATGAATAGTTTGTCTTGGATTTTGAAGGAATTGTTGTTGCTTTTGAAATTAGGAAGTGGGGTGCTGAAAAAATTGAATTTAACATTTCAAAGGCCTAATTTTAAAAGACAAAGTATATTATGTATAAAATTTACTTTGGGTTTCAGCTTAGAGCAATGAACTCTAAGCTTTCATCCACACTAATCAAACATTATTGCTAACCCACTTGGGTTGGCATGTGGTGTTGGTTCAGGACCTTAGAGTTTGCTTCTCTTAACGTTTCGATTCCCTCGGTGTCAATTTTGGTGGGCTAGTCCATACATAGTCTTGCTCTGGCTTTAAACGAGCCCCCTGCAAGTGGACGATGGGGTTGGACTCTTTAGATTAGTTGGTCTTAAGCCGGATACCAAGTTTACAAACAAAAAAAAAATCTAATTTTATTGCTTTTCAATCCATTTTCTCTAAACAGATTACAAATGAATTACAATAGAGTCATTCAAAGTGATCTTGAATCAACTATTTATAGAACTAGTAATTGACATTATTTAATGACCCAAGAAAGGCTCAAGATAATAGAATAGCCCAAGTAGGTAAAGATTATGATGAGTTAGTTGCATTAGATAATATAGAGGTGAGTCCTCATGTTTTAGAAGGATCTAGAGACACCCATTATGATGAGTCGTAGGTGAAGTTGTTAGAATATCAAGGCTATAAATAATGGATTGATCATTGTAATCATTATCAAAAGAATGAACAAAGAAGTTAGTTATGTTAGAATAGTTTTAGTGTAGTTTTTAATCCTTTTTAGAGTAATTTCTCCTTCCTTGTAGGTGCCATCAAAAGTGGTACCATACACATTATAACTAACTTTATCAACAATAAATTGTTAGCCATAAACTAAGTAACTATAATGAAGTTATGGTTACAGTTTGTTGACTGGGCCAATATGTCACTTTAACGGCAGCTACTAACTGATGAGTAATTGCAGCCATTGACAGGATTAGGAGTGTCTAAAGTTGTAGAATCTGGACATCCAGATTATAAGAAAGATGATTTAGTTTGGGGAATGACTAAATGGGAAGAGTATAGTTTGGTCCCTGCAACTGAAATACTTTTCAAAATTGAGCATACAGATGTCCCGCTTTCCTACTATACTGGAATTCTCGGTATGTATTCAACAATTTCAATTTGTATCGATGTTAGTCGCGTAGTTTTCTGCCATTTCGTTGTGATTCATGACATATGTTGTGTTTTTGTTTGAGTACAGGTATGCCGGGAATGACCGCTTATGCTGGTTTCTTTGAAGTAGGCTCTCCTAAGAAAGGAGAGACAGTTTTTGTTTCATCTGCCTCTGGTGCTGTTGGTCAACTTGTTGGCCAATTTGCCAAATTGCATGGTTGCTATGTTGTTGGAAGTGCTGGAAGTAAAGAGAAGGTATTTGTTTGATTATTGTTGTTAGATTATTGTTGTTATATATGCTTCCTGCATAAATGATGAATTAACATCAACATTTGATTAATCATTCTACGGTTTAAAGTAGTGCTATTTTGAATTAGCCTAACTACAATAACCACTATCCAAGTCTTTGCTCACTTGTTGAGGTTAAGTTAGTTTGATTTTGTTACAAAAATACTATTTTAAATTTTGGAAACCGGTACATAATTACAACCATTATCCTGTAATTATACTAAATGAATATAATTATGACACACCAGGTGGATTTGTTGAAAAATAAATTTGGATATGATGAAGCCTTTAACTACAAAGAAGAGAAAGACCTCGATGCAGCTTTGAAAAGGTCTGTTTCTAACAGTTTTATGGTAGATTTTTAATTCAATTTGTTTATTGACAAAAAAAGTATAGTTACCTAGCATCAACACTTTATATTCAAGGTGTTTCCAACACGTGTTGGTGTCCGACACGTGTTAGTGTCTGACACCAACACAACAATGTCACATGTGATTGCATGCACTTACTTCTGTTTTTCCAAATTATTATTTGTGTGTATGTAGGTGTCGTGTTAGTGCTTCATAGATAGTTATTACTTGGTAAAATGAGACACACTAATAACTAGCAGATATCAATTTATGTAAACTAGATACTTTCCAGAAGGCATCGACATTTACTTTGAGAACGTTGGAGGCAAGACACTTGATGCTGTACTCTTGAATATGAAACTCCATGGGCGCATACCTGTGTGTGGAATGATCTCACAGTACAATCTTACTCAACCTGAAGGTGTCACAAATTTGGCACATATCATATATAAGCGGATTCGGATGGAAGGTTTTGCTGTATTTGAATACTATCATCTTTATACAAAATTCTTGGAGTTTGTATTGTCTCTTATAAGAGAAGGAAAGGTTGTGTATGTGGAAGACATAGCTGAGGGTCTTGAGAATGGCCCTGCAGCTTTGGTTGGTCTGTTTAGTGGTCAAAATGTTGGTAAACAAGTGCTTGTTGTTTCTCATGAGTGA

Protein sequence

>MS.gene022721.t1

MAQVRNKQVILRDYVSGFPIESDMNVVDSTITLKLPQGSNDVVLLKNLYLSCDPYLRILMAKDTIAGLGGLTPGSPLTGLGVSKVVESGHPDYKKDDLVWGMTKWEEYSLVPATEILFKIEHTDVPLSYYTGILGMPGMTAYAGFFEVGSPKKGETVFVSSASGAVGQLVGQFAKLHGCYVVGSAGSKEKVDLLKNKFGYDEAFNYKEEKDLDAALKRYFPEGIDIYFENVGGKTLDAVLLNMKLHGRIPVCGMISQYNLTQPEGVTNLAHIIYKRIRMEGFAVFEYYHLYTKFLEFVLSLIREGKVVYVEDIAEGLENGPAALVGLFSGQNVGKQVLVVSHE