Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39315.t1 | XP_013443994.1 | 97.4 | 344 | 9 | 0 | 1 | 344 | 1 | 344 | 2.70E-195 | 691 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39315.t1 | Q9SLN8 | 69.6 | 342 | 102 | 1 | 3 | 344 | 4 | 343 | 2.4e-139 | 496.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39315.t1 | A0A072TLD0 | 97.4 | 344 | 9 | 0 | 1 | 344 | 1 | 344 | 2.0e-195 | 691.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene39315 | MS.gene41778 | PPI |
MS.gene39315 | MS.gene022735 | PPI |
MS.gene39315 | MS.gene042467 | PPI |
MS.gene020077 | MS.gene39315 | PPI |
MS.gene39315 | MS.gene45375 | PPI |
MS.gene39315 | MS.gene020226 | PPI |
MS.gene020225 | MS.gene39315 | PPI |
MS.gene39315 | MS.gene020227 | PPI |
MS.gene39327 | MS.gene39315 | PPI |
MS.gene39315 | MS.gene069341 | PPI |
MS.gene39315 | MS.gene54433 | PPI |
MS.gene39315 | MS.gene39314 | PPI |
MS.gene39315 | MS.gene022722 | PPI |
MS.gene39315 | MS.gene97874 | PPI |
MS.gene39315 | MS.gene020076 | PPI |
MS.gene39315 | MS.gene022738 | PPI |
MS.gene39315 | MS.gene39326 | PPI |
MS.gene39315 | MS.gene39313 | PPI |
MS.gene39315 | MS.gene067859 | PPI |
MS.gene54434 | MS.gene39315 | PPI |
MS.gene39315 | MS.gene39327 | PPI |
MS.gene39315 | MS.gene020239 | PPI |
MS.gene39315 | MS.gene022721 | PPI |
MS.gene39315 | MS.gene022736 | PPI |
MS.gene08162 | MS.gene39315 | PPI |
MS.gene39315 | MS.gene39312 | PPI |
MS.gene39315 | MS.gene020033 | PPI |
MS.gene39315 | MS.gene020228 | PPI |
MS.gene39315 | MS.gene022737 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39315.t1 | MTR_8g009980 | 97.384 | 344 | 9 | 0 | 1 | 344 | 1 | 344 | 0.0 | 691 |
MS.gene39315.t1 | MTR_8g010030 | 81.739 | 345 | 61 | 2 | 1 | 344 | 1 | 344 | 0.0 | 584 |
MS.gene39315.t1 | MTR_8g009820 | 80.870 | 345 | 63 | 2 | 1 | 344 | 60 | 402 | 0.0 | 566 |
MS.gene39315.t1 | MTR_8g009840 | 81.711 | 339 | 58 | 3 | 1 | 338 | 1 | 336 | 0.0 | 557 |
MS.gene39315.t1 | MTR_8g009830 | 80.000 | 345 | 65 | 3 | 1 | 344 | 1 | 342 | 0.0 | 551 |
MS.gene39315.t1 | MTR_8g010020 | 73.837 | 344 | 58 | 1 | 1 | 344 | 1 | 312 | 0.0 | 521 |
MS.gene39315.t1 | MTR_8g010000 | 71.884 | 345 | 70 | 3 | 1 | 344 | 1 | 319 | 0.0 | 511 |
MS.gene39315.t1 | MTR_4g082970 | 68.035 | 341 | 109 | 0 | 4 | 344 | 10 | 350 | 1.26e-168 | 473 |
MS.gene39315.t1 | MTR_7g406860 | 59.827 | 346 | 135 | 3 | 1 | 344 | 3 | 346 | 4.04e-145 | 414 |
MS.gene39315.t1 | MTR_8g007325 | 80.909 | 220 | 39 | 2 | 1 | 219 | 1 | 218 | 3.45e-124 | 356 |
MS.gene39315.t1 | MTR_0011s0280 | 46.243 | 346 | 181 | 2 | 3 | 344 | 2 | 346 | 5.83e-111 | 327 |
MS.gene39315.t1 | MTR_2g088190 | 41.040 | 346 | 193 | 7 | 4 | 341 | 5 | 347 | 3.14e-77 | 241 |
MS.gene39315.t1 | MTR_2g088220 | 41.499 | 347 | 190 | 8 | 4 | 341 | 6 | 348 | 3.54e-73 | 230 |
MS.gene39315.t1 | MTR_2g088200 | 39.198 | 324 | 187 | 6 | 4 | 319 | 5 | 326 | 4.07e-67 | 215 |
MS.gene39315.t1 | MTR_5g095030 | 54.762 | 126 | 57 | 0 | 217 | 342 | 11 | 136 | 1.78e-46 | 154 |
MS.gene39315.t1 | MTR_4g086400 | 35.885 | 209 | 126 | 5 | 139 | 341 | 276 | 482 | 3.20e-24 | 103 |
MS.gene39315.t1 | MTR_4g086410 | 35.885 | 209 | 126 | 4 | 139 | 341 | 416 | 622 | 3.49e-24 | 103 |
MS.gene39315.t1 | MTR_4g086400 | 35.885 | 209 | 126 | 5 | 139 | 341 | 416 | 622 | 5.03e-24 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39315.t1 | AT3G03080 | 70.725 | 345 | 98 | 2 | 2 | 344 | 7 | 350 | 1.50e-178 | 498 |
MS.gene39315.t1 | AT5G16990 | 69.118 | 340 | 104 | 1 | 6 | 344 | 4 | 343 | 2.68e-176 | 493 |
MS.gene39315.t1 | AT5G16970 | 68.915 | 341 | 104 | 2 | 6 | 344 | 5 | 345 | 9.94e-176 | 491 |
MS.gene39315.t1 | AT1G26320 | 68.696 | 345 | 102 | 3 | 4 | 344 | 9 | 351 | 8.47e-175 | 489 |
MS.gene39315.t1 | AT5G17000 | 68.915 | 341 | 104 | 2 | 6 | 344 | 5 | 345 | 9.04e-174 | 486 |
MS.gene39315.t1 | AT1G26320 | 67.536 | 345 | 101 | 4 | 4 | 344 | 9 | 346 | 2.62e-170 | 478 |
MS.gene39315.t1 | AT5G37980 | 67.442 | 344 | 105 | 3 | 6 | 344 | 12 | 353 | 8.81e-170 | 476 |
MS.gene39315.t1 | AT5G16960 | 67.442 | 344 | 110 | 2 | 1 | 342 | 1 | 344 | 2.69e-169 | 475 |
MS.gene39315.t1 | AT5G16960 | 67.442 | 344 | 110 | 2 | 1 | 342 | 1 | 344 | 2.69e-169 | 475 |
MS.gene39315.t1 | AT5G37940 | 66.667 | 342 | 111 | 2 | 6 | 344 | 12 | 353 | 1.37e-168 | 473 |
MS.gene39315.t1 | AT5G38000 | 65.598 | 343 | 111 | 3 | 6 | 343 | 12 | 352 | 1.25e-165 | 466 |
MS.gene39315.t1 | AT5G38000 | 64.201 | 338 | 111 | 4 | 6 | 335 | 12 | 347 | 4.14e-158 | 447 |
MS.gene39315.t1 | AT3G59845 | 63.848 | 343 | 119 | 4 | 4 | 342 | 5 | 346 | 1.16e-154 | 438 |
MS.gene39315.t1 | AT5G38000 | 61.808 | 343 | 105 | 4 | 6 | 343 | 12 | 333 | 3.14e-150 | 426 |
MS.gene39315.t1 | AT1G65560 | 58.671 | 346 | 136 | 4 | 4 | 344 | 7 | 350 | 7.77e-137 | 393 |
MS.gene39315.t1 | AT5G16980 | 57.558 | 344 | 107 | 5 | 1 | 344 | 1 | 305 | 1.45e-132 | 380 |
MS.gene39315.t1 | AT5G16980 | 75.221 | 226 | 56 | 0 | 119 | 344 | 14 | 239 | 1.44e-124 | 357 |
MS.gene39315.t1 | AT5G16980 | 75.221 | 226 | 56 | 0 | 119 | 344 | 14 | 239 | 1.44e-124 | 357 |
MS.gene39315.t1 | AT3G59845 | 70.612 | 245 | 70 | 2 | 99 | 342 | 1 | 244 | 3.03e-121 | 349 |
MS.gene39315.t1 | AT1G65560 | 61.624 | 271 | 100 | 3 | 78 | 344 | 4 | 274 | 3.95e-112 | 327 |
MS.gene39315.t1 | AT5G17000 | 68.981 | 216 | 65 | 2 | 6 | 219 | 5 | 220 | 4.97e-106 | 311 |
MS.gene39315.t1 | AT1G49670 | 32.087 | 321 | 194 | 11 | 33 | 341 | 310 | 618 | 2.47e-26 | 110 |
MS.gene39315.t1 | AT1G49670 | 29.619 | 341 | 199 | 12 | 33 | 341 | 310 | 641 | 3.11e-23 | 101 |
MS.gene39315.t1 | AT5G37960 | 50.667 | 75 | 37 | 0 | 265 | 339 | 27 | 101 | 5.75e-18 | 79.0 |
Find 86 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCCAAGAATTTAGGATTT+AGG | 0.194891 | 8.2:-81152225 | None:intergenic |
TCACCTAAATCCTAAATTCT+TGG | 0.229492 | 8.2:+81152222 | MS.gene39315:CDS |
ACCTGAACCTGTAACGAATT+TGG | 0.245348 | 8.2:+81152144 | MS.gene39315:CDS |
GCCAAATTCGTTACAGGTTC+AGG | 0.246307 | 8.2:-81152145 | None:intergenic |
ATAAGGAAGGTGATTTAGTT+TGG | 0.258281 | 8.2:+81150256 | MS.gene39315:CDS |
AGGACAAACTCCAAGAATTT+AGG | 0.263093 | 8.2:-81152232 | None:intergenic |
ATGTTCATGTCTGATTCTTT+AGG | 0.265462 | 8.2:-81149729 | None:intergenic |
AAAACAGTCTCTCCTTTCTT+AGG | 0.292283 | 8.2:-81151182 | None:intergenic |
TTACAGGTAATAGCAGGTTT+TGG | 0.310515 | 8.2:+81150198 | MS.gene39315:intron |
AGATGTGCCAAATTCGTTAC+AGG | 0.319604 | 8.2:-81152151 | None:intergenic |
TAAGGAAGGTGATTTAGTTT+GGG | 0.330541 | 8.2:+81150257 | MS.gene39315:CDS |
AAGTAAATATCAATGCCTTC+AGG | 0.336754 | 8.2:-81152019 | None:intergenic |
ATCAGGACATCCTGATTATA+AGG | 0.342738 | 8.2:+81150239 | MS.gene39315:CDS |
GGTGTATGCAAGAGGATTAA+TGG | 0.357458 | 8.2:-81149871 | None:intergenic |
GTCCCACTTTCCTACTATAC+TGG | 0.376088 | 8.2:+81150351 | MS.gene39315:CDS |
TAGTTTGGGGATTCTGCAAA+TGG | 0.386130 | 8.2:+81150271 | MS.gene39315:CDS |
TTCATGAGATTCCTCATGAA+TGG | 0.393169 | 8.2:-81149831 | None:intergenic |
AAGAATAAGTTTGGATTTGA+CGG | 0.398129 | 8.2:+81151791 | MS.gene39315:CDS |
AAGCTTTAACTTACAGATTG+AGG | 0.403200 | 8.2:-81149894 | None:intergenic |
AAATCACCTTCCTTATAATC+AGG | 0.409142 | 8.2:-81150249 | None:intergenic |
TGAAAAGTATTTGAGAAGAA+AGG | 0.413493 | 8.2:-81150311 | None:intergenic |
TCCTACTATACTGGAATTCT+CGG | 0.425528 | 8.2:+81150360 | MS.gene39315:CDS |
GGTGCAGTCGGTCAACTTGT+TGG | 0.439651 | 8.2:+81151221 | MS.gene39315:CDS |
CCAGCATAAGCAGTTATTCC+TGG | 0.442475 | 8.2:-81151140 | None:intergenic |
GTGTCTAAAGTCCTTGAATC+AGG | 0.445040 | 8.2:+81150222 | MS.gene39315:CDS |
GTGTATGCAAGAGGATTAAT+GGG | 0.451553 | 8.2:-81149870 | None:intergenic |
CTGACAGGATGTTATGTTGT+AGG | 0.455877 | 8.2:+81151257 | MS.gene39315:CDS |
TGTTATGTTGTAGGAAGTGC+TGG | 0.456488 | 8.2:+81151266 | MS.gene39315:CDS |
AATCAGGATGTCCTGATTCA+AGG | 0.467897 | 8.2:-81150233 | None:intergenic |
AATGGTCCTGCAGCATTGAT+TGG | 0.469066 | 8.2:+81152313 | MS.gene39315:CDS |
GATATTTACTTTGAGAATGT+TGG | 0.469382 | 8.2:+81152031 | MS.gene39315:CDS |
CAACATTGCGACCACTATAC+AGG | 0.474009 | 8.2:-81152336 | None:intergenic |
AGCTTTAACTTACAGATTGA+GGG | 0.474523 | 8.2:-81149893 | None:intergenic |
TCTTTGAACACAGGTATGCC+AGG | 0.489073 | 8.2:+81151122 | MS.gene39315:intron |
CACAAGCAGGTATGCGGCCA+TGG | 0.491073 | 8.2:-81152093 | None:intergenic |
CAGTAATTACAGGTAATAGC+AGG | 0.502936 | 8.2:+81150192 | MS.gene39315:intron |
ACCGAGAATTCCAGTATAGT+AGG | 0.503877 | 8.2:-81150361 | None:intergenic |
TTCAAAGCTACATCGAGGTC+AGG | 0.519164 | 8.2:-81151836 | None:intergenic |
CCAGGAATAACTGCTTATGC+TGG | 0.521588 | 8.2:+81151140 | MS.gene39315:CDS |
ATTTACTTTGAGAATGTTGG+AGG | 0.524827 | 8.2:+81152034 | MS.gene39315:CDS |
GGTCAATTCGCTAAACTGAC+AGG | 0.527324 | 8.2:+81151242 | MS.gene39315:CDS |
ATTCCAGTATAGTAGGAAAG+TGG | 0.530249 | 8.2:-81150354 | None:intergenic |
ATAACTGAGGGTCTTGAGAA+TGG | 0.532568 | 8.2:+81152295 | MS.gene39315:CDS |
ACCTCGATGTAGCTTTGAAG+AGG | 0.533703 | 8.2:+81151840 | MS.gene39315:CDS |
ATACTGAAGGACTATGTGTC+TGG | 0.534384 | 8.2:+81149702 | MS.gene39315:CDS |
CAAATGGGAAGAGTACAGTT+TGG | 0.537330 | 8.2:+81150287 | MS.gene39315:CDS |
AGTAAATATCAATGCCTTCA+GGG | 0.538437 | 8.2:-81152018 | None:intergenic |
TATGCTGGTTTCTTTGAACT+AGG | 0.545755 | 8.2:+81151155 | MS.gene39315:CDS |
TACAGGCCAATCAATGCTGC+AGG | 0.549132 | 8.2:-81152319 | None:intergenic |
TCAGCTGCCTCTGGTGCAGT+CGG | 0.551705 | 8.2:+81151209 | MS.gene39315:CDS |
TCCTCCCTCATATCAGAGAC+GGG | 0.552336 | 8.2:+81152251 | MS.gene39315:CDS |
AAGGAAGGTGATTTAGTTTG+GGG | 0.554385 | 8.2:+81150258 | MS.gene39315:CDS |
GTCCTCCCTCATATCAGAGA+CGG | 0.557651 | 8.2:+81152250 | MS.gene39315:CDS |
GAACTAGGCAGTCCTAAGAA+AGG | 0.566199 | 8.2:+81151170 | MS.gene39315:CDS |
CATATATAAGCGGATTCGAA+TGG | 0.569235 | 8.2:+81152174 | MS.gene39315:CDS |
GCATTGATTGGCCTGTATAG+TGG | 0.570454 | 8.2:+81152325 | MS.gene39315:CDS |
CTTCTGAATATGAGAGTCCA+TGG | 0.570985 | 8.2:+81152076 | MS.gene39315:CDS |
CTGTATAGTGGTCGCAATGT+TGG | 0.571188 | 8.2:+81152337 | MS.gene39315:CDS |
TATAAGCGGATTCGAATGGA+AGG | 0.574885 | 8.2:+81152178 | MS.gene39315:CDS |
GGACATCCTGATTATAAGGA+AGG | 0.575310 | 8.2:+81150243 | MS.gene39315:CDS |
AAGTGCTGGAAGTAAAGAGA+AGG | 0.576759 | 8.2:+81151280 | MS.gene39315:CDS |
AGTTTGGGGATTCTGCAAAT+GGG | 0.577655 | 8.2:+81150272 | MS.gene39315:CDS |
TGACGGAGGTTTCAACTACA+AGG | 0.579141 | 8.2:+81151808 | MS.gene39315:CDS |
TTCCAGTATAGTAGGAAAGT+GGG | 0.584748 | 8.2:-81150353 | None:intergenic |
TGTGAGATCATTCCACAAGC+AGG | 0.587370 | 8.2:-81152106 | None:intergenic |
CAAATCAGGCACTTCCCTGA+AGG | 0.588407 | 8.2:+81152004 | MS.gene39315:intron |
CATGGCCGCATACCTGCTTG+TGG | 0.591190 | 8.2:+81152094 | MS.gene39315:CDS |
AATAAGTTTGGATTTGACGG+AGG | 0.599765 | 8.2:+81151794 | MS.gene39315:CDS |
GCTTTAACTTACAGATTGAG+GGG | 0.600804 | 8.2:-81149892 | None:intergenic |
GGATTAATGGGAGCTCCTTG+TGG | 0.608435 | 8.2:-81149858 | None:intergenic |
TGGCACATCTCATATATAAG+CGG | 0.622685 | 8.2:+81152164 | MS.gene39315:CDS |
GATTGAGGGGTGTATGCAAG+AGG | 0.633379 | 8.2:-81149879 | None:intergenic |
TCCCGTCTCTGATATGAGGG+AGG | 0.638712 | 8.2:-81152252 | None:intergenic |
AGAATATCATTGGAACCTTG+TGG | 0.639489 | 8.2:-81149780 | None:intergenic |
ATTACTCTTAAGCTTCCACA+AGG | 0.646103 | 8.2:+81149765 | MS.gene39315:CDS |
TGTCTTGTGATCCATTCATG+AGG | 0.654206 | 8.2:+81149820 | MS.gene39315:CDS |
TCATTCCACAAGCAGGTATG+CGG | 0.655597 | 8.2:-81152099 | None:intergenic |
TACCAAACATGGCACAAGTG+AGG | 0.656499 | 8.2:+81149667 | None:intergenic |
AAGTTGACCGACTGCACCAG+AGG | 0.660264 | 8.2:-81151216 | None:intergenic |
ATAAGCGGATTCGAATGGAA+GGG | 0.669316 | 8.2:+81152179 | MS.gene39315:CDS |
GAACAAGCAAGTGATACTGA+AGG | 0.679731 | 8.2:+81149689 | MS.gene39315:CDS |
TCGCAATGTTGGTAAACAAG+TGG | 0.707437 | 8.2:+81152348 | MS.gene39315:CDS |
ACCTCTTCAAAGCTACATCG+AGG | 0.730475 | 8.2:-81151841 | None:intergenic |
AATCTCATGAACAAACCACA+AGG | 0.737957 | 8.2:+81149843 | MS.gene39315:CDS |
TATGTTGAAGACATAACTGA+GGG | 0.741574 | 8.2:+81152283 | MS.gene39315:CDS |
GTATGTTGAAGACATAACTG+AGG | 0.767481 | 8.2:+81152282 | MS.gene39315:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACATTATATATACAAATA+AGG | - | chr8.2:81151520-81151539 | None:intergenic | 10.0% |
!! | CATAAGTTTATAAATTATAA+TGG | - | chr8.2:81151929-81151948 | None:intergenic | 10.0% |
!!! | TTTCAATTTATATTGATTTA+TGG | + | chr8.2:81150397-81150416 | MS.gene39315:intron | 10.0% |
!!! | TTTTATTTTATTTTTTGGAT+AGG | - | chr8.2:81151482-81151501 | None:intergenic | 10.0% |
!! | TTATATATACAAATAAGGAA+CGG | - | chr8.2:81151515-81151534 | None:intergenic | 15.0% |
!!! | AACTACTGTATTTTATTATT+CGG | - | chr8.2:81151960-81151979 | None:intergenic | 15.0% |
!!! | ATATAATGTATACAGTTTTA+TGG | + | chr8.2:81151529-81151548 | MS.gene39315:intron | 15.0% |
!!! | TATAATTTTTCAGTAATTAC+AGG | + | chr8.2:81150182-81150201 | MS.gene39315:intron | 15.0% |
!! | AAAATTTGCATAATGAATTG+TGG | + | chr8.2:81151654-81151673 | MS.gene39315:intron | 20.0% |
!! | AAATTTGACATATACTCAAA+AGG | - | chr8.2:81149931-81149950 | None:intergenic | 20.0% |
!! | AATGAGAACATTAAAAACTT+AGG | - | chr8.2:81151003-81151022 | None:intergenic | 20.0% |
!! | AATTTGACATATACTCAAAA+GGG | - | chr8.2:81149930-81149949 | None:intergenic | 20.0% |
!! | AGATAAGAAAAGATACTTTA+AGG | - | chr8.2:81149957-81149976 | None:intergenic | 20.0% |
!! | CAATTATGAAAAGAAGAAAA+TGG | - | chr8.2:81150905-81150924 | None:intergenic | 20.0% |
!! | CAGTAAAAAAAAACTATTTC+AGG | - | chr8.2:81151704-81151723 | None:intergenic | 20.0% |
!! | TATATATACAAATAAGGAAC+GGG | - | chr8.2:81151514-81151533 | None:intergenic | 20.0% |
!! | TATCACTATCATTAAACAAT+AGG | + | chr8.2:81150783-81150802 | MS.gene39315:intron | 20.0% |
!! | TCTTAGCAAATTAAAGAAAT+TGG | + | chr8.2:81150043-81150062 | MS.gene39315:intron | 20.0% |
!!! | AATTGAAGGTTATTTAGAAT+TGG | + | chr8.2:81150920-81150939 | MS.gene39315:intron | 20.0% |
!!! | ATTTTTTAGCAGAATATCAT+TGG | - | chr8.2:81149793-81149812 | None:intergenic | 20.0% |
!!! | GGCGATTTTATTTTATTTTT+TGG | - | chr8.2:81151487-81151506 | None:intergenic | 20.0% |
!!! | TATTGTTTAATGATAGTGAT+AGG | - | chr8.2:81150784-81150803 | None:intergenic | 20.0% |
!!! | TGTTTTGCTTTTTTAACATA+TGG | + | chr8.2:81151091-81151110 | MS.gene39315:intron | 20.0% |
!!! | TTTCTTCTTTTCATAATTGA+AGG | + | chr8.2:81150906-81150925 | MS.gene39315:intron | 20.0% |
!!! | TTTTGTTTAATGAGTAAGTT+AGG | + | chr8.2:81150499-81150518 | MS.gene39315:intron | 20.0% |
! | AAGAATAAGTTTGGATTTGA+CGG | + | chr8.2:81151791-81151810 | MS.gene39315:CDS | 25.0% |
! | ATAAAGGTTAAATAAGTCGA+AGG | + | chr8.2:81151382-81151401 | MS.gene39315:intron | 25.0% |
! | CATTAAACAATAGGTATAGT+AGG | + | chr8.2:81150792-81150811 | MS.gene39315:intron | 25.0% |
! | GAAAAGAAGAAAATGGAAAA+GGG | - | chr8.2:81150898-81150917 | None:intergenic | 25.0% |
! | GTTAAAAAAGCAAAACAGAA+TGG | - | chr8.2:81151088-81151107 | None:intergenic | 25.0% |
! | TGAAAAGAAGAAAATGGAAA+AGG | - | chr8.2:81150899-81150918 | None:intergenic | 25.0% |
! | TTTACCGAAATATACAAATC+AGG | + | chr8.2:81151990-81152009 | MS.gene39315:intron | 25.0% |
!! | AAAAAAACTATTTCAGGTCT+TGG | - | chr8.2:81151698-81151717 | None:intergenic | 25.0% |
!! | GATATTTACTTTGAGAATGT+TGG | + | chr8.2:81152031-81152050 | MS.gene39315:CDS | 25.0% |
!!! | ATGGTTCTAATGTACAAATT+TGG | + | chr8.2:81151548-81151567 | MS.gene39315:intron | 25.0% |
!!! | ATGTTTTTTTTACAATCAGG+TGG | + | chr8.2:81151760-81151779 | MS.gene39315:intron | 25.0% |
!!! | GATCTTTTGAAGAATAAGTT+TGG | + | chr8.2:81151782-81151801 | MS.gene39315:CDS | 25.0% |
!!! | TGAAAAGTATTTGAGAAGAA+AGG | - | chr8.2:81150314-81150333 | None:intergenic | 25.0% |
!!! | TGCATGTTTTTTTTACAATC+AGG | + | chr8.2:81151757-81151776 | MS.gene39315:intron | 25.0% |
AAATCACCTTCCTTATAATC+AGG | - | chr8.2:81150252-81150271 | None:intergenic | 30.0% | |
AAGTAAATATCAATGCCTTC+AGG | - | chr8.2:81152022-81152041 | None:intergenic | 30.0% | |
ACATGCATTCAAACAAAAGA+AGG | - | chr8.2:81151744-81151763 | None:intergenic | 30.0% | |
AGTAAATATCAATGCCTTCA+GGG | - | chr8.2:81152021-81152040 | None:intergenic | 30.0% | |
ATAAGGAAGGTGATTTAGTT+TGG | + | chr8.2:81150256-81150275 | MS.gene39315:CDS | 30.0% | |
ATAAGTCGAAGGAGTTATAA+AGG | + | chr8.2:81151393-81151412 | MS.gene39315:intron | 30.0% | |
ATGTATCTTCCATGACAAAA+TGG | - | chr8.2:81150829-81150848 | None:intergenic | 30.0% | |
ATGTTCATGTCTGATTCTTT+AGG | - | chr8.2:81149732-81149751 | None:intergenic | 30.0% | |
ATTCAAACAAAAGAAGGACT+AGG | - | chr8.2:81151738-81151757 | None:intergenic | 30.0% | |
CAAACACTAATAATCAGCTA+CGG | - | chr8.2:81150478-81150497 | None:intergenic | 30.0% | |
CAGTATCAATGTAGAGAAAA+TGG | - | chr8.2:81150741-81150760 | None:intergenic | 30.0% | |
TATGTTGAAGACATAACTGA+GGG | + | chr8.2:81152283-81152302 | MS.gene39315:CDS | 30.0% | |
TCACCTAAATCCTAAATTCT+TGG | + | chr8.2:81152222-81152241 | MS.gene39315:CDS | 30.0% | |
TCGTATCAATAAAACTTGCA+GGG | + | chr8.2:81150704-81150723 | MS.gene39315:intron | 30.0% | |
TTCGTATCAATAAAACTTGC+AGG | + | chr8.2:81150703-81150722 | MS.gene39315:intron | 30.0% | |
! | AAGCTTTAACTTACAGATTG+AGG | - | chr8.2:81149897-81149916 | None:intergenic | 30.0% |
! | ACTCCAAGAATTTAGGATTT+AGG | - | chr8.2:81152228-81152247 | None:intergenic | 30.0% |
! | ACTTTTCAAAATTGAGCACA+CGG | + | chr8.2:81150326-81150345 | MS.gene39315:CDS | 30.0% |
! | AGCTTTAACTTACAGATTGA+GGG | - | chr8.2:81149896-81149915 | None:intergenic | 30.0% |
! | AGTGCCTGATTTGTATATTT+CGG | - | chr8.2:81151997-81152016 | None:intergenic | 30.0% |
! | ATTTACTTTGAGAATGTTGG+AGG | + | chr8.2:81152034-81152053 | MS.gene39315:CDS | 30.0% |
! | GTTGAGCTAGTTTGATATAA+AGG | + | chr8.2:81151366-81151385 | MS.gene39315:intron | 30.0% |
! | TAAGGAAGGTGATTTAGTTT+GGG | + | chr8.2:81150257-81150276 | MS.gene39315:CDS | 30.0% |
! | TACAATTTTCTCCTTCACTA+GGG | - | chr8.2:81151432-81151451 | None:intergenic | 30.0% |
! | TTACAATTTTCTCCTTCACT+AGG | - | chr8.2:81151433-81151452 | None:intergenic | 30.0% |
! | TTTTTCCCTCCATTTTCTTT+TGG | - | chr8.2:81151638-81151657 | None:intergenic | 30.0% |
!! | AAATGGAAAAGGGTTGATAA+AGG | - | chr8.2:81150888-81150907 | None:intergenic | 30.0% |
AAAACAGTCTCTCCTTTCTT+AGG | - | chr8.2:81151185-81151204 | None:intergenic | 35.0% | |
AAACTAGCTCCTTCATGTAT+TGG | + | chr8.2:81150675-81150694 | MS.gene39315:intron | 35.0% | |
AATAAGTTTGGATTTGACGG+AGG | + | chr8.2:81151794-81151813 | MS.gene39315:CDS | 35.0% | |
AATCTCATGAACAAACCACA+AGG | + | chr8.2:81149843-81149862 | MS.gene39315:CDS | 35.0% | |
AGAATATCATTGGAACCTTG+TGG | - | chr8.2:81149783-81149802 | None:intergenic | 35.0% | |
AGGACAAACTCCAAGAATTT+AGG | - | chr8.2:81152235-81152254 | None:intergenic | 35.0% | |
ATCAGGACATCCTGATTATA+AGG | + | chr8.2:81150239-81150258 | MS.gene39315:CDS | 35.0% | |
ATTACTCTTAAGCTTCCACA+AGG | + | chr8.2:81149765-81149784 | MS.gene39315:CDS | 35.0% | |
ATTCCAGTATAGTAGGAAAG+TGG | - | chr8.2:81150357-81150376 | None:intergenic | 35.0% | |
CAGTAATTACAGGTAATAGC+AGG | + | chr8.2:81150192-81150211 | MS.gene39315:intron | 35.0% | |
CAGTCCTATTTATACTGCAT+AGG | - | chr8.2:81150582-81150601 | None:intergenic | 35.0% | |
CGAAGAAAACCAATACATGA+AGG | - | chr8.2:81150687-81150706 | None:intergenic | 35.0% | |
GTATGTTGAAGACATAACTG+AGG | + | chr8.2:81152282-81152301 | MS.gene39315:CDS | 35.0% | |
GTGTATGCAAGAGGATTAAT+GGG | - | chr8.2:81149873-81149892 | None:intergenic | 35.0% | |
TCCTACTATACTGGAATTCT+CGG | + | chr8.2:81150360-81150379 | MS.gene39315:CDS | 35.0% | |
TCCTATTTATACTGCATAGG+AGG | - | chr8.2:81150579-81150598 | None:intergenic | 35.0% | |
TCCTCCTATGCAGTATAAAT+AGG | + | chr8.2:81150575-81150594 | MS.gene39315:intron | 35.0% | |
TGGCACATCTCATATATAAG+CGG | + | chr8.2:81152164-81152183 | MS.gene39315:CDS | 35.0% | |
TTACCCTTGCCAAAAGAAAA+TGG | + | chr8.2:81151626-81151645 | MS.gene39315:intron | 35.0% | |
TTCATGAGATTCCTCATGAA+TGG | - | chr8.2:81149834-81149853 | None:intergenic | 35.0% | |
TTCCAGTATAGTAGGAAAGT+GGG | - | chr8.2:81150356-81150375 | None:intergenic | 35.0% | |
TTGATTTCAGTCTCATATGC+AGG | + | chr8.2:81150432-81150451 | MS.gene39315:intron | 35.0% | |
! | ATTTTCTTTTGGCAAGGGTA+AGG | - | chr8.2:81151627-81151646 | None:intergenic | 35.0% |
! | CATATATAAGCGGATTCGAA+TGG | + | chr8.2:81152174-81152193 | MS.gene39315:CDS | 35.0% |
! | GCTTTAACTTACAGATTGAG+GGG | - | chr8.2:81149895-81149914 | None:intergenic | 35.0% |
! | TACAGGTAATAGCAGGTTTT+GGG | + | chr8.2:81150199-81150218 | MS.gene39315:intron | 35.0% |
! | TTACAGGTAATAGCAGGTTT+TGG | + | chr8.2:81150198-81150217 | MS.gene39315:intron | 35.0% |
! | TTTTCTTTTGGCAAGGGTAA+GGG | - | chr8.2:81151626-81151645 | None:intergenic | 35.0% |
!! | AAGGAAGGTGATTTAGTTTG+GGG | + | chr8.2:81150258-81150277 | MS.gene39315:CDS | 35.0% |
!! | AATTTAGTTTGTGCTGTGCA+TGG | + | chr8.2:81149979-81149998 | MS.gene39315:intron | 35.0% |
!! | TACAAATAAGGAACGGGTTA+TGG | - | chr8.2:81151508-81151527 | None:intergenic | 35.0% |
!! | TATGCTGGTTTCTTTGAACT+AGG | + | chr8.2:81151155-81151174 | MS.gene39315:CDS | 35.0% |
AATCAGGATGTCCTGATTCA+AGG | - | chr8.2:81150236-81150255 | None:intergenic | 40.0% | |
ACCGAGAATTCCAGTATAGT+AGG | - | chr8.2:81150364-81150383 | None:intergenic | 40.0% | |
ACCTGAACCTGTAACGAATT+TGG | + | chr8.2:81152144-81152163 | MS.gene39315:CDS | 40.0% | |
AGAGAAGTTATGCAGAGATG+TGG | - | chr8.2:81150976-81150995 | None:intergenic | 40.0% | |
AGATGTGCCAAATTCGTTAC+AGG | - | chr8.2:81152154-81152173 | None:intergenic | 40.0% | |
AGTTTGGGGATTCTGCAAAT+GGG | + | chr8.2:81150272-81150291 | MS.gene39315:CDS | 40.0% | |
ATAACTGAGGGTCTTGAGAA+TGG | + | chr8.2:81152295-81152314 | MS.gene39315:CDS | 40.0% | |
ATACTGAAGGACTATGTGTC+TGG | + | chr8.2:81149702-81149721 | MS.gene39315:CDS | 40.0% | |
ATAGGTATAGTAGGCTGTAG+AGG | + | chr8.2:81150801-81150820 | MS.gene39315:intron | 40.0% | |
CACTAATAATCAGCTACGGT+TGG | - | chr8.2:81150474-81150493 | None:intergenic | 40.0% | |
CCTTGCCAAAAGAAAATGGA+GGG | + | chr8.2:81151630-81151649 | MS.gene39315:intron | 40.0% | |
CTGACAGGATGTTATGTTGT+AGG | + | chr8.2:81151257-81151276 | MS.gene39315:CDS | 40.0% | |
CTTCTGAATATGAGAGTCCA+TGG | + | chr8.2:81152076-81152095 | MS.gene39315:CDS | 40.0% | |
GAACAAGCAAGTGATACTGA+AGG | + | chr8.2:81149689-81149708 | MS.gene39315:CDS | 40.0% | |
GGACATCCTGATTATAAGGA+AGG | + | chr8.2:81150243-81150262 | MS.gene39315:CDS | 40.0% | |
GGTGTATGCAAGAGGATTAA+TGG | - | chr8.2:81149874-81149893 | None:intergenic | 40.0% | |
GTATTCTGCACTGAACAGTT+TGG | + | chr8.2:81151866-81151885 | MS.gene39315:intron | 40.0% | |
TAGTTTGGGGATTCTGCAAA+TGG | + | chr8.2:81150271-81150290 | MS.gene39315:CDS | 40.0% | |
TCGAAGGAGTTATAAAGGAC+CGG | + | chr8.2:81151398-81151417 | MS.gene39315:intron | 40.0% | |
TGTCTTGTGATCCATTCATG+AGG | + | chr8.2:81149820-81149839 | MS.gene39315:CDS | 40.0% | |
! | ACAGGTAATAGCAGGTTTTG+GGG | + | chr8.2:81150200-81150219 | MS.gene39315:intron | 40.0% |
! | ATAAGCGGATTCGAATGGAA+GGG | + | chr8.2:81152179-81152198 | MS.gene39315:CDS | 40.0% |
! | ATATGCAGGCCTTATCTGTT+AGG | + | chr8.2:81150446-81150465 | MS.gene39315:intron | 40.0% |
! | ATTTTCCCGTCTCTGATATG+AGG | - | chr8.2:81152259-81152278 | None:intergenic | 40.0% |
! | CAAATGGGAAGAGTACAGTT+TGG | + | chr8.2:81150287-81150306 | MS.gene39315:CDS | 40.0% |
! | CCTCCATTTTCTTTTGGCAA+GGG | - | chr8.2:81151632-81151651 | None:intergenic | 40.0% |
! | GAGTAAGTTAGGTTAGCTGT+TGG | + | chr8.2:81150510-81150529 | MS.gene39315:intron | 40.0% |
! | GTAGAGGATCCATTTTGTCA+TGG | + | chr8.2:81150817-81150836 | MS.gene39315:intron | 40.0% |
! | GTGCGTTTTTCTTTGAACAC+AGG | + | chr8.2:81151113-81151132 | MS.gene39315:intron | 40.0% |
! | GTGTCTAAAGTCCTTGAATC+AGG | + | chr8.2:81150222-81150241 | MS.gene39315:CDS | 40.0% |
! | TATAAGCGGATTCGAATGGA+AGG | + | chr8.2:81152178-81152197 | MS.gene39315:CDS | 40.0% |
! | TCGCAATGTTGGTAAACAAG+TGG | + | chr8.2:81152348-81152367 | MS.gene39315:CDS | 40.0% |
! | TGTTATGTTGTAGGAAGTGC+TGG | + | chr8.2:81151266-81151285 | MS.gene39315:CDS | 40.0% |
! | TTTTCCCGTCTCTGATATGA+GGG | - | chr8.2:81152258-81152277 | None:intergenic | 40.0% |
!! | AAGTGCTGGAAGTAAAGAGA+AGG | + | chr8.2:81151280-81151299 | MS.gene39315:CDS | 40.0% |
!! | AGGGTTGATAAAGGCTAAAC+AGG | - | chr8.2:81150879-81150898 | None:intergenic | 40.0% |
!! | GACAGTCTTGTTGCAGAATT+AGG | + | chr8.2:81150601-81150620 | MS.gene39315:intron | 40.0% |
ACCTCTTCAAAGCTACATCG+AGG | - | chr8.2:81151844-81151863 | None:intergenic | 45.0% | |
CAACATTGCGACCACTATAC+AGG | - | chr8.2:81152339-81152358 | None:intergenic | 45.0% | |
CCAGCATAAGCAGTTATTCC+TGG | - | chr8.2:81151143-81151162 | None:intergenic | 45.0% | |
CCAGGAATAACTGCTTATGC+TGG | + | chr8.2:81151140-81151159 | MS.gene39315:CDS | 45.0% | |
CCCTTGCCAAAAGAAAATGG+AGG | + | chr8.2:81151629-81151648 | MS.gene39315:intron | 45.0% | |
CGAAGGAGTTATAAAGGACC+GGG | + | chr8.2:81151399-81151418 | MS.gene39315:intron | 45.0% | |
CTGTATAGTGGTCGCAATGT+TGG | + | chr8.2:81152337-81152356 | MS.gene39315:CDS | 45.0% | |
CTTCACTAGGGTTTAAACCC+CGG | - | chr8.2:81151420-81151439 | None:intergenic | 45.0% | |
GAACTAGGCAGTCCTAAGAA+AGG | + | chr8.2:81151170-81151189 | MS.gene39315:CDS | 45.0% | |
GAAGGAGTTATAAAGGACCG+GGG | + | chr8.2:81151400-81151419 | MS.gene39315:intron | 45.0% | |
GAGTATGCTCTAGTGAGAAG+AGG | + | chr8.2:81150652-81150671 | MS.gene39315:intron | 45.0% | |
GCCAAATTCGTTACAGGTTC+AGG | - | chr8.2:81152148-81152167 | None:intergenic | 45.0% | |
GGTCAATTCGCTAAACTGAC+AGG | + | chr8.2:81151242-81151261 | MS.gene39315:CDS | 45.0% | |
GTCCCACTTTCCTACTATAC+TGG | + | chr8.2:81150351-81150370 | MS.gene39315:CDS | 45.0% | |
GTTGGTGTACTCTGTTAGCT+AGG | + | chr8.2:81150528-81150547 | MS.gene39315:intron | 45.0% | |
TAGTATGTCACCGTCACCTT+GGG | + | chr8.2:81151334-81151353 | MS.gene39315:intron | 45.0% | |
TCATTCCACAAGCAGGTATG+CGG | - | chr8.2:81152102-81152121 | None:intergenic | 45.0% | |
TCTTTGAACACAGGTATGCC+AGG | + | chr8.2:81151122-81151141 | MS.gene39315:intron | 45.0% | |
TGACGGAGGTTTCAACTACA+AGG | + | chr8.2:81151808-81151827 | MS.gene39315:CDS | 45.0% | |
TGTGAGATCATTCCACAAGC+AGG | - | chr8.2:81152109-81152128 | None:intergenic | 45.0% | |
TTAGTATGTCACCGTCACCT+TGG | + | chr8.2:81151333-81151352 | MS.gene39315:intron | 45.0% | |
TTCAAAGCTACATCGAGGTC+AGG | - | chr8.2:81151839-81151858 | None:intergenic | 45.0% | |
! | AAGGTGACGGTGACATACTA+AGG | - | chr8.2:81151334-81151353 | None:intergenic | 45.0% |
! | CCCTCCATTTTCTTTTGGCA+AGG | - | chr8.2:81151633-81151652 | None:intergenic | 45.0% |
! | CGGTTGGTTCCTAACAGATA+AGG | - | chr8.2:81150458-81150477 | None:intergenic | 45.0% |
!! | AATGGTCCTGCAGCATTGAT+TGG | + | chr8.2:81152313-81152332 | MS.gene39315:CDS | 45.0% |
!! | ACCTCGATGTAGCTTTGAAG+AGG | + | chr8.2:81151840-81151859 | MS.gene39315:CDS | 45.0% |
!! | GCATTGATTGGCCTGTATAG+TGG | + | chr8.2:81152325-81152344 | MS.gene39315:CDS | 45.0% |
!! | GTTTTTGTTTCAGCTGCCTC+TGG | + | chr8.2:81151200-81151219 | MS.gene39315:CDS | 45.0% |
AGTATGTCACCGTCACCTTG+GGG | + | chr8.2:81151335-81151354 | MS.gene39315:intron | 50.0% | |
CAAATCAGGCACTTCCCTGA+AGG | + | chr8.2:81152004-81152023 | MS.gene39315:intron | 50.0% | |
CGGGGTTTAAACCCTAGTGA+AGG | + | chr8.2:81151418-81151437 | MS.gene39315:intron | 50.0% | |
GGATTAATGGGAGCTCCTTG+TGG | - | chr8.2:81149861-81149880 | None:intergenic | 50.0% | |
GTCCTCCCTCATATCAGAGA+CGG | + | chr8.2:81152250-81152269 | MS.gene39315:CDS | 50.0% | |
TACAGGCCAATCAATGCTGC+AGG | - | chr8.2:81152322-81152341 | None:intergenic | 50.0% | |
TCCTCCCTCATATCAGAGAC+GGG | + | chr8.2:81152251-81152270 | MS.gene39315:CDS | 50.0% | |
! | GATTGAGGGGTGTATGCAAG+AGG | - | chr8.2:81149882-81149901 | None:intergenic | 50.0% |
AAGTTGACCGACTGCACCAG+AGG | - | chr8.2:81151219-81151238 | None:intergenic | 55.0% | |
CTACCCAATCCCCAAGGTGA+CGG | - | chr8.2:81151347-81151366 | None:intergenic | 55.0% | |
GCTCAACTACCCAATCCCCA+AGG | - | chr8.2:81151353-81151372 | None:intergenic | 55.0% | |
GGTGCAGTCGGTCAACTTGT+TGG | + | chr8.2:81151221-81151240 | MS.gene39315:CDS | 55.0% | |
TCACCGTCACCTTGGGGATT+GGG | + | chr8.2:81151341-81151360 | MS.gene39315:intron | 55.0% | |
TCCCGTCTCTGATATGAGGG+AGG | - | chr8.2:81152255-81152274 | None:intergenic | 55.0% | |
CACAAGCAGGTATGCGGCCA+TGG | - | chr8.2:81152096-81152115 | None:intergenic | 60.0% | |
CATGGCCGCATACCTGCTTG+TGG | + | chr8.2:81152094-81152113 | MS.gene39315:CDS | 60.0% | |
GTCACCGTCACCTTGGGGAT+TGG | + | chr8.2:81151340-81151359 | MS.gene39315:intron | 60.0% | |
TCAGCTGCCTCTGGTGCAGT+CGG | + | chr8.2:81151209-81151228 | MS.gene39315:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 81149675 | 81152390 | 81149675 | ID=MS.gene39315 |
chr8.2 | mRNA | 81149675 | 81152390 | 81149675 | ID=MS.gene39315.t1;Parent=MS.gene39315 |
chr8.2 | exon | 81149675 | 81149902 | 81149675 | ID=MS.gene39315.t1.exon1;Parent=MS.gene39315.t1 |
chr8.2 | CDS | 81149675 | 81149902 | 81149675 | ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1 |
chr8.2 | exon | 81150204 | 81150381 | 81150204 | ID=MS.gene39315.t1.exon2;Parent=MS.gene39315.t1 |
chr8.2 | CDS | 81150204 | 81150381 | 81150204 | ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1 |
chr8.2 | exon | 81151135 | 81151301 | 81151135 | ID=MS.gene39315.t1.exon3;Parent=MS.gene39315.t1 |
chr8.2 | CDS | 81151135 | 81151301 | 81151135 | ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1 |
chr8.2 | exon | 81151779 | 81151861 | 81151779 | ID=MS.gene39315.t1.exon4;Parent=MS.gene39315.t1 |
chr8.2 | CDS | 81151779 | 81151861 | 81151779 | ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1 |
chr8.2 | exon | 81152012 | 81152390 | 81152012 | ID=MS.gene39315.t1.exon5;Parent=MS.gene39315.t1 |
chr8.2 | CDS | 81152012 | 81152390 | 81152012 | ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1 |
Gene Sequence |
Protein sequence |