AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39315


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39315.t1 MTR_8g009980 97.384 344 9 0 1 344 1 344 0.0 691
MS.gene39315.t1 MTR_8g010030 81.739 345 61 2 1 344 1 344 0.0 584
MS.gene39315.t1 MTR_8g009820 80.870 345 63 2 1 344 60 402 0.0 566
MS.gene39315.t1 MTR_8g009840 81.711 339 58 3 1 338 1 336 0.0 557
MS.gene39315.t1 MTR_8g009830 80.000 345 65 3 1 344 1 342 0.0 551
MS.gene39315.t1 MTR_8g010020 73.837 344 58 1 1 344 1 312 0.0 521
MS.gene39315.t1 MTR_8g010000 71.884 345 70 3 1 344 1 319 0.0 511
MS.gene39315.t1 MTR_4g082970 68.035 341 109 0 4 344 10 350 1.26e-168 473
MS.gene39315.t1 MTR_7g406860 59.827 346 135 3 1 344 3 346 4.04e-145 414
MS.gene39315.t1 MTR_8g007325 80.909 220 39 2 1 219 1 218 3.45e-124 356
MS.gene39315.t1 MTR_0011s0280 46.243 346 181 2 3 344 2 346 5.83e-111 327
MS.gene39315.t1 MTR_2g088190 41.040 346 193 7 4 341 5 347 3.14e-77 241
MS.gene39315.t1 MTR_2g088220 41.499 347 190 8 4 341 6 348 3.54e-73 230
MS.gene39315.t1 MTR_2g088200 39.198 324 187 6 4 319 5 326 4.07e-67 215
MS.gene39315.t1 MTR_5g095030 54.762 126 57 0 217 342 11 136 1.78e-46 154
MS.gene39315.t1 MTR_4g086400 35.885 209 126 5 139 341 276 482 3.20e-24 103
MS.gene39315.t1 MTR_4g086410 35.885 209 126 4 139 341 416 622 3.49e-24 103
MS.gene39315.t1 MTR_4g086400 35.885 209 126 5 139 341 416 622 5.03e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39315.t1 AT3G03080 70.725 345 98 2 2 344 7 350 1.50e-178 498
MS.gene39315.t1 AT5G16990 69.118 340 104 1 6 344 4 343 2.68e-176 493
MS.gene39315.t1 AT5G16970 68.915 341 104 2 6 344 5 345 9.94e-176 491
MS.gene39315.t1 AT1G26320 68.696 345 102 3 4 344 9 351 8.47e-175 489
MS.gene39315.t1 AT5G17000 68.915 341 104 2 6 344 5 345 9.04e-174 486
MS.gene39315.t1 AT1G26320 67.536 345 101 4 4 344 9 346 2.62e-170 478
MS.gene39315.t1 AT5G37980 67.442 344 105 3 6 344 12 353 8.81e-170 476
MS.gene39315.t1 AT5G16960 67.442 344 110 2 1 342 1 344 2.69e-169 475
MS.gene39315.t1 AT5G16960 67.442 344 110 2 1 342 1 344 2.69e-169 475
MS.gene39315.t1 AT5G37940 66.667 342 111 2 6 344 12 353 1.37e-168 473
MS.gene39315.t1 AT5G38000 65.598 343 111 3 6 343 12 352 1.25e-165 466
MS.gene39315.t1 AT5G38000 64.201 338 111 4 6 335 12 347 4.14e-158 447
MS.gene39315.t1 AT3G59845 63.848 343 119 4 4 342 5 346 1.16e-154 438
MS.gene39315.t1 AT5G38000 61.808 343 105 4 6 343 12 333 3.14e-150 426
MS.gene39315.t1 AT1G65560 58.671 346 136 4 4 344 7 350 7.77e-137 393
MS.gene39315.t1 AT5G16980 57.558 344 107 5 1 344 1 305 1.45e-132 380
MS.gene39315.t1 AT5G16980 75.221 226 56 0 119 344 14 239 1.44e-124 357
MS.gene39315.t1 AT5G16980 75.221 226 56 0 119 344 14 239 1.44e-124 357
MS.gene39315.t1 AT3G59845 70.612 245 70 2 99 342 1 244 3.03e-121 349
MS.gene39315.t1 AT1G65560 61.624 271 100 3 78 344 4 274 3.95e-112 327
MS.gene39315.t1 AT5G17000 68.981 216 65 2 6 219 5 220 4.97e-106 311
MS.gene39315.t1 AT1G49670 32.087 321 194 11 33 341 310 618 2.47e-26 110
MS.gene39315.t1 AT1G49670 29.619 341 199 12 33 341 310 641 3.11e-23 101
MS.gene39315.t1 AT5G37960 50.667 75 37 0 265 339 27 101 5.75e-18 79.0

Find 86 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCCAAGAATTTAGGATTT+AGG 0.194891 8.2:-81152225 None:intergenic
TCACCTAAATCCTAAATTCT+TGG 0.229492 8.2:+81152222 MS.gene39315:CDS
ACCTGAACCTGTAACGAATT+TGG 0.245348 8.2:+81152144 MS.gene39315:CDS
GCCAAATTCGTTACAGGTTC+AGG 0.246307 8.2:-81152145 None:intergenic
ATAAGGAAGGTGATTTAGTT+TGG 0.258281 8.2:+81150256 MS.gene39315:CDS
AGGACAAACTCCAAGAATTT+AGG 0.263093 8.2:-81152232 None:intergenic
ATGTTCATGTCTGATTCTTT+AGG 0.265462 8.2:-81149729 None:intergenic
AAAACAGTCTCTCCTTTCTT+AGG 0.292283 8.2:-81151182 None:intergenic
TTACAGGTAATAGCAGGTTT+TGG 0.310515 8.2:+81150198 MS.gene39315:intron
AGATGTGCCAAATTCGTTAC+AGG 0.319604 8.2:-81152151 None:intergenic
TAAGGAAGGTGATTTAGTTT+GGG 0.330541 8.2:+81150257 MS.gene39315:CDS
AAGTAAATATCAATGCCTTC+AGG 0.336754 8.2:-81152019 None:intergenic
ATCAGGACATCCTGATTATA+AGG 0.342738 8.2:+81150239 MS.gene39315:CDS
GGTGTATGCAAGAGGATTAA+TGG 0.357458 8.2:-81149871 None:intergenic
GTCCCACTTTCCTACTATAC+TGG 0.376088 8.2:+81150351 MS.gene39315:CDS
TAGTTTGGGGATTCTGCAAA+TGG 0.386130 8.2:+81150271 MS.gene39315:CDS
TTCATGAGATTCCTCATGAA+TGG 0.393169 8.2:-81149831 None:intergenic
AAGAATAAGTTTGGATTTGA+CGG 0.398129 8.2:+81151791 MS.gene39315:CDS
AAGCTTTAACTTACAGATTG+AGG 0.403200 8.2:-81149894 None:intergenic
AAATCACCTTCCTTATAATC+AGG 0.409142 8.2:-81150249 None:intergenic
TGAAAAGTATTTGAGAAGAA+AGG 0.413493 8.2:-81150311 None:intergenic
TCCTACTATACTGGAATTCT+CGG 0.425528 8.2:+81150360 MS.gene39315:CDS
GGTGCAGTCGGTCAACTTGT+TGG 0.439651 8.2:+81151221 MS.gene39315:CDS
CCAGCATAAGCAGTTATTCC+TGG 0.442475 8.2:-81151140 None:intergenic
GTGTCTAAAGTCCTTGAATC+AGG 0.445040 8.2:+81150222 MS.gene39315:CDS
GTGTATGCAAGAGGATTAAT+GGG 0.451553 8.2:-81149870 None:intergenic
CTGACAGGATGTTATGTTGT+AGG 0.455877 8.2:+81151257 MS.gene39315:CDS
TGTTATGTTGTAGGAAGTGC+TGG 0.456488 8.2:+81151266 MS.gene39315:CDS
AATCAGGATGTCCTGATTCA+AGG 0.467897 8.2:-81150233 None:intergenic
AATGGTCCTGCAGCATTGAT+TGG 0.469066 8.2:+81152313 MS.gene39315:CDS
GATATTTACTTTGAGAATGT+TGG 0.469382 8.2:+81152031 MS.gene39315:CDS
CAACATTGCGACCACTATAC+AGG 0.474009 8.2:-81152336 None:intergenic
AGCTTTAACTTACAGATTGA+GGG 0.474523 8.2:-81149893 None:intergenic
TCTTTGAACACAGGTATGCC+AGG 0.489073 8.2:+81151122 MS.gene39315:intron
CACAAGCAGGTATGCGGCCA+TGG 0.491073 8.2:-81152093 None:intergenic
CAGTAATTACAGGTAATAGC+AGG 0.502936 8.2:+81150192 MS.gene39315:intron
ACCGAGAATTCCAGTATAGT+AGG 0.503877 8.2:-81150361 None:intergenic
TTCAAAGCTACATCGAGGTC+AGG 0.519164 8.2:-81151836 None:intergenic
CCAGGAATAACTGCTTATGC+TGG 0.521588 8.2:+81151140 MS.gene39315:CDS
ATTTACTTTGAGAATGTTGG+AGG 0.524827 8.2:+81152034 MS.gene39315:CDS
GGTCAATTCGCTAAACTGAC+AGG 0.527324 8.2:+81151242 MS.gene39315:CDS
ATTCCAGTATAGTAGGAAAG+TGG 0.530249 8.2:-81150354 None:intergenic
ATAACTGAGGGTCTTGAGAA+TGG 0.532568 8.2:+81152295 MS.gene39315:CDS
ACCTCGATGTAGCTTTGAAG+AGG 0.533703 8.2:+81151840 MS.gene39315:CDS
ATACTGAAGGACTATGTGTC+TGG 0.534384 8.2:+81149702 MS.gene39315:CDS
CAAATGGGAAGAGTACAGTT+TGG 0.537330 8.2:+81150287 MS.gene39315:CDS
AGTAAATATCAATGCCTTCA+GGG 0.538437 8.2:-81152018 None:intergenic
TATGCTGGTTTCTTTGAACT+AGG 0.545755 8.2:+81151155 MS.gene39315:CDS
TACAGGCCAATCAATGCTGC+AGG 0.549132 8.2:-81152319 None:intergenic
TCAGCTGCCTCTGGTGCAGT+CGG 0.551705 8.2:+81151209 MS.gene39315:CDS
TCCTCCCTCATATCAGAGAC+GGG 0.552336 8.2:+81152251 MS.gene39315:CDS
AAGGAAGGTGATTTAGTTTG+GGG 0.554385 8.2:+81150258 MS.gene39315:CDS
GTCCTCCCTCATATCAGAGA+CGG 0.557651 8.2:+81152250 MS.gene39315:CDS
GAACTAGGCAGTCCTAAGAA+AGG 0.566199 8.2:+81151170 MS.gene39315:CDS
CATATATAAGCGGATTCGAA+TGG 0.569235 8.2:+81152174 MS.gene39315:CDS
GCATTGATTGGCCTGTATAG+TGG 0.570454 8.2:+81152325 MS.gene39315:CDS
CTTCTGAATATGAGAGTCCA+TGG 0.570985 8.2:+81152076 MS.gene39315:CDS
CTGTATAGTGGTCGCAATGT+TGG 0.571188 8.2:+81152337 MS.gene39315:CDS
TATAAGCGGATTCGAATGGA+AGG 0.574885 8.2:+81152178 MS.gene39315:CDS
GGACATCCTGATTATAAGGA+AGG 0.575310 8.2:+81150243 MS.gene39315:CDS
AAGTGCTGGAAGTAAAGAGA+AGG 0.576759 8.2:+81151280 MS.gene39315:CDS
AGTTTGGGGATTCTGCAAAT+GGG 0.577655 8.2:+81150272 MS.gene39315:CDS
TGACGGAGGTTTCAACTACA+AGG 0.579141 8.2:+81151808 MS.gene39315:CDS
TTCCAGTATAGTAGGAAAGT+GGG 0.584748 8.2:-81150353 None:intergenic
TGTGAGATCATTCCACAAGC+AGG 0.587370 8.2:-81152106 None:intergenic
CAAATCAGGCACTTCCCTGA+AGG 0.588407 8.2:+81152004 MS.gene39315:intron
CATGGCCGCATACCTGCTTG+TGG 0.591190 8.2:+81152094 MS.gene39315:CDS
AATAAGTTTGGATTTGACGG+AGG 0.599765 8.2:+81151794 MS.gene39315:CDS
GCTTTAACTTACAGATTGAG+GGG 0.600804 8.2:-81149892 None:intergenic
GGATTAATGGGAGCTCCTTG+TGG 0.608435 8.2:-81149858 None:intergenic
TGGCACATCTCATATATAAG+CGG 0.622685 8.2:+81152164 MS.gene39315:CDS
GATTGAGGGGTGTATGCAAG+AGG 0.633379 8.2:-81149879 None:intergenic
TCCCGTCTCTGATATGAGGG+AGG 0.638712 8.2:-81152252 None:intergenic
AGAATATCATTGGAACCTTG+TGG 0.639489 8.2:-81149780 None:intergenic
ATTACTCTTAAGCTTCCACA+AGG 0.646103 8.2:+81149765 MS.gene39315:CDS
TGTCTTGTGATCCATTCATG+AGG 0.654206 8.2:+81149820 MS.gene39315:CDS
TCATTCCACAAGCAGGTATG+CGG 0.655597 8.2:-81152099 None:intergenic
TACCAAACATGGCACAAGTG+AGG 0.656499 8.2:+81149667 None:intergenic
AAGTTGACCGACTGCACCAG+AGG 0.660264 8.2:-81151216 None:intergenic
ATAAGCGGATTCGAATGGAA+GGG 0.669316 8.2:+81152179 MS.gene39315:CDS
GAACAAGCAAGTGATACTGA+AGG 0.679731 8.2:+81149689 MS.gene39315:CDS
TCGCAATGTTGGTAAACAAG+TGG 0.707437 8.2:+81152348 MS.gene39315:CDS
ACCTCTTCAAAGCTACATCG+AGG 0.730475 8.2:-81151841 None:intergenic
AATCTCATGAACAAACCACA+AGG 0.737957 8.2:+81149843 MS.gene39315:CDS
TATGTTGAAGACATAACTGA+GGG 0.741574 8.2:+81152283 MS.gene39315:CDS
GTATGTTGAAGACATAACTG+AGG 0.767481 8.2:+81152282 MS.gene39315:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATTATATATACAAATA+AGG - chr8.2:81151520-81151539 None:intergenic 10.0%
!! CATAAGTTTATAAATTATAA+TGG - chr8.2:81151929-81151948 None:intergenic 10.0%
!!! TTTCAATTTATATTGATTTA+TGG + chr8.2:81150397-81150416 MS.gene39315:intron 10.0%
!!! TTTTATTTTATTTTTTGGAT+AGG - chr8.2:81151482-81151501 None:intergenic 10.0%
!! TTATATATACAAATAAGGAA+CGG - chr8.2:81151515-81151534 None:intergenic 15.0%
!!! AACTACTGTATTTTATTATT+CGG - chr8.2:81151960-81151979 None:intergenic 15.0%
!!! ATATAATGTATACAGTTTTA+TGG + chr8.2:81151529-81151548 MS.gene39315:intron 15.0%
!!! TATAATTTTTCAGTAATTAC+AGG + chr8.2:81150182-81150201 MS.gene39315:intron 15.0%
!! AAAATTTGCATAATGAATTG+TGG + chr8.2:81151654-81151673 MS.gene39315:intron 20.0%
!! AAATTTGACATATACTCAAA+AGG - chr8.2:81149931-81149950 None:intergenic 20.0%
!! AATGAGAACATTAAAAACTT+AGG - chr8.2:81151003-81151022 None:intergenic 20.0%
!! AATTTGACATATACTCAAAA+GGG - chr8.2:81149930-81149949 None:intergenic 20.0%
!! AGATAAGAAAAGATACTTTA+AGG - chr8.2:81149957-81149976 None:intergenic 20.0%
!! CAATTATGAAAAGAAGAAAA+TGG - chr8.2:81150905-81150924 None:intergenic 20.0%
!! CAGTAAAAAAAAACTATTTC+AGG - chr8.2:81151704-81151723 None:intergenic 20.0%
!! TATATATACAAATAAGGAAC+GGG - chr8.2:81151514-81151533 None:intergenic 20.0%
!! TATCACTATCATTAAACAAT+AGG + chr8.2:81150783-81150802 MS.gene39315:intron 20.0%
!! TCTTAGCAAATTAAAGAAAT+TGG + chr8.2:81150043-81150062 MS.gene39315:intron 20.0%
!!! AATTGAAGGTTATTTAGAAT+TGG + chr8.2:81150920-81150939 MS.gene39315:intron 20.0%
!!! ATTTTTTAGCAGAATATCAT+TGG - chr8.2:81149793-81149812 None:intergenic 20.0%
!!! GGCGATTTTATTTTATTTTT+TGG - chr8.2:81151487-81151506 None:intergenic 20.0%
!!! TATTGTTTAATGATAGTGAT+AGG - chr8.2:81150784-81150803 None:intergenic 20.0%
!!! TGTTTTGCTTTTTTAACATA+TGG + chr8.2:81151091-81151110 MS.gene39315:intron 20.0%
!!! TTTCTTCTTTTCATAATTGA+AGG + chr8.2:81150906-81150925 MS.gene39315:intron 20.0%
!!! TTTTGTTTAATGAGTAAGTT+AGG + chr8.2:81150499-81150518 MS.gene39315:intron 20.0%
! AAGAATAAGTTTGGATTTGA+CGG + chr8.2:81151791-81151810 MS.gene39315:CDS 25.0%
! ATAAAGGTTAAATAAGTCGA+AGG + chr8.2:81151382-81151401 MS.gene39315:intron 25.0%
! CATTAAACAATAGGTATAGT+AGG + chr8.2:81150792-81150811 MS.gene39315:intron 25.0%
! GAAAAGAAGAAAATGGAAAA+GGG - chr8.2:81150898-81150917 None:intergenic 25.0%
! GTTAAAAAAGCAAAACAGAA+TGG - chr8.2:81151088-81151107 None:intergenic 25.0%
! TGAAAAGAAGAAAATGGAAA+AGG - chr8.2:81150899-81150918 None:intergenic 25.0%
! TTTACCGAAATATACAAATC+AGG + chr8.2:81151990-81152009 MS.gene39315:intron 25.0%
!! AAAAAAACTATTTCAGGTCT+TGG - chr8.2:81151698-81151717 None:intergenic 25.0%
!! GATATTTACTTTGAGAATGT+TGG + chr8.2:81152031-81152050 MS.gene39315:CDS 25.0%
!!! ATGGTTCTAATGTACAAATT+TGG + chr8.2:81151548-81151567 MS.gene39315:intron 25.0%
!!! ATGTTTTTTTTACAATCAGG+TGG + chr8.2:81151760-81151779 MS.gene39315:intron 25.0%
!!! GATCTTTTGAAGAATAAGTT+TGG + chr8.2:81151782-81151801 MS.gene39315:CDS 25.0%
!!! TGAAAAGTATTTGAGAAGAA+AGG - chr8.2:81150314-81150333 None:intergenic 25.0%
!!! TGCATGTTTTTTTTACAATC+AGG + chr8.2:81151757-81151776 MS.gene39315:intron 25.0%
AAATCACCTTCCTTATAATC+AGG - chr8.2:81150252-81150271 None:intergenic 30.0%
AAGTAAATATCAATGCCTTC+AGG - chr8.2:81152022-81152041 None:intergenic 30.0%
ACATGCATTCAAACAAAAGA+AGG - chr8.2:81151744-81151763 None:intergenic 30.0%
AGTAAATATCAATGCCTTCA+GGG - chr8.2:81152021-81152040 None:intergenic 30.0%
ATAAGGAAGGTGATTTAGTT+TGG + chr8.2:81150256-81150275 MS.gene39315:CDS 30.0%
ATAAGTCGAAGGAGTTATAA+AGG + chr8.2:81151393-81151412 MS.gene39315:intron 30.0%
ATGTATCTTCCATGACAAAA+TGG - chr8.2:81150829-81150848 None:intergenic 30.0%
ATGTTCATGTCTGATTCTTT+AGG - chr8.2:81149732-81149751 None:intergenic 30.0%
ATTCAAACAAAAGAAGGACT+AGG - chr8.2:81151738-81151757 None:intergenic 30.0%
CAAACACTAATAATCAGCTA+CGG - chr8.2:81150478-81150497 None:intergenic 30.0%
CAGTATCAATGTAGAGAAAA+TGG - chr8.2:81150741-81150760 None:intergenic 30.0%
TATGTTGAAGACATAACTGA+GGG + chr8.2:81152283-81152302 MS.gene39315:CDS 30.0%
TCACCTAAATCCTAAATTCT+TGG + chr8.2:81152222-81152241 MS.gene39315:CDS 30.0%
TCGTATCAATAAAACTTGCA+GGG + chr8.2:81150704-81150723 MS.gene39315:intron 30.0%
TTCGTATCAATAAAACTTGC+AGG + chr8.2:81150703-81150722 MS.gene39315:intron 30.0%
! AAGCTTTAACTTACAGATTG+AGG - chr8.2:81149897-81149916 None:intergenic 30.0%
! ACTCCAAGAATTTAGGATTT+AGG - chr8.2:81152228-81152247 None:intergenic 30.0%
! ACTTTTCAAAATTGAGCACA+CGG + chr8.2:81150326-81150345 MS.gene39315:CDS 30.0%
! AGCTTTAACTTACAGATTGA+GGG - chr8.2:81149896-81149915 None:intergenic 30.0%
! AGTGCCTGATTTGTATATTT+CGG - chr8.2:81151997-81152016 None:intergenic 30.0%
! ATTTACTTTGAGAATGTTGG+AGG + chr8.2:81152034-81152053 MS.gene39315:CDS 30.0%
! GTTGAGCTAGTTTGATATAA+AGG + chr8.2:81151366-81151385 MS.gene39315:intron 30.0%
! TAAGGAAGGTGATTTAGTTT+GGG + chr8.2:81150257-81150276 MS.gene39315:CDS 30.0%
! TACAATTTTCTCCTTCACTA+GGG - chr8.2:81151432-81151451 None:intergenic 30.0%
! TTACAATTTTCTCCTTCACT+AGG - chr8.2:81151433-81151452 None:intergenic 30.0%
! TTTTTCCCTCCATTTTCTTT+TGG - chr8.2:81151638-81151657 None:intergenic 30.0%
!! AAATGGAAAAGGGTTGATAA+AGG - chr8.2:81150888-81150907 None:intergenic 30.0%
AAAACAGTCTCTCCTTTCTT+AGG - chr8.2:81151185-81151204 None:intergenic 35.0%
AAACTAGCTCCTTCATGTAT+TGG + chr8.2:81150675-81150694 MS.gene39315:intron 35.0%
AATAAGTTTGGATTTGACGG+AGG + chr8.2:81151794-81151813 MS.gene39315:CDS 35.0%
AATCTCATGAACAAACCACA+AGG + chr8.2:81149843-81149862 MS.gene39315:CDS 35.0%
AGAATATCATTGGAACCTTG+TGG - chr8.2:81149783-81149802 None:intergenic 35.0%
AGGACAAACTCCAAGAATTT+AGG - chr8.2:81152235-81152254 None:intergenic 35.0%
ATCAGGACATCCTGATTATA+AGG + chr8.2:81150239-81150258 MS.gene39315:CDS 35.0%
ATTACTCTTAAGCTTCCACA+AGG + chr8.2:81149765-81149784 MS.gene39315:CDS 35.0%
ATTCCAGTATAGTAGGAAAG+TGG - chr8.2:81150357-81150376 None:intergenic 35.0%
CAGTAATTACAGGTAATAGC+AGG + chr8.2:81150192-81150211 MS.gene39315:intron 35.0%
CAGTCCTATTTATACTGCAT+AGG - chr8.2:81150582-81150601 None:intergenic 35.0%
CGAAGAAAACCAATACATGA+AGG - chr8.2:81150687-81150706 None:intergenic 35.0%
GTATGTTGAAGACATAACTG+AGG + chr8.2:81152282-81152301 MS.gene39315:CDS 35.0%
GTGTATGCAAGAGGATTAAT+GGG - chr8.2:81149873-81149892 None:intergenic 35.0%
TCCTACTATACTGGAATTCT+CGG + chr8.2:81150360-81150379 MS.gene39315:CDS 35.0%
TCCTATTTATACTGCATAGG+AGG - chr8.2:81150579-81150598 None:intergenic 35.0%
TCCTCCTATGCAGTATAAAT+AGG + chr8.2:81150575-81150594 MS.gene39315:intron 35.0%
TGGCACATCTCATATATAAG+CGG + chr8.2:81152164-81152183 MS.gene39315:CDS 35.0%
TTACCCTTGCCAAAAGAAAA+TGG + chr8.2:81151626-81151645 MS.gene39315:intron 35.0%
TTCATGAGATTCCTCATGAA+TGG - chr8.2:81149834-81149853 None:intergenic 35.0%
TTCCAGTATAGTAGGAAAGT+GGG - chr8.2:81150356-81150375 None:intergenic 35.0%
TTGATTTCAGTCTCATATGC+AGG + chr8.2:81150432-81150451 MS.gene39315:intron 35.0%
! ATTTTCTTTTGGCAAGGGTA+AGG - chr8.2:81151627-81151646 None:intergenic 35.0%
! CATATATAAGCGGATTCGAA+TGG + chr8.2:81152174-81152193 MS.gene39315:CDS 35.0%
! GCTTTAACTTACAGATTGAG+GGG - chr8.2:81149895-81149914 None:intergenic 35.0%
! TACAGGTAATAGCAGGTTTT+GGG + chr8.2:81150199-81150218 MS.gene39315:intron 35.0%
! TTACAGGTAATAGCAGGTTT+TGG + chr8.2:81150198-81150217 MS.gene39315:intron 35.0%
! TTTTCTTTTGGCAAGGGTAA+GGG - chr8.2:81151626-81151645 None:intergenic 35.0%
!! AAGGAAGGTGATTTAGTTTG+GGG + chr8.2:81150258-81150277 MS.gene39315:CDS 35.0%
!! AATTTAGTTTGTGCTGTGCA+TGG + chr8.2:81149979-81149998 MS.gene39315:intron 35.0%
!! TACAAATAAGGAACGGGTTA+TGG - chr8.2:81151508-81151527 None:intergenic 35.0%
!! TATGCTGGTTTCTTTGAACT+AGG + chr8.2:81151155-81151174 MS.gene39315:CDS 35.0%
AATCAGGATGTCCTGATTCA+AGG - chr8.2:81150236-81150255 None:intergenic 40.0%
ACCGAGAATTCCAGTATAGT+AGG - chr8.2:81150364-81150383 None:intergenic 40.0%
ACCTGAACCTGTAACGAATT+TGG + chr8.2:81152144-81152163 MS.gene39315:CDS 40.0%
AGAGAAGTTATGCAGAGATG+TGG - chr8.2:81150976-81150995 None:intergenic 40.0%
AGATGTGCCAAATTCGTTAC+AGG - chr8.2:81152154-81152173 None:intergenic 40.0%
AGTTTGGGGATTCTGCAAAT+GGG + chr8.2:81150272-81150291 MS.gene39315:CDS 40.0%
ATAACTGAGGGTCTTGAGAA+TGG + chr8.2:81152295-81152314 MS.gene39315:CDS 40.0%
ATACTGAAGGACTATGTGTC+TGG + chr8.2:81149702-81149721 MS.gene39315:CDS 40.0%
ATAGGTATAGTAGGCTGTAG+AGG + chr8.2:81150801-81150820 MS.gene39315:intron 40.0%
CACTAATAATCAGCTACGGT+TGG - chr8.2:81150474-81150493 None:intergenic 40.0%
CCTTGCCAAAAGAAAATGGA+GGG + chr8.2:81151630-81151649 MS.gene39315:intron 40.0%
CTGACAGGATGTTATGTTGT+AGG + chr8.2:81151257-81151276 MS.gene39315:CDS 40.0%
CTTCTGAATATGAGAGTCCA+TGG + chr8.2:81152076-81152095 MS.gene39315:CDS 40.0%
GAACAAGCAAGTGATACTGA+AGG + chr8.2:81149689-81149708 MS.gene39315:CDS 40.0%
GGACATCCTGATTATAAGGA+AGG + chr8.2:81150243-81150262 MS.gene39315:CDS 40.0%
GGTGTATGCAAGAGGATTAA+TGG - chr8.2:81149874-81149893 None:intergenic 40.0%
GTATTCTGCACTGAACAGTT+TGG + chr8.2:81151866-81151885 MS.gene39315:intron 40.0%
TAGTTTGGGGATTCTGCAAA+TGG + chr8.2:81150271-81150290 MS.gene39315:CDS 40.0%
TCGAAGGAGTTATAAAGGAC+CGG + chr8.2:81151398-81151417 MS.gene39315:intron 40.0%
TGTCTTGTGATCCATTCATG+AGG + chr8.2:81149820-81149839 MS.gene39315:CDS 40.0%
! ACAGGTAATAGCAGGTTTTG+GGG + chr8.2:81150200-81150219 MS.gene39315:intron 40.0%
! ATAAGCGGATTCGAATGGAA+GGG + chr8.2:81152179-81152198 MS.gene39315:CDS 40.0%
! ATATGCAGGCCTTATCTGTT+AGG + chr8.2:81150446-81150465 MS.gene39315:intron 40.0%
! ATTTTCCCGTCTCTGATATG+AGG - chr8.2:81152259-81152278 None:intergenic 40.0%
! CAAATGGGAAGAGTACAGTT+TGG + chr8.2:81150287-81150306 MS.gene39315:CDS 40.0%
! CCTCCATTTTCTTTTGGCAA+GGG - chr8.2:81151632-81151651 None:intergenic 40.0%
! GAGTAAGTTAGGTTAGCTGT+TGG + chr8.2:81150510-81150529 MS.gene39315:intron 40.0%
! GTAGAGGATCCATTTTGTCA+TGG + chr8.2:81150817-81150836 MS.gene39315:intron 40.0%
! GTGCGTTTTTCTTTGAACAC+AGG + chr8.2:81151113-81151132 MS.gene39315:intron 40.0%
! GTGTCTAAAGTCCTTGAATC+AGG + chr8.2:81150222-81150241 MS.gene39315:CDS 40.0%
! TATAAGCGGATTCGAATGGA+AGG + chr8.2:81152178-81152197 MS.gene39315:CDS 40.0%
! TCGCAATGTTGGTAAACAAG+TGG + chr8.2:81152348-81152367 MS.gene39315:CDS 40.0%
! TGTTATGTTGTAGGAAGTGC+TGG + chr8.2:81151266-81151285 MS.gene39315:CDS 40.0%
! TTTTCCCGTCTCTGATATGA+GGG - chr8.2:81152258-81152277 None:intergenic 40.0%
!! AAGTGCTGGAAGTAAAGAGA+AGG + chr8.2:81151280-81151299 MS.gene39315:CDS 40.0%
!! AGGGTTGATAAAGGCTAAAC+AGG - chr8.2:81150879-81150898 None:intergenic 40.0%
!! GACAGTCTTGTTGCAGAATT+AGG + chr8.2:81150601-81150620 MS.gene39315:intron 40.0%
ACCTCTTCAAAGCTACATCG+AGG - chr8.2:81151844-81151863 None:intergenic 45.0%
CAACATTGCGACCACTATAC+AGG - chr8.2:81152339-81152358 None:intergenic 45.0%
CCAGCATAAGCAGTTATTCC+TGG - chr8.2:81151143-81151162 None:intergenic 45.0%
CCAGGAATAACTGCTTATGC+TGG + chr8.2:81151140-81151159 MS.gene39315:CDS 45.0%
CCCTTGCCAAAAGAAAATGG+AGG + chr8.2:81151629-81151648 MS.gene39315:intron 45.0%
CGAAGGAGTTATAAAGGACC+GGG + chr8.2:81151399-81151418 MS.gene39315:intron 45.0%
CTGTATAGTGGTCGCAATGT+TGG + chr8.2:81152337-81152356 MS.gene39315:CDS 45.0%
CTTCACTAGGGTTTAAACCC+CGG - chr8.2:81151420-81151439 None:intergenic 45.0%
GAACTAGGCAGTCCTAAGAA+AGG + chr8.2:81151170-81151189 MS.gene39315:CDS 45.0%
GAAGGAGTTATAAAGGACCG+GGG + chr8.2:81151400-81151419 MS.gene39315:intron 45.0%
GAGTATGCTCTAGTGAGAAG+AGG + chr8.2:81150652-81150671 MS.gene39315:intron 45.0%
GCCAAATTCGTTACAGGTTC+AGG - chr8.2:81152148-81152167 None:intergenic 45.0%
GGTCAATTCGCTAAACTGAC+AGG + chr8.2:81151242-81151261 MS.gene39315:CDS 45.0%
GTCCCACTTTCCTACTATAC+TGG + chr8.2:81150351-81150370 MS.gene39315:CDS 45.0%
GTTGGTGTACTCTGTTAGCT+AGG + chr8.2:81150528-81150547 MS.gene39315:intron 45.0%
TAGTATGTCACCGTCACCTT+GGG + chr8.2:81151334-81151353 MS.gene39315:intron 45.0%
TCATTCCACAAGCAGGTATG+CGG - chr8.2:81152102-81152121 None:intergenic 45.0%
TCTTTGAACACAGGTATGCC+AGG + chr8.2:81151122-81151141 MS.gene39315:intron 45.0%
TGACGGAGGTTTCAACTACA+AGG + chr8.2:81151808-81151827 MS.gene39315:CDS 45.0%
TGTGAGATCATTCCACAAGC+AGG - chr8.2:81152109-81152128 None:intergenic 45.0%
TTAGTATGTCACCGTCACCT+TGG + chr8.2:81151333-81151352 MS.gene39315:intron 45.0%
TTCAAAGCTACATCGAGGTC+AGG - chr8.2:81151839-81151858 None:intergenic 45.0%
! AAGGTGACGGTGACATACTA+AGG - chr8.2:81151334-81151353 None:intergenic 45.0%
! CCCTCCATTTTCTTTTGGCA+AGG - chr8.2:81151633-81151652 None:intergenic 45.0%
! CGGTTGGTTCCTAACAGATA+AGG - chr8.2:81150458-81150477 None:intergenic 45.0%
!! AATGGTCCTGCAGCATTGAT+TGG + chr8.2:81152313-81152332 MS.gene39315:CDS 45.0%
!! ACCTCGATGTAGCTTTGAAG+AGG + chr8.2:81151840-81151859 MS.gene39315:CDS 45.0%
!! GCATTGATTGGCCTGTATAG+TGG + chr8.2:81152325-81152344 MS.gene39315:CDS 45.0%
!! GTTTTTGTTTCAGCTGCCTC+TGG + chr8.2:81151200-81151219 MS.gene39315:CDS 45.0%
AGTATGTCACCGTCACCTTG+GGG + chr8.2:81151335-81151354 MS.gene39315:intron 50.0%
CAAATCAGGCACTTCCCTGA+AGG + chr8.2:81152004-81152023 MS.gene39315:intron 50.0%
CGGGGTTTAAACCCTAGTGA+AGG + chr8.2:81151418-81151437 MS.gene39315:intron 50.0%
GGATTAATGGGAGCTCCTTG+TGG - chr8.2:81149861-81149880 None:intergenic 50.0%
GTCCTCCCTCATATCAGAGA+CGG + chr8.2:81152250-81152269 MS.gene39315:CDS 50.0%
TACAGGCCAATCAATGCTGC+AGG - chr8.2:81152322-81152341 None:intergenic 50.0%
TCCTCCCTCATATCAGAGAC+GGG + chr8.2:81152251-81152270 MS.gene39315:CDS 50.0%
! GATTGAGGGGTGTATGCAAG+AGG - chr8.2:81149882-81149901 None:intergenic 50.0%
AAGTTGACCGACTGCACCAG+AGG - chr8.2:81151219-81151238 None:intergenic 55.0%
CTACCCAATCCCCAAGGTGA+CGG - chr8.2:81151347-81151366 None:intergenic 55.0%
GCTCAACTACCCAATCCCCA+AGG - chr8.2:81151353-81151372 None:intergenic 55.0%
GGTGCAGTCGGTCAACTTGT+TGG + chr8.2:81151221-81151240 MS.gene39315:CDS 55.0%
TCACCGTCACCTTGGGGATT+GGG + chr8.2:81151341-81151360 MS.gene39315:intron 55.0%
TCCCGTCTCTGATATGAGGG+AGG - chr8.2:81152255-81152274 None:intergenic 55.0%
CACAAGCAGGTATGCGGCCA+TGG - chr8.2:81152096-81152115 None:intergenic 60.0%
CATGGCCGCATACCTGCTTG+TGG + chr8.2:81152094-81152113 MS.gene39315:CDS 60.0%
GTCACCGTCACCTTGGGGAT+TGG + chr8.2:81151340-81151359 MS.gene39315:intron 60.0%
TCAGCTGCCTCTGGTGCAGT+CGG + chr8.2:81151209-81151228 MS.gene39315:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 81149675 81152390 81149675 ID=MS.gene39315
chr8.2 mRNA 81149675 81152390 81149675 ID=MS.gene39315.t1;Parent=MS.gene39315
chr8.2 exon 81149675 81149902 81149675 ID=MS.gene39315.t1.exon1;Parent=MS.gene39315.t1
chr8.2 CDS 81149675 81149902 81149675 ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1
chr8.2 exon 81150204 81150381 81150204 ID=MS.gene39315.t1.exon2;Parent=MS.gene39315.t1
chr8.2 CDS 81150204 81150381 81150204 ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1
chr8.2 exon 81151135 81151301 81151135 ID=MS.gene39315.t1.exon3;Parent=MS.gene39315.t1
chr8.2 CDS 81151135 81151301 81151135 ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1
chr8.2 exon 81151779 81151861 81151779 ID=MS.gene39315.t1.exon4;Parent=MS.gene39315.t1
chr8.2 CDS 81151779 81151861 81151779 ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1
chr8.2 exon 81152012 81152390 81152012 ID=MS.gene39315.t1.exon5;Parent=MS.gene39315.t1
chr8.2 CDS 81152012 81152390 81152012 ID=cds.MS.gene39315.t1;Parent=MS.gene39315.t1
Gene Sequence

>MS.gene39315

ATGGCACAAGTGAGGAACAAGCAAGTGATACTGAAGGACTATGTGTCTGGTTTTCCTAAAGAATCAGACATGAACATTGTTGATAGTACAATTACTCTTAAGCTTCCACAAGGTTCCAATGATATTCTGCTAAAAAATCTATACTTGTCTTGTGATCCATTCATGAGGAATCTCATGAACAAACCACAAGGAGCTCCCATTAATCCTCTTGCATACACCCCTCAATCTGTAAGTTAAAGCTTATGTGAATAGCCCTTTTGAGTATATGTCAAATTTGATCCTTAAAGTATCTTTTCTTATCTGTAATTTAGTTTGTGCTGTGCATGGATCAACATGTTAGTAAGTTTACAATTTAGATATGATAAATTTCTTAGCAAATTAAAGAAATTGGAATTTTGCAGTTTATGTGATTAGCTTTTCAGTTTTATTCTTAAATCAAGATTGAAACTAATCAAAGAATAATCTACAAAGTTGAGTTTGAAACAATATTTTGTTTATGTAGCTTCTTATAATTTTTCAGTAATTACAGGTAATAGCAGGTTTTGGGGTGTCTAAAGTCCTTGAATCAGGACATCCTGATTATAAGGAAGGTGATTTAGTTTGGGGATTCTGCAAATGGGAAGAGTACAGTTTGGTCCTTTCTTCTCAAATACTTTTCAAAATTGAGCACACGGATGTCCCACTTTCCTACTATACTGGAATTCTCGGTATGTATTCAACAATTTCAATTTATATTGATTTATGGTAAAGAATGCACTTGATTTCAGTCTCATATGCAGGCCTTATCTGTTAGGAACCAACCGTAGCTGATTATTAGTGTTTGTTTTTGTTTAATGAGTAAGTTAGGTTAGCTGTTGGTGTACTCTGTTAGCTAGGTTTGCTGTTAGTGTAATCTGTTAGTCCTCCTATGCAGTATAAATAGGACTGACAGTCTTGTTGCAGAATTAGGAAATCATTTACTTCAAGAGTGTAAACTAGAGTATGCTCTAGTGAGAAGAGGAAACTAGCTCCTTCATGTATTGGTTTTCTTCGTATCAATAAAACTTGCAGGGAAGAATAAACTCCATTTTCTCTACATTGATACTGCAAGAACTAATCAATTCGTACCTATCACTATCATTAAACAATAGGTATAGTAGGCTGTAGAGGATCCATTTTGTCATGGAAGATACATATTGTGTGATTGTTGTATAGTTGTCTGCCTGTTTAGCCTTTATCAACCCTTTTCCATTTTCTTCTTTTCATAATTGAAGGTTATTTAGAATTGGTTTCTCATTGCTTTTAGACATCTGTTACAGCCACATCTCTGCATAACTTCTCTCTAGCCTAAGTTTTTAATGTTCTCATTTATGTTTTATTTACAAATGATATTGTACAACATATGTCATTGATGACTCGCATATTTTTCTGCCATTCTGTTTTGCTTTTTTAACATATGGTGCGTTTTTCTTTGAACACAGGTATGCCAGGAATAACTGCTTATGCTGGTTTCTTTGAACTAGGCAGTCCTAAGAAAGGAGAGACTGTTTTTGTTTCAGCTGCCTCTGGTGCAGTCGGTCAACTTGTTGGTCAATTCGCTAAACTGACAGGATGTTATGTTGTAGGAAGTGCTGGAAGTAAAGAGAAGGTGTTTTTGTAATTGCTAAGTTTTATGTTCCTTAGTATGTCACCGTCACCTTGGGGATTGGGTAGTTGAGCTAGTTTGATATAAAGGTTAAATAAGTCGAAGGAGTTATAAAGGACCGGGGTTTAAACCCTAGTGAAGGAGAAAATTGTAAGATAACAACTAATATACTATCATTTGCCTATCCAAAAAATAAAATAAAATCGCCATAACCCGTTCCTTATTTGTATATATAATGTATACAGTTTTATGGTTCTAATGTACAAATTTGGTTATAACGTGTACTTTATTTTATGTATCAGTATTTGTACTACAATATCAACTCCCTTACCCTTGCCAAAAGAAAATGGAGGGAAAAATTTGCATAATGAATTGTGGCATAGATTAAAAATTGTACCAAGACCTGAAATAGTTTTTTTTTACTGTGTTAAAAAAACCTAGTCCTTCTTTTGTTTGAATGCATGTTTTTTTTACAATCAGGTGGATCTTTTGAAGAATAAGTTTGGATTTGACGGAGGTTTCAACTACAAGGAAGAGCCTGACCTCGATGTAGCTTTGAAGAGGTTTGTATTCTGCACTGAACAGTTTGGTCATACAAAAAGATTTAGATGTTACTTCGTTGCGTAGCCATTATAATTTATAAACTTATGTTACAGTGCCGAATAATAAAATACAGTAGTTGCTAATGTATTTTACCGAAATATACAAATCAGGCACTTCCCTGAAGGCATTGATATTTACTTTGAGAATGTTGGAGGAAAGACACTTGATGCAGTACTTCTGAATATGAGAGTCCATGGCCGCATACCTGCTTGTGGAATGATCTCACAGTACAATCTTACGCAACCTGAACCTGTAACGAATTTGGCACATCTCATATATAAGCGGATTCGAATGGAAGGGTTTAACAGTGCTGATTTCTTTCACCTAAATCCTAAATTCTTGGAGTTTGTCCTCCCTCATATCAGAGACGGGAAAATTGTGTATGTTGAAGACATAACTGAGGGTCTTGAGAATGGTCCTGCAGCATTGATTGGCCTGTATAGTGGTCGCAATGTTGGTAAACAAGTGGTTGTCGTTGCTCGTGAATAG

Protein sequence

>MS.gene39315.t1

MAQVRNKQVILKDYVSGFPKESDMNIVDSTITLKLPQGSNDILLKNLYLSCDPFMRNLMNKPQGAPINPLAYTPQSVIAGFGVSKVLESGHPDYKEGDLVWGFCKWEEYSLVLSSQILFKIEHTDVPLSYYTGILGMPGITAYAGFFELGSPKKGETVFVSAASGAVGQLVGQFAKLTGCYVVGSAGSKEKVDLLKNKFGFDGGFNYKEEPDLDVALKRHFPEGIDIYFENVGGKTLDAVLLNMRVHGRIPACGMISQYNLTQPEPVTNLAHLIYKRIRMEGFNSADFFHLNPKFLEFVLPHIRDGKIVYVEDITEGLENGPAALIGLYSGRNVGKQVVVVARE