Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020033.t1 | RHN38828.1 | 89.2 | 342 | 8 | 1 | 1 | 313 | 496 | 837 | 1.40E-169 | 605.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020033.t1 | Q39172 | 65.7 | 341 | 84 | 2 | 6 | 313 | 5 | 345 | 7.2e-127 | 454.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020033.t1 | A0A396GE40 | 89.2 | 342 | 8 | 1 | 1 | 313 | 496 | 837 | 9.9e-170 | 605.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020033 | MS.gene067859 | PPI |
| MS.gene08162 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene022721 | PPI |
| MS.gene020033 | MS.gene022736 | PPI |
| MS.gene020033 | MS.gene39312 | PPI |
| MS.gene020225 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene020228 | PPI |
| MS.gene020033 | MS.gene022737 | PPI |
| MS.gene022722 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene41778 | PPI |
| MS.gene020033 | MS.gene022735 | PPI |
| MS.gene020077 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene042467 | PPI |
| MS.gene020033 | MS.gene45375 | PPI |
| MS.gene020228 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene020226 | PPI |
| MS.gene39327 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene020227 | PPI |
| MS.gene020033 | MS.gene069341 | PPI |
| MS.gene39312 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene54433 | PPI |
| MS.gene020033 | MS.gene39314 | PPI |
| MS.gene020033 | MS.gene022722 | PPI |
| MS.gene020033 | MS.gene97874 | PPI |
| MS.gene020033 | MS.gene020076 | PPI |
| MS.gene39315 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene022738 | PPI |
| MS.gene54434 | MS.gene020033 | PPI |
| MS.gene020239 | MS.gene020033 | PPI |
| MS.gene020033 | MS.gene39326 | PPI |
| MS.gene020033 | MS.gene39313 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020033.t1 | MTR_8g009840 | 88.988 | 336 | 8 | 1 | 1 | 307 | 1 | 336 | 0.0 | 600 |
| MS.gene020033.t1 | MTR_8g009830 | 86.257 | 342 | 18 | 1 | 1 | 313 | 1 | 342 | 0.0 | 590 |
| MS.gene020033.t1 | MTR_8g009820 | 82.216 | 343 | 31 | 2 | 1 | 313 | 60 | 402 | 0.0 | 571 |
| MS.gene020033.t1 | MTR_8g010030 | 75.872 | 344 | 52 | 2 | 1 | 313 | 1 | 344 | 0.0 | 528 |
| MS.gene020033.t1 | MTR_8g010020 | 80.255 | 314 | 59 | 2 | 1 | 313 | 1 | 312 | 0.0 | 524 |
| MS.gene020033.t1 | MTR_8g009980 | 77.035 | 344 | 48 | 2 | 1 | 313 | 1 | 344 | 0.0 | 524 |
| MS.gene020033.t1 | MTR_8g010000 | 66.860 | 344 | 58 | 3 | 1 | 313 | 1 | 319 | 1.11e-161 | 453 |
| MS.gene020033.t1 | MTR_4g082970 | 61.988 | 342 | 99 | 2 | 3 | 313 | 9 | 350 | 4.15e-148 | 420 |
| MS.gene020033.t1 | MTR_7g406860 | 56.686 | 344 | 118 | 5 | 1 | 313 | 3 | 346 | 2.06e-132 | 380 |
| MS.gene020033.t1 | MTR_8g007325 | 78.899 | 218 | 16 | 2 | 1 | 188 | 1 | 218 | 1.90e-119 | 343 |
| MS.gene020033.t1 | MTR_0011s0280 | 43.478 | 345 | 161 | 2 | 3 | 313 | 2 | 346 | 7.26e-99 | 295 |
| MS.gene020033.t1 | MTR_2g088190 | 44.776 | 268 | 143 | 4 | 48 | 310 | 80 | 347 | 2.50e-71 | 224 |
| MS.gene020033.t1 | MTR_2g088220 | 45.528 | 246 | 129 | 4 | 48 | 288 | 81 | 326 | 2.46e-67 | 214 |
| MS.gene020033.t1 | MTR_2g088200 | 42.798 | 243 | 134 | 4 | 51 | 288 | 84 | 326 | 1.81e-62 | 202 |
| MS.gene020033.t1 | MTR_5g095030 | 58.594 | 128 | 53 | 0 | 184 | 311 | 9 | 136 | 1.81e-51 | 166 |
| MS.gene020033.t1 | MTR_4g086410 | 37.321 | 209 | 123 | 4 | 108 | 310 | 416 | 622 | 7.25e-28 | 114 |
| MS.gene020033.t1 | MTR_4g086400 | 36.842 | 209 | 124 | 5 | 108 | 310 | 276 | 482 | 9.92e-28 | 112 |
| MS.gene020033.t1 | MTR_4g086400 | 36.842 | 209 | 124 | 5 | 108 | 310 | 416 | 622 | 1.57e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020033.t1 | AT3G03080 | 67.151 | 344 | 81 | 3 | 2 | 313 | 7 | 350 | 3.22e-165 | 463 |
| MS.gene020033.t1 | AT5G16970 | 65.689 | 341 | 84 | 2 | 6 | 313 | 5 | 345 | 5.28e-163 | 457 |
| MS.gene020033.t1 | AT5G16990 | 65.588 | 340 | 85 | 3 | 6 | 313 | 4 | 343 | 3.03e-160 | 451 |
| MS.gene020033.t1 | AT5G17000 | 65.103 | 341 | 86 | 3 | 6 | 313 | 5 | 345 | 1.98e-159 | 449 |
| MS.gene020033.t1 | AT1G26320 | 65.015 | 343 | 87 | 3 | 4 | 313 | 9 | 351 | 3.37e-159 | 448 |
| MS.gene020033.t1 | AT5G37980 | 62.865 | 342 | 93 | 3 | 6 | 313 | 12 | 353 | 3.50e-155 | 438 |
| MS.gene020033.t1 | AT1G26320 | 63.848 | 343 | 86 | 4 | 4 | 313 | 9 | 346 | 1.03e-154 | 437 |
| MS.gene020033.t1 | AT5G37940 | 62.281 | 342 | 95 | 3 | 6 | 313 | 12 | 353 | 5.58e-154 | 435 |
| MS.gene020033.t1 | AT5G16960 | 62.209 | 344 | 97 | 3 | 1 | 311 | 1 | 344 | 1.89e-151 | 428 |
| MS.gene020033.t1 | AT5G16960 | 62.209 | 344 | 97 | 3 | 1 | 311 | 1 | 344 | 1.89e-151 | 428 |
| MS.gene020033.t1 | AT5G38000 | 60.882 | 340 | 99 | 3 | 6 | 311 | 12 | 351 | 8.30e-149 | 422 |
| MS.gene020033.t1 | AT5G38000 | 59.524 | 336 | 99 | 4 | 6 | 304 | 12 | 347 | 2.74e-142 | 405 |
| MS.gene020033.t1 | AT5G16980 | 61.538 | 325 | 93 | 3 | 1 | 313 | 1 | 305 | 1.23e-139 | 397 |
| MS.gene020033.t1 | AT3G59845 | 58.187 | 342 | 109 | 3 | 4 | 311 | 5 | 346 | 2.49e-138 | 395 |
| MS.gene020033.t1 | AT5G38000 | 57.059 | 340 | 93 | 4 | 6 | 311 | 12 | 332 | 3.85e-133 | 382 |
| MS.gene020033.t1 | AT5G16980 | 77.434 | 226 | 51 | 0 | 88 | 313 | 14 | 239 | 2.14e-129 | 369 |
| MS.gene020033.t1 | AT5G16980 | 77.434 | 226 | 51 | 0 | 88 | 313 | 14 | 239 | 2.14e-129 | 369 |
| MS.gene020033.t1 | AT1G65560 | 53.779 | 344 | 125 | 4 | 4 | 313 | 7 | 350 | 1.10e-122 | 355 |
| MS.gene020033.t1 | AT3G59845 | 68.443 | 244 | 76 | 1 | 69 | 311 | 1 | 244 | 2.15e-120 | 346 |
| MS.gene020033.t1 | AT1G65560 | 60.148 | 271 | 103 | 2 | 48 | 313 | 4 | 274 | 6.14e-115 | 333 |
| MS.gene020033.t1 | AT5G17000 | 61.751 | 217 | 50 | 3 | 6 | 189 | 5 | 221 | 1.38e-89 | 268 |
| MS.gene020033.t1 | AT1G49670 | 36.364 | 209 | 125 | 5 | 108 | 310 | 412 | 618 | 1.13e-26 | 110 |
| MS.gene020033.t1 | AT1G49670 | 36.453 | 203 | 121 | 5 | 114 | 310 | 441 | 641 | 2.63e-25 | 106 |
| MS.gene020033.t1 | AT5G37960 | 56.000 | 75 | 33 | 0 | 234 | 308 | 27 | 101 | 1.62e-20 | 85.5 |
Find 74 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTTGGAGTCTTACTAAA+TGG | 0.232605 | 8.3:+76531890 | MS.gene020033:CDS |
| TAAACATTCTCTCCTTTCTT+AGG | 0.243536 | 8.3:-76532153 | None:intergenic |
| TCCTATTATACTGGAATTCT+TGG | 0.259196 | 8.3:+76531976 | MS.gene020033:CDS |
| ACCTGAAGGTGTCACAAATT+TGG | 0.261566 | 8.3:+76533017 | MS.gene020033:CDS |
| ATGTTCATGTCTGATTCTTT+AGG | 0.265462 | 8.3:-76531503 | None:intergenic |
| GCCAAATTTGTGACACCTTC+AGG | 0.288617 | 8.3:-76533018 | None:intergenic |
| AAGTAAATGTCAATGCCTTC+TGG | 0.290715 | 8.3:-76532892 | None:intergenic |
| TCACCTTTATACAAAATTCT+TGG | 0.290796 | 8.3:+76533095 | MS.gene020033:CDS |
| AAATCATCTTTCTTATAATC+TGG | 0.299191 | 8.3:-76531868 | None:intergenic |
| GTCCCACTTTCCTATTATAC+TGG | 0.312861 | 8.3:+76531967 | MS.gene020033:CDS |
| TGTGAGATCATTCCACTTAC+AGG | 0.322522 | 8.3:-76532979 | None:intergenic |
| ATAAGAAAGATGATTTAGTT+TGG | 0.338960 | 8.3:+76531875 | MS.gene020033:CDS |
| ACATTTACTTTGAGAATGTT+GGG | 0.344583 | 8.3:+76532905 | MS.gene020033:CDS |
| TTGCAGCCACTGACAGGCTT+TGG | 0.351353 | 8.3:+76531817 | MS.gene020033:intron |
| GTTTATGTTTCTGCTGCATC+TGG | 0.358562 | 8.3:+76532171 | MS.gene020033:CDS |
| ACCAAGAATTCCAGTATAAT+AGG | 0.375084 | 8.3:-76531977 | None:intergenic |
| ACCTCAATGCAGCTTTAAAA+AGG | 0.376014 | 8.3:+76532591 | MS.gene020033:CDS |
| TATGCCGGTTTCTTTGAATT+AGG | 0.385175 | 8.3:+76532126 | MS.gene020033:CDS |
| TATAGTTTGGTTCCTACAAC+TGG | 0.385625 | 8.3:+76531919 | MS.gene020033:CDS |
| ACCTTTCCTTCTCTTATAAG+AGG | 0.391934 | 8.3:-76533129 | None:intergenic |
| GGTGCTGTTGGTCAACTTGT+AGG | 0.393880 | 8.3:+76532192 | MS.gene020033:CDS |
| TTTAAAGCTGCATTGAGGTC+TGG | 0.396923 | 8.3:-76532587 | None:intergenic |
| AATGGTCCTGCTGCATTGAT+TGG | 0.402266 | 8.3:+76533186 | MS.gene020033:CDS |
| GTATCTAAAGTTGTAGAATC+TGG | 0.408050 | 8.3:+76531841 | MS.gene020033:CDS |
| CCGGCATATGCAGTCATTCC+CGG | 0.416666 | 8.3:-76532111 | None:intergenic |
| TAAATGGGAAGAGTATAGTT+TGG | 0.417552 | 8.3:+76531906 | MS.gene020033:CDS |
| GACATTTACTTTGAGAATGT+TGG | 0.417924 | 8.3:+76532904 | MS.gene020033:CDS |
| AAATCATATATAAGCGGATT+CGG | 0.423759 | 8.3:+76533043 | MS.gene020033:CDS |
| TGTTATGTTGTTGGAAGTGC+TGG | 0.423888 | 8.3:+76532237 | MS.gene020033:CDS |
| GGACTTGGTGCTCTCACCCC+TGG | 0.424238 | 8.3:+76531652 | MS.gene020033:intron |
| TTGTGGAAGGTTGAGAGTTA+TGG | 0.428054 | 8.3:-76531537 | None:intergenic |
| CAACATTGCGACCACTGTAT+AGG | 0.431334 | 8.3:-76533209 | None:intergenic |
| CTGCATGGTTGTTATGTTGT+TGG | 0.438226 | 8.3:+76532228 | MS.gene020033:CDS |
| TTCCTTCTCTTATAAGAGGC+AGG | 0.439768 | 8.3:-76533125 | None:intergenic |
| ATTCTAAAGGACTATGTGTC+TGG | 0.456623 | 8.3:+76531476 | MS.gene020033:CDS |
| AGAAGGAAAGGTTGTGTATG+TGG | 0.461025 | 8.3:+76533140 | MS.gene020033:CDS |
| AGTTTGGAGTCTTACTAAAT+GGG | 0.465554 | 8.3:+76531891 | MS.gene020033:CDS |
| TCTGCTGCATCTGGTGCTGT+TGG | 0.470418 | 8.3:+76532180 | MS.gene020033:CDS |
| TTGTTTGAGTACAGGTATGC+CGG | 0.481096 | 8.3:+76532092 | MS.gene020033:intron |
| ACTGCCTAATTCAAAGAAAC+CGG | 0.485002 | 8.3:-76532130 | None:intergenic |
| GAGTAATTGCAGCCACTGAC+AGG | 0.490838 | 8.3:+76531811 | MS.gene020033:intron |
| ATTCCAGTATAATAGGAAAG+TGG | 0.506284 | 8.3:-76531970 | None:intergenic |
| AGAGCATGGCTTACAGAACC+AGG | 0.506477 | 8.3:-76531670 | None:intergenic |
| AAGTGCTGGTACTAAAGAAA+AGG | 0.512574 | 8.3:+76532251 | MS.gene020033:CDS |
| CTATACAGTGGTCGCAATGT+TGG | 0.518357 | 8.3:+76533210 | MS.gene020033:CDS |
| GTCCTGCCTCTTATAAGAGA+AGG | 0.533643 | 8.3:+76533123 | MS.gene020033:CDS |
| GAATTAGGCAGTCCTAAGAA+AGG | 0.538058 | 8.3:+76532141 | MS.gene020033:CDS |
| ATAGCTGAGGGTCTTGAGAA+TGG | 0.538619 | 8.3:+76533168 | MS.gene020033:CDS |
| CATGGTCGCATACCTGTAAG+TGG | 0.550433 | 8.3:+76532967 | MS.gene020033:CDS |
| TTCCAGTATAATAGGAAAGT+GGG | 0.557235 | 8.3:-76531969 | None:intergenic |
| TATAGGCCAATCAATGCAGC+AGG | 0.558750 | 8.3:-76533192 | None:intergenic |
| CATTTACTTTGAGAATGTTG+GGG | 0.558888 | 8.3:+76532906 | MS.gene020033:CDS |
| CCGGGAATGACTGCATATGC+CGG | 0.559406 | 8.3:+76532111 | MS.gene020033:CDS |
| ATATAAGCGGATTCGGATCG+AGG | 0.562832 | 8.3:+76533050 | MS.gene020033:CDS |
| GCCTCTTATAAGAGAAGGAA+AGG | 0.563797 | 8.3:+76533128 | MS.gene020033:CDS |
| GAACAAGCAAGTGATTCTAA+AGG | 0.564959 | 8.3:+76531463 | MS.gene020033:CDS |
| TGTTTGAGTACAGGTATGCC+GGG | 0.570748 | 8.3:+76532093 | MS.gene020033:intron |
| CACTTACAGGTATGCGACCA+TGG | 0.572085 | 8.3:-76532966 | None:intergenic |
| TTCCTGAGATGGCGGAAGTG+AGG | 0.583404 | 8.3:+76531441 | None:intergenic |
| TAAATTAGGTACTTTCCAGA+AGG | 0.591735 | 8.3:+76532877 | MS.gene020033:intron |
| TATAAGCGGATTCGGATCGA+GGG | 0.614787 | 8.3:+76533051 | MS.gene020033:CDS |
| TGGCACAAATCATATATAAG+CGG | 0.616296 | 8.3:+76533037 | MS.gene020033:CDS |
| GATACTCCAAAGCCTGTCAG+TGG | 0.639959 | 8.3:-76531823 | None:intergenic |
| CATCGTTGGAACCTTGTGGA+AGG | 0.641666 | 8.3:-76531550 | None:intergenic |
| TACAATCTTACTCAACCTGA+AGG | 0.650544 | 8.3:+76533003 | MS.gene020033:CDS |
| GGTCAATTTGCAAAACTGCA+TGG | 0.653462 | 8.3:+76532213 | MS.gene020033:CDS |
| GAGCATGGCTTACAGAACCA+GGG | 0.660009 | 8.3:-76531669 | None:intergenic |
| ATTTACTTTGAGAATGTTGG+GGG | 0.663382 | 8.3:+76532907 | MS.gene020033:CDS |
| AGCATGGCTTACAGAACCAG+GGG | 0.671942 | 8.3:-76531668 | None:intergenic |
| ATAACTCTCAACCTTCCACA+AGG | 0.682324 | 8.3:+76531539 | MS.gene020033:CDS |
| TCGCAATGTTGGTAAACAAG+TGG | 0.707437 | 8.3:+76533221 | MS.gene020033:CDS |
| GCATTGATTGGCCTATACAG+TGG | 0.725348 | 8.3:+76533198 | MS.gene020033:CDS |
| GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:+76533155 | MS.gene020033:CDS |
| TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:+76533156 | MS.gene020033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATCAATTTATGTAAATT+AGG | + | chr8.3:76532863-76532882 | MS.gene020033:intron | 15.0% |
| !!! | AAAAATACTATTTTCAAGTT+TGG | + | chr8.3:76532460-76532479 | MS.gene020033:intron | 15.0% |
| !! | AAATCATCTTTCTTATAATC+TGG | - | chr8.3:76531871-76531890 | None:intergenic | 20.0% |
| !! | ACAGTAGAATAAATAATCAT+TGG | - | chr8.3:76532346-76532365 | None:intergenic | 20.0% |
| !! | ATAAGAAAGATGATTTAGTT+TGG | + | chr8.3:76531875-76531894 | MS.gene020033:CDS | 20.0% |
| !! | ATATTAAATGAACTGAATTG+TGG | + | chr8.3:76532499-76532518 | MS.gene020033:intron | 20.0% |
| !! | TGTTAAAAAACACAACAAAA+TGG | - | chr8.3:76532060-76532079 | None:intergenic | 20.0% |
| !!! | ATAATCATTGGTTTTTTCTT+AGG | - | chr8.3:76532334-76532353 | None:intergenic | 20.0% |
| !!! | GATCTTTTGAAGAATAAATT+TGG | + | chr8.3:76532533-76532552 | MS.gene020033:CDS | 20.0% |
| !!! | TAATCATTGGTTTTTTCTTA+GGG | - | chr8.3:76532333-76532352 | None:intergenic | 20.0% |
| ! | TCACCTTTATACAAAATTCT+TGG | + | chr8.3:76533095-76533114 | MS.gene020033:CDS | 25.0% |
| !! | AAATCATATATAAGCGGATT+CGG | + | chr8.3:76533043-76533062 | MS.gene020033:CDS | 25.0% |
| !! | ACATTTACTTTGAGAATGTT+GGG | + | chr8.3:76532905-76532924 | MS.gene020033:CDS | 25.0% |
| !! | ACTCCAAGAATTTTGTATAA+AGG | - | chr8.3:76533101-76533120 | None:intergenic | 25.0% |
| !!! | AATCATTGGTTTTTTCTTAG+GGG | - | chr8.3:76532332-76532351 | None:intergenic | 25.0% |
| !!! | TGATGATTCATTATTTTTGC+AGG | - | chr8.3:76532305-76532324 | None:intergenic | 25.0% |
| AACATAGTTGCAATTGATCA+AGG | + | chr8.3:76531730-76531749 | MS.gene020033:intron | 30.0% | |
| ACCAAGAATTCCAGTATAAT+AGG | - | chr8.3:76531980-76531999 | None:intergenic | 30.0% | |
| ATGTTCATGTCTGATTCTTT+AGG | - | chr8.3:76531506-76531525 | None:intergenic | 30.0% | |
| ATTCCAGTATAATAGGAAAG+TGG | - | chr8.3:76531973-76531992 | None:intergenic | 30.0% | |
| TAAACATTCTCTCCTTTCTT+AGG | - | chr8.3:76532156-76532175 | None:intergenic | 30.0% | |
| TAAATTAGGTACTTTCCAGA+AGG | + | chr8.3:76532877-76532896 | MS.gene020033:intron | 30.0% | |
| TCCTATTATACTGGAATTCT+TGG | + | chr8.3:76531976-76531995 | MS.gene020033:CDS | 30.0% | |
| TGGCACAAATCATATATAAG+CGG | + | chr8.3:76533037-76533056 | MS.gene020033:CDS | 30.0% | |
| TTCCAGTATAATAGGAAAGT+GGG | - | chr8.3:76531972-76531991 | None:intergenic | 30.0% | |
| ! | AGTTTGGAGTCTTACTAAAT+GGG | + | chr8.3:76531891-76531910 | MS.gene020033:CDS | 30.0% |
| ! | ATTTACTTTGAGAATGTTGG+GGG | + | chr8.3:76532907-76532926 | MS.gene020033:CDS | 30.0% |
| ! | ATTTTGAACATTCCAGTTGT+AGG | - | chr8.3:76531934-76531953 | None:intergenic | 30.0% |
| ! | CATTTACTTTGAGAATGTTG+GGG | + | chr8.3:76532906-76532925 | MS.gene020033:CDS | 30.0% |
| ! | GACATTTACTTTGAGAATGT+TGG | + | chr8.3:76532904-76532923 | MS.gene020033:CDS | 30.0% |
| ! | GTATCTAAAGTTGTAGAATC+TGG | + | chr8.3:76531841-76531860 | MS.gene020033:CDS | 30.0% |
| ! | TAAATGGGAAGAGTATAGTT+TGG | + | chr8.3:76531906-76531925 | MS.gene020033:CDS | 30.0% |
| ! | TAGTTTGGAGTCTTACTAAA+TGG | + | chr8.3:76531890-76531909 | MS.gene020033:CDS | 30.0% |
| !!! | GGATTTTGGTTATTGCAATT+AGG | - | chr8.3:76532394-76532413 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTTTGGAAGTCTT+TGG | + | chr8.3:76532470-76532489 | MS.gene020033:intron | 30.0% |
| AAGTAAATGTCAATGCCTTC+TGG | - | chr8.3:76532895-76532914 | None:intergenic | 35.0% | |
| AATCCATGTCTTTGTTCACT+TGG | + | chr8.3:76532409-76532428 | MS.gene020033:intron | 35.0% | |
| AATTGATGAAAGAGAGAGCA+TGG | - | chr8.3:76531687-76531706 | None:intergenic | 35.0% | |
| ACCTTTCCTTCTCTTATAAG+AGG | - | chr8.3:76533132-76533151 | None:intergenic | 35.0% | |
| ACTGCCTAATTCAAAGAAAC+CGG | - | chr8.3:76532133-76532152 | None:intergenic | 35.0% | |
| ATAACACTGATACATGGACA+CGG | - | chr8.3:76532768-76532787 | None:intergenic | 35.0% | |
| GAACAAGCAAGTGATTCTAA+AGG | + | chr8.3:76531463-76531482 | MS.gene020033:CDS | 35.0% | |
| TACAATCTTACTCAACCTGA+AGG | + | chr8.3:76533003-76533022 | MS.gene020033:CDS | 35.0% | |
| TGTAGTTACCTATGTAGCAT+CGG | + | chr8.3:76532659-76532678 | MS.gene020033:intron | 35.0% | |
| TGTCCATGTATCAGTGTTAT+CGG | + | chr8.3:76532768-76532787 | MS.gene020033:intron | 35.0% | |
| ! | ATTCTAAAGGACTATGTGTC+TGG | + | chr8.3:76531476-76531495 | MS.gene020033:CDS | 35.0% |
| ! | GTGAACAAAGACATGGATTT+TGG | - | chr8.3:76532408-76532427 | None:intergenic | 35.0% |
| ! | TATAGTTTGGTTCCTACAAC+TGG | + | chr8.3:76531919-76531938 | MS.gene020033:CDS | 35.0% |
| !! | AAGTGCTGGTACTAAAGAAA+AGG | + | chr8.3:76532251-76532270 | MS.gene020033:CDS | 35.0% |
| !! | ACCTCAATGCAGCTTTAAAA+AGG | + | chr8.3:76532591-76532610 | MS.gene020033:CDS | 35.0% |
| !! | TATGCCGGTTTCTTTGAATT+AGG | + | chr8.3:76532126-76532145 | MS.gene020033:CDS | 35.0% |
| !! | TTACGCTTTTGTTTGAGTAC+AGG | + | chr8.3:76532084-76532103 | MS.gene020033:intron | 35.0% |
| !!! | ACCTTTTTAAAGCTGCATTG+AGG | - | chr8.3:76532595-76532614 | None:intergenic | 35.0% |
| AGAAGGAAAGGTTGTGTATG+TGG | + | chr8.3:76533140-76533159 | MS.gene020033:CDS | 40.0% | |
| ATAACTCTCAACCTTCCACA+AGG | + | chr8.3:76531539-76531558 | MS.gene020033:CDS | 40.0% | |
| CAACCGATAACACTGATACA+TGG | - | chr8.3:76532774-76532793 | None:intergenic | 40.0% | |
| CATGGACACGGACAATAATT+TGG | - | chr8.3:76532756-76532775 | None:intergenic | 40.0% | |
| CTGCATGGTTGTTATGTTGT+TGG | + | chr8.3:76532228-76532247 | MS.gene020033:CDS | 40.0% | |
| GAATTAGGCAGTCCTAAGAA+AGG | + | chr8.3:76532141-76532160 | MS.gene020033:CDS | 40.0% | |
| GCCTCTTATAAGAGAAGGAA+AGG | + | chr8.3:76533128-76533147 | MS.gene020033:CDS | 40.0% | |
| GGTCAATTTGCAAAACTGCA+TGG | + | chr8.3:76532213-76532232 | MS.gene020033:CDS | 40.0% | |
| GTCCCACTTTCCTATTATAC+TGG | + | chr8.3:76531967-76531986 | MS.gene020033:CDS | 40.0% | |
| TAGAAGTGACTGTGTTGTGA+TGG | - | chr8.3:76532729-76532748 | None:intergenic | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | + | chr8.3:76533156-76533175 | MS.gene020033:CDS | 40.0% | |
| TCACCAAGTGAACAAAGACA+TGG | - | chr8.3:76532415-76532434 | None:intergenic | 40.0% | |
| TGTGAGATCATTCCACTTAC+AGG | - | chr8.3:76532982-76533001 | None:intergenic | 40.0% | |
| TTCCTTCTCTTATAAGAGGC+AGG | - | chr8.3:76533128-76533147 | None:intergenic | 40.0% | |
| TTGTGGAAGGTTGAGAGTTA+TGG | - | chr8.3:76531540-76531559 | None:intergenic | 40.0% | |
| TTGTTTGAGTACAGGTATGC+CGG | + | chr8.3:76532092-76532111 | MS.gene020033:intron | 40.0% | |
| TTTGAGCAGAACAACATCGT+TGG | - | chr8.3:76531567-76531586 | None:intergenic | 40.0% | |
| ! | CTTTTGAATATGCGAGTCCA+TGG | + | chr8.3:76532949-76532968 | MS.gene020033:CDS | 40.0% |
| ! | GCATCGGCACTTTATATTGA+AGG | + | chr8.3:76532675-76532694 | MS.gene020033:intron | 40.0% |
| ! | GTTTATGTTTCTGCTGCATC+TGG | + | chr8.3:76532171-76532190 | MS.gene020033:CDS | 40.0% |
| ! | TCGCAATGTTGGTAAACAAG+TGG | + | chr8.3:76533221-76533240 | MS.gene020033:CDS | 40.0% |
| ! | TGTTATGTTGTTGGAAGTGC+TGG | + | chr8.3:76532237-76532256 | MS.gene020033:CDS | 40.0% |
| ! | TTTAAAGCTGCATTGAGGTC+TGG | - | chr8.3:76532590-76532609 | None:intergenic | 40.0% |
| !! | ACCTGAAGGTGTCACAAATT+TGG | + | chr8.3:76533017-76533036 | MS.gene020033:CDS | 40.0% |
| !! | ATAAAGTGCCGATGCTACAT+AGG | - | chr8.3:76532670-76532689 | None:intergenic | 40.0% |
| ACAACATCGTTGGAACCTTG+TGG | - | chr8.3:76531557-76531576 | None:intergenic | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+TGG | + | chr8.3:76533168-76533187 | MS.gene020033:CDS | 45.0% | |
| CAACATTGCGACCACTGTAT+AGG | - | chr8.3:76533212-76533231 | None:intergenic | 45.0% | |
| CAGGAGTCTCATCTCATGTA+AGG | - | chr8.3:76531611-76531630 | None:intergenic | 45.0% | |
| CTATACAGTGGTCGCAATGT+TGG | + | chr8.3:76533210-76533229 | MS.gene020033:CDS | 45.0% | |
| GAACTGAATTGTGGCACACT+AGG | + | chr8.3:76532508-76532527 | MS.gene020033:intron | 45.0% | |
| GCCAAATTTGTGACACCTTC+AGG | - | chr8.3:76533021-76533040 | None:intergenic | 45.0% | |
| GTATGTGGAAGACATAGCTG+AGG | + | chr8.3:76533155-76533174 | MS.gene020033:CDS | 45.0% | |
| GTCCTGCCTCTTATAAGAGA+AGG | + | chr8.3:76533123-76533142 | MS.gene020033:CDS | 45.0% | |
| TATAGGCCAATCAATGCAGC+AGG | - | chr8.3:76533195-76533214 | None:intergenic | 45.0% | |
| TGTCAGACAGCAACATGTGT+AGG | - | chr8.3:76532706-76532725 | None:intergenic | 45.0% | |
| TGTTTGAGTACAGGTATGCC+GGG | + | chr8.3:76532093-76532112 | MS.gene020033:intron | 45.0% | |
| ! | AATGGTCCTGCTGCATTGAT+TGG | + | chr8.3:76533186-76533205 | MS.gene020033:CDS | 45.0% |
| ! | ATATAAGCGGATTCGGATCG+AGG | + | chr8.3:76533050-76533069 | MS.gene020033:CDS | 45.0% |
| ! | TATAAGCGGATTCGGATCGA+GGG | + | chr8.3:76533051-76533070 | MS.gene020033:CDS | 45.0% |
| !! | GCATTGATTGGCCTATACAG+TGG | + | chr8.3:76533198-76533217 | MS.gene020033:CDS | 45.0% |
| AAGGACACTACTGCAGGACT+TGG | + | chr8.3:76531637-76531656 | MS.gene020033:intron | 50.0% | |
| AAGTCCTGCAGTAGTGTCCT+TGG | - | chr8.3:76531638-76531657 | None:intergenic | 50.0% | |
| AGAGCATGGCTTACAGAACC+AGG | - | chr8.3:76531673-76531692 | None:intergenic | 50.0% | |
| AGCATGGCTTACAGAACCAG+GGG | - | chr8.3:76531671-76531690 | None:intergenic | 50.0% | |
| ATGACCAAGGACACTACTGC+AGG | + | chr8.3:76531631-76531650 | MS.gene020033:intron | 50.0% | |
| CACTTACAGGTATGCGACCA+TGG | - | chr8.3:76532969-76532988 | None:intergenic | 50.0% | |
| CAGTAGTGTCCTTGGTCATC+AGG | - | chr8.3:76531630-76531649 | None:intergenic | 50.0% | |
| CATCGTTGGAACCTTGTGGA+AGG | - | chr8.3:76531553-76531572 | None:intergenic | 50.0% | |
| CATGGTCGCATACCTGTAAG+TGG | + | chr8.3:76532967-76532986 | MS.gene020033:CDS | 50.0% | |
| CTGAATTGTGGCACACTAGG+TGG | + | chr8.3:76532511-76532530 | MS.gene020033:intron | 50.0% | |
| GAGCATGGCTTACAGAACCA+GGG | - | chr8.3:76531672-76531691 | None:intergenic | 50.0% | |
| GAGTAATTGCAGCCACTGAC+AGG | + | chr8.3:76531811-76531830 | MS.gene020033:intron | 50.0% | |
| GATACTCCAAAGCCTGTCAG+TGG | - | chr8.3:76531826-76531845 | None:intergenic | 50.0% | |
| GATGAGACTCCTGATGACCA+AGG | + | chr8.3:76531618-76531637 | MS.gene020033:intron | 50.0% | |
| !! | GGTGCTGTTGGTCAACTTGT+AGG | + | chr8.3:76532192-76532211 | MS.gene020033:CDS | 50.0% |
| CCGGCATATGCAGTCATTCC+CGG | - | chr8.3:76532114-76532133 | None:intergenic | 55.0% | |
| CCGGGAATGACTGCATATGC+CGG | + | chr8.3:76532111-76532130 | MS.gene020033:CDS | 55.0% | |
| TTGCAGCCACTGACAGGCTT+TGG | + | chr8.3:76531817-76531836 | MS.gene020033:intron | 55.0% | |
| !! | TCTGCTGCATCTGGTGCTGT+TGG | + | chr8.3:76532180-76532199 | MS.gene020033:CDS | 55.0% |
| !! | GGACTTGGTGCTCTCACCCC+TGG | + | chr8.3:76531652-76531671 | MS.gene020033:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 76531449 | 76533263 | 76531449 | ID=MS.gene020033 |
| chr8.3 | mRNA | 76531449 | 76533263 | 76531449 | ID=MS.gene020033.t1;Parent=MS.gene020033 |
| chr8.3 | exon | 76531449 | 76531560 | 76531449 | ID=MS.gene020033.t1.exon1;Parent=MS.gene020033.t1 |
| chr8.3 | CDS | 76531449 | 76531560 | 76531449 | ID=cds.MS.gene020033.t1;Parent=MS.gene020033.t1 |
| chr8.3 | exon | 76531653 | 76531678 | 76531653 | ID=MS.gene020033.t1.exon2;Parent=MS.gene020033.t1 |
| chr8.3 | CDS | 76531653 | 76531678 | 76531653 | ID=cds.MS.gene020033.t1;Parent=MS.gene020033.t1 |
| chr8.3 | exon | 76531823 | 76531997 | 76531823 | ID=MS.gene020033.t1.exon3;Parent=MS.gene020033.t1 |
| chr8.3 | CDS | 76531823 | 76531997 | 76531823 | ID=cds.MS.gene020033.t1;Parent=MS.gene020033.t1 |
| chr8.3 | exon | 76532106 | 76532272 | 76532106 | ID=MS.gene020033.t1.exon4;Parent=MS.gene020033.t1 |
| chr8.3 | CDS | 76532106 | 76532272 | 76532106 | ID=cds.MS.gene020033.t1;Parent=MS.gene020033.t1 |
| chr8.3 | exon | 76532530 | 76532612 | 76532530 | ID=MS.gene020033.t1.exon5;Parent=MS.gene020033.t1 |
| chr8.3 | CDS | 76532530 | 76532612 | 76532530 | ID=cds.MS.gene020033.t1;Parent=MS.gene020033.t1 |
| chr8.3 | exon | 76532885 | 76533263 | 76532885 | ID=MS.gene020033.t1.exon6;Parent=MS.gene020033.t1 |
| chr8.3 | CDS | 76532885 | 76533263 | 76532885 | ID=cds.MS.gene020033.t1;Parent=MS.gene020033.t1 |
| Gene Sequence |
| Protein sequence |
