Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020077.t1 | ACJ85436.1 | 94.7 | 265 | 14 | 0 | 1 | 265 | 1 | 265 | 9.90E-145 | 522.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020077.t1 | Q9SLN8 | 73.8 | 263 | 67 | 2 | 3 | 265 | 4 | 264 | 2.2e-108 | 393.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020077.t1 | B7FL02 | 94.7 | 265 | 14 | 0 | 1 | 265 | 1 | 265 | 7.2e-145 | 522.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020077 | MS.gene020076 | PPI |
| MS.gene020077 | MS.gene022721 | PPI |
| MS.gene020077 | MS.gene39312 | PPI |
| MS.gene020077 | MS.gene022737 | PPI |
| MS.gene020077 | MS.gene020225 | PPI |
| MS.gene020077 | MS.gene39315 | PPI |
| MS.gene020077 | MS.gene41778 | PPI |
| MS.gene020077 | MS.gene067859 | PPI |
| MS.gene020077 | MS.gene022735 | PPI |
| MS.gene020077 | MS.gene020239 | PPI |
| MS.gene020077 | MS.gene54434 | PPI |
| MS.gene020077 | MS.gene022736 | PPI |
| MS.gene020077 | MS.gene020033 | PPI |
| MS.gene020077 | MS.gene020228 | PPI |
| MS.gene020077 | MS.gene020227 | PPI |
| MS.gene020077 | MS.gene069341 | PPI |
| MS.gene08162 | MS.gene020077 | PPI |
| MS.gene020077 | MS.gene042467 | PPI |
| MS.gene020077 | MS.gene54433 | PPI |
| MS.gene020077 | MS.gene45375 | PPI |
| MS.gene020077 | MS.gene39314 | PPI |
| MS.gene020225 | MS.gene020077 | PPI |
| MS.gene020077 | MS.gene020226 | PPI |
| MS.gene020077 | MS.gene022722 | PPI |
| MS.gene020077 | MS.gene022738 | PPI |
| MS.gene020077 | MS.gene39326 | PPI |
| MS.gene020077 | MS.gene39313 | PPI |
| MS.gene020077 | MS.gene39327 | PPI |
| MS.gene020077 | MS.gene97874 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020077.t1 | MTR_8g010030 | 87.547 | 265 | 33 | 0 | 1 | 265 | 1 | 265 | 4.72e-176 | 488 |
| MS.gene020077.t1 | MTR_8g010000 | 85.283 | 265 | 14 | 1 | 1 | 265 | 1 | 240 | 5.37e-166 | 462 |
| MS.gene020077.t1 | MTR_8g009820 | 83.459 | 266 | 41 | 2 | 1 | 265 | 60 | 323 | 1.43e-163 | 459 |
| MS.gene020077.t1 | MTR_8g009980 | 82.331 | 266 | 45 | 2 | 1 | 265 | 1 | 265 | 2.43e-163 | 456 |
| MS.gene020077.t1 | MTR_8g010020 | 85.660 | 265 | 6 | 1 | 1 | 265 | 1 | 233 | 1.40e-162 | 453 |
| MS.gene020077.t1 | MTR_8g009840 | 80.451 | 266 | 48 | 3 | 1 | 265 | 1 | 263 | 1.13e-154 | 441 |
| MS.gene020077.t1 | MTR_8g009830 | 78.947 | 266 | 52 | 3 | 1 | 265 | 1 | 263 | 6.52e-154 | 432 |
| MS.gene020077.t1 | MTR_4g082970 | 69.962 | 263 | 77 | 2 | 4 | 265 | 10 | 271 | 1.05e-127 | 366 |
| MS.gene020077.t1 | MTR_8g007325 | 80.000 | 220 | 41 | 2 | 1 | 219 | 1 | 218 | 1.23e-127 | 361 |
| MS.gene020077.t1 | MTR_7g406860 | 60.223 | 269 | 99 | 4 | 1 | 265 | 3 | 267 | 1.49e-108 | 317 |
| MS.gene020077.t1 | MTR_0011s0280 | 47.710 | 262 | 132 | 2 | 3 | 260 | 2 | 262 | 2.62e-86 | 261 |
| MS.gene020077.t1 | MTR_2g088220 | 44.569 | 267 | 141 | 5 | 4 | 265 | 6 | 270 | 3.56e-66 | 209 |
| MS.gene020077.t1 | MTR_2g088190 | 44.238 | 269 | 139 | 6 | 4 | 265 | 5 | 269 | 5.73e-65 | 206 |
| MS.gene020077.t1 | MTR_2g088200 | 42.279 | 272 | 141 | 7 | 4 | 265 | 5 | 270 | 8.15e-62 | 198 |
| MS.gene020077.t1 | MTR_4g086400 | 43.443 | 122 | 67 | 2 | 139 | 260 | 276 | 395 | 3.36e-22 | 95.5 |
| MS.gene020077.t1 | MTR_4g086400 | 43.443 | 122 | 67 | 2 | 139 | 260 | 416 | 535 | 4.44e-22 | 95.5 |
| MS.gene020077.t1 | MTR_4g086410 | 42.623 | 122 | 68 | 2 | 139 | 260 | 416 | 535 | 5.90e-22 | 95.1 |
| MS.gene020077.t1 | MTR_5g095030 | 60.784 | 51 | 20 | 0 | 215 | 265 | 9 | 59 | 8.51e-16 | 72.4 |
| MS.gene020077.t1 | MTR_5g095020 | 50.847 | 59 | 28 | 1 | 29 | 87 | 6 | 63 | 6.04e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020077.t1 | AT5G16990 | 73.664 | 262 | 66 | 3 | 6 | 265 | 4 | 264 | 2.04e-138 | 393 |
| MS.gene020077.t1 | AT5G16970 | 71.483 | 263 | 71 | 3 | 6 | 265 | 5 | 266 | 3.48e-137 | 390 |
| MS.gene020077.t1 | AT3G03080 | 72.285 | 267 | 69 | 3 | 2 | 265 | 7 | 271 | 3.63e-137 | 390 |
| MS.gene020077.t1 | AT5G17000 | 72.624 | 263 | 68 | 3 | 6 | 265 | 5 | 266 | 1.84e-136 | 388 |
| MS.gene020077.t1 | AT1G26320 | 72.075 | 265 | 70 | 3 | 4 | 265 | 9 | 272 | 3.39e-135 | 385 |
| MS.gene020077.t1 | AT5G16960 | 67.910 | 268 | 82 | 3 | 1 | 265 | 1 | 267 | 7.62e-131 | 374 |
| MS.gene020077.t1 | AT5G16960 | 67.910 | 268 | 82 | 3 | 1 | 265 | 1 | 267 | 7.62e-131 | 374 |
| MS.gene020077.t1 | AT1G26320 | 70.566 | 265 | 69 | 4 | 4 | 265 | 9 | 267 | 1.00e-130 | 374 |
| MS.gene020077.t1 | AT5G37980 | 69.057 | 265 | 75 | 4 | 6 | 265 | 12 | 274 | 1.34e-128 | 369 |
| MS.gene020077.t1 | AT5G37940 | 67.803 | 264 | 80 | 3 | 6 | 265 | 12 | 274 | 4.30e-128 | 367 |
| MS.gene020077.t1 | AT5G38000 | 66.296 | 270 | 84 | 4 | 1 | 265 | 7 | 274 | 2.50e-126 | 363 |
| MS.gene020077.t1 | AT5G38000 | 67.547 | 265 | 79 | 4 | 6 | 265 | 12 | 274 | 3.22e-126 | 363 |
| MS.gene020077.t1 | AT3G59845 | 67.300 | 263 | 79 | 5 | 4 | 261 | 5 | 265 | 2.04e-118 | 343 |
| MS.gene020077.t1 | AT5G38000 | 63.019 | 265 | 72 | 5 | 6 | 265 | 12 | 255 | 4.84e-112 | 326 |
| MS.gene020077.t1 | AT5G17000 | 64.000 | 250 | 78 | 4 | 6 | 252 | 5 | 245 | 7.67e-110 | 317 |
| MS.gene020077.t1 | AT1G65560 | 60.311 | 257 | 96 | 4 | 4 | 256 | 7 | 261 | 8.39e-105 | 308 |
| MS.gene020077.t1 | AT5G16980 | 55.849 | 265 | 78 | 3 | 1 | 265 | 1 | 226 | 3.66e-94 | 280 |
| MS.gene020077.t1 | AT3G59845 | 76.829 | 164 | 36 | 2 | 99 | 261 | 1 | 163 | 7.18e-85 | 254 |
| MS.gene020077.t1 | AT5G16980 | 81.081 | 148 | 28 | 0 | 118 | 265 | 13 | 160 | 9.82e-84 | 251 |
| MS.gene020077.t1 | AT5G16980 | 81.081 | 148 | 28 | 0 | 118 | 265 | 13 | 160 | 9.82e-84 | 251 |
| MS.gene020077.t1 | AT1G65560 | 64.286 | 182 | 62 | 1 | 78 | 256 | 4 | 185 | 1.20e-80 | 244 |
| MS.gene020077.t1 | AT1G49670 | 42.623 | 122 | 68 | 2 | 139 | 260 | 412 | 531 | 1.93e-23 | 99.8 |
| MS.gene020077.t1 | AT1G49670 | 43.363 | 113 | 62 | 2 | 148 | 260 | 444 | 554 | 1.64e-22 | 97.1 |
Find 58 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTCTTCTTTGTAGTTAA+TGG | 0.122574 | 8.2:-79642255 | None:intergenic |
| GATCTGTTGAAGAATAAATT+TGG | 0.232879 | 8.2:+79642221 | MS.gene020077:CDS |
| CGTGGGTTGATAGAAGCTTT+TGG | 0.282161 | 8.2:-79639862 | None:intergenic |
| AAGTAAACGTCAATGCCTTC+TGG | 0.294778 | 8.2:-79642458 | None:intergenic |
| TCATACTATACTGGCATTCT+TGG | 0.299905 | 8.2:+79640913 | MS.gene020077:CDS |
| CCAGGAATGACTGCTGATTC+TGG | 0.299952 | 8.2:+79641519 | MS.gene020077:CDS |
| ACAACATCGTTGGAACCTTC+TGG | 0.330331 | 8.2:-79639781 | None:intergenic |
| GTTCCTCTTTCATACTATAC+TGG | 0.341418 | 8.2:+79640904 | MS.gene020077:CDS |
| TTATGGTGTGTCTAAAGTTC+TGG | 0.342860 | 8.2:+79640768 | MS.gene020077:CDS |
| AACCATGCAATTTAGCGAAT+TGG | 0.343765 | 8.2:-79641623 | None:intergenic |
| ATGTAATTGCAGCCGATAAC+TGG | 0.344517 | 8.2:+79640745 | MS.gene020077:intron |
| ATATTGAGGTCTGATTCTTT+AGG | 0.360299 | 8.2:-79639730 | None:intergenic |
| GACACACCATAACCAGTTAT+CGG | 0.365873 | 8.2:-79640757 | None:intergenic |
| AGGTTCCAACGATGTTGTTT+TGG | 0.367348 | 8.2:+79639786 | MS.gene020077:CDS |
| CCAGAATCAGCAGTCATTCC+TGG | 0.377876 | 8.2:-79641519 | None:intergenic |
| GGAGCAGTTGGTCAACTTGT+TGG | 0.381382 | 8.2:+79641600 | MS.gene020077:CDS |
| AAAACATTCTCTCCTTTCTT+GGG | 0.385342 | 8.2:-79641561 | None:intergenic |
| GTGTCTAAAGTTCTGGAATC+TGG | 0.394753 | 8.2:+79640775 | MS.gene020077:CDS |
| TGCTATGTCGTTGGAAGTGC+TGG | 0.402479 | 8.2:+79641645 | MS.gene020077:CDS |
| CTTCTGAAACATTACGTGTC+TGG | 0.415851 | 8.2:+79639703 | MS.gene020077:CDS |
| TTGAAATGTATTTGAGCTGC+AGG | 0.432855 | 8.2:-79640865 | None:intergenic |
| AGCCATAAACTTACAGATTG+AGG | 0.442715 | 8.2:-79639895 | None:intergenic |
| CGTTGGAAGTGCTGGAAGTA+AGG | 0.454625 | 8.2:+79641653 | MS.gene020077:CDS |
| GATTCTGGTTTCTTCGAAGT+AGG | 0.456441 | 8.2:+79641534 | MS.gene020077:CDS |
| TTCTGGAAGCTTAAGACTTA+CGG | 0.459893 | 8.2:-79639764 | None:intergenic |
| TTGCAGCCGATAACTGGTTA+TGG | 0.462292 | 8.2:+79640751 | MS.gene020077:intron |
| TTTAACCAAAACAACATCGT+TGG | 0.463475 | 8.2:-79639791 | None:intergenic |
| CTCATAAGAGTCCTCATGTA+AGG | 0.474115 | 8.2:-79639835 | None:intergenic |
| TCAGCTGCCTCTGGAGCAGT+TGG | 0.487420 | 8.2:+79641588 | MS.gene020077:CDS |
| ACCTGGATGCAGCATTGAAA+AGG | 0.497218 | 8.2:+79642279 | MS.gene020077:CDS |
| TGTTTGAAAACAGGTATGCC+AGG | 0.504225 | 8.2:+79641501 | MS.gene020077:intron |
| GGACACAAAGATTATAAAGA+AGG | 0.506959 | 8.2:+79640796 | MS.gene020077:CDS |
| CTCTTGAATATGAAATTACA+TGG | 0.509872 | 8.2:+79642515 | MS.gene020077:CDS |
| CGGTACTGTCAATAATATTG+AGG | 0.531939 | 8.2:-79639744 | None:intergenic |
| AGTCCTCATGTAAGGATCAC+AGG | 0.545130 | 8.2:-79639827 | None:intergenic |
| GAAGTAGGCTCTCCCAAGAA+AGG | 0.547354 | 8.2:+79641549 | MS.gene020077:CDS |
| ACTTACAGATTGAGGAACAT+AGG | 0.548541 | 8.2:-79639887 | None:intergenic |
| ATAAAGAAGGTGATATTGTG+TGG | 0.550971 | 8.2:+79640809 | MS.gene020077:CDS |
| ATGCCAGTATAGTATGAAAG+AGG | 0.552569 | 8.2:-79640907 | None:intergenic |
| TAAAGAAGGTGATATTGTGT+GGG | 0.557070 | 8.2:+79640810 | MS.gene020077:CDS |
| TTGCATGGTTGCTATGTCGT+TGG | 0.566124 | 8.2:+79641636 | MS.gene020077:CDS |
| GTTTACTTTGAGAACGTTGG+AGG | 0.568105 | 8.2:+79642473 | MS.gene020077:CDS |
| AAGTGCTGGAAGTAAGGAGA+AGG | 0.573952 | 8.2:+79641659 | MS.gene020077:CDS |
| GGCCAATTCGCTAAATTGCA+TGG | 0.580995 | 8.2:+79641621 | MS.gene020077:CDS |
| GACGTTTACTTTGAGAACGT+TGG | 0.592728 | 8.2:+79642470 | MS.gene020077:CDS |
| TGAAATGTATTTGAGCTGCA+GGG | 0.594487 | 8.2:-79640864 | None:intergenic |
| CTACAAAGAAGAGCAAGACC+TGG | 0.596967 | 8.2:+79642262 | MS.gene020077:CDS |
| GTAAGTCTTAAGCTTCCAGA+AGG | 0.620151 | 8.2:+79639766 | MS.gene020077:CDS |
| TAAATCAGGCACTTTCCAGA+AGG | 0.621084 | 8.2:+79642443 | MS.gene020077:intron |
| AAGTTGACCAACTGCTCCAG+AGG | 0.627539 | 8.2:-79641595 | None:intergenic |
| AAAGAAGGTGATATTGTGTG+GGG | 0.630696 | 8.2:+79640811 | MS.gene020077:CDS |
| TATAATCTTACTCAACCTGA+AGG | 0.645603 | 8.2:+79642569 | MS.gene020077:CDS |
| TGCGAGATCATTCCACACAC+AGG | 0.671185 | 8.2:-79642545 | None:intergenic |
| GATTGAGGAACATAGGCACG+TGG | 0.681415 | 8.2:-79639880 | None:intergenic |
| TGTCCTGTGATCCTTACATG+AGG | 0.684226 | 8.2:+79639824 | MS.gene020077:CDS |
| CATGGTCGCATACCTGTGTG+TGG | 0.685096 | 8.2:+79642533 | MS.gene020077:CDS |
| AAGAAGGTGATATTGTGTGG+GGG | 0.693745 | 8.2:+79640812 | MS.gene020077:CDS |
| ATTGAGGAACATAGGCACGT+GGG | 0.716091 | 8.2:-79639879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATATAAAAAAAAT+TGG | - | chr8.2:79640477-79640496 | None:intergenic | 0.0% |
| !! | TAATAAATATAAAAAAAATT+GGG | - | chr8.2:79640476-79640495 | None:intergenic | 0.0% |
| !!! | TTTATATTTATTATTTTATT+TGG | + | chr8.2:79640483-79640502 | MS.gene020077:intron | 0.0% |
| !!! | TTTGATTATTGTATTTTTTT+GGG | + | chr8.2:79640272-79640291 | MS.gene020077:intron | 10.0% |
| !!! | TTTTGATTATTGTATTTTTT+TGG | + | chr8.2:79640271-79640290 | MS.gene020077:intron | 10.0% |
| !! | AAATGGGAAAATATAAATTT+AGG | - | chr8.2:79641144-79641163 | None:intergenic | 15.0% |
| !! | AACCAAATATTAATGAATAA+AGG | - | chr8.2:79641207-79641226 | None:intergenic | 15.0% |
| !! | AAGATATACATTTAAGTAAA+AGG | - | chr8.2:79642188-79642207 | None:intergenic | 15.0% |
| !! | AATTTAACAAATACTGAAAA+GGG | - | chr8.2:79639925-79639944 | None:intergenic | 15.0% |
| !! | ATCCTTTATTCATTAATATT+TGG | + | chr8.2:79641202-79641221 | MS.gene020077:intron | 15.0% |
| !! | TAATTTAACAAATACTGAAA+AGG | - | chr8.2:79639926-79639945 | None:intergenic | 15.0% |
| !!! | AATAATAATTTGCTAAGAAA+TGG | - | chr8.2:79640034-79640053 | None:intergenic | 15.0% |
| !!! | AATCTTTTTTCTTTAAAACA+TGG | - | chr8.2:79640231-79640250 | None:intergenic | 15.0% |
| !!! | TCTTAGCAAATTATTATTTT+TGG | + | chr8.2:79640036-79640055 | MS.gene020077:intron | 15.0% |
| !!! | TGTTTTAAAGAAAAAAGATT+AGG | + | chr8.2:79640231-79640250 | MS.gene020077:intron | 15.0% |
| !! | AAAAACACAATAAGTCAAAA+AGG | - | chr8.2:79641482-79641501 | None:intergenic | 20.0% |
| !! | AATGAATAAAGGATCAATTT+CGG | - | chr8.2:79641196-79641215 | None:intergenic | 20.0% |
| !! | ACATAAAAAACTATACTTCA+AGG | - | chr8.2:79639951-79639970 | None:intergenic | 20.0% |
| !! | AGAAAATTATGTTTCTTTAG+TGG | + | chr8.2:79640519-79640538 | MS.gene020077:intron | 20.0% |
| !! | ATCAGTTACAAATAACTATA+AGG | - | chr8.2:79641269-79641288 | None:intergenic | 20.0% |
| !! | GAAAATTATGTTTCTTTAGT+GGG | + | chr8.2:79640520-79640539 | MS.gene020077:intron | 20.0% |
| !! | TATACATTTAAGTAAAAGGA+AGG | - | chr8.2:79642184-79642203 | None:intergenic | 20.0% |
| !! | TTTATGTCTATTCATTTCAT+GGG | + | chr8.2:79639964-79639983 | MS.gene020077:intron | 20.0% |
| !!! | TAAAGATAGAAACATTTTCT+TGG | + | chr8.2:79640334-79640353 | MS.gene020077:intron | 20.0% |
| !!! | TAGGTTTTCAATTTTGATTT+TGG | + | chr8.2:79640002-79640021 | MS.gene020077:intron | 20.0% |
| !!! | TATTTTTGTTGAGAATTTGA+AGG | + | chr8.2:79640547-79640566 | MS.gene020077:intron | 20.0% |
| !!! | TTTTATGTCTATTCATTTCA+TGG | + | chr8.2:79639963-79639982 | MS.gene020077:intron | 20.0% |
| ! | ACAAAAATTAGTCACCAAAA+TGG | - | chr8.2:79640200-79640219 | None:intergenic | 25.0% |
| ! | ACAAGTTAAGGAACTAAAAA+AGG | - | chr8.2:79640428-79640447 | None:intergenic | 25.0% |
| ! | ATTGAACAAGAGAAGAAAAT+GGG | - | chr8.2:79641160-79641179 | None:intergenic | 25.0% |
| ! | CTCTTGAATATGAAATTACA+TGG | + | chr8.2:79642515-79642534 | MS.gene020077:CDS | 25.0% |
| ! | GATATCAATTTGTGTAAATC+AGG | + | chr8.2:79642429-79642448 | MS.gene020077:intron | 25.0% |
| ! | GATCTGTTGAAGAATAAATT+TGG | + | chr8.2:79642221-79642240 | MS.gene020077:CDS | 25.0% |
| !! | AATATTTGGTTTACTAGCTT+TGG | + | chr8.2:79641216-79641235 | MS.gene020077:intron | 25.0% |
| !! | TTGCACTTCTCTTAATTTTT+GGG | + | chr8.2:79642063-79642082 | MS.gene020077:intron | 25.0% |
| !! | TTGGAAAATTGAAACCATTT+TGG | + | chr8.2:79640183-79640202 | MS.gene020077:intron | 25.0% |
| !!! | AAAAAAAAAACGTGTCGTTT+CGG | - | chr8.2:79641811-79641830 | None:intergenic | 25.0% |
| !!! | TTCTCTTAATTTTTGGGATA+TGG | + | chr8.2:79642069-79642088 | MS.gene020077:intron | 25.0% |
| !!! | TTGTGTTTTTGTTTGAAAAC+AGG | + | chr8.2:79641492-79641511 | MS.gene020077:intron | 25.0% |
| AAAAACATTCTCTCCTTTCT+TGG | - | chr8.2:79641565-79641584 | None:intergenic | 30.0% | |
| AAAACATTCTCTCCTTTCTT+GGG | - | chr8.2:79641564-79641583 | None:intergenic | 30.0% | |
| ACGACACAAAAATGAATTTC+TGG | - | chr8.2:79642136-79642155 | None:intergenic | 30.0% | |
| ATAAAGAAGGTGATATTGTG+TGG | + | chr8.2:79640809-79640828 | MS.gene020077:CDS | 30.0% | |
| ATATTGAGGTCTGATTCTTT+AGG | - | chr8.2:79639733-79639752 | None:intergenic | 30.0% | |
| CACAATAATACACTTGATGT+CGG | + | chr8.2:79640978-79640997 | MS.gene020077:intron | 30.0% | |
| CATTGAACAAGAGAAGAAAA+TGG | - | chr8.2:79641161-79641180 | None:intergenic | 30.0% | |
| CTGTTTAGTATTGTAACAGA+CGG | + | chr8.2:79641056-79641075 | MS.gene020077:intron | 30.0% | |
| GGAATAAGAATTGTTCTAGT+CGG | + | chr8.2:79640142-79640161 | MS.gene020077:intron | 30.0% | |
| GGACACAAAGATTATAAAGA+AGG | + | chr8.2:79640796-79640815 | MS.gene020077:CDS | 30.0% | |
| TAAAGAAGGTGATATTGTGT+GGG | + | chr8.2:79640810-79640829 | MS.gene020077:CDS | 30.0% | |
| TATGTCTATTCCTTCAATGA+TGG | - | chr8.2:79641087-79641106 | None:intergenic | 30.0% | |
| TCAGTTTATAACAGATTTGC+AGG | + | chr8.2:79642302-79642321 | MS.gene020077:intron | 30.0% | |
| TGTTTAGTATTGTAACAGAC+GGG | + | chr8.2:79641057-79641076 | MS.gene020077:intron | 30.0% | |
| TTCCTCAATCTGTAAGTTTA+TGG | + | chr8.2:79639893-79639912 | MS.gene020077:intron | 30.0% | |
| TTGCTCTTCTTTGTAGTTAA+TGG | - | chr8.2:79642258-79642277 | None:intergenic | 30.0% | |
| TTTAACCAAAACAACATCGT+TGG | - | chr8.2:79639794-79639813 | None:intergenic | 30.0% | |
| TTTCTTCTCTTGTTCAATGA+AGG | + | chr8.2:79641162-79641181 | MS.gene020077:intron | 30.0% | |
| ! | ACACAAAAATGAATTTCTGG+AGG | - | chr8.2:79642133-79642152 | None:intergenic | 30.0% |
| ! | CTTGTTCAATGAAGGTTTTA+TGG | + | chr8.2:79641170-79641189 | MS.gene020077:intron | 30.0% |
| ! | GGAACTTGTGTATTCATTTT+TGG | + | chr8.2:79640355-79640374 | MS.gene020077:intron | 30.0% |
| ! | GTTGCACTTCTCTTAATTTT+TGG | + | chr8.2:79642062-79642081 | MS.gene020077:intron | 30.0% |
| ! | TTGTTTTCTCAACTGATTAC+CGG | + | chr8.2:79641882-79641901 | MS.gene020077:intron | 30.0% |
| !! | TGGGTCAATTTGTTATTAGT+AGG | + | chr8.2:79639983-79640002 | MS.gene020077:intron | 30.0% |
| !! | TTCTTTAAAACATGGAGAGT+TGG | - | chr8.2:79640223-79640242 | None:intergenic | 30.0% |
| !!! | AATTTGTTGTTTTAACCCTC+TGG | + | chr8.2:79640064-79640083 | MS.gene020077:intron | 30.0% |
| !!! | ACGGTAACTATACGTTTTTT+TGG | - | chr8.2:79642377-79642396 | None:intergenic | 30.0% |
| !!! | ACTTTTTAACTTGTGCCTTA+AGG | - | chr8.2:79640314-79640333 | None:intergenic | 30.0% |
| !!! | CTTTTTAACTTGTGCCTTAA+GGG | - | chr8.2:79640313-79640332 | None:intergenic | 30.0% |
| !!! | TCAGTTTCATTTTTAAGTCG+CGG | + | chr8.2:79640648-79640667 | MS.gene020077:intron | 30.0% |
| AAAGAAGGTGATATTGTGTG+GGG | + | chr8.2:79640811-79640830 | MS.gene020077:CDS | 35.0% | |
| AACCATGCAATTTAGCGAAT+TGG | - | chr8.2:79641626-79641645 | None:intergenic | 35.0% | |
| AATGTATATCTTCTGCAACC+AGG | + | chr8.2:79642196-79642215 | MS.gene020077:intron | 35.0% | |
| ACGTGAGAAACACTACTAAT+AGG | + | chr8.2:79642404-79642423 | MS.gene020077:intron | 35.0% | |
| ACTTACAGATTGAGGAACAT+AGG | - | chr8.2:79639890-79639909 | None:intergenic | 35.0% | |
| AGCCATAAACTTACAGATTG+AGG | - | chr8.2:79639898-79639917 | None:intergenic | 35.0% | |
| ATAGCATGCATGTAAGCTTA+TGG | + | chr8.2:79641421-79641440 | MS.gene020077:intron | 35.0% | |
| ATGCCAGTATAGTATGAAAG+AGG | - | chr8.2:79640910-79640929 | None:intergenic | 35.0% | |
| ATTACAGTACTTGTGTACAC+AGG | - | chr8.2:79641925-79641944 | None:intergenic | 35.0% | |
| CGGTACTGTCAATAATATTG+AGG | - | chr8.2:79639747-79639766 | None:intergenic | 35.0% | |
| GATTACGAACTTGGATTCTT+TGG | + | chr8.2:79640164-79640183 | MS.gene020077:intron | 35.0% | |
| GTTCCTCTTTCATACTATAC+TGG | + | chr8.2:79640904-79640923 | MS.gene020077:CDS | 35.0% | |
| TAATTGAAGAGAGTTGTAGC+AGG | + | chr8.2:79642017-79642036 | MS.gene020077:intron | 35.0% | |
| TCATACTATACTGGCATTCT+TGG | + | chr8.2:79640913-79640932 | MS.gene020077:CDS | 35.0% | |
| TGAAATGTATTTGAGCTGCA+GGG | - | chr8.2:79640867-79640886 | None:intergenic | 35.0% | |
| TGAGAAACACTACTAATAGG+TGG | + | chr8.2:79642407-79642426 | MS.gene020077:intron | 35.0% | |
| TGATATGAACGCGTCAAATT+AGG | + | chr8.2:79641003-79641022 | MS.gene020077:intron | 35.0% | |
| TGCTACAACTCTCTTCAATT+AGG | - | chr8.2:79642018-79642037 | None:intergenic | 35.0% | |
| TGTTTCTCACGTTACAAACA+CGG | - | chr8.2:79642396-79642415 | None:intergenic | 35.0% | |
| TTCCGACTTTATTAATCTCC+CGG | - | chr8.2:79640126-79640145 | None:intergenic | 35.0% | |
| TTGAAATGTATTTGAGCTGC+AGG | - | chr8.2:79640868-79640887 | None:intergenic | 35.0% | |
| TTGTATTGTGCAGTTACTGA+TGG | + | chr8.2:79640719-79640738 | MS.gene020077:intron | 35.0% | |
| ! | AGGACTTCGATTAAAAGTGT+GGG | - | chr8.2:79641773-79641792 | None:intergenic | 35.0% |
| ! | TTATGGTGTGTCTAAAGTTC+TGG | + | chr8.2:79640768-79640787 | MS.gene020077:CDS | 35.0% |
| ! | TTCTGGAAGCTTAAGACTTA+CGG | - | chr8.2:79639767-79639786 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr8.2:79640296-79640315 | MS.gene020077:intron | 35.0% |
| !! | GTTTACTAGCTTTGGTTTGA+AGG | + | chr8.2:79641224-79641243 | MS.gene020077:intron | 35.0% |
| !! | TGTAATCACTTGTGTCGTTT+CGG | - | chr8.2:79641852-79641871 | None:intergenic | 35.0% |
| AAGAAGGTGATATTGTGTGG+GGG | + | chr8.2:79640812-79640831 | MS.gene020077:CDS | 40.0% | |
| AAGTAAACGTCAATGCCTTC+TGG | - | chr8.2:79642461-79642480 | None:intergenic | 40.0% | |
| AGAATTGCGAATTACCAGGA+AGG | - | chr8.2:79640099-79640118 | None:intergenic | 40.0% | |
| AGCCGGGAGATTAATAAAGT+CGG | + | chr8.2:79640121-79640140 | MS.gene020077:intron | 40.0% | |
| ATGTAATTGCAGCCGATAAC+TGG | + | chr8.2:79640745-79640764 | MS.gene020077:intron | 40.0% | |
| CAGGACTTCGATTAAAAGTG+TGG | - | chr8.2:79641774-79641793 | None:intergenic | 40.0% | |
| CTCATAAGAGTCCTCATGTA+AGG | - | chr8.2:79639838-79639857 | None:intergenic | 40.0% | |
| GACACACCATAACCAGTTAT+CGG | - | chr8.2:79640760-79640779 | None:intergenic | 40.0% | |
| GTAAGTCTTAAGCTTCCAGA+AGG | + | chr8.2:79639766-79639785 | MS.gene020077:CDS | 40.0% | |
| TAAATCAGGCACTTTCCAGA+AGG | + | chr8.2:79642443-79642462 | MS.gene020077:intron | 40.0% | |
| TATTCTTCAACAGATCCACC+TGG | - | chr8.2:79642217-79642236 | None:intergenic | 40.0% | |
| TGAAGGAACTGCTGGATATA+GGG | + | chr8.2:79640564-79640583 | MS.gene020077:intron | 40.0% | |
| TGAGAATTTGAAGGAACTGC+TGG | + | chr8.2:79640556-79640575 | MS.gene020077:intron | 40.0% | |
| TGTGTGGGGGATAACTAATT+GGG | + | chr8.2:79640825-79640844 | MS.gene020077:CDS | 40.0% | |
| TGTTTGAAAACAGGTATGCC+AGG | + | chr8.2:79641501-79641520 | MS.gene020077:intron | 40.0% | |
| TTCTAGTCGGATTACGAACT+TGG | + | chr8.2:79640155-79640174 | MS.gene020077:intron | 40.0% | |
| TTGAAGGAACTGCTGGATAT+AGG | + | chr8.2:79640563-79640582 | MS.gene020077:intron | 40.0% | |
| TTGTGTGGGGGATAACTAAT+TGG | + | chr8.2:79640824-79640843 | MS.gene020077:CDS | 40.0% | |
| ! | GACGTTTACTTTGAGAACGT+TGG | + | chr8.2:79642470-79642489 | MS.gene020077:CDS | 40.0% |
| ! | GTCAAAAAGGCACAACAGAA+TGG | - | chr8.2:79641469-79641488 | None:intergenic | 40.0% |
| ! | GTTTACTTTGAGAACGTTGG+AGG | + | chr8.2:79642473-79642492 | MS.gene020077:CDS | 40.0% |
| !! | AGGTTCCAACGATGTTGTTT+TGG | + | chr8.2:79639786-79639805 | MS.gene020077:CDS | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | - | chr8.2:79640452-79640471 | None:intergenic | 40.0% |
| !! | CTTCTGAAACATTACGTGTC+TGG | + | chr8.2:79639703-79639722 | MS.gene020077:CDS | 40.0% |
| !! | GATTCTGGTTTCTTCGAAGT+AGG | + | chr8.2:79641534-79641553 | MS.gene020077:CDS | 40.0% |
| !! | GTAATCACTTGTGTCGTTTC+GGG | - | chr8.2:79641851-79641870 | None:intergenic | 40.0% |
| !! | GTGTCTAAAGTTCTGGAATC+TGG | + | chr8.2:79640775-79640794 | MS.gene020077:CDS | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | - | chr8.2:79640453-79640472 | None:intergenic | 40.0% |
| !! | TTCCTTAACTTGTGCCCTTA+GGG | + | chr8.2:79640435-79640454 | MS.gene020077:intron | 40.0% |
| !!! | GTGGGTTGATAGAAGCTTTT+GGG | - | chr8.2:79639864-79639883 | None:intergenic | 40.0% |
| ACAACATCGTTGGAACCTTC+TGG | - | chr8.2:79639784-79639803 | None:intergenic | 45.0% | |
| AGTCCTCATGTAAGGATCAC+AGG | - | chr8.2:79639830-79639849 | None:intergenic | 45.0% | |
| ATTGAGGAACATAGGCACGT+GGG | - | chr8.2:79639882-79639901 | None:intergenic | 45.0% | |
| CTACAAAGAAGAGCAAGACC+TGG | + | chr8.2:79642262-79642281 | MS.gene020077:CDS | 45.0% | |
| CTGCAGAATTGCGAATTACC+AGG | - | chr8.2:79640103-79640122 | None:intergenic | 45.0% | |
| GACATATTGTGTGAGAGAGC+TGG | + | chr8.2:79641101-79641120 | MS.gene020077:intron | 45.0% | |
| GGCCAATTCGCTAAATTGCA+TGG | + | chr8.2:79641621-79641640 | MS.gene020077:CDS | 45.0% | |
| GTAATTCGCAATTCTGCAGC+CGG | + | chr8.2:79640104-79640123 | MS.gene020077:intron | 45.0% | |
| GTATATCTTCTGCAACCAGG+TGG | + | chr8.2:79642199-79642218 | MS.gene020077:intron | 45.0% | |
| TAATTCGCAATTCTGCAGCC+GGG | + | chr8.2:79640105-79640124 | MS.gene020077:intron | 45.0% | |
| TGTCCTGTGATCCTTACATG+AGG | + | chr8.2:79639824-79639843 | MS.gene020077:CDS | 45.0% | |
| TTGCAGCCGATAACTGGTTA+TGG | + | chr8.2:79640751-79640770 | MS.gene020077:intron | 45.0% | |
| TTGCATGGTTGCTATGTCGT+TGG | + | chr8.2:79641636-79641655 | MS.gene020077:CDS | 45.0% | |
| ! | ACCTGGATGCAGCATTGAAA+AGG | + | chr8.2:79642279-79642298 | MS.gene020077:CDS | 45.0% |
| ! | ACCTTTTCAATGCTGCATCC+AGG | - | chr8.2:79642283-79642302 | None:intergenic | 45.0% |
| !! | AAGTGCTGGAAGTAAGGAGA+AGG | + | chr8.2:79641659-79641678 | MS.gene020077:CDS | 45.0% |
| !! | GTTCCTTAACTTGTGCCCTT+AGG | + | chr8.2:79640434-79640453 | MS.gene020077:intron | 45.0% |
| !! | GTTTTTGTTTCAGCTGCCTC+TGG | + | chr8.2:79641579-79641598 | MS.gene020077:CDS | 45.0% |
| !! | TTCGGTGTCAGATTTCAGAC+AGG | - | chr8.2:79641793-79641812 | None:intergenic | 45.0% |
| !!! | CGTGGGTTGATAGAAGCTTT+TGG | - | chr8.2:79639865-79639884 | None:intergenic | 45.0% |
| !!! | TTGTTTTAACCCTCTGGTCC+TGG | + | chr8.2:79640070-79640089 | MS.gene020077:intron | 45.0% |
| AAGTTGACCAACTGCTCCAG+AGG | - | chr8.2:79641598-79641617 | None:intergenic | 50.0% | |
| CCAGAATCAGCAGTCATTCC+TGG | - | chr8.2:79641522-79641541 | None:intergenic | 50.0% | |
| GAAGTAGGCTCTCCCAAGAA+AGG | + | chr8.2:79641549-79641568 | MS.gene020077:CDS | 50.0% | |
| GATTGAGGAACATAGGCACG+TGG | - | chr8.2:79639883-79639902 | None:intergenic | 50.0% | |
| GGAGCAGTTGGTCAACTTGT+TGG | + | chr8.2:79641600-79641619 | MS.gene020077:CDS | 50.0% | |
| TGCGAGATCATTCCACACAC+AGG | - | chr8.2:79642548-79642567 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | - | chr8.2:79640440-79640459 | None:intergenic | 50.0% |
| ! | TGCTATGTCGTTGGAAGTGC+TGG | + | chr8.2:79641645-79641664 | MS.gene020077:CDS | 50.0% |
| ! | TTTTAACCCTCTGGTCCTGG+TGG | + | chr8.2:79640073-79640092 | MS.gene020077:intron | 50.0% |
| !! | CCAGGAATGACTGCTGATTC+TGG | + | chr8.2:79641519-79641538 | MS.gene020077:CDS | 50.0% |
| !! | CGTTGGAAGTGCTGGAAGTA+AGG | + | chr8.2:79641653-79641672 | MS.gene020077:CDS | 50.0% |
| !! | GACGGGTTAGCCATCATTGA+AGG | + | chr8.2:79641074-79641093 | MS.gene020077:intron | 50.0% |
| CATGGTCGCATACCTGTGTG+TGG | + | chr8.2:79642533-79642552 | MS.gene020077:CDS | 55.0% | |
| GAATTACCAGGAAGGCCACC+AGG | - | chr8.2:79640091-79640110 | None:intergenic | 55.0% | |
| GGACACTGACACGTCAACAC+CGG | - | chr8.2:79641904-79641923 | None:intergenic | 55.0% | |
| GTGTGAGAGAGCTGGTTGTC+TGG | + | chr8.2:79641109-79641128 | MS.gene020077:intron | 55.0% | |
| !! | TCAGCTGCCTCTGGAGCAGT+TGG | + | chr8.2:79641588-79641607 | MS.gene020077:CDS | 60.0% |
| AGGAAGGCCACCAGGACCAG+AGG | - | chr8.2:79640083-79640102 | None:intergenic | 65.0% | |
| GGAAGGCCACCAGGACCAGA+GGG | - | chr8.2:79640082-79640101 | None:intergenic | 65.0% | |
| TCTGGTCCTGGTGGCCTTCC+TGG | + | chr8.2:79640082-79640101 | MS.gene020077:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 79639676 | 79642590 | 79639676 | ID=MS.gene020077 |
| chr8.2 | mRNA | 79639676 | 79642590 | 79639676 | ID=MS.gene020077.t1;Parent=MS.gene020077 |
| chr8.2 | exon | 79639676 | 79639903 | 79639676 | ID=MS.gene020077.t1.exon1;Parent=MS.gene020077.t1 |
| chr8.2 | CDS | 79639676 | 79639903 | 79639676 | ID=cds.MS.gene020077.t1;Parent=MS.gene020077.t1 |
| chr8.2 | exon | 79640757 | 79640934 | 79640757 | ID=MS.gene020077.t1.exon2;Parent=MS.gene020077.t1 |
| chr8.2 | CDS | 79640757 | 79640934 | 79640757 | ID=cds.MS.gene020077.t1;Parent=MS.gene020077.t1 |
| chr8.2 | exon | 79641514 | 79641680 | 79641514 | ID=MS.gene020077.t1.exon3;Parent=MS.gene020077.t1 |
| chr8.2 | CDS | 79641514 | 79641680 | 79641514 | ID=cds.MS.gene020077.t1;Parent=MS.gene020077.t1 |
| chr8.2 | exon | 79642218 | 79642300 | 79642218 | ID=MS.gene020077.t1.exon4;Parent=MS.gene020077.t1 |
| chr8.2 | CDS | 79642218 | 79642300 | 79642218 | ID=cds.MS.gene020077.t1;Parent=MS.gene020077.t1 |
| chr8.2 | exon | 79642451 | 79642590 | 79642451 | ID=MS.gene020077.t1.exon5;Parent=MS.gene020077.t1 |
| chr8.2 | CDS | 79642451 | 79642590 | 79642451 | ID=cds.MS.gene020077.t1;Parent=MS.gene020077.t1 |
| Gene Sequence |
| Protein sequence |
