AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020228


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020228.t1 MTR_8g009980 97.681 345 7 1 1 345 1 344 0.0 692
MS.gene020228.t1 MTR_8g010030 82.081 346 59 3 1 345 1 344 0.0 585
MS.gene020228.t1 MTR_8g009820 81.214 346 61 3 1 345 60 402 0.0 568
MS.gene020228.t1 MTR_8g009840 82.059 340 56 4 1 339 1 336 0.0 558
MS.gene020228.t1 MTR_8g009830 80.347 346 63 4 1 345 1 342 0.0 552
MS.gene020228.t1 MTR_8g010020 74.203 345 56 2 1 345 1 312 0.0 522
MS.gene020228.t1 MTR_8g010000 72.254 346 68 4 1 345 1 319 0.0 512
MS.gene020228.t1 MTR_4g082970 68.129 342 108 1 4 345 10 350 8.22e-168 471
MS.gene020228.t1 MTR_7g406860 60.231 347 133 4 1 345 3 346 3.09e-145 414
MS.gene020228.t1 MTR_8g007325 81.448 221 37 3 1 220 1 218 1.49e-124 357
MS.gene020228.t1 MTR_0011s0280 46.398 347 180 3 3 345 2 346 2.02e-110 325
MS.gene020228.t1 MTR_2g088190 41.499 347 191 8 4 342 5 347 5.11e-78 243
MS.gene020228.t1 MTR_2g088220 41.954 348 188 9 4 342 6 348 6.73e-74 232
MS.gene020228.t1 MTR_2g088200 39.692 325 185 7 4 320 5 326 6.47e-68 217
MS.gene020228.t1 MTR_5g095030 53.906 128 59 0 216 343 9 136 1.77e-46 154
MS.gene020228.t1 MTR_4g086410 35.885 209 126 4 140 342 416 622 2.79e-24 104
MS.gene020228.t1 MTR_4g086400 35.885 209 126 5 140 342 276 482 2.93e-24 103
MS.gene020228.t1 MTR_4g086400 35.885 209 126 5 140 342 416 622 4.29e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020228.t1 AT5G16990 69.706 340 103 0 6 345 4 343 4.02e-180 502
MS.gene020228.t1 AT5G16970 69.501 341 103 1 6 345 5 345 2.02e-179 501
MS.gene020228.t1 AT3G03080 71.098 346 96 3 2 345 7 350 2.29e-179 501
MS.gene020228.t1 AT5G17000 69.501 341 103 1 6 345 5 345 1.70e-177 496
MS.gene020228.t1 AT1G26320 68.696 345 103 2 4 345 9 351 3.52e-176 493
MS.gene020228.t1 AT5G37980 68.023 344 104 2 6 345 12 353 2.44e-173 486
MS.gene020228.t1 AT5G16960 67.733 344 110 1 1 343 1 344 9.09e-173 484
MS.gene020228.t1 AT5G16960 67.733 344 110 1 1 343 1 344 9.09e-173 484
MS.gene020228.t1 AT5G37940 67.251 342 110 1 6 345 12 353 2.60e-172 483
MS.gene020228.t1 AT1G26320 67.536 345 102 3 4 345 9 346 1.39e-171 481
MS.gene020228.t1 AT5G38000 66.181 343 110 2 6 344 12 352 2.32e-169 475
MS.gene020228.t1 AT5G38000 64.793 338 110 3 6 336 12 347 9.98e-162 456
MS.gene020228.t1 AT3G59845 63.663 344 119 4 4 343 5 346 4.11e-156 442
MS.gene020228.t1 AT5G38000 62.391 343 104 3 6 344 12 333 9.25e-154 435
MS.gene020228.t1 AT1G65560 58.671 346 137 5 4 345 7 350 5.81e-137 393
MS.gene020228.t1 AT5G16980 57.681 345 106 5 1 345 1 305 3.41e-133 382
MS.gene020228.t1 AT5G16980 75.664 226 55 0 120 345 14 239 3.34e-125 359
MS.gene020228.t1 AT5G16980 75.664 226 55 0 120 345 14 239 3.34e-125 359
MS.gene020228.t1 AT3G59845 70.325 246 70 2 99 343 1 244 6.78e-123 353
MS.gene020228.t1 AT1G65560 61.255 271 102 3 78 345 4 274 2.30e-112 328
MS.gene020228.t1 AT5G17000 69.907 216 64 1 6 220 5 220 1.30e-109 320
MS.gene020228.t1 AT1G49670 31.677 322 195 11 33 342 310 618 7.12e-26 108
MS.gene020228.t1 AT1G49670 29.825 342 198 12 33 342 310 641 6.49e-23 100
MS.gene020228.t1 AT5G37960 50.667 75 37 0 266 340 27 101 4.99e-18 79.0

Find 88 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCCAAGAATTTAGGATTT+AGG 0.194891 8.3:-78421347 None:intergenic
TCACCTAAATCCTAAATTCT+TGG 0.229492 8.3:+78421344 MS.gene020228:CDS
ACCTGAACCTGTAACGAATT+TGG 0.245348 8.3:+78421266 MS.gene020228:CDS
GCCAAATTCGTTACAGGTTC+AGG 0.246307 8.3:-78421267 None:intergenic
ATAAGGAAGGTGATTTAGTT+TGG 0.258281 8.3:+78419361 MS.gene020228:CDS
AGGACAAACTCCAAGAATTT+AGG 0.263093 8.3:-78421354 None:intergenic
ATGTTCATGTCTGATTCTTT+AGG 0.265462 8.3:-78418834 None:intergenic
AAAACAGTCTCTCCTTTCTT+AGG 0.292283 8.3:-78420290 None:intergenic
TTACAGGTAATAGCAGGTTT+TGG 0.310515 8.3:+78419303 MS.gene020228:intron
AGATGTGCCAAATTCGTTAC+AGG 0.319604 8.3:-78421273 None:intergenic
TAAGGAAGGTGATTTAGTTT+GGG 0.330541 8.3:+78419362 MS.gene020228:CDS
AAGTAAATATCAATGCCTTC+AGG 0.336754 8.3:-78421141 None:intergenic
ATCAGGACATCCTGATTATA+AGG 0.342738 8.3:+78419344 MS.gene020228:CDS
GGTGTATGCAAGAGGATTAA+TGG 0.357458 8.3:-78418976 None:intergenic
AAGAATAAATTTGGATTTGA+CGG 0.374698 8.3:+78420913 MS.gene020228:CDS
GTCCCACTTTCCTACTATAC+TGG 0.376088 8.3:+78419459 MS.gene020228:CDS
TAGTTTGGGGATTCTGCAAA+TGG 0.386130 8.3:+78419376 MS.gene020228:CDS
TTCATGAGATTCCTCATGAA+TGG 0.393169 8.3:-78418936 None:intergenic
TTGAAAAGTATTTGAGAAGA+AGG 0.402222 8.3:-78419420 None:intergenic
AAATCACCTTCCTTATAATC+AGG 0.409142 8.3:-78419354 None:intergenic
AAGCTTTAACATACAGATTG+AGG 0.419166 8.3:-78418999 None:intergenic
TCCTACTATACTGGAATTCT+CGG 0.425528 8.3:+78419468 MS.gene020228:CDS
TTCAAAGCTGCATCGAGGTC+AGG 0.432481 8.3:-78420958 None:intergenic
GGTGCAGTCGGTCAACTTGT+TGG 0.439651 8.3:+78420329 MS.gene020228:CDS
CCAGCATAAGCAGTTATTCC+TGG 0.442475 8.3:-78420248 None:intergenic
GTGTCTAAAGTCCTTGAATC+AGG 0.445040 8.3:+78419327 MS.gene020228:CDS
GTGTATGCAAGAGGATTAAT+GGG 0.451553 8.3:-78418975 None:intergenic
CTGACAGGATGTTATGTTGT+AGG 0.455877 8.3:+78420365 MS.gene020228:CDS
TGTTATGTTGTAGGAAGTGC+TGG 0.456488 8.3:+78420374 MS.gene020228:CDS
AATCAGGATGTCCTGATTCA+AGG 0.467897 8.3:-78419338 None:intergenic
AATGGTCCTGCAGCATTGAT+TGG 0.469066 8.3:+78421435 MS.gene020228:CDS
GATATTTACTTTGAGAATGT+TGG 0.469382 8.3:+78421153 MS.gene020228:CDS
CAACATTGCGACCACTATAC+AGG 0.474009 8.3:-78421458 None:intergenic
TCTTTGAACACAGGTATGCC+AGG 0.489073 8.3:+78420230 MS.gene020228:intron
CACAAGCAGGTATGCGGCCA+TGG 0.491073 8.3:-78421215 None:intergenic
CAGTAATTACAGGTAATAGC+AGG 0.502936 8.3:+78419297 MS.gene020228:intron
ACCGAGAATTCCAGTATAGT+AGG 0.503877 8.3:-78419469 None:intergenic
TGAAAAGTATTTGAGAAGAA+GGG 0.510299 8.3:-78419419 None:intergenic
ACCTCGATGCAGCTTTGAAG+AGG 0.517469 8.3:+78420962 MS.gene020228:CDS
CCAGGAATAACTGCTTATGC+TGG 0.521588 8.3:+78420248 MS.gene020228:CDS
ATTTACTTTGAGAATGTTGG+AGG 0.524827 8.3:+78421156 MS.gene020228:CDS
GGTCAATTCGCTAAACTGAC+AGG 0.527324 8.3:+78420350 MS.gene020228:CDS
ATTCCAGTATAGTAGGAAAG+TGG 0.530249 8.3:-78419462 None:intergenic
CAAATGGGAAGAGTACAGTT+TGG 0.532103 8.3:+78419392 MS.gene020228:CDS
ATAACTGAGGGTCTTGAGAA+TGG 0.532568 8.3:+78421417 MS.gene020228:CDS
AGCTTTAACATACAGATTGA+GGG 0.532915 8.3:-78418998 None:intergenic
ATACTGAAGGACTATGTGTC+TGG 0.534384 8.3:+78418807 MS.gene020228:CDS
AGTAAATATCAATGCCTTCA+GGG 0.538437 8.3:-78421140 None:intergenic
TATGCTGGTTTCTTTGAACT+AGG 0.545755 8.3:+78420263 MS.gene020228:CDS
TACAGGCCAATCAATGCTGC+AGG 0.549132 8.3:-78421441 None:intergenic
TCAGCTGCCTCTGGTGCAGT+CGG 0.551705 8.3:+78420317 MS.gene020228:CDS
AATAAATTTGGATTTGACGG+AGG 0.551855 8.3:+78420916 MS.gene020228:CDS
TCCTCCCTCATATCAGAGAC+GGG 0.552336 8.3:+78421373 MS.gene020228:CDS
AAGGAAGGTGATTTAGTTTG+GGG 0.554385 8.3:+78419363 MS.gene020228:CDS
GTCCTCCCTCATATCAGAGA+CGG 0.557651 8.3:+78421372 MS.gene020228:CDS
AAGTGCTGGAAGTAAAGAGA+AGG 0.561804 8.3:+78420388 MS.gene020228:CDS
GAACTAGGCAGTCCTAAGAA+AGG 0.566199 8.3:+78420278 MS.gene020228:CDS
CATATATAAGCGGATTCGAA+TGG 0.569235 8.3:+78421296 MS.gene020228:CDS
GCATTGATTGGCCTGTATAG+TGG 0.570454 8.3:+78421447 MS.gene020228:CDS
CTTCTGAATATGAGAGTCCA+TGG 0.570985 8.3:+78421198 MS.gene020228:CDS
CTGTATAGTGGTCGCAATGT+TGG 0.571188 8.3:+78421459 MS.gene020228:CDS
TATAAGCGGATTCGAATGGA+AGG 0.574885 8.3:+78421300 MS.gene020228:CDS
GGACATCCTGATTATAAGGA+AGG 0.575310 8.3:+78419348 MS.gene020228:CDS
AGTTTGGGGATTCTGCAAAT+GGG 0.577655 8.3:+78419377 MS.gene020228:CDS
TGACGGAGGTTTCAACTACA+AGG 0.579141 8.3:+78420930 MS.gene020228:CDS
TTCCAGTATAGTAGGAAAGT+GGG 0.584748 8.3:-78419461 None:intergenic
TGTGAGATCATTCCACAAGC+AGG 0.587370 8.3:-78421228 None:intergenic
CAAATCAGGCACTTCCCTGA+AGG 0.588407 8.3:+78421126 MS.gene020228:intron
CATGGCCGCATACCTGCTTG+TGG 0.591190 8.3:+78421216 MS.gene020228:CDS
ATGGGAAGAGTACAGTTTGG+TGG 0.596340 8.3:+78419395 MS.gene020228:CDS
GGATTAATGGGAGCTCCTTG+TGG 0.608435 8.3:-78418963 None:intergenic
TGGCACATCTCATATATAAG+CGG 0.622685 8.3:+78421286 MS.gene020228:CDS
GATTGAGGGGTGTATGCAAG+AGG 0.633379 8.3:-78418984 None:intergenic
TCCCGTCTCTGATATGAGGG+AGG 0.638712 8.3:-78421374 None:intergenic
GCTTTAACATACAGATTGAG+GGG 0.639033 8.3:-78418997 None:intergenic
AGAATATCATTGGAACCTTG+TGG 0.639489 8.3:-78418885 None:intergenic
ATTACTCTTAAGCTTCCACA+AGG 0.646103 8.3:+78418870 MS.gene020228:CDS
TGTCTTGTGATCCATTCATG+AGG 0.654206 8.3:+78418925 MS.gene020228:CDS
TCATTCCACAAGCAGGTATG+CGG 0.655597 8.3:-78421221 None:intergenic
TACCAAACATGGCACAAGTG+AGG 0.656499 8.3:+78418772 None:intergenic
AAGTTGACCGACTGCACCAG+AGG 0.660264 8.3:-78420324 None:intergenic
ATAAGCGGATTCGAATGGAA+GGG 0.669316 8.3:+78421301 MS.gene020228:CDS
GAACAAGCAAGTGATACTGA+AGG 0.679731 8.3:+78418794 MS.gene020228:CDS
ACCTCTTCAAAGCTGCATCG+AGG 0.685554 8.3:-78420963 None:intergenic
TCGCAATGTTGGTAAACAAG+TGG 0.707437 8.3:+78421470 MS.gene020228:CDS
AATCTCATGAACAAACCACA+AGG 0.737957 8.3:+78418948 MS.gene020228:CDS
TATGTTGAAGACATAACTGA+GGG 0.741574 8.3:+78421405 MS.gene020228:CDS
GTATGTTGAAGACATAACTG+AGG 0.767481 8.3:+78421404 MS.gene020228:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATTATATATACAAATA+AGG - chr8.3:78420637-78420656 None:intergenic 10.0%
!! CATAAGTTTATAAATTATAA+TGG - chr8.3:78421051-78421070 None:intergenic 10.0%
!!! TTTAATTTTATTTTTTGGAT+AGG - chr8.3:78420599-78420618 None:intergenic 10.0%
!!! TTTCAATTTATATTGATTTA+TGG + chr8.3:78419505-78419524 MS.gene020228:intron 10.0%
!!! AACTACTGAATTTTATTATT+CGG - chr8.3:78421082-78421101 None:intergenic 15.0%
!!! TATAATTTTTCAGTAATTAC+AGG + chr8.3:78419287-78419306 MS.gene020228:intron 15.0%
!! AAAATTTGCATAATGAATTG+TGG + chr8.3:78420776-78420795 MS.gene020228:intron 20.0%
!! AAATTTGACATATACTCAAA+AGG - chr8.3:78419036-78419055 None:intergenic 20.0%
!! AAGAATAAATTTGGATTTGA+CGG + chr8.3:78420913-78420932 MS.gene020228:CDS 20.0%
!! AAGGAGTTATAAAGTTATAA+AGG + chr8.3:78420510-78420529 MS.gene020228:intron 20.0%
!! AATGAGAACATTAAAAACTT+AGG - chr8.3:78420111-78420130 None:intergenic 20.0%
!! AATTTGACATATACTCAAAA+GGG - chr8.3:78419035-78419054 None:intergenic 20.0%
!! AGATAAGAAAAGATACTTTA+AGG - chr8.3:78419062-78419081 None:intergenic 20.0%
!! CAATTATGAAAAGAAGAAAA+TGG - chr8.3:78420013-78420032 None:intergenic 20.0%
!! CAGTAAAAAAAAACTATTTC+AGG - chr8.3:78420826-78420845 None:intergenic 20.0%
!! TATATATACAAATAAGGAAC+AGG - chr8.3:78420631-78420650 None:intergenic 20.0%
!! TATATCGAAATATACAAATC+AGG + chr8.3:78421112-78421131 MS.gene020228:intron 20.0%
!! TATCACTATCATTAAACAAT+AGG + chr8.3:78419891-78419910 MS.gene020228:intron 20.0%
!!! AATGTATGTATACAGTTTTA+TGG + chr8.3:78420650-78420669 MS.gene020228:intron 20.0%
!!! AATTGAAGGTTATTTAGAAT+TGG + chr8.3:78420028-78420047 MS.gene020228:intron 20.0%
!!! ATTTTTTAGCAGAATATCAT+TGG - chr8.3:78418898-78418917 None:intergenic 20.0%
!!! GATCTTTTGAAGAATAAATT+TGG + chr8.3:78420904-78420923 MS.gene020228:CDS 20.0%
!!! GGCGATTTAATTTTATTTTT+TGG - chr8.3:78420604-78420623 None:intergenic 20.0%
!!! TATTGTTTAATGATAGTGAT+AGG - chr8.3:78419892-78419911 None:intergenic 20.0%
!!! TTTCTTCTTTTCATAATTGA+AGG + chr8.3:78420014-78420033 MS.gene020228:intron 20.0%
!!! TTTTGTTTAATGAGTAAGTT+AGG + chr8.3:78419607-78419626 MS.gene020228:intron 20.0%
! ATAAAGGTTAAATAAGTCGA+AGG + chr8.3:78420491-78420510 MS.gene020228:intron 25.0%
! CATTAAACAATAGGTATAGT+TGG + chr8.3:78419900-78419919 MS.gene020228:intron 25.0%
! GAAAAGAAGAAAATGGAAAA+GGG - chr8.3:78420006-78420025 None:intergenic 25.0%
! GTTATAAAGTTATAAAGGAC+CGG + chr8.3:78420515-78420534 MS.gene020228:intron 25.0%
! TGAAAAGAAGAAAATGGAAA+AGG - chr8.3:78420007-78420026 None:intergenic 25.0%
! TTATAAAGTTATAAAGGACC+GGG + chr8.3:78420516-78420535 MS.gene020228:intron 25.0%
!! AAAAAAACTATTTCAGGTCT+TGG - chr8.3:78420820-78420839 None:intergenic 25.0%
!! GATATTTACTTTGAGAATGT+TGG + chr8.3:78421153-78421172 MS.gene020228:CDS 25.0%
!!! ATGGTTCTAATGTACAAATT+TGG + chr8.3:78420669-78420688 MS.gene020228:intron 25.0%
!!! ATGTTTTTTTTACAATCAGG+TGG + chr8.3:78420882-78420901 MS.gene020228:intron 25.0%
!!! TGAAAAGTATTTGAGAAGAA+GGG - chr8.3:78419422-78419441 None:intergenic 25.0%
!!! TGCATGTTTTTTTTACAATC+AGG + chr8.3:78420879-78420898 MS.gene020228:intron 25.0%
!!! TTGAAAAGTATTTGAGAAGA+AGG - chr8.3:78419423-78419442 None:intergenic 25.0%
AAATCACCTTCCTTATAATC+AGG - chr8.3:78419357-78419376 None:intergenic 30.0%
AAGTAAATATCAATGCCTTC+AGG - chr8.3:78421144-78421163 None:intergenic 30.0%
AATAAATTTGGATTTGACGG+AGG + chr8.3:78420916-78420935 MS.gene020228:CDS 30.0%
ACATGCATTCAAACAAAAGA+AGG - chr8.3:78420866-78420885 None:intergenic 30.0%
AGTAAATATCAATGCCTTCA+GGG - chr8.3:78421143-78421162 None:intergenic 30.0%
ATAAGGAAGGTGATTTAGTT+TGG + chr8.3:78419361-78419380 MS.gene020228:CDS 30.0%
ATGTATCTTCCATGACAAAA+TGG - chr8.3:78419937-78419956 None:intergenic 30.0%
ATGTTCATGTCTGATTCTTT+AGG - chr8.3:78418837-78418856 None:intergenic 30.0%
ATTCAAACAAAAGAAGGACT+AGG - chr8.3:78420860-78420879 None:intergenic 30.0%
CAAACACTAATAATCAGCTA+CGG - chr8.3:78419586-78419605 None:intergenic 30.0%
CAGTATCAATGTAGAGAAAA+TGG - chr8.3:78419849-78419868 None:intergenic 30.0%
TACAAATAAGGAACAGGTTA+TGG - chr8.3:78420625-78420644 None:intergenic 30.0%
TATAAAGTTATAAAGGACCG+GGG + chr8.3:78420517-78420536 MS.gene020228:intron 30.0%
TATGTTGAAGACATAACTGA+GGG + chr8.3:78421405-78421424 MS.gene020228:CDS 30.0%
TCACCTAAATCCTAAATTCT+TGG + chr8.3:78421344-78421363 MS.gene020228:CDS 30.0%
TCGTATCAATAAAACTTGCA+GGG + chr8.3:78419812-78419831 MS.gene020228:intron 30.0%
TTCGTATCAATAAAACTTGC+AGG + chr8.3:78419811-78419830 MS.gene020228:intron 30.0%
! AAGCTTTAACATACAGATTG+AGG - chr8.3:78419002-78419021 None:intergenic 30.0%
! ACTCCAAGAATTTAGGATTT+AGG - chr8.3:78421350-78421369 None:intergenic 30.0%
! ACTTTTCAAAATTGAGCACA+CGG + chr8.3:78419434-78419453 MS.gene020228:CDS 30.0%
! AGCTTTAACATACAGATTGA+GGG - chr8.3:78419001-78419020 None:intergenic 30.0%
! ATTTACTTTGAGAATGTTGG+AGG + chr8.3:78421156-78421175 MS.gene020228:CDS 30.0%
! GTTAAAAAAGCACAACAGAA+TGG - chr8.3:78420196-78420215 None:intergenic 30.0%
! GTTGAGCTAGTTTGATATAA+AGG + chr8.3:78420475-78420494 MS.gene020228:intron 30.0%
! TAAGGAAGGTGATTTAGTTT+GGG + chr8.3:78419362-78419381 MS.gene020228:CDS 30.0%
! TACAATTTTCTCCTTCACTA+GGG - chr8.3:78420549-78420568 None:intergenic 30.0%
! TTACAATTTTCTCCTTCACT+AGG - chr8.3:78420550-78420569 None:intergenic 30.0%
! TTTTTCCCTCCATTTTCTTT+TGG - chr8.3:78420760-78420779 None:intergenic 30.0%
!! AAATGGAAAAGGGTTGATAA+AGG - chr8.3:78419996-78420015 None:intergenic 30.0%
AAAACAGTCTCTCCTTTCTT+AGG - chr8.3:78420293-78420312 None:intergenic 35.0%
AATCTCATGAACAAACCACA+AGG + chr8.3:78418948-78418967 MS.gene020228:CDS 35.0%
AGAATATCATTGGAACCTTG+TGG - chr8.3:78418888-78418907 None:intergenic 35.0%
AGGACAAACTCCAAGAATTT+AGG - chr8.3:78421357-78421376 None:intergenic 35.0%
ATCAGGACATCCTGATTATA+AGG + chr8.3:78419344-78419363 MS.gene020228:CDS 35.0%
ATTACTCTTAAGCTTCCACA+AGG + chr8.3:78418870-78418889 MS.gene020228:CDS 35.0%
ATTCCAGTATAGTAGGAAAG+TGG - chr8.3:78419465-78419484 None:intergenic 35.0%
CAGTAATTACAGGTAATAGC+AGG + chr8.3:78419297-78419316 MS.gene020228:intron 35.0%
CAGTCCTATTTATACTGCAT+AGG - chr8.3:78419690-78419709 None:intergenic 35.0%
GCTTTAACATACAGATTGAG+GGG - chr8.3:78419000-78419019 None:intergenic 35.0%
GTATGTTGAAGACATAACTG+AGG + chr8.3:78421404-78421423 MS.gene020228:CDS 35.0%
GTGTATGCAAGAGGATTAAT+GGG - chr8.3:78418978-78418997 None:intergenic 35.0%
TCCTACTATACTGGAATTCT+CGG + chr8.3:78419468-78419487 MS.gene020228:CDS 35.0%
TCCTATTTATACTGCATAGG+AGG - chr8.3:78419687-78419706 None:intergenic 35.0%
TCCTCCTATGCAGTATAAAT+AGG + chr8.3:78419683-78419702 MS.gene020228:intron 35.0%
TGGCACATCTCATATATAAG+CGG + chr8.3:78421286-78421305 MS.gene020228:CDS 35.0%
TTACCCTTGCCAAAAGAAAA+TGG + chr8.3:78420748-78420767 MS.gene020228:intron 35.0%
TTCATGAGATTCCTCATGAA+TGG - chr8.3:78418939-78418958 None:intergenic 35.0%
TTCCAGTATAGTAGGAAAGT+GGG - chr8.3:78419464-78419483 None:intergenic 35.0%
TTGATTTCAGTCTCATATGC+AGG + chr8.3:78419540-78419559 MS.gene020228:intron 35.0%
! ATTTTCTTTTGGCAAGGGTA+AGG - chr8.3:78420749-78420768 None:intergenic 35.0%
! CATATATAAGCGGATTCGAA+TGG + chr8.3:78421296-78421315 MS.gene020228:CDS 35.0%
! TACAGGTAATAGCAGGTTTT+GGG + chr8.3:78419304-78419323 MS.gene020228:intron 35.0%
! TTACAGGTAATAGCAGGTTT+TGG + chr8.3:78419303-78419322 MS.gene020228:intron 35.0%
! TTGCGTTTTTCTTTGAACAC+AGG + chr8.3:78420221-78420240 MS.gene020228:intron 35.0%
! TTTTCTTTTGGCAAGGGTAA+GGG - chr8.3:78420748-78420767 None:intergenic 35.0%
!! AAGGAAGGTGATTTAGTTTG+GGG + chr8.3:78419363-78419382 MS.gene020228:CDS 35.0%
!! AATTTAGTTTGTGCTGTGCA+TGG + chr8.3:78419084-78419103 MS.gene020228:intron 35.0%
!! TATGCTGGTTTCTTTGAACT+AGG + chr8.3:78420263-78420282 MS.gene020228:CDS 35.0%
AAACTAGCTCCTTCGTGTAT+TGG + chr8.3:78419783-78419802 MS.gene020228:intron 40.0%
AATCAGGATGTCCTGATTCA+AGG - chr8.3:78419341-78419360 None:intergenic 40.0%
ACCGAGAATTCCAGTATAGT+AGG - chr8.3:78419472-78419491 None:intergenic 40.0%
ACCTGAACCTGTAACGAATT+TGG + chr8.3:78421266-78421285 MS.gene020228:CDS 40.0%
AGAGAAGTTATGCAGAGATG+TGG - chr8.3:78420084-78420103 None:intergenic 40.0%
AGATGTGCCAAATTCGTTAC+AGG - chr8.3:78421276-78421295 None:intergenic 40.0%
AGTTTGGGGATTCTGCAAAT+GGG + chr8.3:78419377-78419396 MS.gene020228:CDS 40.0%
ATAACTGAGGGTCTTGAGAA+TGG + chr8.3:78421417-78421436 MS.gene020228:CDS 40.0%
ATACTGAAGGACTATGTGTC+TGG + chr8.3:78418807-78418826 MS.gene020228:CDS 40.0%
ATAGGTATAGTTGGCTGTAG+AGG + chr8.3:78419909-78419928 MS.gene020228:intron 40.0%
CACTAATAATCAGCTACGGT+TGG - chr8.3:78419582-78419601 None:intergenic 40.0%
CCTTGCCAAAAGAAAATGGA+GGG + chr8.3:78420752-78420771 MS.gene020228:intron 40.0%
CGAAGAAAACCAATACACGA+AGG - chr8.3:78419795-78419814 None:intergenic 40.0%
CTGACAGGATGTTATGTTGT+AGG + chr8.3:78420365-78420384 MS.gene020228:CDS 40.0%
CTTCTGAATATGAGAGTCCA+TGG + chr8.3:78421198-78421217 MS.gene020228:CDS 40.0%
GAACAAGCAAGTGATACTGA+AGG + chr8.3:78418794-78418813 MS.gene020228:CDS 40.0%
GGACATCCTGATTATAAGGA+AGG + chr8.3:78419348-78419367 MS.gene020228:CDS 40.0%
GGTGTATGCAAGAGGATTAA+TGG - chr8.3:78418979-78418998 None:intergenic 40.0%
GTATTCTGCACTGAACAGTT+TGG + chr8.3:78420988-78421007 MS.gene020228:intron 40.0%
TAGCTGTTGGTGTATTCTGT+TGG + chr8.3:78419631-78419650 MS.gene020228:intron 40.0%
TAGTTTGGGGATTCTGCAAA+TGG + chr8.3:78419376-78419395 MS.gene020228:CDS 40.0%
TGTCTTGTGATCCATTCATG+AGG + chr8.3:78418925-78418944 MS.gene020228:CDS 40.0%
! ACAGGTAATAGCAGGTTTTG+GGG + chr8.3:78419305-78419324 MS.gene020228:intron 40.0%
! ATAAGCGGATTCGAATGGAA+GGG + chr8.3:78421301-78421320 MS.gene020228:CDS 40.0%
! ATATGCAGGCCTTATCTGTT+AGG + chr8.3:78419554-78419573 MS.gene020228:intron 40.0%
! ATTTTCCCGTCTCTGATATG+AGG - chr8.3:78421381-78421400 None:intergenic 40.0%
! CAAATGGGAAGAGTACAGTT+TGG + chr8.3:78419392-78419411 MS.gene020228:CDS 40.0%
! CCTCCATTTTCTTTTGGCAA+GGG - chr8.3:78420754-78420773 None:intergenic 40.0%
! GAGTAAGTTAGGTTAGCTGT+TGG + chr8.3:78419618-78419637 MS.gene020228:intron 40.0%
! GTAGAGGATCCATTTTGTCA+TGG + chr8.3:78419925-78419944 MS.gene020228:intron 40.0%
! GTGTCTAAAGTCCTTGAATC+AGG + chr8.3:78419327-78419346 MS.gene020228:CDS 40.0%
! TATAAGCGGATTCGAATGGA+AGG + chr8.3:78421300-78421319 MS.gene020228:CDS 40.0%
! TCGCAATGTTGGTAAACAAG+TGG + chr8.3:78421470-78421489 MS.gene020228:CDS 40.0%
! TGTTATGTTGTAGGAAGTGC+TGG + chr8.3:78420374-78420393 MS.gene020228:CDS 40.0%
! TTTTCCCGTCTCTGATATGA+GGG - chr8.3:78421380-78421399 None:intergenic 40.0%
!! AAGTGCTGGAAGTAAAGAGA+AGG + chr8.3:78420388-78420407 MS.gene020228:CDS 40.0%
!! AGGGTTGATAAAGGCTAAAC+AGG - chr8.3:78419987-78420006 None:intergenic 40.0%
!! GACAGTCTTGTTGCAGAATT+AGG + chr8.3:78419709-78419728 MS.gene020228:intron 40.0%
CAACATTGCGACCACTATAC+AGG - chr8.3:78421461-78421480 None:intergenic 45.0%
CCAGCATAAGCAGTTATTCC+TGG - chr8.3:78420251-78420270 None:intergenic 45.0%
CCAGGAATAACTGCTTATGC+TGG + chr8.3:78420248-78420267 MS.gene020228:CDS 45.0%
CCCTTGCCAAAAGAAAATGG+AGG + chr8.3:78420751-78420770 MS.gene020228:intron 45.0%
CTGTATAGTGGTCGCAATGT+TGG + chr8.3:78421459-78421478 MS.gene020228:CDS 45.0%
CTTCACTAGGGTTTAAACCC+CGG - chr8.3:78420537-78420556 None:intergenic 45.0%
GAACTAGGCAGTCCTAAGAA+AGG + chr8.3:78420278-78420297 MS.gene020228:CDS 45.0%
GAGTATGCTCTAGTGAGAAG+AGG + chr8.3:78419760-78419779 MS.gene020228:intron 45.0%
GCCAAATTCGTTACAGGTTC+AGG - chr8.3:78421270-78421289 None:intergenic 45.0%
GGTCAATTCGCTAAACTGAC+AGG + chr8.3:78420350-78420369 MS.gene020228:CDS 45.0%
GTCCCACTTTCCTACTATAC+TGG + chr8.3:78419459-78419478 MS.gene020228:CDS 45.0%
TAGTATGTCACCGTCACCTT+GGG + chr8.3:78420443-78420462 MS.gene020228:intron 45.0%
TCATTCCACAAGCAGGTATG+CGG - chr8.3:78421224-78421243 None:intergenic 45.0%
TCTTTGAACACAGGTATGCC+AGG + chr8.3:78420230-78420249 MS.gene020228:intron 45.0%
TGACGGAGGTTTCAACTACA+AGG + chr8.3:78420930-78420949 MS.gene020228:CDS 45.0%
TGTGAGATCATTCCACAAGC+AGG - chr8.3:78421231-78421250 None:intergenic 45.0%
TTAGTATGTCACCGTCACCT+TGG + chr8.3:78420442-78420461 MS.gene020228:intron 45.0%
! AAGGTGACGGTGACATACTA+AGG - chr8.3:78420443-78420462 None:intergenic 45.0%
! ATGGGAAGAGTACAGTTTGG+TGG + chr8.3:78419395-78419414 MS.gene020228:CDS 45.0%
! CCCTCCATTTTCTTTTGGCA+AGG - chr8.3:78420755-78420774 None:intergenic 45.0%
! CGGTTGGTTCCTAACAGATA+AGG - chr8.3:78419566-78419585 None:intergenic 45.0%
! GTTGGTGTATTCTGTTGGCT+AGG + chr8.3:78419636-78419655 MS.gene020228:intron 45.0%
!! AATGGTCCTGCAGCATTGAT+TGG + chr8.3:78421435-78421454 MS.gene020228:CDS 45.0%
!! GCATTGATTGGCCTGTATAG+TGG + chr8.3:78421447-78421466 MS.gene020228:CDS 45.0%
!! GTTTTTGTTTCAGCTGCCTC+TGG + chr8.3:78420308-78420327 MS.gene020228:CDS 45.0%
ACCTCTTCAAAGCTGCATCG+AGG - chr8.3:78420966-78420985 None:intergenic 50.0%
AGTATGTCACCGTCACCTTG+GGG + chr8.3:78420444-78420463 MS.gene020228:intron 50.0%
CAAATCAGGCACTTCCCTGA+AGG + chr8.3:78421126-78421145 MS.gene020228:intron 50.0%
CGGGGTTTAAACCCTAGTGA+AGG + chr8.3:78420535-78420554 MS.gene020228:intron 50.0%
GGATTAATGGGAGCTCCTTG+TGG - chr8.3:78418966-78418985 None:intergenic 50.0%
GTCCTCCCTCATATCAGAGA+CGG + chr8.3:78421372-78421391 MS.gene020228:CDS 50.0%
TACAGGCCAATCAATGCTGC+AGG - chr8.3:78421444-78421463 None:intergenic 50.0%
TCCTCCCTCATATCAGAGAC+GGG + chr8.3:78421373-78421392 MS.gene020228:CDS 50.0%
TTCAAAGCTGCATCGAGGTC+AGG - chr8.3:78420961-78420980 None:intergenic 50.0%
! GATTGAGGGGTGTATGCAAG+AGG - chr8.3:78418987-78419006 None:intergenic 50.0%
!! ACCTCGATGCAGCTTTGAAG+AGG + chr8.3:78420962-78420981 MS.gene020228:CDS 50.0%
AAGTTGACCGACTGCACCAG+AGG - chr8.3:78420327-78420346 None:intergenic 55.0%
CTACCCAATCCCCAAGGTGA+CGG - chr8.3:78420456-78420475 None:intergenic 55.0%
GCTCAACTACCCAATCCCCA+AGG - chr8.3:78420462-78420481 None:intergenic 55.0%
GGTGCAGTCGGTCAACTTGT+TGG + chr8.3:78420329-78420348 MS.gene020228:CDS 55.0%
TCACCGTCACCTTGGGGATT+GGG + chr8.3:78420450-78420469 MS.gene020228:intron 55.0%
TCCCGTCTCTGATATGAGGG+AGG - chr8.3:78421377-78421396 None:intergenic 55.0%
CACAAGCAGGTATGCGGCCA+TGG - chr8.3:78421218-78421237 None:intergenic 60.0%
CATGGCCGCATACCTGCTTG+TGG + chr8.3:78421216-78421235 MS.gene020228:CDS 60.0%
GTCACCGTCACCTTGGGGAT+TGG + chr8.3:78420449-78420468 MS.gene020228:intron 60.0%
TCAGCTGCCTCTGGTGCAGT+CGG + chr8.3:78420317-78420336 MS.gene020228:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 78418780 78421512 78418780 ID=MS.gene020228
chr8.3 mRNA 78418780 78421512 78418780 ID=MS.gene020228.t1;Parent=MS.gene020228
chr8.3 exon 78418780 78419007 78418780 ID=MS.gene020228.t1.exon1;Parent=MS.gene020228.t1
chr8.3 CDS 78418780 78419007 78418780 ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1
chr8.3 exon 78419309 78419489 78419309 ID=MS.gene020228.t1.exon2;Parent=MS.gene020228.t1
chr8.3 CDS 78419309 78419489 78419309 ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1
chr8.3 exon 78420243 78420409 78420243 ID=MS.gene020228.t1.exon3;Parent=MS.gene020228.t1
chr8.3 CDS 78420243 78420409 78420243 ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1
chr8.3 exon 78420901 78420983 78420901 ID=MS.gene020228.t1.exon4;Parent=MS.gene020228.t1
chr8.3 CDS 78420901 78420983 78420901 ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1
chr8.3 exon 78421134 78421512 78421134 ID=MS.gene020228.t1.exon5;Parent=MS.gene020228.t1
chr8.3 CDS 78421134 78421512 78421134 ID=cds.MS.gene020228.t1;Parent=MS.gene020228.t1
Gene Sequence

>MS.gene020228

ATGGCACAAGTGAGGAACAAGCAAGTGATACTGAAGGACTATGTGTCTGGTTTTCCTAAAGAATCAGACATGAACATTGTTGATAGTACAATTACTCTTAAGCTTCCACAAGGTTCCAATGATATTCTGCTAAAAAATCTATACTTGTCTTGTGATCCATTCATGAGGAATCTCATGAACAAACCACAAGGAGCTCCCATTAATCCTCTTGCATACACCCCTCAATCTGTATGTTAAAGCTTTTGTGAATAGCCCTTTTGAGTATATGTCAAATTTGATCCTTAAAGTATCTTTTCTTATCTGTAATTTAGTTTGTGCTGTGCATGGATCAACATGTTAGTAAGTTTACAATTTAGATATGATAAATTTCTTAGCAAATTAAAGAAATTAGAATTTTGCAGTTTATGTGATTAGCTTTTCAGTTTTATTCTTAAATCAAGATTGAAACTAATCAAAGAATAATCTACAAAGTTGAGTTTGAAACAATATTTTGTTTATGTAGCTTCTTATAATTTTTCAGTAATTACAGGTAATAGCAGGTTTTGGGGTGTCTAAAGTCCTTGAATCAGGACATCCTGATTATAAGGAAGGTGATTTAGTTTGGGGATTCTGCAAATGGGAAGAGTACAGTTTGGTGGTCCCTTCTTCTCAAATACTTTTCAAAATTGAGCACACGGATGTCCCACTTTCCTACTATACTGGAATTCTCGGTATGTATTCAACAATTTCAATTTATATTGATTTATGGTAAAGAATGCACTTGATTTCAGTCTCATATGCAGGCCTTATCTGTTAGGAACCAACCGTAGCTGATTATTAGTGTTTGTTTTTGTTTAATGAGTAAGTTAGGTTAGCTGTTGGTGTATTCTGTTGGCTAGGTTTGCTGTTAGTGTAATCTGTTAGTCCTCCTATGCAGTATAAATAGGACTGACAGTCTTGTTGCAGAATTAGGAAATCATTTACTTCAAGAGTGTAAACTAGAGTATGCTCTAGTGAGAAGAGGAAACTAGCTCCTTCGTGTATTGGTTTTCTTCGTATCAATAAAACTTGCAGGGAAGAATAAACTCCATTTTCTCTACATTGATACTGCAAGAACTAATCAATTCGTACCTATCACTATCATTAAACAATAGGTATAGTTGGCTGTAGAGGATCCATTTTGTCATGGAAGATACATATTGTGTGATTGTTGTATAGTTGTCTGCCTGTTTAGCCTTTATCAACCCTTTTCCATTTTCTTCTTTTCATAATTGAAGGTTATTTAGAATTGGTTTCTCATTGCTTTTAGACATCTGTTACAGCCACATCTCTGCATAACTTCTCTCTAGCCTAAGTTTTTAATGTTCTCATTTATGTTTTATTTACAAATGATATTGTACAACATATGTCATTGATGACTCGCATATTTTTCTGCCATTCTGTTGTGCTTTTTTAACATATGTTGCGTTTTTCTTTGAACACAGGTATGCCAGGAATAACTGCTTATGCTGGTTTCTTTGAACTAGGCAGTCCTAAGAAAGGAGAGACTGTTTTTGTTTCAGCTGCCTCTGGTGCAGTCGGTCAACTTGTTGGTCAATTCGCTAAACTGACAGGATGTTATGTTGTAGGAAGTGCTGGAAGTAAAGAGAAGGTATTTTTGTAATTGCTTAAGTTTTATGTTCCTTAGTATGTCACCGTCACCTTGGGGATTGGGTAGTTGAGCTAGTTTGATATAAAGGTTAAATAAGTCGAAGGAGTTATAAAGTTATAAAGGACCGGGGTTTAAACCCTAGTGAAGGAGAAAATTGTAAGATAACAACTAATATACTATCATTTGCCTATCCAAAAAATAAAATTAAATCGCCATAACCTGTTCCTTATTTGTATATATAATGTATGTATACAGTTTTATGGTTCTAATGTACAAATTTGGTTATAACGTGTACTTTATTTTATGTATCTGTATTTATACTACAATATTCAACTCCCTTACCCTTGCCAAAAGAAAATGGAGGGAAAAATTTGCATAATGAATTGTGGCATAGATTAAAAATTGTACCAAGACCTGAAATAGTTTTTTTTTACTGTGTTAAAAAAACCTAGTCCTTCTTTTGTTTGAATGCATGTTTTTTTTACAATCAGGTGGATCTTTTGAAGAATAAATTTGGATTTGACGGAGGTTTCAACTACAAGGAAGAGCCTGACCTCGATGCAGCTTTGAAGAGGTTTGTATTCTGCACTGAACAGTTTGGTCATACAAAAAGATTTAGATGTTACTTCGTTGCGTAGCCATTATAATTTATAAACTTATGTTACAGTGCCGAATAATAAAATTCAGTAGTTGCTAATGTATTATATCGAAATATACAAATCAGGCACTTCCCTGAAGGCATTGATATTTACTTTGAGAATGTTGGAGGAAAGACACTTGATGCAGTACTTCTGAATATGAGAGTCCATGGCCGCATACCTGCTTGTGGAATGATCTCACAGTACAATCTTACGCAACCTGAACCTGTAACGAATTTGGCACATCTCATATATAAGCGGATTCGAATGGAAGGGTTTAACAGTGCTGATTTCTTTCACCTAAATCCTAAATTCTTGGAGTTTGTCCTCCCTCATATCAGAGACGGGAAAATTGTGTATGTTGAAGACATAACTGAGGGTCTTGAGAATGGTCCTGCAGCATTGATTGGCCTGTATAGTGGTCGCAATGTTGGTAAACAAGTGGTTGTCGTTGCTCGTGAATAG

Protein sequence

>MS.gene020228.t1

MAQVRNKQVILKDYVSGFPKESDMNIVDSTITLKLPQGSNDILLKNLYLSCDPFMRNLMNKPQGAPINPLAYTPQSVIAGFGVSKVLESGHPDYKEGDLVWGFCKWEEYSLVVPSSQILFKIEHTDVPLSYYTGILGMPGITAYAGFFELGSPKKGETVFVSAASGAVGQLVGQFAKLTGCYVVGSAGSKEKVDLLKNKFGFDGGFNYKEEPDLDAALKRHFPEGIDIYFENVGGKTLDAVLLNMRVHGRIPACGMISQYNLTQPEPVTNLAHLIYKRIRMEGFNSADFFHLNPKFLEFVLPHIRDGKIVYVEDITEGLENGPAALIGLYSGRNVGKQVVVVARE