Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020228.t1 | XP_013443994.1 | 97.7 | 345 | 7 | 1 | 1 | 345 | 1 | 344 | 1.60E-195 | 691.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020228.t1 | Q39173 | 69.7 | 340 | 103 | 0 | 6 | 345 | 4 | 343 | 8.8e-142 | 504.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020228.t1 | A0A072TLD0 | 97.7 | 345 | 7 | 1 | 1 | 345 | 1 | 344 | 1.2e-195 | 691.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene020228 | MS.gene022722 | PPI |
MS.gene020228 | MS.gene97874 | PPI |
MS.gene08162 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene020076 | PPI |
MS.gene020033 | MS.gene020228 | PPI |
MS.gene020225 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene022738 | PPI |
MS.gene020228 | MS.gene39326 | PPI |
MS.gene020228 | MS.gene39313 | PPI |
MS.gene022722 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene067859 | PPI |
MS.gene020077 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene022721 | PPI |
MS.gene020228 | MS.gene022736 | PPI |
MS.gene020228 | MS.gene39312 | PPI |
MS.gene020228 | MS.gene020033 | PPI |
MS.gene39327 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene022737 | PPI |
MS.gene39312 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene41778 | PPI |
MS.gene020228 | MS.gene022735 | PPI |
MS.gene020228 | MS.gene042467 | PPI |
MS.gene020228 | MS.gene45375 | PPI |
MS.gene020228 | MS.gene020226 | PPI |
MS.gene020228 | MS.gene020227 | PPI |
MS.gene020228 | MS.gene069341 | PPI |
MS.gene39315 | MS.gene020228 | PPI |
MS.gene020228 | MS.gene54433 | PPI |
MS.gene020228 | MS.gene39314 | PPI |
MS.gene54434 | MS.gene020228 | PPI |
MS.gene020239 | MS.gene020228 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020228.t1 | MTR_8g009980 | 97.681 | 345 | 7 | 1 | 1 | 345 | 1 | 344 | 0.0 | 692 |
MS.gene020228.t1 | MTR_8g010030 | 82.081 | 346 | 59 | 3 | 1 | 345 | 1 | 344 | 0.0 | 585 |
MS.gene020228.t1 | MTR_8g009820 | 81.214 | 346 | 61 | 3 | 1 | 345 | 60 | 402 | 0.0 | 568 |
MS.gene020228.t1 | MTR_8g009840 | 82.059 | 340 | 56 | 4 | 1 | 339 | 1 | 336 | 0.0 | 558 |
MS.gene020228.t1 | MTR_8g009830 | 80.347 | 346 | 63 | 4 | 1 | 345 | 1 | 342 | 0.0 | 552 |
MS.gene020228.t1 | MTR_8g010020 | 74.203 | 345 | 56 | 2 | 1 | 345 | 1 | 312 | 0.0 | 522 |
MS.gene020228.t1 | MTR_8g010000 | 72.254 | 346 | 68 | 4 | 1 | 345 | 1 | 319 | 0.0 | 512 |
MS.gene020228.t1 | MTR_4g082970 | 68.129 | 342 | 108 | 1 | 4 | 345 | 10 | 350 | 8.22e-168 | 471 |
MS.gene020228.t1 | MTR_7g406860 | 60.231 | 347 | 133 | 4 | 1 | 345 | 3 | 346 | 3.09e-145 | 414 |
MS.gene020228.t1 | MTR_8g007325 | 81.448 | 221 | 37 | 3 | 1 | 220 | 1 | 218 | 1.49e-124 | 357 |
MS.gene020228.t1 | MTR_0011s0280 | 46.398 | 347 | 180 | 3 | 3 | 345 | 2 | 346 | 2.02e-110 | 325 |
MS.gene020228.t1 | MTR_2g088190 | 41.499 | 347 | 191 | 8 | 4 | 342 | 5 | 347 | 5.11e-78 | 243 |
MS.gene020228.t1 | MTR_2g088220 | 41.954 | 348 | 188 | 9 | 4 | 342 | 6 | 348 | 6.73e-74 | 232 |
MS.gene020228.t1 | MTR_2g088200 | 39.692 | 325 | 185 | 7 | 4 | 320 | 5 | 326 | 6.47e-68 | 217 |
MS.gene020228.t1 | MTR_5g095030 | 53.906 | 128 | 59 | 0 | 216 | 343 | 9 | 136 | 1.77e-46 | 154 |
MS.gene020228.t1 | MTR_4g086410 | 35.885 | 209 | 126 | 4 | 140 | 342 | 416 | 622 | 2.79e-24 | 104 |
MS.gene020228.t1 | MTR_4g086400 | 35.885 | 209 | 126 | 5 | 140 | 342 | 276 | 482 | 2.93e-24 | 103 |
MS.gene020228.t1 | MTR_4g086400 | 35.885 | 209 | 126 | 5 | 140 | 342 | 416 | 622 | 4.29e-24 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020228.t1 | AT5G16990 | 69.706 | 340 | 103 | 0 | 6 | 345 | 4 | 343 | 4.02e-180 | 502 |
MS.gene020228.t1 | AT5G16970 | 69.501 | 341 | 103 | 1 | 6 | 345 | 5 | 345 | 2.02e-179 | 501 |
MS.gene020228.t1 | AT3G03080 | 71.098 | 346 | 96 | 3 | 2 | 345 | 7 | 350 | 2.29e-179 | 501 |
MS.gene020228.t1 | AT5G17000 | 69.501 | 341 | 103 | 1 | 6 | 345 | 5 | 345 | 1.70e-177 | 496 |
MS.gene020228.t1 | AT1G26320 | 68.696 | 345 | 103 | 2 | 4 | 345 | 9 | 351 | 3.52e-176 | 493 |
MS.gene020228.t1 | AT5G37980 | 68.023 | 344 | 104 | 2 | 6 | 345 | 12 | 353 | 2.44e-173 | 486 |
MS.gene020228.t1 | AT5G16960 | 67.733 | 344 | 110 | 1 | 1 | 343 | 1 | 344 | 9.09e-173 | 484 |
MS.gene020228.t1 | AT5G16960 | 67.733 | 344 | 110 | 1 | 1 | 343 | 1 | 344 | 9.09e-173 | 484 |
MS.gene020228.t1 | AT5G37940 | 67.251 | 342 | 110 | 1 | 6 | 345 | 12 | 353 | 2.60e-172 | 483 |
MS.gene020228.t1 | AT1G26320 | 67.536 | 345 | 102 | 3 | 4 | 345 | 9 | 346 | 1.39e-171 | 481 |
MS.gene020228.t1 | AT5G38000 | 66.181 | 343 | 110 | 2 | 6 | 344 | 12 | 352 | 2.32e-169 | 475 |
MS.gene020228.t1 | AT5G38000 | 64.793 | 338 | 110 | 3 | 6 | 336 | 12 | 347 | 9.98e-162 | 456 |
MS.gene020228.t1 | AT3G59845 | 63.663 | 344 | 119 | 4 | 4 | 343 | 5 | 346 | 4.11e-156 | 442 |
MS.gene020228.t1 | AT5G38000 | 62.391 | 343 | 104 | 3 | 6 | 344 | 12 | 333 | 9.25e-154 | 435 |
MS.gene020228.t1 | AT1G65560 | 58.671 | 346 | 137 | 5 | 4 | 345 | 7 | 350 | 5.81e-137 | 393 |
MS.gene020228.t1 | AT5G16980 | 57.681 | 345 | 106 | 5 | 1 | 345 | 1 | 305 | 3.41e-133 | 382 |
MS.gene020228.t1 | AT5G16980 | 75.664 | 226 | 55 | 0 | 120 | 345 | 14 | 239 | 3.34e-125 | 359 |
MS.gene020228.t1 | AT5G16980 | 75.664 | 226 | 55 | 0 | 120 | 345 | 14 | 239 | 3.34e-125 | 359 |
MS.gene020228.t1 | AT3G59845 | 70.325 | 246 | 70 | 2 | 99 | 343 | 1 | 244 | 6.78e-123 | 353 |
MS.gene020228.t1 | AT1G65560 | 61.255 | 271 | 102 | 3 | 78 | 345 | 4 | 274 | 2.30e-112 | 328 |
MS.gene020228.t1 | AT5G17000 | 69.907 | 216 | 64 | 1 | 6 | 220 | 5 | 220 | 1.30e-109 | 320 |
MS.gene020228.t1 | AT1G49670 | 31.677 | 322 | 195 | 11 | 33 | 342 | 310 | 618 | 7.12e-26 | 108 |
MS.gene020228.t1 | AT1G49670 | 29.825 | 342 | 198 | 12 | 33 | 342 | 310 | 641 | 6.49e-23 | 100 |
MS.gene020228.t1 | AT5G37960 | 50.667 | 75 | 37 | 0 | 266 | 340 | 27 | 101 | 4.99e-18 | 79.0 |
Find 88 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCCAAGAATTTAGGATTT+AGG | 0.194891 | 8.3:-78421347 | None:intergenic |
TCACCTAAATCCTAAATTCT+TGG | 0.229492 | 8.3:+78421344 | MS.gene020228:CDS |
ACCTGAACCTGTAACGAATT+TGG | 0.245348 | 8.3:+78421266 | MS.gene020228:CDS |
GCCAAATTCGTTACAGGTTC+AGG | 0.246307 | 8.3:-78421267 | None:intergenic |
ATAAGGAAGGTGATTTAGTT+TGG | 0.258281 | 8.3:+78419361 | MS.gene020228:CDS |
AGGACAAACTCCAAGAATTT+AGG | 0.263093 | 8.3:-78421354 | None:intergenic |
ATGTTCATGTCTGATTCTTT+AGG | 0.265462 | 8.3:-78418834 | None:intergenic |
AAAACAGTCTCTCCTTTCTT+AGG | 0.292283 | 8.3:-78420290 | None:intergenic |
TTACAGGTAATAGCAGGTTT+TGG | 0.310515 | 8.3:+78419303 | MS.gene020228:intron |
AGATGTGCCAAATTCGTTAC+AGG | 0.319604 | 8.3:-78421273 | None:intergenic |
TAAGGAAGGTGATTTAGTTT+GGG | 0.330541 | 8.3:+78419362 | MS.gene020228:CDS |
AAGTAAATATCAATGCCTTC+AGG | 0.336754 | 8.3:-78421141 | None:intergenic |
ATCAGGACATCCTGATTATA+AGG | 0.342738 | 8.3:+78419344 | MS.gene020228:CDS |
GGTGTATGCAAGAGGATTAA+TGG | 0.357458 | 8.3:-78418976 | None:intergenic |
AAGAATAAATTTGGATTTGA+CGG | 0.374698 | 8.3:+78420913 | MS.gene020228:CDS |
GTCCCACTTTCCTACTATAC+TGG | 0.376088 | 8.3:+78419459 | MS.gene020228:CDS |
TAGTTTGGGGATTCTGCAAA+TGG | 0.386130 | 8.3:+78419376 | MS.gene020228:CDS |
TTCATGAGATTCCTCATGAA+TGG | 0.393169 | 8.3:-78418936 | None:intergenic |
TTGAAAAGTATTTGAGAAGA+AGG | 0.402222 | 8.3:-78419420 | None:intergenic |
AAATCACCTTCCTTATAATC+AGG | 0.409142 | 8.3:-78419354 | None:intergenic |
AAGCTTTAACATACAGATTG+AGG | 0.419166 | 8.3:-78418999 | None:intergenic |
TCCTACTATACTGGAATTCT+CGG | 0.425528 | 8.3:+78419468 | MS.gene020228:CDS |
TTCAAAGCTGCATCGAGGTC+AGG | 0.432481 | 8.3:-78420958 | None:intergenic |
GGTGCAGTCGGTCAACTTGT+TGG | 0.439651 | 8.3:+78420329 | MS.gene020228:CDS |
CCAGCATAAGCAGTTATTCC+TGG | 0.442475 | 8.3:-78420248 | None:intergenic |
GTGTCTAAAGTCCTTGAATC+AGG | 0.445040 | 8.3:+78419327 | MS.gene020228:CDS |
GTGTATGCAAGAGGATTAAT+GGG | 0.451553 | 8.3:-78418975 | None:intergenic |
CTGACAGGATGTTATGTTGT+AGG | 0.455877 | 8.3:+78420365 | MS.gene020228:CDS |
TGTTATGTTGTAGGAAGTGC+TGG | 0.456488 | 8.3:+78420374 | MS.gene020228:CDS |
AATCAGGATGTCCTGATTCA+AGG | 0.467897 | 8.3:-78419338 | None:intergenic |
AATGGTCCTGCAGCATTGAT+TGG | 0.469066 | 8.3:+78421435 | MS.gene020228:CDS |
GATATTTACTTTGAGAATGT+TGG | 0.469382 | 8.3:+78421153 | MS.gene020228:CDS |
CAACATTGCGACCACTATAC+AGG | 0.474009 | 8.3:-78421458 | None:intergenic |
TCTTTGAACACAGGTATGCC+AGG | 0.489073 | 8.3:+78420230 | MS.gene020228:intron |
CACAAGCAGGTATGCGGCCA+TGG | 0.491073 | 8.3:-78421215 | None:intergenic |
CAGTAATTACAGGTAATAGC+AGG | 0.502936 | 8.3:+78419297 | MS.gene020228:intron |
ACCGAGAATTCCAGTATAGT+AGG | 0.503877 | 8.3:-78419469 | None:intergenic |
TGAAAAGTATTTGAGAAGAA+GGG | 0.510299 | 8.3:-78419419 | None:intergenic |
ACCTCGATGCAGCTTTGAAG+AGG | 0.517469 | 8.3:+78420962 | MS.gene020228:CDS |
CCAGGAATAACTGCTTATGC+TGG | 0.521588 | 8.3:+78420248 | MS.gene020228:CDS |
ATTTACTTTGAGAATGTTGG+AGG | 0.524827 | 8.3:+78421156 | MS.gene020228:CDS |
GGTCAATTCGCTAAACTGAC+AGG | 0.527324 | 8.3:+78420350 | MS.gene020228:CDS |
ATTCCAGTATAGTAGGAAAG+TGG | 0.530249 | 8.3:-78419462 | None:intergenic |
CAAATGGGAAGAGTACAGTT+TGG | 0.532103 | 8.3:+78419392 | MS.gene020228:CDS |
ATAACTGAGGGTCTTGAGAA+TGG | 0.532568 | 8.3:+78421417 | MS.gene020228:CDS |
AGCTTTAACATACAGATTGA+GGG | 0.532915 | 8.3:-78418998 | None:intergenic |
ATACTGAAGGACTATGTGTC+TGG | 0.534384 | 8.3:+78418807 | MS.gene020228:CDS |
AGTAAATATCAATGCCTTCA+GGG | 0.538437 | 8.3:-78421140 | None:intergenic |
TATGCTGGTTTCTTTGAACT+AGG | 0.545755 | 8.3:+78420263 | MS.gene020228:CDS |
TACAGGCCAATCAATGCTGC+AGG | 0.549132 | 8.3:-78421441 | None:intergenic |
TCAGCTGCCTCTGGTGCAGT+CGG | 0.551705 | 8.3:+78420317 | MS.gene020228:CDS |
AATAAATTTGGATTTGACGG+AGG | 0.551855 | 8.3:+78420916 | MS.gene020228:CDS |
TCCTCCCTCATATCAGAGAC+GGG | 0.552336 | 8.3:+78421373 | MS.gene020228:CDS |
AAGGAAGGTGATTTAGTTTG+GGG | 0.554385 | 8.3:+78419363 | MS.gene020228:CDS |
GTCCTCCCTCATATCAGAGA+CGG | 0.557651 | 8.3:+78421372 | MS.gene020228:CDS |
AAGTGCTGGAAGTAAAGAGA+AGG | 0.561804 | 8.3:+78420388 | MS.gene020228:CDS |
GAACTAGGCAGTCCTAAGAA+AGG | 0.566199 | 8.3:+78420278 | MS.gene020228:CDS |
CATATATAAGCGGATTCGAA+TGG | 0.569235 | 8.3:+78421296 | MS.gene020228:CDS |
GCATTGATTGGCCTGTATAG+TGG | 0.570454 | 8.3:+78421447 | MS.gene020228:CDS |
CTTCTGAATATGAGAGTCCA+TGG | 0.570985 | 8.3:+78421198 | MS.gene020228:CDS |
CTGTATAGTGGTCGCAATGT+TGG | 0.571188 | 8.3:+78421459 | MS.gene020228:CDS |
TATAAGCGGATTCGAATGGA+AGG | 0.574885 | 8.3:+78421300 | MS.gene020228:CDS |
GGACATCCTGATTATAAGGA+AGG | 0.575310 | 8.3:+78419348 | MS.gene020228:CDS |
AGTTTGGGGATTCTGCAAAT+GGG | 0.577655 | 8.3:+78419377 | MS.gene020228:CDS |
TGACGGAGGTTTCAACTACA+AGG | 0.579141 | 8.3:+78420930 | MS.gene020228:CDS |
TTCCAGTATAGTAGGAAAGT+GGG | 0.584748 | 8.3:-78419461 | None:intergenic |
TGTGAGATCATTCCACAAGC+AGG | 0.587370 | 8.3:-78421228 | None:intergenic |
CAAATCAGGCACTTCCCTGA+AGG | 0.588407 | 8.3:+78421126 | MS.gene020228:intron |
CATGGCCGCATACCTGCTTG+TGG | 0.591190 | 8.3:+78421216 | MS.gene020228:CDS |
ATGGGAAGAGTACAGTTTGG+TGG | 0.596340 | 8.3:+78419395 | MS.gene020228:CDS |
GGATTAATGGGAGCTCCTTG+TGG | 0.608435 | 8.3:-78418963 | None:intergenic |
TGGCACATCTCATATATAAG+CGG | 0.622685 | 8.3:+78421286 | MS.gene020228:CDS |
GATTGAGGGGTGTATGCAAG+AGG | 0.633379 | 8.3:-78418984 | None:intergenic |
TCCCGTCTCTGATATGAGGG+AGG | 0.638712 | 8.3:-78421374 | None:intergenic |
GCTTTAACATACAGATTGAG+GGG | 0.639033 | 8.3:-78418997 | None:intergenic |
AGAATATCATTGGAACCTTG+TGG | 0.639489 | 8.3:-78418885 | None:intergenic |
ATTACTCTTAAGCTTCCACA+AGG | 0.646103 | 8.3:+78418870 | MS.gene020228:CDS |
TGTCTTGTGATCCATTCATG+AGG | 0.654206 | 8.3:+78418925 | MS.gene020228:CDS |
TCATTCCACAAGCAGGTATG+CGG | 0.655597 | 8.3:-78421221 | None:intergenic |
TACCAAACATGGCACAAGTG+AGG | 0.656499 | 8.3:+78418772 | None:intergenic |
AAGTTGACCGACTGCACCAG+AGG | 0.660264 | 8.3:-78420324 | None:intergenic |
ATAAGCGGATTCGAATGGAA+GGG | 0.669316 | 8.3:+78421301 | MS.gene020228:CDS |
GAACAAGCAAGTGATACTGA+AGG | 0.679731 | 8.3:+78418794 | MS.gene020228:CDS |
ACCTCTTCAAAGCTGCATCG+AGG | 0.685554 | 8.3:-78420963 | None:intergenic |
TCGCAATGTTGGTAAACAAG+TGG | 0.707437 | 8.3:+78421470 | MS.gene020228:CDS |
AATCTCATGAACAAACCACA+AGG | 0.737957 | 8.3:+78418948 | MS.gene020228:CDS |
TATGTTGAAGACATAACTGA+GGG | 0.741574 | 8.3:+78421405 | MS.gene020228:CDS |
GTATGTTGAAGACATAACTG+AGG | 0.767481 | 8.3:+78421404 | MS.gene020228:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACATTATATATACAAATA+AGG | - | chr8.3:78420637-78420656 | None:intergenic | 10.0% |
!! | CATAAGTTTATAAATTATAA+TGG | - | chr8.3:78421051-78421070 | None:intergenic | 10.0% |
!!! | TTTAATTTTATTTTTTGGAT+AGG | - | chr8.3:78420599-78420618 | None:intergenic | 10.0% |
!!! | TTTCAATTTATATTGATTTA+TGG | + | chr8.3:78419505-78419524 | MS.gene020228:intron | 10.0% |
!!! | AACTACTGAATTTTATTATT+CGG | - | chr8.3:78421082-78421101 | None:intergenic | 15.0% |
!!! | TATAATTTTTCAGTAATTAC+AGG | + | chr8.3:78419287-78419306 | MS.gene020228:intron | 15.0% |
!! | AAAATTTGCATAATGAATTG+TGG | + | chr8.3:78420776-78420795 | MS.gene020228:intron | 20.0% |
!! | AAATTTGACATATACTCAAA+AGG | - | chr8.3:78419036-78419055 | None:intergenic | 20.0% |
!! | AAGAATAAATTTGGATTTGA+CGG | + | chr8.3:78420913-78420932 | MS.gene020228:CDS | 20.0% |
!! | AAGGAGTTATAAAGTTATAA+AGG | + | chr8.3:78420510-78420529 | MS.gene020228:intron | 20.0% |
!! | AATGAGAACATTAAAAACTT+AGG | - | chr8.3:78420111-78420130 | None:intergenic | 20.0% |
!! | AATTTGACATATACTCAAAA+GGG | - | chr8.3:78419035-78419054 | None:intergenic | 20.0% |
!! | AGATAAGAAAAGATACTTTA+AGG | - | chr8.3:78419062-78419081 | None:intergenic | 20.0% |
!! | CAATTATGAAAAGAAGAAAA+TGG | - | chr8.3:78420013-78420032 | None:intergenic | 20.0% |
!! | CAGTAAAAAAAAACTATTTC+AGG | - | chr8.3:78420826-78420845 | None:intergenic | 20.0% |
!! | TATATATACAAATAAGGAAC+AGG | - | chr8.3:78420631-78420650 | None:intergenic | 20.0% |
!! | TATATCGAAATATACAAATC+AGG | + | chr8.3:78421112-78421131 | MS.gene020228:intron | 20.0% |
!! | TATCACTATCATTAAACAAT+AGG | + | chr8.3:78419891-78419910 | MS.gene020228:intron | 20.0% |
!!! | AATGTATGTATACAGTTTTA+TGG | + | chr8.3:78420650-78420669 | MS.gene020228:intron | 20.0% |
!!! | AATTGAAGGTTATTTAGAAT+TGG | + | chr8.3:78420028-78420047 | MS.gene020228:intron | 20.0% |
!!! | ATTTTTTAGCAGAATATCAT+TGG | - | chr8.3:78418898-78418917 | None:intergenic | 20.0% |
!!! | GATCTTTTGAAGAATAAATT+TGG | + | chr8.3:78420904-78420923 | MS.gene020228:CDS | 20.0% |
!!! | GGCGATTTAATTTTATTTTT+TGG | - | chr8.3:78420604-78420623 | None:intergenic | 20.0% |
!!! | TATTGTTTAATGATAGTGAT+AGG | - | chr8.3:78419892-78419911 | None:intergenic | 20.0% |
!!! | TTTCTTCTTTTCATAATTGA+AGG | + | chr8.3:78420014-78420033 | MS.gene020228:intron | 20.0% |
!!! | TTTTGTTTAATGAGTAAGTT+AGG | + | chr8.3:78419607-78419626 | MS.gene020228:intron | 20.0% |
! | ATAAAGGTTAAATAAGTCGA+AGG | + | chr8.3:78420491-78420510 | MS.gene020228:intron | 25.0% |
! | CATTAAACAATAGGTATAGT+TGG | + | chr8.3:78419900-78419919 | MS.gene020228:intron | 25.0% |
! | GAAAAGAAGAAAATGGAAAA+GGG | - | chr8.3:78420006-78420025 | None:intergenic | 25.0% |
! | GTTATAAAGTTATAAAGGAC+CGG | + | chr8.3:78420515-78420534 | MS.gene020228:intron | 25.0% |
! | TGAAAAGAAGAAAATGGAAA+AGG | - | chr8.3:78420007-78420026 | None:intergenic | 25.0% |
! | TTATAAAGTTATAAAGGACC+GGG | + | chr8.3:78420516-78420535 | MS.gene020228:intron | 25.0% |
!! | AAAAAAACTATTTCAGGTCT+TGG | - | chr8.3:78420820-78420839 | None:intergenic | 25.0% |
!! | GATATTTACTTTGAGAATGT+TGG | + | chr8.3:78421153-78421172 | MS.gene020228:CDS | 25.0% |
!!! | ATGGTTCTAATGTACAAATT+TGG | + | chr8.3:78420669-78420688 | MS.gene020228:intron | 25.0% |
!!! | ATGTTTTTTTTACAATCAGG+TGG | + | chr8.3:78420882-78420901 | MS.gene020228:intron | 25.0% |
!!! | TGAAAAGTATTTGAGAAGAA+GGG | - | chr8.3:78419422-78419441 | None:intergenic | 25.0% |
!!! | TGCATGTTTTTTTTACAATC+AGG | + | chr8.3:78420879-78420898 | MS.gene020228:intron | 25.0% |
!!! | TTGAAAAGTATTTGAGAAGA+AGG | - | chr8.3:78419423-78419442 | None:intergenic | 25.0% |
AAATCACCTTCCTTATAATC+AGG | - | chr8.3:78419357-78419376 | None:intergenic | 30.0% | |
AAGTAAATATCAATGCCTTC+AGG | - | chr8.3:78421144-78421163 | None:intergenic | 30.0% | |
AATAAATTTGGATTTGACGG+AGG | + | chr8.3:78420916-78420935 | MS.gene020228:CDS | 30.0% | |
ACATGCATTCAAACAAAAGA+AGG | - | chr8.3:78420866-78420885 | None:intergenic | 30.0% | |
AGTAAATATCAATGCCTTCA+GGG | - | chr8.3:78421143-78421162 | None:intergenic | 30.0% | |
ATAAGGAAGGTGATTTAGTT+TGG | + | chr8.3:78419361-78419380 | MS.gene020228:CDS | 30.0% | |
ATGTATCTTCCATGACAAAA+TGG | - | chr8.3:78419937-78419956 | None:intergenic | 30.0% | |
ATGTTCATGTCTGATTCTTT+AGG | - | chr8.3:78418837-78418856 | None:intergenic | 30.0% | |
ATTCAAACAAAAGAAGGACT+AGG | - | chr8.3:78420860-78420879 | None:intergenic | 30.0% | |
CAAACACTAATAATCAGCTA+CGG | - | chr8.3:78419586-78419605 | None:intergenic | 30.0% | |
CAGTATCAATGTAGAGAAAA+TGG | - | chr8.3:78419849-78419868 | None:intergenic | 30.0% | |
TACAAATAAGGAACAGGTTA+TGG | - | chr8.3:78420625-78420644 | None:intergenic | 30.0% | |
TATAAAGTTATAAAGGACCG+GGG | + | chr8.3:78420517-78420536 | MS.gene020228:intron | 30.0% | |
TATGTTGAAGACATAACTGA+GGG | + | chr8.3:78421405-78421424 | MS.gene020228:CDS | 30.0% | |
TCACCTAAATCCTAAATTCT+TGG | + | chr8.3:78421344-78421363 | MS.gene020228:CDS | 30.0% | |
TCGTATCAATAAAACTTGCA+GGG | + | chr8.3:78419812-78419831 | MS.gene020228:intron | 30.0% | |
TTCGTATCAATAAAACTTGC+AGG | + | chr8.3:78419811-78419830 | MS.gene020228:intron | 30.0% | |
! | AAGCTTTAACATACAGATTG+AGG | - | chr8.3:78419002-78419021 | None:intergenic | 30.0% |
! | ACTCCAAGAATTTAGGATTT+AGG | - | chr8.3:78421350-78421369 | None:intergenic | 30.0% |
! | ACTTTTCAAAATTGAGCACA+CGG | + | chr8.3:78419434-78419453 | MS.gene020228:CDS | 30.0% |
! | AGCTTTAACATACAGATTGA+GGG | - | chr8.3:78419001-78419020 | None:intergenic | 30.0% |
! | ATTTACTTTGAGAATGTTGG+AGG | + | chr8.3:78421156-78421175 | MS.gene020228:CDS | 30.0% |
! | GTTAAAAAAGCACAACAGAA+TGG | - | chr8.3:78420196-78420215 | None:intergenic | 30.0% |
! | GTTGAGCTAGTTTGATATAA+AGG | + | chr8.3:78420475-78420494 | MS.gene020228:intron | 30.0% |
! | TAAGGAAGGTGATTTAGTTT+GGG | + | chr8.3:78419362-78419381 | MS.gene020228:CDS | 30.0% |
! | TACAATTTTCTCCTTCACTA+GGG | - | chr8.3:78420549-78420568 | None:intergenic | 30.0% |
! | TTACAATTTTCTCCTTCACT+AGG | - | chr8.3:78420550-78420569 | None:intergenic | 30.0% |
! | TTTTTCCCTCCATTTTCTTT+TGG | - | chr8.3:78420760-78420779 | None:intergenic | 30.0% |
!! | AAATGGAAAAGGGTTGATAA+AGG | - | chr8.3:78419996-78420015 | None:intergenic | 30.0% |
AAAACAGTCTCTCCTTTCTT+AGG | - | chr8.3:78420293-78420312 | None:intergenic | 35.0% | |
AATCTCATGAACAAACCACA+AGG | + | chr8.3:78418948-78418967 | MS.gene020228:CDS | 35.0% | |
AGAATATCATTGGAACCTTG+TGG | - | chr8.3:78418888-78418907 | None:intergenic | 35.0% | |
AGGACAAACTCCAAGAATTT+AGG | - | chr8.3:78421357-78421376 | None:intergenic | 35.0% | |
ATCAGGACATCCTGATTATA+AGG | + | chr8.3:78419344-78419363 | MS.gene020228:CDS | 35.0% | |
ATTACTCTTAAGCTTCCACA+AGG | + | chr8.3:78418870-78418889 | MS.gene020228:CDS | 35.0% | |
ATTCCAGTATAGTAGGAAAG+TGG | - | chr8.3:78419465-78419484 | None:intergenic | 35.0% | |
CAGTAATTACAGGTAATAGC+AGG | + | chr8.3:78419297-78419316 | MS.gene020228:intron | 35.0% | |
CAGTCCTATTTATACTGCAT+AGG | - | chr8.3:78419690-78419709 | None:intergenic | 35.0% | |
GCTTTAACATACAGATTGAG+GGG | - | chr8.3:78419000-78419019 | None:intergenic | 35.0% | |
GTATGTTGAAGACATAACTG+AGG | + | chr8.3:78421404-78421423 | MS.gene020228:CDS | 35.0% | |
GTGTATGCAAGAGGATTAAT+GGG | - | chr8.3:78418978-78418997 | None:intergenic | 35.0% | |
TCCTACTATACTGGAATTCT+CGG | + | chr8.3:78419468-78419487 | MS.gene020228:CDS | 35.0% | |
TCCTATTTATACTGCATAGG+AGG | - | chr8.3:78419687-78419706 | None:intergenic | 35.0% | |
TCCTCCTATGCAGTATAAAT+AGG | + | chr8.3:78419683-78419702 | MS.gene020228:intron | 35.0% | |
TGGCACATCTCATATATAAG+CGG | + | chr8.3:78421286-78421305 | MS.gene020228:CDS | 35.0% | |
TTACCCTTGCCAAAAGAAAA+TGG | + | chr8.3:78420748-78420767 | MS.gene020228:intron | 35.0% | |
TTCATGAGATTCCTCATGAA+TGG | - | chr8.3:78418939-78418958 | None:intergenic | 35.0% | |
TTCCAGTATAGTAGGAAAGT+GGG | - | chr8.3:78419464-78419483 | None:intergenic | 35.0% | |
TTGATTTCAGTCTCATATGC+AGG | + | chr8.3:78419540-78419559 | MS.gene020228:intron | 35.0% | |
! | ATTTTCTTTTGGCAAGGGTA+AGG | - | chr8.3:78420749-78420768 | None:intergenic | 35.0% |
! | CATATATAAGCGGATTCGAA+TGG | + | chr8.3:78421296-78421315 | MS.gene020228:CDS | 35.0% |
! | TACAGGTAATAGCAGGTTTT+GGG | + | chr8.3:78419304-78419323 | MS.gene020228:intron | 35.0% |
! | TTACAGGTAATAGCAGGTTT+TGG | + | chr8.3:78419303-78419322 | MS.gene020228:intron | 35.0% |
! | TTGCGTTTTTCTTTGAACAC+AGG | + | chr8.3:78420221-78420240 | MS.gene020228:intron | 35.0% |
! | TTTTCTTTTGGCAAGGGTAA+GGG | - | chr8.3:78420748-78420767 | None:intergenic | 35.0% |
!! | AAGGAAGGTGATTTAGTTTG+GGG | + | chr8.3:78419363-78419382 | MS.gene020228:CDS | 35.0% |
!! | AATTTAGTTTGTGCTGTGCA+TGG | + | chr8.3:78419084-78419103 | MS.gene020228:intron | 35.0% |
!! | TATGCTGGTTTCTTTGAACT+AGG | + | chr8.3:78420263-78420282 | MS.gene020228:CDS | 35.0% |
AAACTAGCTCCTTCGTGTAT+TGG | + | chr8.3:78419783-78419802 | MS.gene020228:intron | 40.0% | |
AATCAGGATGTCCTGATTCA+AGG | - | chr8.3:78419341-78419360 | None:intergenic | 40.0% | |
ACCGAGAATTCCAGTATAGT+AGG | - | chr8.3:78419472-78419491 | None:intergenic | 40.0% | |
ACCTGAACCTGTAACGAATT+TGG | + | chr8.3:78421266-78421285 | MS.gene020228:CDS | 40.0% | |
AGAGAAGTTATGCAGAGATG+TGG | - | chr8.3:78420084-78420103 | None:intergenic | 40.0% | |
AGATGTGCCAAATTCGTTAC+AGG | - | chr8.3:78421276-78421295 | None:intergenic | 40.0% | |
AGTTTGGGGATTCTGCAAAT+GGG | + | chr8.3:78419377-78419396 | MS.gene020228:CDS | 40.0% | |
ATAACTGAGGGTCTTGAGAA+TGG | + | chr8.3:78421417-78421436 | MS.gene020228:CDS | 40.0% | |
ATACTGAAGGACTATGTGTC+TGG | + | chr8.3:78418807-78418826 | MS.gene020228:CDS | 40.0% | |
ATAGGTATAGTTGGCTGTAG+AGG | + | chr8.3:78419909-78419928 | MS.gene020228:intron | 40.0% | |
CACTAATAATCAGCTACGGT+TGG | - | chr8.3:78419582-78419601 | None:intergenic | 40.0% | |
CCTTGCCAAAAGAAAATGGA+GGG | + | chr8.3:78420752-78420771 | MS.gene020228:intron | 40.0% | |
CGAAGAAAACCAATACACGA+AGG | - | chr8.3:78419795-78419814 | None:intergenic | 40.0% | |
CTGACAGGATGTTATGTTGT+AGG | + | chr8.3:78420365-78420384 | MS.gene020228:CDS | 40.0% | |
CTTCTGAATATGAGAGTCCA+TGG | + | chr8.3:78421198-78421217 | MS.gene020228:CDS | 40.0% | |
GAACAAGCAAGTGATACTGA+AGG | + | chr8.3:78418794-78418813 | MS.gene020228:CDS | 40.0% | |
GGACATCCTGATTATAAGGA+AGG | + | chr8.3:78419348-78419367 | MS.gene020228:CDS | 40.0% | |
GGTGTATGCAAGAGGATTAA+TGG | - | chr8.3:78418979-78418998 | None:intergenic | 40.0% | |
GTATTCTGCACTGAACAGTT+TGG | + | chr8.3:78420988-78421007 | MS.gene020228:intron | 40.0% | |
TAGCTGTTGGTGTATTCTGT+TGG | + | chr8.3:78419631-78419650 | MS.gene020228:intron | 40.0% | |
TAGTTTGGGGATTCTGCAAA+TGG | + | chr8.3:78419376-78419395 | MS.gene020228:CDS | 40.0% | |
TGTCTTGTGATCCATTCATG+AGG | + | chr8.3:78418925-78418944 | MS.gene020228:CDS | 40.0% | |
! | ACAGGTAATAGCAGGTTTTG+GGG | + | chr8.3:78419305-78419324 | MS.gene020228:intron | 40.0% |
! | ATAAGCGGATTCGAATGGAA+GGG | + | chr8.3:78421301-78421320 | MS.gene020228:CDS | 40.0% |
! | ATATGCAGGCCTTATCTGTT+AGG | + | chr8.3:78419554-78419573 | MS.gene020228:intron | 40.0% |
! | ATTTTCCCGTCTCTGATATG+AGG | - | chr8.3:78421381-78421400 | None:intergenic | 40.0% |
! | CAAATGGGAAGAGTACAGTT+TGG | + | chr8.3:78419392-78419411 | MS.gene020228:CDS | 40.0% |
! | CCTCCATTTTCTTTTGGCAA+GGG | - | chr8.3:78420754-78420773 | None:intergenic | 40.0% |
! | GAGTAAGTTAGGTTAGCTGT+TGG | + | chr8.3:78419618-78419637 | MS.gene020228:intron | 40.0% |
! | GTAGAGGATCCATTTTGTCA+TGG | + | chr8.3:78419925-78419944 | MS.gene020228:intron | 40.0% |
! | GTGTCTAAAGTCCTTGAATC+AGG | + | chr8.3:78419327-78419346 | MS.gene020228:CDS | 40.0% |
! | TATAAGCGGATTCGAATGGA+AGG | + | chr8.3:78421300-78421319 | MS.gene020228:CDS | 40.0% |
! | TCGCAATGTTGGTAAACAAG+TGG | + | chr8.3:78421470-78421489 | MS.gene020228:CDS | 40.0% |
! | TGTTATGTTGTAGGAAGTGC+TGG | + | chr8.3:78420374-78420393 | MS.gene020228:CDS | 40.0% |
! | TTTTCCCGTCTCTGATATGA+GGG | - | chr8.3:78421380-78421399 | None:intergenic | 40.0% |
!! | AAGTGCTGGAAGTAAAGAGA+AGG | + | chr8.3:78420388-78420407 | MS.gene020228:CDS | 40.0% |
!! | AGGGTTGATAAAGGCTAAAC+AGG | - | chr8.3:78419987-78420006 | None:intergenic | 40.0% |
!! | GACAGTCTTGTTGCAGAATT+AGG | + | chr8.3:78419709-78419728 | MS.gene020228:intron | 40.0% |
CAACATTGCGACCACTATAC+AGG | - | chr8.3:78421461-78421480 | None:intergenic | 45.0% | |
CCAGCATAAGCAGTTATTCC+TGG | - | chr8.3:78420251-78420270 | None:intergenic | 45.0% | |
CCAGGAATAACTGCTTATGC+TGG | + | chr8.3:78420248-78420267 | MS.gene020228:CDS | 45.0% | |
CCCTTGCCAAAAGAAAATGG+AGG | + | chr8.3:78420751-78420770 | MS.gene020228:intron | 45.0% | |
CTGTATAGTGGTCGCAATGT+TGG | + | chr8.3:78421459-78421478 | MS.gene020228:CDS | 45.0% | |
CTTCACTAGGGTTTAAACCC+CGG | - | chr8.3:78420537-78420556 | None:intergenic | 45.0% | |
GAACTAGGCAGTCCTAAGAA+AGG | + | chr8.3:78420278-78420297 | MS.gene020228:CDS | 45.0% | |
GAGTATGCTCTAGTGAGAAG+AGG | + | chr8.3:78419760-78419779 | MS.gene020228:intron | 45.0% | |
GCCAAATTCGTTACAGGTTC+AGG | - | chr8.3:78421270-78421289 | None:intergenic | 45.0% | |
GGTCAATTCGCTAAACTGAC+AGG | + | chr8.3:78420350-78420369 | MS.gene020228:CDS | 45.0% | |
GTCCCACTTTCCTACTATAC+TGG | + | chr8.3:78419459-78419478 | MS.gene020228:CDS | 45.0% | |
TAGTATGTCACCGTCACCTT+GGG | + | chr8.3:78420443-78420462 | MS.gene020228:intron | 45.0% | |
TCATTCCACAAGCAGGTATG+CGG | - | chr8.3:78421224-78421243 | None:intergenic | 45.0% | |
TCTTTGAACACAGGTATGCC+AGG | + | chr8.3:78420230-78420249 | MS.gene020228:intron | 45.0% | |
TGACGGAGGTTTCAACTACA+AGG | + | chr8.3:78420930-78420949 | MS.gene020228:CDS | 45.0% | |
TGTGAGATCATTCCACAAGC+AGG | - | chr8.3:78421231-78421250 | None:intergenic | 45.0% | |
TTAGTATGTCACCGTCACCT+TGG | + | chr8.3:78420442-78420461 | MS.gene020228:intron | 45.0% | |
! | AAGGTGACGGTGACATACTA+AGG | - | chr8.3:78420443-78420462 | None:intergenic | 45.0% |
! | ATGGGAAGAGTACAGTTTGG+TGG | + | chr8.3:78419395-78419414 | MS.gene020228:CDS | 45.0% |
! | CCCTCCATTTTCTTTTGGCA+AGG | - | chr8.3:78420755-78420774 | None:intergenic | 45.0% |
! | CGGTTGGTTCCTAACAGATA+AGG | - | chr8.3:78419566-78419585 | None:intergenic | 45.0% |
! | GTTGGTGTATTCTGTTGGCT+AGG | + | chr8.3:78419636-78419655 | MS.gene020228:intron | 45.0% |
!! | AATGGTCCTGCAGCATTGAT+TGG | + | chr8.3:78421435-78421454 | MS.gene020228:CDS | 45.0% |
!! | GCATTGATTGGCCTGTATAG+TGG | + | chr8.3:78421447-78421466 | MS.gene020228:CDS | 45.0% |
!! | GTTTTTGTTTCAGCTGCCTC+TGG | + | chr8.3:78420308-78420327 | MS.gene020228:CDS | 45.0% |
ACCTCTTCAAAGCTGCATCG+AGG | - | chr8.3:78420966-78420985 | None:intergenic | 50.0% | |
AGTATGTCACCGTCACCTTG+GGG | + | chr8.3:78420444-78420463 | MS.gene020228:intron | 50.0% | |
CAAATCAGGCACTTCCCTGA+AGG | + | chr8.3:78421126-78421145 | MS.gene020228:intron | 50.0% | |
CGGGGTTTAAACCCTAGTGA+AGG | + | chr8.3:78420535-78420554 | MS.gene020228:intron | 50.0% | |
GGATTAATGGGAGCTCCTTG+TGG | - | chr8.3:78418966-78418985 | None:intergenic | 50.0% | |
GTCCTCCCTCATATCAGAGA+CGG | + | chr8.3:78421372-78421391 | MS.gene020228:CDS | 50.0% | |
TACAGGCCAATCAATGCTGC+AGG | - | chr8.3:78421444-78421463 | None:intergenic | 50.0% | |
TCCTCCCTCATATCAGAGAC+GGG | + | chr8.3:78421373-78421392 | MS.gene020228:CDS | 50.0% | |
TTCAAAGCTGCATCGAGGTC+AGG | - | chr8.3:78420961-78420980 | None:intergenic | 50.0% | |
! | GATTGAGGGGTGTATGCAAG+AGG | - | chr8.3:78418987-78419006 | None:intergenic | 50.0% |
!! | ACCTCGATGCAGCTTTGAAG+AGG | + | chr8.3:78420962-78420981 | MS.gene020228:CDS | 50.0% |
AAGTTGACCGACTGCACCAG+AGG | - | chr8.3:78420327-78420346 | None:intergenic | 55.0% | |
CTACCCAATCCCCAAGGTGA+CGG | - | chr8.3:78420456-78420475 | None:intergenic | 55.0% | |
GCTCAACTACCCAATCCCCA+AGG | - | chr8.3:78420462-78420481 | None:intergenic | 55.0% | |
GGTGCAGTCGGTCAACTTGT+TGG | + | chr8.3:78420329-78420348 | MS.gene020228:CDS | 55.0% | |
TCACCGTCACCTTGGGGATT+GGG | + | chr8.3:78420450-78420469 | MS.gene020228:intron | 55.0% | |
TCCCGTCTCTGATATGAGGG+AGG | - | chr8.3:78421377-78421396 | None:intergenic | 55.0% | |
CACAAGCAGGTATGCGGCCA+TGG | - | chr8.3:78421218-78421237 | None:intergenic | 60.0% | |
CATGGCCGCATACCTGCTTG+TGG | + | chr8.3:78421216-78421235 | MS.gene020228:CDS | 60.0% | |
GTCACCGTCACCTTGGGGAT+TGG | + | chr8.3:78420449-78420468 | MS.gene020228:intron | 60.0% | |
TCAGCTGCCTCTGGTGCAGT+CGG | + | chr8.3:78420317-78420336 | MS.gene020228:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 78418780 | 78421512 | 78418780 | ID=MS.gene020228 |
chr8.3 | mRNA | 78418780 | 78421512 | 78418780 | ID=MS.gene020228.t1;Parent=MS.gene020228 |
chr8.3 | exon | 78418780 | 78419007 | 78418780 | ID=MS.gene020228.t1.exon1;Parent=MS.gene020228.t1 |
chr8.3 | CDS | 78418780 | 78419007 | 78418780 | ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1 |
chr8.3 | exon | 78419309 | 78419489 | 78419309 | ID=MS.gene020228.t1.exon2;Parent=MS.gene020228.t1 |
chr8.3 | CDS | 78419309 | 78419489 | 78419309 | ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1 |
chr8.3 | exon | 78420243 | 78420409 | 78420243 | ID=MS.gene020228.t1.exon3;Parent=MS.gene020228.t1 |
chr8.3 | CDS | 78420243 | 78420409 | 78420243 | ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1 |
chr8.3 | exon | 78420901 | 78420983 | 78420901 | ID=MS.gene020228.t1.exon4;Parent=MS.gene020228.t1 |
chr8.3 | CDS | 78420901 | 78420983 | 78420901 | ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1 |
chr8.3 | exon | 78421134 | 78421512 | 78421134 | ID=MS.gene020228.t1.exon5;Parent=MS.gene020228.t1 |
chr8.3 | CDS | 78421134 | 78421512 | 78421134 | ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1 |
Gene Sequence |
Protein sequence |