Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020227.t1 | ACJ85436.1 | 93.6 | 344 | 13 | 1 | 1 | 335 | 1 | 344 | 4.40E-182 | 647.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020227.t1 | Q39173 | 69.2 | 341 | 93 | 4 | 6 | 335 | 4 | 343 | 4.5e-135 | 482.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020227.t1 | B7FL02 | 93.6 | 344 | 13 | 1 | 1 | 335 | 1 | 344 | 3.2e-182 | 647.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54434 | MS.gene020227 | PPI |
| MS.gene020239 | MS.gene020227 | PPI |
| MS.gene41778 | MS.gene020227 | PPI |
| MS.gene39314 | MS.gene020227 | PPI |
| MS.gene39315 | MS.gene020227 | PPI |
| MS.gene022721 | MS.gene020227 | PPI |
| MS.gene54433 | MS.gene020227 | PPI |
| MS.gene042467 | MS.gene020227 | PPI |
| MS.gene08162 | MS.gene020227 | PPI |
| MS.gene020077 | MS.gene020227 | PPI |
| MS.gene069341 | MS.gene020227 | PPI |
| MS.gene022736 | MS.gene020227 | PPI |
| MS.gene020033 | MS.gene020227 | PPI |
| MS.gene022735 | MS.gene020227 | PPI |
| MS.gene022738 | MS.gene020227 | PPI |
| MS.gene020225 | MS.gene020227 | PPI |
| MS.gene020227 | MS.gene022736 | PPI |
| MS.gene020076 | MS.gene020227 | PPI |
| MS.gene39327 | MS.gene020227 | PPI |
| MS.gene022737 | MS.gene020227 | PPI |
| MS.gene45375 | MS.gene020227 | PPI |
| MS.gene39312 | MS.gene020227 | PPI |
| MS.gene022722 | MS.gene020227 | PPI |
| MS.gene97874 | MS.gene020227 | PPI |
| MS.gene020226 | MS.gene020227 | PPI |
| MS.gene020227 | MS.gene022735 | PPI |
| MS.gene020228 | MS.gene020227 | PPI |
| MS.gene020227 | MS.gene45375 | PPI |
| MS.gene39313 | MS.gene020227 | PPI |
| MS.gene39326 | MS.gene020227 | PPI |
| MS.gene067859 | MS.gene020227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020227.t1 | MTR_8g010000 | 91.343 | 335 | 13 | 1 | 1 | 335 | 1 | 319 | 0.0 | 619 |
| MS.gene020227.t1 | MTR_8g010030 | 83.140 | 344 | 49 | 1 | 1 | 335 | 1 | 344 | 0.0 | 598 |
| MS.gene020227.t1 | MTR_8g009820 | 79.420 | 345 | 59 | 3 | 1 | 335 | 60 | 402 | 0.0 | 560 |
| MS.gene020227.t1 | MTR_8g010020 | 81.105 | 344 | 24 | 2 | 1 | 335 | 1 | 312 | 0.0 | 556 |
| MS.gene020227.t1 | MTR_8g009980 | 75.072 | 345 | 75 | 3 | 1 | 335 | 1 | 344 | 0.0 | 541 |
| MS.gene020227.t1 | MTR_8g009840 | 77.581 | 339 | 63 | 4 | 1 | 329 | 1 | 336 | 0.0 | 541 |
| MS.gene020227.t1 | MTR_8g009830 | 75.072 | 345 | 73 | 4 | 1 | 335 | 1 | 342 | 0.0 | 532 |
| MS.gene020227.t1 | MTR_4g082970 | 63.450 | 342 | 114 | 3 | 4 | 335 | 10 | 350 | 3.93e-151 | 429 |
| MS.gene020227.t1 | MTR_7g406860 | 56.232 | 345 | 140 | 3 | 1 | 335 | 3 | 346 | 7.84e-134 | 385 |
| MS.gene020227.t1 | MTR_8g007325 | 76.364 | 220 | 40 | 3 | 1 | 210 | 1 | 218 | 8.18e-118 | 339 |
| MS.gene020227.t1 | MTR_0011s0280 | 43.064 | 346 | 183 | 3 | 3 | 335 | 2 | 346 | 2.42e-100 | 300 |
| MS.gene020227.t1 | MTR_2g088190 | 38.841 | 345 | 193 | 6 | 4 | 332 | 5 | 347 | 5.90e-73 | 229 |
| MS.gene020227.t1 | MTR_2g088220 | 39.067 | 343 | 195 | 5 | 4 | 332 | 6 | 348 | 6.80e-69 | 219 |
| MS.gene020227.t1 | MTR_2g088200 | 36.494 | 348 | 198 | 7 | 4 | 332 | 5 | 348 | 3.46e-62 | 202 |
| MS.gene020227.t1 | MTR_5g095030 | 55.556 | 126 | 56 | 0 | 208 | 333 | 11 | 136 | 2.35e-46 | 154 |
| MS.gene020227.t1 | MTR_4g086410 | 35.407 | 209 | 118 | 5 | 139 | 332 | 416 | 622 | 2.63e-23 | 101 |
| MS.gene020227.t1 | MTR_4g086400 | 33.649 | 211 | 119 | 6 | 139 | 332 | 276 | 482 | 5.61e-22 | 96.7 |
| MS.gene020227.t1 | MTR_4g086400 | 33.649 | 211 | 119 | 6 | 139 | 332 | 416 | 622 | 8.84e-22 | 96.7 |
| MS.gene020227.t1 | MTR_5g095020 | 49.123 | 57 | 28 | 1 | 29 | 85 | 6 | 61 | 8.66e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020227.t1 | AT5G16990 | 69.208 | 341 | 93 | 4 | 6 | 335 | 4 | 343 | 2.58e-174 | 487 |
| MS.gene020227.t1 | AT5G16970 | 68.129 | 342 | 96 | 4 | 6 | 335 | 5 | 345 | 1.55e-173 | 485 |
| MS.gene020227.t1 | AT5G17000 | 68.421 | 342 | 95 | 4 | 6 | 335 | 5 | 345 | 4.41e-172 | 481 |
| MS.gene020227.t1 | AT3G03080 | 67.630 | 346 | 98 | 4 | 2 | 335 | 7 | 350 | 2.65e-170 | 477 |
| MS.gene020227.t1 | AT1G26320 | 67.151 | 344 | 100 | 4 | 4 | 335 | 9 | 351 | 3.31e-165 | 464 |
| MS.gene020227.t1 | AT1G26320 | 67.552 | 339 | 102 | 4 | 4 | 335 | 9 | 346 | 6.00e-164 | 461 |
| MS.gene020227.t1 | AT5G37980 | 64.244 | 344 | 107 | 5 | 6 | 335 | 12 | 353 | 1.19e-160 | 453 |
| MS.gene020227.t1 | AT5G37940 | 62.391 | 343 | 115 | 4 | 6 | 335 | 12 | 353 | 9.13e-157 | 443 |
| MS.gene020227.t1 | AT5G16960 | 62.609 | 345 | 116 | 4 | 1 | 333 | 1 | 344 | 2.20e-156 | 442 |
| MS.gene020227.t1 | AT5G16960 | 62.609 | 345 | 116 | 4 | 1 | 333 | 1 | 344 | 2.20e-156 | 442 |
| MS.gene020227.t1 | AT5G38000 | 61.516 | 343 | 116 | 5 | 6 | 334 | 12 | 352 | 5.95e-153 | 433 |
| MS.gene020227.t1 | AT5G38000 | 60.059 | 338 | 116 | 6 | 6 | 326 | 12 | 347 | 9.04e-146 | 415 |
| MS.gene020227.t1 | AT3G59845 | 60.465 | 344 | 120 | 6 | 4 | 333 | 5 | 346 | 7.12e-143 | 407 |
| MS.gene020227.t1 | AT5G38000 | 58.309 | 343 | 108 | 6 | 6 | 334 | 12 | 333 | 5.85e-139 | 397 |
| MS.gene020227.t1 | AT1G65560 | 56.358 | 346 | 135 | 6 | 4 | 335 | 7 | 350 | 9.36e-130 | 374 |
| MS.gene020227.t1 | AT5G16980 | 55.814 | 344 | 104 | 4 | 1 | 335 | 1 | 305 | 9.41e-130 | 373 |
| MS.gene020227.t1 | AT5G16980 | 72.247 | 227 | 54 | 1 | 118 | 335 | 13 | 239 | 9.08e-119 | 342 |
| MS.gene020227.t1 | AT5G16980 | 72.247 | 227 | 54 | 1 | 118 | 335 | 13 | 239 | 9.08e-119 | 342 |
| MS.gene020227.t1 | AT3G59845 | 65.306 | 245 | 74 | 3 | 99 | 333 | 1 | 244 | 1.73e-108 | 317 |
| MS.gene020227.t1 | AT1G65560 | 57.565 | 271 | 102 | 3 | 78 | 335 | 4 | 274 | 4.08e-105 | 309 |
| MS.gene020227.t1 | AT5G17000 | 65.438 | 217 | 62 | 4 | 6 | 210 | 5 | 220 | 6.10e-98 | 290 |
| MS.gene020227.t1 | AT1G49670 | 33.175 | 211 | 120 | 6 | 139 | 332 | 412 | 618 | 2.15e-20 | 92.4 |
| MS.gene020227.t1 | AT5G37960 | 51.948 | 77 | 37 | 0 | 254 | 330 | 25 | 101 | 1.17e-19 | 83.2 |
| MS.gene020227.t1 | AT1G49670 | 33.171 | 205 | 116 | 6 | 145 | 332 | 441 | 641 | 4.40e-19 | 88.6 |
Find 74 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTCTTCTTTGTAGTTAA+TGG | 0.122574 | 8.3:-78404935 | None:intergenic |
| GATCTGTTGAAGAATAAATT+TGG | 0.232879 | 8.3:+78404901 | MS.gene020227:CDS |
| CGTGGATTGATAGATGCTTT+TGG | 0.268838 | 8.3:-78402930 | None:intergenic |
| TCCTACTATACTGGAGTTCT+AGG | 0.294178 | 8.3:+78403730 | MS.gene020227:CDS |
| AACCATGCAATTTGGCGAAT+TGG | 0.308933 | 8.3:-78404294 | None:intergenic |
| TTTCAGCCGTTAACTGGTTA+TGG | 0.313356 | 8.3:+78403568 | MS.gene020227:intron |
| ACAACATCGTTGGAACCTTC+TGG | 0.323062 | 8.3:-78402849 | None:intergenic |
| AATATGCCAACCAAGGCTTC+AGG | 0.325576 | 8.3:-78405423 | None:intergenic |
| ATCTGAACACAAAGATTATA+AGG | 0.335851 | 8.3:+78403609 | MS.gene020227:CDS |
| TCGTAATTTCAGCCGTTAAC+TGG | 0.342310 | 8.3:+78403562 | MS.gene020227:intron |
| TCATCTATACAGCAAATTCT+TGG | 0.348074 | 8.3:+78405326 | MS.gene020227:CDS |
| ATGTTGAGGTCTGATTCTTT+AGG | 0.350907 | 8.3:-78402798 | None:intergenic |
| CTTCTGAAACATTATGTGTC+TGG | 0.389777 | 8.3:+78402771 | MS.gene020227:CDS |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.392209 | 8.3:+78404271 | MS.gene020227:CDS |
| GTTCCTCTTTCCTACTATAC+TGG | 0.394850 | 8.3:+78403721 | MS.gene020227:CDS |
| AACGTAGCAACCATGCAATT+TGG | 0.396664 | 8.3:-78404302 | None:intergenic |
| TTCTGGAATCTTAAGAGTTA+TGG | 0.398031 | 8.3:-78402832 | None:intergenic |
| CCAGCATAAGCAGTCATTCC+TGG | 0.404051 | 8.3:-78404190 | None:intergenic |
| AAAGTAAACATCAATGCCTT+CGG | 0.421792 | 8.3:-78405124 | None:intergenic |
| GACACACCATAACCAGTTAA+CGG | 0.422138 | 8.3:-78403574 | None:intergenic |
| GCCTTGGTTGGCATATTTAG+TGG | 0.423385 | 8.3:+78405429 | MS.gene020227:CDS |
| AAGTAAACATCAATGCCTTC+GGG | 0.426844 | 8.3:-78405123 | None:intergenic |
| AGAAGGGAAGGTTGTGTATG+TGG | 0.430397 | 8.3:+78405371 | MS.gene020227:CDS |
| GCTGTATAGATGATAGTAAT+CGG | 0.440906 | 8.3:-78405316 | None:intergenic |
| AGCCATAAACTTACAGATTG+AGG | 0.442715 | 8.3:-78402963 | None:intergenic |
| AGGTTCCAACGATGTTGTAT+TGG | 0.452549 | 8.3:+78402854 | MS.gene020227:CDS |
| CACAATCTTACTCAACTTGA+AGG | 0.457097 | 8.3:+78405234 | MS.gene020227:CDS |
| TCTTTGAGTGCAGGTATGCC+AGG | 0.460876 | 8.3:+78404172 | MS.gene020227:intron |
| ATATGCCAACCAAGGCTTCA+GGG | 0.469173 | 8.3:-78405422 | None:intergenic |
| TTTAACCAATACAACATCGT+TGG | 0.470295 | 8.3:-78402859 | None:intergenic |
| TATAAGCGGGTTCGTTTGCA+AGG | 0.473653 | 8.3:+78405282 | MS.gene020227:CDS |
| CTCATAAGAGTCCTCATGTA+AGG | 0.474115 | 8.3:-78402903 | None:intergenic |
| TATGCTGGTTTCTTTGAAGT+AGG | 0.475286 | 8.3:+78404205 | MS.gene020227:CDS |
| TGAGAAAGGCCCTGAAGCCT+TGG | 0.477909 | 8.3:+78405413 | MS.gene020227:CDS |
| TCAGCTGCCTCTGGTGCAGT+TGG | 0.486180 | 8.3:+78404259 | MS.gene020227:CDS |
| TTGAAATGTATTTGAGCCGC+AGG | 0.496347 | 8.3:-78403682 | None:intergenic |
| ACCTAGAACTCCAGTATAGT+AGG | 0.498495 | 8.3:-78403731 | None:intergenic |
| GAAGTAGGCGCTACCAAGAA+AGG | 0.498938 | 8.3:+78404220 | MS.gene020227:CDS |
| CCAGGAATGACTGCTTATGC+TGG | 0.502390 | 8.3:+78404190 | MS.gene020227:CDS |
| AGCACATATCGTATATAAGC+GGG | 0.502996 | 8.3:+78405269 | MS.gene020227:CDS |
| ACCTCAATGCAAGATTGAAA+AGG | 0.521827 | 8.3:+78404959 | MS.gene020227:CDS |
| TAAGGAAGGTGATATAGTGT+GGG | 0.522542 | 8.3:+78403627 | MS.gene020227:CDS |
| ATAAGGAAGGTGATATAGTG+TGG | 0.533080 | 8.3:+78403626 | MS.gene020227:CDS |
| ATAGCTGAGGGTCTTGAGAA+AGG | 0.540813 | 8.3:+78405399 | MS.gene020227:CDS |
| GTTTACTTTGAGAACGTTGG+AGG | 0.547671 | 8.3:+78405138 | MS.gene020227:CDS |
| ACTTACAGATTGAGGAACAT+AGG | 0.548541 | 8.3:-78402955 | None:intergenic |
| TCCCTTCTCTGATACGAGGC+AGG | 0.554222 | 8.3:-78405356 | None:intergenic |
| GAACACAAAGATTATAAGGA+AGG | 0.565010 | 8.3:+78403613 | MS.gene020227:CDS |
| ACTCCAGTATAGTAGGAAAG+AGG | 0.571694 | 8.3:-78403724 | None:intergenic |
| AAAGGCCCTGAAGCCTTGGT+TGG | 0.572741 | 8.3:+78405417 | MS.gene020227:CDS |
| GATGTTTACTTTGAGAACGT+TGG | 0.576272 | 8.3:+78405135 | MS.gene020227:CDS |
| GTCCTGCCTCGTATCAGAGA+AGG | 0.579424 | 8.3:+78405354 | MS.gene020227:CDS |
| GCCTCGTATCAGAGAAGGGA+AGG | 0.580164 | 8.3:+78405359 | MS.gene020227:CDS |
| GGCCAATTCGCCAAATTGCA+TGG | 0.580690 | 8.3:+78404292 | MS.gene020227:CDS |
| GCCACTAAATATGCCAACCA+AGG | 0.582332 | 8.3:-78405430 | None:intergenic |
| TTATGGTGTGTCTAAAGTTG+TGG | 0.587703 | 8.3:+78403585 | MS.gene020227:CDS |
| ATAACTCTTAAGATTCCAGA+AGG | 0.595274 | 8.3:+78402834 | MS.gene020227:CDS |
| AAGGAAGGTGATATAGTGTG+GGG | 0.603651 | 8.3:+78403628 | MS.gene020227:CDS |
| TCCTGCCTCGTATCAGAGAA+GGG | 0.605584 | 8.3:+78405355 | MS.gene020227:CDS |
| TTAATTAGGCACTTTCCCGA+AGG | 0.615146 | 8.3:+78405108 | MS.gene020227:intron |
| TGGTACTGTCAACAATGTTG+AGG | 0.627893 | 8.3:-78402812 | None:intergenic |
| AAGTTGACCAACTGCACCAG+AGG | 0.637825 | 8.3:-78404266 | None:intergenic |
| TGAAATGTATTTGAGCCGCA+GGG | 0.641592 | 8.3:-78403681 | None:intergenic |
| CTCTTGAATATGAAAGTGCA+TGG | 0.642082 | 8.3:+78405180 | MS.gene020227:CDS |
| TAGCACATATCGTATATAAG+CGG | 0.655907 | 8.3:+78405268 | MS.gene020227:CDS |
| AGGAAGGTGATATAGTGTGG+GGG | 0.659217 | 8.3:+78403629 | MS.gene020227:CDS |
| TGTCTTGTGATCCTTACATG+AGG | 0.664048 | 8.3:+78402892 | MS.gene020227:CDS |
| CATGGTCGCATACCTGTGTG+TGG | 0.678710 | 8.3:+78405198 | MS.gene020227:CDS |
| ACCTTCCCTTCTCTGATACG+AGG | 0.702118 | 8.3:-78405360 | None:intergenic |
| TGTGAGATCATTCCACACAC+AGG | 0.714594 | 8.3:-78405210 | None:intergenic |
| GATTGAGGAACATAGGCACG+TGG | 0.744035 | 8.3:-78402948 | None:intergenic |
| GTATGTGGAAGACATAGCTG+AGG | 0.744288 | 8.3:+78405386 | MS.gene020227:CDS |
| TATGTGGAAGACATAGCTGA+GGG | 0.752621 | 8.3:+78405387 | MS.gene020227:CDS |
| AGAGTACAGCTTGATCCCTG+CGG | 0.754975 | 8.3:+78403666 | MS.gene020227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTGAAAAATATTAATAT+AGG | - | chr8.3:78403936-78403955 | None:intergenic | 10.0% |
| !! | TTGAAATTTGTAATAAAATT+AGG | - | chr8.3:78404640-78404659 | None:intergenic | 10.0% |
| !! | AGACATATATATTTAAGTAA+AGG | - | chr8.3:78404867-78404886 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTCTACTTTA+AGG | - | chr8.3:78403019-78403038 | None:intergenic | 15.0% |
| !! | GATATCAATTTATGTTAATT+AGG | + | chr8.3:78405094-78405113 | MS.gene020227:intron | 15.0% |
| !!! | AGAGTTTTTTATATGTAAAT+TGG | + | chr8.3:78403025-78403044 | MS.gene020227:intron | 15.0% |
| !! | AAAAACATCATAATAACTTG+AGG | - | chr8.3:78403806-78403825 | None:intergenic | 20.0% |
| !! | AATTTGACAAATACTGAAAA+GGG | - | chr8.3:78402993-78403012 | None:intergenic | 20.0% |
| !! | ACATGTGTTAAAGAAAAAAA+AGG | + | chr8.3:78403305-78403324 | MS.gene020227:intron | 20.0% |
| !! | CATAGAAAATTATGTTTCTT+TGG | + | chr8.3:78403396-78403415 | MS.gene020227:intron | 20.0% |
| !! | CATGTGTTAAAGAAAAAAAA+GGG | + | chr8.3:78403306-78403325 | MS.gene020227:intron | 20.0% |
| !! | TAATTTGACAAATACTGAAA+AGG | - | chr8.3:78402994-78403013 | None:intergenic | 20.0% |
| !! | TATCATCAGTTTCAAATAAA+AGG | - | chr8.3:78403998-78404017 | None:intergenic | 20.0% |
| !!! | AAGAATAATTTGCTAAGAAA+TGG | - | chr8.3:78403112-78403131 | None:intergenic | 20.0% |
| !!! | TAGGTTTACAATTTTGATTT+TGG | + | chr8.3:78403080-78403099 | MS.gene020227:intron | 20.0% |
| !!! | TATTTTTGTTGAGAATTTGA+AGG | + | chr8.3:78403427-78403446 | MS.gene020227:intron | 20.0% |
| !!! | TTGAACTACTCTTAATTTTT+AGG | + | chr8.3:78404734-78404753 | MS.gene020227:intron | 20.0% |
| ! | AAGAAAAACACATGTCAAAA+AGG | - | chr8.3:78404156-78404175 | None:intergenic | 25.0% |
| ! | AGAAAAGATTATAAGAGAAG+CGG | - | chr8.3:78404047-78404066 | None:intergenic | 25.0% |
| ! | AGAAAATTATGTTTCTTTGG+TGG | + | chr8.3:78403399-78403418 | MS.gene020227:intron | 25.0% |
| ! | ATATTTAGTGGCAAAAATGT+TGG | + | chr8.3:78405441-78405460 | MS.gene020227:CDS | 25.0% |
| ! | ATCTACAATATCAACAATCA+AGG | + | chr8.3:78404555-78404574 | MS.gene020227:intron | 25.0% |
| ! | ATCTGAACACAAAGATTATA+AGG | + | chr8.3:78403609-78403628 | MS.gene020227:CDS | 25.0% |
| ! | GAAAATTATGTTTCTTTGGT+GGG | + | chr8.3:78403400-78403419 | MS.gene020227:intron | 25.0% |
| ! | GATCTGTTGAAGAATAAATT+TGG | + | chr8.3:78404901-78404920 | MS.gene020227:CDS | 25.0% |
| ! | TACTAGTTCAATATGCTTAT+TGG | + | chr8.3:78405012-78405031 | MS.gene020227:intron | 25.0% |
| ! | TCAATGAAAAGACACAAAAA+TGG | - | chr8.3:78404822-78404841 | None:intergenic | 25.0% |
| ! | TGATTGTTGATATTGTAGAT+AGG | - | chr8.3:78404555-78404574 | None:intergenic | 25.0% |
| ! | TGTATGATTATAGAGAAGAA+TGG | + | chr8.3:78403755-78403774 | MS.gene020227:intron | 25.0% |
| ! | TTCTAGTCAATTTACAAACT+CGG | + | chr8.3:78403240-78403259 | MS.gene020227:intron | 25.0% |
| !! | CTTCTCTTATAATCTTTTCT+TGG | + | chr8.3:78404047-78404066 | MS.gene020227:intron | 25.0% |
| AAAAACATTCTCTCCTTTCT+TGG | - | chr8.3:78404236-78404255 | None:intergenic | 30.0% | |
| AAACAACTCTTTCACACAAT+AGG | - | chr8.3:78403894-78403913 | None:intergenic | 30.0% | |
| AAAGTAAACATCAATGCCTT+CGG | - | chr8.3:78405127-78405146 | None:intergenic | 30.0% | |
| AAATTGAAGAGAATTGTACC+AGG | + | chr8.3:78404689-78404708 | MS.gene020227:intron | 30.0% | |
| ACACAAATTAGTCACCAAAA+TGG | - | chr8.3:78403285-78403304 | None:intergenic | 30.0% | |
| ATAACTCTTAAGATTCCAGA+AGG | + | chr8.3:78402834-78402853 | MS.gene020227:CDS | 30.0% | |
| ATTTACAAACTCGGATTCTT+TGG | + | chr8.3:78403249-78403268 | MS.gene020227:intron | 30.0% | |
| CAACTGTGCAAATATTATTC+TGG | - | chr8.3:78404717-78404736 | None:intergenic | 30.0% | |
| CTTGTTCAACAAAGGATATA+CGG | + | chr8.3:78403962-78403981 | MS.gene020227:intron | 30.0% | |
| GAACACAAAGATTATAAGGA+AGG | + | chr8.3:78403613-78403632 | MS.gene020227:CDS | 30.0% | |
| GCTGTATAGATGATAGTAAT+CGG | - | chr8.3:78405319-78405338 | None:intergenic | 30.0% | |
| TAGCACATATCGTATATAAG+CGG | + | chr8.3:78405268-78405287 | MS.gene020227:CDS | 30.0% | |
| TCATCTATACAGCAAATTCT+TGG | + | chr8.3:78405326-78405345 | MS.gene020227:CDS | 30.0% | |
| TGGTACAATTCTCTTCAATT+TGG | - | chr8.3:78404690-78404709 | None:intergenic | 30.0% | |
| TGTCTTATCTTGTTCAACAA+AGG | + | chr8.3:78403954-78403973 | MS.gene020227:intron | 30.0% | |
| TTCCTCAATCTGTAAGTTTA+TGG | + | chr8.3:78402961-78402980 | MS.gene020227:intron | 30.0% | |
| TTGCTCTTCTTTGTAGTTAA+TGG | - | chr8.3:78404938-78404957 | None:intergenic | 30.0% | |
| TTGTTTAGTATCGTTACAGA+CGG | + | chr8.3:78403848-78403867 | MS.gene020227:intron | 30.0% | |
| TTTAACCAATACAACATCGT+TGG | - | chr8.3:78402862-78402881 | None:intergenic | 30.0% | |
| ! | AAATTGGTCTCTTCATCATA+TGG | + | chr8.3:78403041-78403060 | MS.gene020227:intron | 30.0% |
| ! | AAGACACAAAAATGGATTTC+TGG | - | chr8.3:78404814-78404833 | None:intergenic | 30.0% |
| ! | AATTGGTCTCTTCATCATAT+GGG | + | chr8.3:78403042-78403061 | MS.gene020227:intron | 30.0% |
| ! | AGACACAAAAATGGATTTCT+GGG | - | chr8.3:78404813-78404832 | None:intergenic | 30.0% |
| ! | TTGGAAAATTGGAACCATTT+TGG | + | chr8.3:78403268-78403287 | MS.gene020227:intron | 30.0% |
| !! | ATGAATGTTTTGTTGTAACC+TGG | + | chr8.3:78404759-78404778 | MS.gene020227:intron | 30.0% |
| !! | TTCTGGAATCTTAAGAGTTA+TGG | - | chr8.3:78402835-78402854 | None:intergenic | 30.0% |
| !!! | TGTTTTAACTCTCTAGTTCT+TGG | + | chr8.3:78403155-78403174 | MS.gene020227:intron | 30.0% |
| AAGTAAACATCAATGCCTTC+GGG | - | chr8.3:78405126-78405145 | None:intergenic | 35.0% | |
| ACAATAGGTTTCTATCCTGA+TGG | - | chr8.3:78403879-78403898 | None:intergenic | 35.0% | |
| ACCTCAATGCAAGATTGAAA+AGG | + | chr8.3:78404959-78404978 | MS.gene020227:CDS | 35.0% | |
| ACTTACAGATTGAGGAACAT+AGG | - | chr8.3:78402958-78402977 | None:intergenic | 35.0% | |
| AGCACATATCGTATATAAGC+GGG | + | chr8.3:78405269-78405288 | MS.gene020227:CDS | 35.0% | |
| AGCCATAAACTTACAGATTG+AGG | - | chr8.3:78402966-78402985 | None:intergenic | 35.0% | |
| ATAAGGAAGGTGATATAGTG+TGG | + | chr8.3:78403626-78403645 | MS.gene020227:CDS | 35.0% | |
| ATGTTGAGGTCTGATTCTTT+AGG | - | chr8.3:78402801-78402820 | None:intergenic | 35.0% | |
| ATTACACTGACATTGATCGA+AGG | + | chr8.3:78404493-78404512 | MS.gene020227:intron | 35.0% | |
| CACAATCTTACTCAACTTGA+AGG | + | chr8.3:78405234-78405253 | MS.gene020227:CDS | 35.0% | |
| GAAAGAGTTGTTTGTTTGTC+TGG | + | chr8.3:78403901-78403920 | MS.gene020227:intron | 35.0% | |
| TAAGGAAGGTGATATAGTGT+GGG | + | chr8.3:78403627-78403646 | MS.gene020227:CDS | 35.0% | |
| TATATATGTCTCTTGCTACC+AGG | + | chr8.3:78404876-78404895 | MS.gene020227:intron | 35.0% | |
| TGTTTAGTATCGTTACAGAC+GGG | + | chr8.3:78403849-78403868 | MS.gene020227:intron | 35.0% | |
| ! | ACCTTTTCAATCTTGCATTG+AGG | - | chr8.3:78404963-78404982 | None:intergenic | 35.0% |
| ! | ACTCGGATTCTTTGGAAAAT+TGG | + | chr8.3:78403257-78403276 | MS.gene020227:intron | 35.0% |
| ! | ATGTGTTTTTCTTTGAGTGC+AGG | + | chr8.3:78404163-78404182 | MS.gene020227:intron | 35.0% |
| ! | CTCTTGAATATGAAAGTGCA+TGG | + | chr8.3:78405180-78405199 | MS.gene020227:CDS | 35.0% |
| ! | GACACAAAAATGGATTTCTG+GGG | - | chr8.3:78404812-78404831 | None:intergenic | 35.0% |
| ! | GATGTTTACTTTGAGAACGT+TGG | + | chr8.3:78405135-78405154 | MS.gene020227:CDS | 35.0% |
| ! | TCATACTCTTTTCCTTTTCC+AGG | - | chr8.3:78404780-78404799 | None:intergenic | 35.0% |
| ! | TTATGGTGTGTCTAAAGTTG+TGG | + | chr8.3:78403585-78403604 | MS.gene020227:CDS | 35.0% |
| !! | CTTCTGAAACATTATGTGTC+TGG | + | chr8.3:78402771-78402790 | MS.gene020227:CDS | 35.0% |
| !! | GCAAATATTATTCTGGTTCC+TGG | - | chr8.3:78404710-78404729 | None:intergenic | 35.0% |
| !! | GTGGATTGATAGATGCTTTT+GGG | - | chr8.3:78402932-78402951 | None:intergenic | 35.0% |
| !! | GTTTTGTTGTAACCTGGAAA+AGG | + | chr8.3:78404765-78404784 | MS.gene020227:intron | 35.0% |
| !! | TATGCTGGTTTCTTTGAAGT+AGG | + | chr8.3:78404205-78404224 | MS.gene020227:CDS | 35.0% |
| AACCATGCAATTTGGCGAAT+TGG | - | chr8.3:78404297-78404316 | None:intergenic | 40.0% | |
| AACGTAGCAACCATGCAATT+TGG | - | chr8.3:78404305-78404324 | None:intergenic | 40.0% | |
| AAGGAAGGTGATATAGTGTG+GGG | + | chr8.3:78403628-78403647 | MS.gene020227:CDS | 40.0% | |
| ACCTAGAACTCCAGTATAGT+AGG | - | chr8.3:78403734-78403753 | None:intergenic | 40.0% | |
| ACTCCAGTATAGTAGGAAAG+AGG | - | chr8.3:78403727-78403746 | None:intergenic | 40.0% | |
| AGGTTCCAACGATGTTGTAT+TGG | + | chr8.3:78402854-78402873 | MS.gene020227:CDS | 40.0% | |
| AGTGTGGGGGATAACTAATT+GGG | + | chr8.3:78403642-78403661 | MS.gene020227:CDS | 40.0% | |
| AGTTACCACGTTTAGCAACA+CGG | + | chr8.3:78405048-78405067 | MS.gene020227:intron | 40.0% | |
| CTCATAAGAGTCCTCATGTA+AGG | - | chr8.3:78402906-78402925 | None:intergenic | 40.0% | |
| GACACACCATAACCAGTTAA+CGG | - | chr8.3:78403577-78403596 | None:intergenic | 40.0% | |
| GTTCCTCTTTCCTACTATAC+TGG | + | chr8.3:78403721-78403740 | MS.gene020227:CDS | 40.0% | |
| TAGTGTGGGGGATAACTAAT+TGG | + | chr8.3:78403641-78403660 | MS.gene020227:CDS | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | + | chr8.3:78405387-78405406 | MS.gene020227:CDS | 40.0% | |
| TATTCTTCAACAGATCCACC+TGG | - | chr8.3:78404897-78404916 | None:intergenic | 40.0% | |
| TCCTACTATACTGGAGTTCT+AGG | + | chr8.3:78403730-78403749 | MS.gene020227:CDS | 40.0% | |
| TCGTAATTTCAGCCGTTAAC+TGG | + | chr8.3:78403562-78403581 | MS.gene020227:intron | 40.0% | |
| TGAAATGTATTTGAGCCGCA+GGG | - | chr8.3:78403684-78403703 | None:intergenic | 40.0% | |
| TGGTACTGTCAACAATGTTG+AGG | - | chr8.3:78402815-78402834 | None:intergenic | 40.0% | |
| TGTCCTAGTAATCCGCAATT+TGG | + | chr8.3:78403185-78403204 | MS.gene020227:intron | 40.0% | |
| TGTCTTGTGATCCTTACATG+AGG | + | chr8.3:78402892-78402911 | MS.gene020227:CDS | 40.0% | |
| TGTTTGTTTGTCTGGCTGTT+TGG | + | chr8.3:78403909-78403928 | MS.gene020227:intron | 40.0% | |
| TTAATTAGGCACTTTCCCGA+AGG | + | chr8.3:78405108-78405127 | MS.gene020227:intron | 40.0% | |
| TTCAGTGTCTTACTCTGACA+CGG | + | chr8.3:78404431-78404450 | MS.gene020227:intron | 40.0% | |
| TTGAAATGTATTTGAGCCGC+AGG | - | chr8.3:78403685-78403704 | None:intergenic | 40.0% | |
| TTGAGGCTTGCATATCATAC+TGG | - | chr8.3:78403789-78403808 | None:intergenic | 40.0% | |
| TTTCAGCCGTTAACTGGTTA+TGG | + | chr8.3:78403568-78403587 | MS.gene020227:intron | 40.0% | |
| ! | CAATCAAGGTTTTTGCTCAC+TGG | + | chr8.3:78404569-78404588 | MS.gene020227:intron | 40.0% |
| ! | GTTTACTTTGAGAACGTTGG+AGG | + | chr8.3:78405138-78405157 | MS.gene020227:CDS | 40.0% |
| ! | TGAGAATTTGAAGGAAGTGC+TGG | + | chr8.3:78403436-78403455 | MS.gene020227:intron | 40.0% |
| !! | AAGTGCTGGAAGTAAAGAGA+AGG | + | chr8.3:78404337-78404356 | MS.gene020227:intron | 40.0% |
| !! | CGTGGATTGATAGATGCTTT+TGG | - | chr8.3:78402933-78402952 | None:intergenic | 40.0% |
| !! | TGGGTCAATTTGTTGCTAGT+AGG | + | chr8.3:78403061-78403080 | MS.gene020227:intron | 40.0% |
| AATATGCCAACCAAGGCTTC+AGG | - | chr8.3:78405426-78405445 | None:intergenic | 45.0% | |
| ACAACATCGTTGGAACCTTC+TGG | - | chr8.3:78402852-78402871 | None:intergenic | 45.0% | |
| AGAAGGGAAGGTTGTGTATG+TGG | + | chr8.3:78405371-78405390 | MS.gene020227:CDS | 45.0% | |
| AGGAAGGTGATATAGTGTGG+GGG | + | chr8.3:78403629-78403648 | MS.gene020227:CDS | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+AGG | + | chr8.3:78405399-78405418 | MS.gene020227:CDS | 45.0% | |
| ATATGCCAACCAAGGCTTCA+GGG | - | chr8.3:78405425-78405444 | None:intergenic | 45.0% | |
| ATATGTCTCTTGCTACCAGG+TGG | + | chr8.3:78404879-78404898 | MS.gene020227:intron | 45.0% | |
| CCTAGTAATCCGCAATTTGG+CGG | + | chr8.3:78403188-78403207 | MS.gene020227:intron | 45.0% | |
| CTTATGCTACCGCCAAATTG+CGG | - | chr8.3:78403200-78403219 | None:intergenic | 45.0% | |
| GCCACTAAATATGCCAACCA+AGG | - | chr8.3:78405433-78405452 | None:intergenic | 45.0% | |
| GCCTTGGTTGGCATATTTAG+TGG | + | chr8.3:78405429-78405448 | MS.gene020227:CDS | 45.0% | |
| GTATGTGGAAGACATAGCTG+AGG | + | chr8.3:78405386-78405405 | MS.gene020227:CDS | 45.0% | |
| GTTGCTACGTTGTTGGAACT+TGG | + | chr8.3:78404314-78404333 | MS.gene020227:intron | 45.0% | |
| TGTGAGATCATTCCACACAC+AGG | - | chr8.3:78405213-78405232 | None:intergenic | 45.0% | |
| TTGCATGGTTGCTACGTTGT+TGG | + | chr8.3:78404307-78404326 | MS.gene020227:intron | 45.0% | |
| ! | TATAAGCGGGTTCGTTTGCA+AGG | + | chr8.3:78405282-78405301 | MS.gene020227:CDS | 45.0% |
| ! | TGACGGGTCATCATTTATGC+AGG | - | chr8.3:78404392-78404411 | None:intergenic | 45.0% |
| ! | TTGTTGGAACTTGGAAGTGC+TGG | + | chr8.3:78404323-78404342 | MS.gene020227:intron | 45.0% |
| !! | GTTTTTGTTTCAGCTGCCTC+TGG | + | chr8.3:78404250-78404269 | MS.gene020227:CDS | 45.0% |
| !! | TGAAGGAAGTGCTGGATAGA+GGG | + | chr8.3:78403444-78403463 | MS.gene020227:intron | 45.0% |
| !! | TTGAAGGAAGTGCTGGATAG+AGG | + | chr8.3:78403443-78403462 | MS.gene020227:intron | 45.0% |
| !!! | TGTTATTTATATATTTTAAT+TGG | + | chr8.3:78403363-78403382 | MS.gene020227:intron | 5.0% |
| AAGTTGACCAACTGCACCAG+AGG | - | chr8.3:78404269-78404288 | None:intergenic | 50.0% | |
| ACCCGTCAGAATCTGATCGA+AGG | + | chr8.3:78404404-78404423 | MS.gene020227:intron | 50.0% | |
| ACCTTCCCTTCTCTGATACG+AGG | - | chr8.3:78405363-78405382 | None:intergenic | 50.0% | |
| AGAGTACAGCTTGATCCCTG+CGG | + | chr8.3:78403666-78403685 | MS.gene020227:CDS | 50.0% | |
| CCAGCATAAGCAGTCATTCC+TGG | - | chr8.3:78404193-78404212 | None:intergenic | 50.0% | |
| CCAGGAATGACTGCTTATGC+TGG | + | chr8.3:78404190-78404209 | MS.gene020227:CDS | 50.0% | |
| CGAGACACACTAGTGACATG+TGG | + | chr8.3:78405072-78405091 | MS.gene020227:intron | 50.0% | |
| CGCCTTCGATCAGATTCTGA+CGG | - | chr8.3:78404409-78404428 | None:intergenic | 50.0% | |
| GAAGTAGGCGCTACCAAGAA+AGG | + | chr8.3:78404220-78404239 | MS.gene020227:CDS | 50.0% | |
| GATTGAGGAACATAGGCACG+TGG | - | chr8.3:78402951-78402970 | None:intergenic | 50.0% | |
| GCCTTCGATCAGATTCTGAC+GGG | - | chr8.3:78404408-78404427 | None:intergenic | 50.0% | |
| GGCCAATTCGCCAAATTGCA+TGG | + | chr8.3:78404292-78404311 | MS.gene020227:CDS | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr8.3:78404271-78404290 | MS.gene020227:CDS | 50.0% | |
| TCCTGCCTCGTATCAGAGAA+GGG | + | chr8.3:78405355-78405374 | MS.gene020227:CDS | 50.0% | |
| TCTTTGAGTGCAGGTATGCC+AGG | + | chr8.3:78404172-78404191 | MS.gene020227:intron | 50.0% | |
| ! | CCGCCAAATTGCGGATTACT+AGG | - | chr8.3:78403191-78403210 | None:intergenic | 50.0% |
| !! | AAGTGCTGGATAGAGGGAAG+TGG | + | chr8.3:78403450-78403469 | MS.gene020227:intron | 50.0% |
| !! | TTACAGACGGGTTAGCCATC+AGG | + | chr8.3:78403861-78403880 | MS.gene020227:intron | 50.0% |
| AAAGGCCCTGAAGCCTTGGT+TGG | + | chr8.3:78405417-78405436 | MS.gene020227:CDS | 55.0% | |
| CATGGTCGCATACCTGTGTG+TGG | + | chr8.3:78405198-78405217 | MS.gene020227:CDS | 55.0% | |
| GCCTCGTATCAGAGAAGGGA+AGG | + | chr8.3:78405359-78405378 | MS.gene020227:CDS | 55.0% | |
| GTCCTGCCTCGTATCAGAGA+AGG | + | chr8.3:78405354-78405373 | MS.gene020227:CDS | 55.0% | |
| TCCCTTCTCTGATACGAGGC+AGG | - | chr8.3:78405359-78405378 | None:intergenic | 55.0% | |
| TGAGAAAGGCCCTGAAGCCT+TGG | + | chr8.3:78405413-78405432 | MS.gene020227:CDS | 55.0% | |
| ! | CTCGTCCGTGTTGCTAAACG+TGG | - | chr8.3:78405056-78405075 | None:intergenic | 55.0% |
| TCAGCTGCCTCTGGTGCAGT+TGG | + | chr8.3:78404259-78404278 | MS.gene020227:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78402744 | 78405494 | 78402744 | ID=MS.gene020227 |
| chr8.3 | mRNA | 78402744 | 78405494 | 78402744 | ID=MS.gene020227.t1;Parent=MS.gene020227 |
| chr8.3 | exon | 78402744 | 78402971 | 78402744 | ID=MS.gene020227.t1.exon1;Parent=MS.gene020227.t1 |
| chr8.3 | CDS | 78402744 | 78402971 | 78402744 | ID=cds.MS.gene020227.t1;Parent=MS.gene020227.t1 |
| chr8.3 | exon | 78403574 | 78403751 | 78403574 | ID=MS.gene020227.t1.exon2;Parent=MS.gene020227.t1 |
| chr8.3 | CDS | 78403574 | 78403751 | 78403574 | ID=cds.MS.gene020227.t1;Parent=MS.gene020227.t1 |
| chr8.3 | exon | 78404185 | 78404324 | 78404185 | ID=MS.gene020227.t1.exon3;Parent=MS.gene020227.t1 |
| chr8.3 | CDS | 78404185 | 78404324 | 78404185 | ID=cds.MS.gene020227.t1;Parent=MS.gene020227.t1 |
| chr8.3 | exon | 78404898 | 78404980 | 78404898 | ID=MS.gene020227.t1.exon4;Parent=MS.gene020227.t1 |
| chr8.3 | CDS | 78404898 | 78404980 | 78404898 | ID=cds.MS.gene020227.t1;Parent=MS.gene020227.t1 |
| chr8.3 | exon | 78405116 | 78405494 | 78405116 | ID=MS.gene020227.t1.exon5;Parent=MS.gene020227.t1 |
| chr8.3 | CDS | 78405116 | 78405494 | 78405116 | ID=cds.MS.gene020227.t1;Parent=MS.gene020227.t1 |
| Gene Sequence |
| Protein sequence |
