Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022721.t1 | RHN38827.1 | 95.9 | 343 | 14 | 0 | 1 | 343 | 60 | 402 | 5.50E-188 | 666.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022721.t1 | Q9SLN8 | 73.3 | 341 | 90 | 1 | 3 | 343 | 4 | 343 | 3.0e-142 | 506.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022721.t1 | A0A396GJ76 | 95.9 | 343 | 14 | 0 | 1 | 343 | 60 | 402 | 4.0e-188 | 666.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene020077 | MS.gene022721 | PPI |
MS.gene069341 | MS.gene022721 | PPI |
MS.gene020033 | MS.gene022721 | PPI |
MS.gene020225 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene41778 | PPI |
MS.gene020076 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene067859 | PPI |
MS.gene39327 | MS.gene022721 | PPI |
MS.gene022737 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene022735 | PPI |
MS.gene39312 | MS.gene022721 | PPI |
MS.gene022722 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene022736 | PPI |
MS.gene020226 | MS.gene022721 | PPI |
MS.gene39326 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene020227 | PPI |
MS.gene022721 | MS.gene069341 | PPI |
MS.gene020228 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene54433 | PPI |
MS.gene022721 | MS.gene45375 | PPI |
MS.gene022721 | MS.gene39314 | PPI |
MS.gene54434 | MS.gene022721 | PPI |
MS.gene020239 | MS.gene022721 | PPI |
MS.gene08162 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene022738 | PPI |
MS.gene39314 | MS.gene022721 | PPI |
MS.gene022721 | MS.gene39313 | PPI |
MS.gene39315 | MS.gene022721 | PPI |
MS.gene54433 | MS.gene022721 | PPI |
MS.gene97874 | MS.gene022721 | PPI |
MS.gene042467 | MS.gene022721 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022721.t1 | MTR_8g009820 | 95.335 | 343 | 16 | 0 | 1 | 343 | 60 | 402 | 0.0 | 672 |
MS.gene022721.t1 | MTR_8g009840 | 87.834 | 337 | 40 | 1 | 1 | 337 | 1 | 336 | 0.0 | 617 |
MS.gene022721.t1 | MTR_8g009830 | 86.006 | 343 | 47 | 1 | 1 | 343 | 1 | 342 | 0.0 | 610 |
MS.gene022721.t1 | MTR_8g010030 | 84.012 | 344 | 54 | 1 | 1 | 343 | 1 | 344 | 0.0 | 597 |
MS.gene022721.t1 | MTR_8g009980 | 80.870 | 345 | 63 | 2 | 1 | 343 | 1 | 344 | 0.0 | 570 |
MS.gene022721.t1 | MTR_8g010020 | 77.843 | 343 | 45 | 1 | 1 | 343 | 1 | 312 | 0.0 | 543 |
MS.gene022721.t1 | MTR_8g010000 | 73.913 | 345 | 62 | 3 | 1 | 343 | 1 | 319 | 0.0 | 514 |
MS.gene022721.t1 | MTR_4g082970 | 67.544 | 342 | 108 | 2 | 4 | 343 | 10 | 350 | 1.48e-166 | 468 |
MS.gene022721.t1 | MTR_8g007325 | 95.413 | 218 | 10 | 0 | 1 | 218 | 1 | 218 | 2.35e-152 | 427 |
MS.gene022721.t1 | MTR_7g406860 | 61.047 | 344 | 133 | 1 | 1 | 343 | 3 | 346 | 1.65e-147 | 420 |
MS.gene022721.t1 | MTR_0011s0280 | 47.688 | 346 | 175 | 2 | 3 | 343 | 2 | 346 | 6.32e-113 | 332 |
MS.gene022721.t1 | MTR_2g088190 | 41.329 | 346 | 191 | 7 | 4 | 340 | 5 | 347 | 1.16e-79 | 247 |
MS.gene022721.t1 | MTR_2g088220 | 43.434 | 297 | 159 | 6 | 30 | 318 | 31 | 326 | 2.46e-73 | 231 |
MS.gene022721.t1 | MTR_2g088200 | 38.769 | 325 | 186 | 7 | 4 | 318 | 5 | 326 | 1.90e-69 | 221 |
MS.gene022721.t1 | MTR_5g095030 | 57.812 | 128 | 54 | 0 | 214 | 341 | 9 | 136 | 8.67e-50 | 163 |
MS.gene022721.t1 | MTR_4g086410 | 33.333 | 243 | 147 | 6 | 105 | 340 | 388 | 622 | 1.18e-26 | 111 |
MS.gene022721.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 138 | 340 | 276 | 482 | 2.41e-26 | 109 |
MS.gene022721.t1 | MTR_4g086400 | 35.407 | 209 | 127 | 5 | 138 | 340 | 416 | 622 | 3.71e-26 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022721.t1 | AT5G16970 | 70.760 | 342 | 95 | 3 | 6 | 343 | 5 | 345 | 2.09e-179 | 500 |
MS.gene022721.t1 | AT3G03080 | 71.304 | 345 | 95 | 2 | 2 | 343 | 7 | 350 | 2.57e-178 | 498 |
MS.gene022721.t1 | AT1G26320 | 71.221 | 344 | 94 | 3 | 4 | 343 | 9 | 351 | 3.32e-178 | 498 |
MS.gene022721.t1 | AT5G17000 | 70.760 | 342 | 95 | 3 | 6 | 343 | 5 | 345 | 1.16e-177 | 496 |
MS.gene022721.t1 | AT5G16990 | 69.795 | 341 | 99 | 4 | 6 | 343 | 4 | 343 | 2.74e-174 | 488 |
MS.gene022721.t1 | AT1G26320 | 70.058 | 344 | 93 | 4 | 4 | 343 | 9 | 346 | 1.13e-173 | 486 |
MS.gene022721.t1 | AT5G37980 | 66.472 | 343 | 109 | 3 | 6 | 343 | 12 | 353 | 9.35e-170 | 476 |
MS.gene022721.t1 | AT5G37940 | 65.889 | 343 | 111 | 3 | 6 | 343 | 12 | 353 | 1.96e-168 | 473 |
MS.gene022721.t1 | AT5G16960 | 66.377 | 345 | 111 | 3 | 1 | 341 | 1 | 344 | 3.77e-167 | 469 |
MS.gene022721.t1 | AT5G16960 | 66.377 | 345 | 111 | 3 | 1 | 341 | 1 | 344 | 3.77e-167 | 469 |
MS.gene022721.t1 | AT5G38000 | 64.516 | 341 | 115 | 3 | 6 | 341 | 12 | 351 | 3.34e-163 | 460 |
MS.gene022721.t1 | AT5G38000 | 63.798 | 337 | 113 | 4 | 6 | 334 | 12 | 347 | 1.04e-157 | 446 |
MS.gene022721.t1 | AT3G59845 | 64.348 | 345 | 113 | 6 | 4 | 341 | 5 | 346 | 6.53e-155 | 438 |
MS.gene022721.t1 | AT5G38000 | 60.704 | 341 | 109 | 4 | 6 | 341 | 12 | 332 | 1.72e-147 | 419 |
MS.gene022721.t1 | AT1G65560 | 58.841 | 345 | 136 | 5 | 4 | 343 | 7 | 350 | 1.84e-135 | 389 |
MS.gene022721.t1 | AT5G16980 | 58.309 | 343 | 105 | 4 | 1 | 343 | 1 | 305 | 2.71e-134 | 385 |
MS.gene022721.t1 | AT5G16980 | 76.106 | 226 | 54 | 0 | 118 | 343 | 14 | 239 | 8.77e-125 | 358 |
MS.gene022721.t1 | AT5G16980 | 76.106 | 226 | 54 | 0 | 118 | 343 | 14 | 239 | 8.77e-125 | 358 |
MS.gene022721.t1 | AT3G59845 | 71.020 | 245 | 69 | 2 | 98 | 341 | 1 | 244 | 1.60e-121 | 350 |
MS.gene022721.t1 | AT1G65560 | 61.255 | 271 | 101 | 3 | 77 | 343 | 4 | 274 | 2.87e-113 | 330 |
MS.gene022721.t1 | AT5G17000 | 69.725 | 218 | 61 | 3 | 6 | 219 | 5 | 221 | 1.04e-106 | 312 |
MS.gene022721.t1 | AT1G49670 | 35.407 | 209 | 127 | 5 | 138 | 340 | 412 | 618 | 8.28e-26 | 108 |
MS.gene022721.t1 | AT1G49670 | 35.468 | 203 | 123 | 5 | 144 | 340 | 441 | 641 | 1.42e-24 | 105 |
MS.gene022721.t1 | AT5G37960 | 54.667 | 75 | 34 | 0 | 264 | 338 | 27 | 101 | 1.43e-18 | 80.5 |
Find 84 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTCTTCTTTGTAGTTAA+AGG | 0.159741 | 8.3:+78980584 | None:intergenic |
AACCATGCAATTTGGCAAAT+TGG | 0.212138 | 8.3:+78980960 | None:intergenic |
TAGTTTGGGGAATGACTAAA+TGG | 0.237323 | 8.3:-78981281 | MS.gene022721:CDS |
TCATCTTTATACAAAATTCT+TGG | 0.259580 | 8.3:-78980028 | MS.gene022721:CDS |
ACCTGAAGGTGTCACAAATT+TGG | 0.261566 | 8.3:-78980106 | MS.gene022721:CDS |
AAAACTGTCTCTCCTTTCTT+AGG | 0.278383 | 8.3:+78981022 | None:intergenic |
AAGTAAATGTCGATGCCTTC+TGG | 0.282317 | 8.3:+78980231 | None:intergenic |
AAATCATCTTTCTTATAATC+TGG | 0.299191 | 8.3:+78981303 | None:intergenic |
TAAGAAAGATGATTTAGTTT+GGG | 0.308474 | 8.3:-78981295 | MS.gene022721:CDS |
GCCAAATTTGTGACACCTTC+AGG | 0.309515 | 8.3:+78980105 | None:intergenic |
ATAAGAAAGATGATTTAGTT+TGG | 0.311139 | 8.3:-78981296 | MS.gene022721:CDS |
AACATAGCAACCATGCAATT+TGG | 0.315125 | 8.3:+78980952 | None:intergenic |
TTGAAAAGTATTTCAGTTGC+AGG | 0.321684 | 8.3:+78981240 | None:intergenic |
TGAGAATGGCCCTGCAGCTT+TGG | 0.335929 | 8.3:-78979941 | MS.gene022721:CDS |
GGTGCTGTTGGTCAACTTGT+TGG | 0.364308 | 8.3:-78980983 | MS.gene022721:CDS |
TGCTATGTTGTTGGAAGTGC+TGG | 0.374726 | 8.3:-78980938 | MS.gene022721:CDS |
CCAGCATAAGCGGTCATTCC+CGG | 0.378844 | 8.3:+78981064 | None:intergenic |
CAATAGTGTCCTTGGCCATC+AGG | 0.381937 | 8.3:+78982402 | None:intergenic |
TTGCAGCCATTGACAGGATT+AGG | 0.387244 | 8.3:-78981354 | MS.gene022721:intron |
GTCCCGCTTTCCTACTATAC+TGG | 0.392986 | 8.3:-78981201 | MS.gene022721:CDS |
TTTGAGCAGAACCACATCAT+TGG | 0.403230 | 8.3:+78982460 | None:intergenic |
GTGTCTAAAGTTGTAGAATC+TGG | 0.408050 | 8.3:-78981330 | MS.gene022721:CDS |
TCCTACTATACTGGAATTCT+CGG | 0.415079 | 8.3:-78981192 | MS.gene022721:intron |
GCTTTGGTTGGTCTGTTTAG+TGG | 0.421611 | 8.3:-78979925 | MS.gene022721:CDS |
GGACTTGGTGGTCTCACCCC+TGG | 0.422269 | 8.3:-78982377 | MS.gene022721:CDS |
ATATCATATATAAGCGGATT+CGG | 0.434543 | 8.3:-78980080 | MS.gene022721:CDS |
ATGGCCAAGGACACTATTGC+AGG | 0.448653 | 8.3:-78982398 | MS.gene022721:CDS |
ACGTTCATGTCTGATTCTAT+AGG | 0.452868 | 8.3:+78982521 | None:intergenic |
GAGTAATTGCAGCCATTGAC+AGG | 0.454761 | 8.3:-78981360 | MS.gene022721:intron |
AGAAGGAAAGGTTGTGTATG+TGG | 0.461025 | 8.3:-78979983 | MS.gene022721:CDS |
AATGGCCCTGCAGCTTTGGT+TGG | 0.462636 | 8.3:-78979937 | MS.gene022721:CDS |
TCATCTGCCTCTGGTGCTGT+TGG | 0.469392 | 8.3:-78980995 | MS.gene022721:CDS |
TAAATGGGAAGAGTATAGTT+TGG | 0.470092 | 8.3:-78981265 | MS.gene022721:CDS |
TATGCTGGTTTCTTTGAAGT+AGG | 0.475286 | 8.3:-78981049 | MS.gene022721:CDS |
ACCTCGATGCAGCTTTGAAA+AGG | 0.476543 | 8.3:-78980560 | MS.gene022721:intron |
TTGCATGGTTGCTATGTTGT+TGG | 0.478375 | 8.3:-78980947 | MS.gene022721:CDS |
TTGTTTGAGTACAGGTATGC+CGG | 0.481096 | 8.3:-78981083 | MS.gene022721:intron |
GACACTATTGCAGGACTTGG+TGG | 0.484411 | 8.3:-78982389 | MS.gene022721:CDS |
AACAGACCAACCAAAGCTGC+AGG | 0.494837 | 8.3:+78979931 | None:intergenic |
ACCGAGAATTCCAGTATAGT+AGG | 0.503877 | 8.3:+78981191 | None:intergenic |
CCGGGAATGACCGCTTATGC+TGG | 0.510001 | 8.3:-78981064 | MS.gene022721:CDS |
AAGTCCTGCAATAGTGTCCT+TGG | 0.515317 | 8.3:+78982394 | None:intergenic |
AAGAAAGATGATTTAGTTTG+GGG | 0.523463 | 8.3:-78981294 | MS.gene022721:CDS |
GTCTCTTATAAGAGAAGGAA+AGG | 0.527141 | 8.3:-78979995 | MS.gene022721:CDS |
CTGTTTAGTGGTCAAAATGT+TGG | 0.532048 | 8.3:-78979913 | MS.gene022721:CDS |
ATAGCTGAGGGTCTTGAGAA+TGG | 0.533886 | 8.3:-78979955 | MS.gene022721:CDS |
GCCATCAGGATTCTCAGATA+AGG | 0.534182 | 8.3:+78982416 | None:intergenic |
CTCTTGAATATGAAACTCCA+TGG | 0.534749 | 8.3:-78980174 | MS.gene022721:CDS |
GAAGTAGGCTCTCCTAAGAA+AGG | 0.539150 | 8.3:-78981034 | MS.gene022721:CDS |
TGAAAAGTATTTCAGTTGCA+GGG | 0.540772 | 8.3:+78981241 | None:intergenic |
GACATTTACTTTGAGAACGT+TGG | 0.545762 | 8.3:-78980219 | MS.gene022721:CDS |
TTCCAGTATAGTAGGAAAGC+GGG | 0.546840 | 8.3:+78981199 | None:intergenic |
GACACTCCTAATCCTGTCAA+TGG | 0.548059 | 8.3:+78981348 | None:intergenic |
GTATTGTCTCTTATAAGAGA+AGG | 0.553750 | 8.3:-78980000 | MS.gene022721:CDS |
AGTTTGGGGAATGACTAAAT+GGG | 0.554508 | 8.3:-78981280 | MS.gene022721:CDS |
CACACACAGGTATGCGCCCA+TGG | 0.561199 | 8.3:+78980157 | None:intergenic |
ATTTACTTTGAGAACGTTGG+AGG | 0.562529 | 8.3:-78980216 | MS.gene022721:CDS |
TTCAAAGAAACCAGCATAAG+CGG | 0.566265 | 8.3:+78981054 | None:intergenic |
TGTTTGAGTACAGGTATGCC+GGG | 0.570748 | 8.3:-78981082 | MS.gene022721:intron |
GGCCAATTTGCCAAATTGCA+TGG | 0.571871 | 8.3:-78980962 | MS.gene022721:CDS |
TCTGAGAATCCTGATGGCCA+AGG | 0.573459 | 8.3:-78982411 | MS.gene022721:CDS |
CATATATAAGCGGATTCGGA+TGG | 0.577990 | 8.3:-78980076 | MS.gene022721:CDS |
TCCACAAGGTTCCAATGATG+TGG | 0.578841 | 8.3:-78982471 | MS.gene022721:CDS |
AAGGACACTATTGCAGGACT+TGG | 0.579832 | 8.3:-78982392 | MS.gene022721:CDS |
GATTCTCAGATAAGGATCAC+AGG | 0.585432 | 8.3:+78982424 | None:intergenic |
TATAAGCGGATTCGGATGGA+AGG | 0.599880 | 8.3:-78980072 | MS.gene022721:CDS |
ATAGCATGACATACAGAACC+AGG | 0.609222 | 8.3:+78982359 | None:intergenic |
AAGTGCTGGAAGTAAAGAGA+AGG | 0.616160 | 8.3:-78980924 | MS.gene022721:intron |
TCCTTATCTGAGAATCCTGA+TGG | 0.619794 | 8.3:-78982417 | MS.gene022721:CDS |
TAAACTAGATACTTTCCAGA+AGG | 0.622571 | 8.3:-78980246 | MS.gene022721:intron |
ACCACATCATTGGAACCTTG+TGG | 0.628337 | 8.3:+78982470 | None:intergenic |
TCTTGAATATGAAACTCCAT+GGG | 0.636007 | 8.3:-78980173 | MS.gene022721:CDS |
AAGTTGACCAACAGCACCAG+AGG | 0.637825 | 8.3:+78980988 | None:intergenic |
ATTCCAGTATAGTAGGAAAG+CGG | 0.640802 | 8.3:+78981198 | None:intergenic |
TGGCACATATCATATATAAG+CGG | 0.642495 | 8.3:-78980086 | MS.gene022721:CDS |
ATTACTCTCAAGCTTCCACA+AGG | 0.648436 | 8.3:-78982485 | MS.gene022721:CDS |
TACAATCTTACTCAACCTGA+AGG | 0.650544 | 8.3:-78980120 | MS.gene022721:CDS |
ACAGACCAACCAAAGCTGCA+GGG | 0.668442 | 8.3:+78979932 | None:intergenic |
CATGGGCGCATACCTGTGTG+TGG | 0.680594 | 8.3:-78980156 | MS.gene022721:CDS |
AGCATGACATACAGAACCAG+GGG | 0.683293 | 8.3:+78982361 | None:intergenic |
TGTGAGATCATTCCACACAC+AGG | 0.692179 | 8.3:+78980144 | None:intergenic |
TAGCATGACATACAGAACCA+GGG | 0.696996 | 8.3:+78982360 | None:intergenic |
GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:-78979968 | MS.gene022721:CDS |
TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:-78979967 | MS.gene022721:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATGTATAAAATTTACTT+TGG | - | chr8.3:78980258-78980277 | MS.gene022721:intron | 10.0% |
!! | TTATGTATAAAATTTACTTT+GGG | - | chr8.3:78980259-78980278 | MS.gene022721:intron | 10.0% |
!! | AATTGAATTTAACATTTCAA+AGG | - | chr8.3:78980212-78980231 | MS.gene022721:CDS | 15.0% |
!! | TATTCATTTAGTATAATTAC+AGG | + | chr8.3:78981799-78981818 | None:intergenic | 15.0% |
!!! | ATACTTTGTCTTTTAAAATT+AGG | + | chr8.3:78980238-78980257 | None:intergenic | 15.0% |
!!! | GATTTGTTGAAAAATAAATT+TGG | - | chr8.3:78981839-78981858 | MS.gene022721:intron | 15.0% |
!!! | TTTTTTTTTGTTTGTAAACT+TGG | + | chr8.3:78980530-78980549 | None:intergenic | 15.0% |
!! | AAAGTTAGTTATAATGTGTA+TGG | + | chr8.3:78980972-78980991 | None:intergenic | 20.0% |
!! | AAATCATCTTTCTTATAATC+TGG | + | chr8.3:78981157-78981176 | None:intergenic | 20.0% |
!! | AAGTAACTATAATGAAGTTA+TGG | - | chr8.3:78981020-78981039 | MS.gene022721:CDS | 20.0% |
!! | AATATCAAGGCTATAAATAA+TGG | - | chr8.3:78980819-78980838 | MS.gene022721:intron | 20.0% |
!! | ACATTTGATTAATCATTCTA+CGG | - | chr8.3:78981628-78981647 | MS.gene022721:intron | 20.0% |
!! | ATAAGAAAGATGATTTAGTT+TGG | - | chr8.3:78981161-78981180 | MS.gene022721:intron | 20.0% |
!! | ATTATTATTTGTGTGTATGT+AGG | - | chr8.3:78982111-78982130 | MS.gene022721:intron | 20.0% |
!! | CATACACACAAATAATAATT+TGG | + | chr8.3:78982110-78982129 | None:intergenic | 20.0% |
!! | CATTATAGTTACTTAGTTTA+TGG | + | chr8.3:78981014-78981033 | None:intergenic | 20.0% |
!! | TCATCTTTATACAAAATTCT+TGG | - | chr8.3:78982429-78982448 | MS.gene022721:CDS | 20.0% |
!! | TTAGTATAATTACAGGATAA+TGG | + | chr8.3:78981792-78981811 | None:intergenic | 20.0% |
!!! | CTATTTTAAATTTTGGAAAC+CGG | - | chr8.3:78981753-78981772 | MS.gene022721:intron | 20.0% |
!!! | TAAGAAAGATGATTTAGTTT+GGG | - | chr8.3:78981162-78981181 | MS.gene022721:intron | 20.0% |
! | AGTTGCATTAGATAATATAG+AGG | - | chr8.3:78980730-78980749 | MS.gene022721:intron | 25.0% |
! | ATCATAATCTTTACCTACTT+GGG | + | chr8.3:78980705-78980724 | None:intergenic | 25.0% |
! | ATTATTTAATGACCCAAGAA+AGG | - | chr8.3:78980661-78980680 | MS.gene022721:intron | 25.0% |
! | CTTCATAGATAGTTATTACT+TGG | - | chr8.3:78982147-78982166 | MS.gene022721:intron | 25.0% |
! | TAATGGTTGTAATTATGTAC+CGG | + | chr8.3:78981775-78981794 | None:intergenic | 25.0% |
! | TGTAATCTGTTTAGAGAAAA+TGG | + | chr8.3:78980576-78980595 | None:intergenic | 25.0% |
! | TGTTAATTCATCATTTATGC+AGG | + | chr8.3:78981605-78981624 | None:intergenic | 25.0% |
! | TTTCTCTTCTTTGTAGTTAA+AGG | + | chr8.3:78981876-78981895 | None:intergenic | 25.0% |
!! | AAGGAGAAATTACTCTAAAA+AGG | + | chr8.3:78980923-78980942 | None:intergenic | 25.0% |
!! | ATATCATATATAAGCGGATT+CGG | - | chr8.3:78982377-78982396 | MS.gene022721:CDS | 25.0% |
!!! | AAGAAAGATGATTTAGTTTG+GGG | - | chr8.3:78981163-78981182 | MS.gene022721:intron | 25.0% |
!!! | TTGTTGTTGCTTTTGAAATT+AGG | - | chr8.3:78980172-78980191 | MS.gene022721:CDS | 25.0% |
CATCATAATCTTTACCTACT+TGG | + | chr8.3:78980706-78980725 | None:intergenic | 30.0% | |
GAATATAATTATGACACACC+AGG | - | chr8.3:78981814-78981833 | MS.gene022721:intron | 30.0% | |
GCAATAATGTTTGATTAGTG+TGG | + | chr8.3:78980319-78980338 | None:intergenic | 30.0% | |
GCATCAACACTTTATATTCA+AGG | - | chr8.3:78981991-78982010 | MS.gene022721:intron | 30.0% | |
GTATTGTCTCTTATAAGAGA+AGG | - | chr8.3:78982457-78982476 | MS.gene022721:CDS | 30.0% | |
GTGAAGTTGTTAGAATATCA+AGG | - | chr8.3:78980806-78980825 | MS.gene022721:intron | 30.0% | |
TAAACTAGATACTTTCCAGA+AGG | - | chr8.3:78982211-78982230 | MS.gene022721:intron | 30.0% | |
TATTATCTTGAGCCTTTCTT+GGG | + | chr8.3:78980676-78980695 | None:intergenic | 30.0% | |
TCTTGAATATGAAACTCCAT+GGG | - | chr8.3:78982284-78982303 | MS.gene022721:intron | 30.0% | |
TGGCACATATCATATATAAG+CGG | - | chr8.3:78982371-78982390 | MS.gene022721:intron | 30.0% | |
TTGTTTGTAAACTTGGTATC+CGG | + | chr8.3:78980523-78980542 | None:intergenic | 30.0% | |
! | CATTCATGAATAGTTTGTCT+TGG | - | chr8.3:78980137-78980156 | MS.gene022721:CDS | 30.0% |
! | TAAATGGGAAGAGTATAGTT+TGG | - | chr8.3:78981192-78981211 | MS.gene022721:intron | 30.0% |
!! | GAATATAAAGTGTTGATGCT+AGG | + | chr8.3:78981990-78982009 | None:intergenic | 30.0% |
!! | TAGTTTGTCTTGGATTTTGA+AGG | - | chr8.3:78980147-78980166 | MS.gene022721:CDS | 30.0% |
!! | TATTTTTCAACAAATCCACC+TGG | + | chr8.3:78981835-78981854 | None:intergenic | 30.0% |
!! | TGAAAAGTATTTCAGTTGCA+GGG | + | chr8.3:78981219-78981238 | None:intergenic | 30.0% |
!! | TTGAAAAGTATTTCAGTTGC+AGG | + | chr8.3:78981220-78981239 | None:intergenic | 30.0% |
!! | TTGTGTTTTTGTTTGAGTAC+AGG | - | chr8.3:78981366-78981385 | MS.gene022721:intron | 30.0% |
!!! | GTCTGTTTCTAACAGTTTTA+TGG | - | chr8.3:78981919-78981938 | MS.gene022721:intron | 30.0% |
!!! | TGCTTTTGAAATTAGGAAGT+GGG | - | chr8.3:78980179-78980198 | MS.gene022721:CDS | 30.0% |
!!! | TTGCTTTTGAAATTAGGAAG+TGG | - | chr8.3:78980178-78980197 | MS.gene022721:CDS | 30.0% |
AAAACTGTCTCTCCTTTCTT+AGG | + | chr8.3:78981438-78981457 | None:intergenic | 35.0% | |
AACATAGCAACCATGCAATT+TGG | + | chr8.3:78981508-78981527 | None:intergenic | 35.0% | |
AACATTATTGCTAACCCACT+TGG | - | chr8.3:78980328-78980347 | MS.gene022721:intron | 35.0% | |
AACCATGCAATTTGGCAAAT+TGG | + | chr8.3:78981500-78981519 | None:intergenic | 35.0% | |
ACATTATTGCTAACCCACTT+GGG | - | chr8.3:78980329-78980348 | MS.gene022721:intron | 35.0% | |
ACGTTCATGTCTGATTCTAT+AGG | + | chr8.3:78979939-78979958 | None:intergenic | 35.0% | |
AGTAATTTCTCCTTCCTTGT+AGG | - | chr8.3:78980929-78980948 | MS.gene022721:CDS | 35.0% | |
AGTTTGGGGAATGACTAAAT+GGG | - | chr8.3:78981177-78981196 | MS.gene022721:intron | 35.0% | |
ATTCCAGTATAGTAGGAAAG+CGG | + | chr8.3:78981262-78981281 | None:intergenic | 35.0% | |
CTATTATCTTGAGCCTTTCT+TGG | + | chr8.3:78980677-78980696 | None:intergenic | 35.0% | |
CTCTTGAATATGAAACTCCA+TGG | - | chr8.3:78982283-78982302 | MS.gene022721:intron | 35.0% | |
CTGTTTAGTGGTCAAAATGT+TGG | - | chr8.3:78982544-78982563 | MS.gene022721:CDS | 35.0% | |
GATAATAGAATAGCCCAAGT+AGG | - | chr8.3:78980689-78980708 | MS.gene022721:intron | 35.0% | |
GTCTCTTATAAGAGAAGGAA+AGG | - | chr8.3:78982462-78982481 | MS.gene022721:CDS | 35.0% | |
GTTAAGAGAAGCAAACTCTA+AGG | + | chr8.3:78980379-78980398 | None:intergenic | 35.0% | |
GTTGGACTCTTTAGATTAGT+TGG | - | chr8.3:78980490-78980509 | MS.gene022721:intron | 35.0% | |
TACAATCTTACTCAACCTGA+AGG | - | chr8.3:78982337-78982356 | MS.gene022721:intron | 35.0% | |
TAGTTTGGGGAATGACTAAA+TGG | - | chr8.3:78981176-78981195 | MS.gene022721:intron | 35.0% | |
TATAATTATGACACACCAGG+TGG | - | chr8.3:78981817-78981836 | MS.gene022721:intron | 35.0% | |
TCCTACTATACTGGAATTCT+CGG | - | chr8.3:78981265-78981284 | MS.gene022721:CDS | 35.0% | |
TGTCATGAATCACAACGAAA+TGG | + | chr8.3:78981342-78981361 | None:intergenic | 35.0% | |
TTCAAAGAAACCAGCATAAG+CGG | + | chr8.3:78981406-78981425 | None:intergenic | 35.0% | |
! | ATTTACTTTGAGAACGTTGG+AGG | - | chr8.3:78982241-78982260 | MS.gene022721:intron | 35.0% |
! | GACATTTACTTTGAGAACGT+TGG | - | chr8.3:78982238-78982257 | MS.gene022721:intron | 35.0% |
! | GGATAGTGGTTATTGTAGTT+AGG | + | chr8.3:78981680-78981699 | None:intergenic | 35.0% |
! | GTGTCTAAAGTTGTAGAATC+TGG | - | chr8.3:78981127-78981146 | MS.gene022721:intron | 35.0% |
!! | ATGGTTACAGTTTGTTGACT+GGG | - | chr8.3:78981039-78981058 | MS.gene022721:CDS | 35.0% |
!! | ATTTTGAGAGACTATGTGTC+TGG | - | chr8.3:78979909-78979928 | MS.gene022721:CDS | 35.0% |
!! | CTAGATCCTTCTAAAACATG+AGG | + | chr8.3:78980761-78980780 | None:intergenic | 35.0% |
!! | TAGATTAGTTGGTCTTAAGC+CGG | - | chr8.3:78980501-78980520 | MS.gene022721:intron | 35.0% |
!! | TATGCTGGTTTCTTTGAAGT+AGG | - | chr8.3:78981408-78981427 | MS.gene022721:intron | 35.0% |
!! | TATGGTTACAGTTTGTTGAC+TGG | - | chr8.3:78981038-78981057 | MS.gene022721:CDS | 35.0% |
!!! | GCTTTTGAAATTAGGAAGTG+GGG | - | chr8.3:78980180-78980199 | MS.gene022721:CDS | 35.0% |
AAGTAAATGTCGATGCCTTC+TGG | + | chr8.3:78982229-78982248 | None:intergenic | 40.0% | |
ACCGAGAATTCCAGTATAGT+AGG | + | chr8.3:78981269-78981288 | None:intergenic | 40.0% | |
AGAAGGAAAGGTTGTGTATG+TGG | - | chr8.3:78982474-78982493 | MS.gene022721:CDS | 40.0% | |
ATAGCATGACATACAGAACC+AGG | + | chr8.3:78980101-78980120 | None:intergenic | 40.0% | |
ATTACTCTCAAGCTTCCACA+AGG | - | chr8.3:78979972-78979991 | MS.gene022721:CDS | 40.0% | |
CACATGTGACATTGTTGTGT+TGG | + | chr8.3:78982062-78982081 | None:intergenic | 40.0% | |
CACCTACGACTCATCATAAT+GGG | + | chr8.3:78980789-78980808 | None:intergenic | 40.0% | |
CTGCCGTTAAAGTGACATAT+TGG | + | chr8.3:78981065-78981084 | None:intergenic | 40.0% | |
GATTCTCAGATAAGGATCAC+AGG | + | chr8.3:78980036-78980055 | None:intergenic | 40.0% | |
TAGCATGACATACAGAACCA+GGG | + | chr8.3:78980100-78980119 | None:intergenic | 40.0% | |
TATGTGGAAGACATAGCTGA+GGG | - | chr8.3:78982490-78982509 | MS.gene022721:CDS | 40.0% | |
TCAACAAGTGAGCAAAGACT+TGG | + | chr8.3:78981701-78981720 | None:intergenic | 40.0% | |
TCACCTACGACTCATCATAA+TGG | + | chr8.3:78980790-78980809 | None:intergenic | 40.0% | |
TCCTTATCTGAGAATCCTGA+TGG | - | chr8.3:78980040-78980059 | MS.gene022721:CDS | 40.0% | |
TCTTAACGTTTCGATTCCCT+CGG | - | chr8.3:78980392-78980411 | MS.gene022721:intron | 40.0% | |
TTCCAGTATAGTAGGAAAGC+GGG | + | chr8.3:78981261-78981280 | None:intergenic | 40.0% | |
TTGCATGGTTGCTATGTTGT+TGG | - | chr8.3:78981510-78981529 | MS.gene022721:intron | 40.0% | |
TTGTTTGAGTACAGGTATGC+CGG | - | chr8.3:78981374-78981393 | MS.gene022721:intron | 40.0% | |
TTTGAGCAGAACCACATCAT+TGG | + | chr8.3:78980000-78980019 | None:intergenic | 40.0% | |
! | AAGTCTTTGCTCACTTGTTG+AGG | - | chr8.3:78981700-78981719 | MS.gene022721:intron | 40.0% |
! | CATATATAAGCGGATTCGGA+TGG | - | chr8.3:78982381-78982400 | MS.gene022721:CDS | 40.0% |
!! | AAGTGCTGGAAGTAAAGAGA+AGG | - | chr8.3:78981533-78981552 | MS.gene022721:intron | 40.0% |
!! | ACCTGAAGGTGTCACAAATT+TGG | - | chr8.3:78982351-78982370 | MS.gene022721:intron | 40.0% |
!! | GGGCCAATATGTCACTTTAA+CGG | - | chr8.3:78981059-78981078 | MS.gene022721:CDS | 40.0% |
!! | GTGAGTCCTCATGTTTTAGA+AGG | - | chr8.3:78980752-78980771 | MS.gene022721:intron | 40.0% |
!! | GTGTATGGTACCACTTTTGA+TGG | + | chr8.3:78980957-78980976 | None:intergenic | 40.0% |
!! | GTTTTTGTTTCATCTGCCTC+TGG | - | chr8.3:78981453-78981472 | MS.gene022721:intron | 40.0% |
AAGGACACTATTGCAGGACT+TGG | - | chr8.3:78980065-78980084 | MS.gene022721:CDS | 45.0% | |
AAGTCCTGCAATAGTGTCCT+TGG | + | chr8.3:78980066-78980085 | None:intergenic | 45.0% | |
ACCACATCATTGGAACCTTG+TGG | + | chr8.3:78979990-78980009 | None:intergenic | 45.0% | |
AGCATGACATACAGAACCAG+GGG | + | chr8.3:78980099-78980118 | None:intergenic | 45.0% | |
AGCCAGAGCAAGACTATGTA+TGG | + | chr8.3:78980439-78980458 | None:intergenic | 45.0% | |
ATAGCTGAGGGTCTTGAGAA+TGG | - | chr8.3:78982502-78982521 | MS.gene022721:CDS | 45.0% | |
CACCCATTATGATGAGTCGT+AGG | - | chr8.3:78980784-78980803 | MS.gene022721:intron | 45.0% | |
GAAGTAGGCTCTCCTAAGAA+AGG | - | chr8.3:78981423-78981442 | MS.gene022721:intron | 45.0% | |
GACACTCCTAATCCTGTCAA+TGG | + | chr8.3:78981112-78981131 | None:intergenic | 45.0% | |
GAGTAATTGCAGCCATTGAC+AGG | - | chr8.3:78981097-78981116 | MS.gene022721:intron | 45.0% | |
GCCAAATTTGTGACACCTTC+AGG | + | chr8.3:78982355-78982374 | None:intergenic | 45.0% | |
GCCATCAGGATTCTCAGATA+AGG | + | chr8.3:78980044-78980063 | None:intergenic | 45.0% | |
GGCCAATTTGCCAAATTGCA+TGG | - | chr8.3:78981495-78981514 | MS.gene022721:intron | 45.0% | |
GTATGTGGAAGACATAGCTG+AGG | - | chr8.3:78982489-78982508 | MS.gene022721:CDS | 45.0% | |
GTGAGCAAAGACTTGGATAG+TGG | + | chr8.3:78981694-78981713 | None:intergenic | 45.0% | |
TATTGCTAACCCACTTGGGT+TGG | - | chr8.3:78980333-78980352 | MS.gene022721:intron | 45.0% | |
TCCACAAGGTTCCAATGATG+TGG | - | chr8.3:78979986-78980005 | MS.gene022721:CDS | 45.0% | |
TGTCAGACACTAACACGTGT+CGG | + | chr8.3:78982039-78982058 | None:intergenic | 45.0% | |
TGTGAGATCATTCCACACAC+AGG | + | chr8.3:78982316-78982335 | None:intergenic | 45.0% | |
TGTTTGAGTACAGGTATGCC+GGG | - | chr8.3:78981375-78981394 | MS.gene022721:intron | 45.0% | |
TTGCAGCCATTGACAGGATT+AGG | - | chr8.3:78981103-78981122 | MS.gene022721:intron | 45.0% | |
! | AAGGTGTTTCCAACACGTGT+TGG | - | chr8.3:78982010-78982029 | MS.gene022721:intron | 45.0% |
! | ACCTTTTCAAAGCTGCATCG+AGG | + | chr8.3:78981901-78981920 | None:intergenic | 45.0% |
! | CTTGTAGGTGCCATCAAAAG+TGG | - | chr8.3:78980944-78980963 | MS.gene022721:CDS | 45.0% |
! | GTCCATACATAGTCTTGCTC+TGG | - | chr8.3:78980434-78980453 | MS.gene022721:intron | 45.0% |
! | TATAAGCGGATTCGGATGGA+AGG | - | chr8.3:78982385-78982404 | MS.gene022721:CDS | 45.0% |
! | TGCTATGTTGTTGGAAGTGC+TGG | - | chr8.3:78981519-78981538 | MS.gene022721:intron | 45.0% |
! | TTTGATGGCACCTACAAGGA+AGG | + | chr8.3:78980942-78980961 | None:intergenic | 45.0% |
!! | ACCTCGATGCAGCTTTGAAA+AGG | - | chr8.3:78981897-78981916 | MS.gene022721:intron | 45.0% |
!! | CACTTTTGATGGCACCTACA+AGG | + | chr8.3:78980946-78980965 | None:intergenic | 45.0% |
!! | GCTTTGGTTGGTCTGTTTAG+TGG | - | chr8.3:78982532-78982551 | MS.gene022721:CDS | 45.0% |
!!! | GATTCCCTCGGTGTCAATTT+TGG | - | chr8.3:78980404-78980423 | MS.gene022721:intron | 45.0% |
!!! | AAAAATACTATTTTAAATTT+TGG | - | chr8.3:78981746-78981765 | MS.gene022721:intron | 5.0% |
AACAGACCAACCAAAGCTGC+AGG | + | chr8.3:78982529-78982548 | None:intergenic | 50.0% | |
AAGTTGACCAACAGCACCAG+AGG | + | chr8.3:78981472-78981491 | None:intergenic | 50.0% | |
ACAGACCAACCAAAGCTGCA+GGG | + | chr8.3:78982528-78982547 | None:intergenic | 50.0% | |
ATGGCCAAGGACACTATTGC+AGG | - | chr8.3:78980059-78980078 | MS.gene022721:CDS | 50.0% | |
CAATAGTGTCCTTGGCCATC+AGG | + | chr8.3:78980058-78980077 | None:intergenic | 50.0% | |
CCCACCAAAATTGACACCGA+GGG | + | chr8.3:78980411-78980430 | None:intergenic | 50.0% | |
GACACTATTGCAGGACTTGG+TGG | - | chr8.3:78980068-78980087 | MS.gene022721:CDS | 50.0% | |
GTCCCGCTTTCCTACTATAC+TGG | - | chr8.3:78981256-78981275 | MS.gene022721:CDS | 50.0% | |
TCTGAGAATCCTGATGGCCA+AGG | - | chr8.3:78980046-78980065 | MS.gene022721:CDS | 50.0% | |
!! | GGTGCTGTTGGTCAACTTGT+TGG | - | chr8.3:78981474-78981493 | MS.gene022721:intron | 50.0% |
!! | TTGGCATGTGGTGTTGGTTC+AGG | - | chr8.3:78980352-78980371 | MS.gene022721:intron | 50.0% |
!!! | CCCTCGGTGTCAATTTTGGT+GGG | - | chr8.3:78980408-78980427 | MS.gene022721:intron | 50.0% |
!!! | TCCCTCGGTGTCAATTTTGG+TGG | - | chr8.3:78980407-78980426 | MS.gene022721:intron | 50.0% |
AACCCCATCGTCCACTTGCA+GGG | + | chr8.3:78980473-78980492 | None:intergenic | 55.0% | |
ACACCACATGCCAACCCAAG+TGG | + | chr8.3:78980346-78980365 | None:intergenic | 55.0% | |
CACCACATGCCAACCCAAGT+GGG | + | chr8.3:78980345-78980364 | None:intergenic | 55.0% | |
CCAGCATAAGCGGTCATTCC+CGG | + | chr8.3:78981396-78981415 | None:intergenic | 55.0% | |
GCCCACCAAAATTGACACCG+AGG | + | chr8.3:78980412-78980431 | None:intergenic | 55.0% | |
TGAGAATGGCCCTGCAGCTT+TGG | - | chr8.3:78982516-78982535 | MS.gene022721:CDS | 55.0% | |
TGTCGGACACCAACACGTGT+TGG | + | chr8.3:78982022-78982041 | None:intergenic | 55.0% | |
TTAAACGAGCCCCCTGCAAG+TGG | - | chr8.3:78980459-78980478 | MS.gene022721:intron | 55.0% | |
! | AATGGCCCTGCAGCTTTGGT+TGG | - | chr8.3:78982520-78982539 | MS.gene022721:CDS | 55.0% |
!! | AACCCACTTGGGTTGGCATG+TGG | - | chr8.3:78980340-78980359 | MS.gene022721:intron | 55.0% |
!! | CTTGGGTTGGCATGTGGTGT+TGG | - | chr8.3:78980346-78980365 | MS.gene022721:intron | 55.0% |
!! | TCATCTGCCTCTGGTGCTGT+TGG | - | chr8.3:78981462-78981481 | MS.gene022721:intron | 55.0% |
ACCCCATCGTCCACTTGCAG+GGG | + | chr8.3:78980472-78980491 | None:intergenic | 60.0% | |
CAACCCCATCGTCCACTTGC+AGG | + | chr8.3:78980474-78980493 | None:intergenic | 60.0% | |
CACACACAGGTATGCGCCCA+TGG | + | chr8.3:78982303-78982322 | None:intergenic | 60.0% | |
CATGGGCGCATACCTGTGTG+TGG | - | chr8.3:78982301-78982320 | MS.gene022721:intron | 60.0% | |
CCGGGAATGACCGCTTATGC+TGG | - | chr8.3:78981393-78981412 | MS.gene022721:intron | 60.0% | |
CTGCAAGTGGACGATGGGGT+TGG | - | chr8.3:78980472-78980491 | MS.gene022721:intron | 60.0% | |
AGCCCCCTGCAAGTGGACGA+TGG | - | chr8.3:78980466-78980485 | MS.gene022721:intron | 65.0% | |
CCCCATCGTCCACTTGCAGG+GGG | + | chr8.3:78980471-78980490 | None:intergenic | 65.0% | |
CCCCCTGCAAGTGGACGATG+GGG | - | chr8.3:78980468-78980487 | MS.gene022721:intron | 65.0% | |
GCCCCCTGCAAGTGGACGAT+GGG | - | chr8.3:78980467-78980486 | MS.gene022721:intron | 65.0% | |
!! | GGACTTGGTGGTCTCACCCC+TGG | - | chr8.3:78980080-78980099 | MS.gene022721:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 78979882 | 78982597 | 78979882 | ID=MS.gene022721 |
chr8.3 | mRNA | 78979882 | 78982597 | 78979882 | ID=MS.gene022721.t1;Parent=MS.gene022721 |
chr8.3 | exon | 78982373 | 78982597 | 78982373 | ID=MS.gene022721.t1.exon1;Parent=MS.gene022721.t1 |
chr8.3 | CDS | 78982373 | 78982597 | 78982373 | ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1 |
chr8.3 | exon | 78981193 | 78981370 | 78981193 | ID=MS.gene022721.t1.exon2;Parent=MS.gene022721.t1 |
chr8.3 | CDS | 78981193 | 78981370 | 78981193 | ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1 |
chr8.3 | exon | 78980925 | 78981091 | 78980925 | ID=MS.gene022721.t1.exon3;Parent=MS.gene022721.t1 |
chr8.3 | CDS | 78980925 | 78981091 | 78980925 | ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1 |
chr8.3 | exon | 78980561 | 78980643 | 78980561 | ID=MS.gene022721.t1.exon4;Parent=MS.gene022721.t1 |
chr8.3 | CDS | 78980561 | 78980643 | 78980561 | ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1 |
chr8.3 | exon | 78979882 | 78980260 | 78979882 | ID=MS.gene022721.t1.exon5;Parent=MS.gene022721.t1 |
chr8.3 | CDS | 78979882 | 78980260 | 78979882 | ID=cds.MS.gene022721.t1;Parent=MS.gene022721.t1 |
Gene Sequence |
Protein sequence |