AlfalfaGEDB | MS.gene07005

M. sativa cultivar XinJiangDaYe / MS.gene07005

KEGG: K01051
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030599 GO:0042545 GO:0045229 GO:0052689 GO:0071554 GO:0071555 GO:0071840
PFAM: PF01095.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07005.t1	XP_013450374.1	98	348	7	0	1	348	217	564	6.00E-198	699.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07005.t1	Q8RXK7	68.8	349	104	2	1	347	227	572	3.4e-141	502.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07005.t1	A0A072U3Z0	98.0	348	7	0	1	348	217	564	4.3e-198	699.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050381	MS.gene07005	0.833125	6.38E-56	-1.69E-46
MS.gene050720	MS.gene07005	0.809834	1.56E-50	-1.69E-46
MS.gene050883	MS.gene07005	0.812534	4.04E-51	-1.69E-46
MS.gene051044	MS.gene07005	0.817362	3.43E-52	-1.69E-46
MS.gene051127	MS.gene07005	0.822519	2.27E-53	-1.69E-46
MS.gene051138	MS.gene07005	0.822973	1.78E-53	-1.69E-46
MS.gene051946	MS.gene07005	0.808786	2.61E-50	-1.69E-46
MS.gene053488	MS.gene07005	0.80399	2.68E-49	-1.69E-46
MS.gene053561	MS.gene07005	0.80913	2.20E-50	-1.69E-46
MS.gene054056	MS.gene07005	0.802449	5.58E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07005.t1	MTR_7g108890	97.989	348	7	0	1	348	217	564	0.0	716
MS.gene07005.t1	MTR_1g054880	81.844	347	62	1	1	347	214	559	0.0	600
MS.gene07005.t1	MTR_1g088020	80.802	349	64	2	1	347	209	556	0.0	580
MS.gene07005.t1	MTR_1g088225	79.943	349	65	3	1	347	209	554	0.0	569
MS.gene07005.t1	MTR_7g108875	74.499	349	84	2	1	347	220	565	0.0	540
MS.gene07005.t1	MTR_7g108900	72.126	348	93	3	1	346	215	560	0.0	527
MS.gene07005.t1	MTR_0458s0030	83.019	265	45	0	83	347	51	315	3.52e-169	474
MS.gene07005.t1	MTR_1g088040	83.019	265	45	0	83	347	51	315	3.52e-169	474
MS.gene07005.t1	MTR_1g083520	65.569	334	111	2	16	346	196	528	8.36e-160	458
MS.gene07005.t1	MTR_8g042910	63.253	332	122	0	15	346	281	612	1.76e-153	445

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07005.t1	AT4G02330	68.768	349	104	2	1	347	227	572	4.97e-179	508
MS.gene07005.t1	AT2G47550	67.723	347	109	1	1	347	216	559	7.13e-174	495
MS.gene07005.t1	AT1G02810	66.097	351	115	1	1	347	228	578	2.00e-173	494
MS.gene07005.t1	AT3G10720	60.479	334	132	0	14	347	283	616	9.57e-150	436
MS.gene07005.t1	AT5G04970	58.084	334	140	0	14	347	288	621	1.29e-139	410
MS.gene07005.t1	AT2G45220	59.091	330	121	6	18	346	195	511	5.95e-133	389
MS.gene07005.t1	AT3G10720	63.077	260	96	0	88	347	1	260	2.27e-126	363
MS.gene07005.t1	AT1G11580	55.828	326	140	2	18	342	231	553	2.44e-126	374
MS.gene07005.t1	AT3G43270	55.589	331	140	4	18	347	202	526	6.08e-126	372
MS.gene07005.t1	AT1G11580	55.828	326	140	2	18	342	252	574	6.23e-126	373

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Find 63 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAGTACTTGATGA+TGG	0.536365	7.2:-5256604	MS.gene07005:CDS
AAACATACCTTGGTAGGCCA+TGG	0.560177	7.2:-5254867	MS.gene07005:CDS
AAACGTTGCACCAAATAACA+CGG	0.679707	7.2:-5256697	MS.gene07005:CDS
AACAATTGATGAAAGTGTTA+CGG	0.454527	7.2:-5256784	MS.gene07005:CDS
AAGAAGTACTTGATGATGGT+TGG	0.510321	7.2:-5256600	MS.gene07005:CDS
AAGCAAACACCAAGCAGTCG+CGG	0.652116	7.2:-5255199	MS.gene07005:CDS
AAGTATGAAACACCAGTTTG+AGG	0.552647	7.2:+5254604	None:intergenic
AATAACACGGTTGCTAGTAG+TGG	0.598741	7.2:-5256684	MS.gene07005:CDS
ACAGATCCAAATCAAAACAC+AGG	0.659080	7.2:-5254955	MS.gene07005:CDS
ACGTTCAATTCAGCAACATT+TGG	0.449707	7.2:-5256519	MS.gene07005:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCATGAACCGTATTATA+AGG	-	chr7.2:5255266-5255285	MS.gene07005:intron	30.0%
ATACCAAGAAATACACTTTG+AGG	+	chr7.2:5256075-5256094	None:intergenic	30.0%
ATACTAGTATGAGAGTGAAT+TGG	-	chr7.2:5256729-5256748	MS.gene07005:CDS	30.0%
ATTAATCGAACGATTATCAC+TGG	-	chr7.2:5254864-5254883	MS.gene07005:CDS	30.0%
ATTGTGATTGTTAACCAAGA+TGG	-	chr7.2:5254681-5254700	MS.gene07005:CDS	30.0%
GAGTATAATAATACAGGACT+TGG	-	chr7.2:5256701-5256720	MS.gene07005:CDS	30.0%
GGTGATCATAATGTTATTGA+TGG	-	chr7.2:5254885-5254904	MS.gene07005:CDS	30.0%
TAAAATTTCCACTTCCATCT+TGG	+	chr7.2:5254698-5254717	None:intergenic	30.0%
TAACATAACATTTCGCAACA+CGG	-	chr7.2:5256205-5256224	MS.gene07005:intron	30.0%
TCATGCATATGCTATAAGTA+AGG	+	chr7.2:5255167-5255186	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	5254585	5256871	5254585	ID=MS.gene07005
chr7.2	mRNA	5254585	5256871	5254585	ID=MS.gene07005.t1;Parent=MS.gene07005
chr7.2	exon	5256520	5256871	5256520	ID=MS.gene07005.t1.exon1;Parent=MS.gene07005.t1
chr7.2	CDS	5256520	5256871	5256520	ID=cds.MS.gene07005.t1;Parent=MS.gene07005.t1
chr7.2	exon	5254585	5255279	5254585	ID=MS.gene07005.t1.exon2;Parent=MS.gene07005.t1
chr7.2	CDS	5254585	5255279	5254585	ID=cds.MS.gene07005.t1;Parent=MS.gene07005.t1

Gene Sequence

>MS.gene07005

ATGTCAGATAAAGTACGTGCTATTTATGATTCAGCTAGAAATCGTCATGGGCGAAAGTTACTTCAAACAATTGATGAAAGTGTTACGGTAAGTGAAATTGTGATTGTTAACCAAGATGGAAGTGGAAATTTTACAACTATTAATGATGCTATAAACGTTGCACCAAATAACACGGTTGCTAGTAGTGGTTACTTTCTGATTTTTGTTACTGAGGGTGTGTATCAAGAGTATGTATCTATACCCAAAAACAAGAAGTACTTGATGATGGTTGGAGATGGGATTAATCGAACGATTATCACTGGTGATCATAATGTTATTGATGGTTCTACAACGTTCAATTCAGCAACATTTGGTAAGCAAAACATTTGTTAATTTAGTTATACTCAACTCAAGTCAAGTATACGATAATTGATTGATGTCATTAATATTACAAGCAACACGTATCCATGCGCATGAGTACGCTTAGAGTTAAACCAATCAAAAGCTAGCTAGCATCAAAAGTCACGTTGAGTTTTTTAAAAACTAGTATTATCTTGACTAATTGATTCTCATAACCACTTTACTTAAACATGAATTATTCCTTACTTATAGCATATGCATGAAAATTAATTTATCACATGTATTTAGGATTATGTGGTTATTGACAAATAATAAAATATATGACCCTCCCTCAAAAAATAAAATGCATGAACCGTATTATAAGGAAAAAAAATTGGTGTATTTTGTTGTCCTTATTATAAAAAAAAAATAAAGTCATTTGAGAGTGCATTAATTGCTAAAAAAAAACTATATAATTCTATTAAATGCAAGATATATAATGCTAAAAACTTTTCCTGGAAAAAGAAATACTGAAAACTTATATAGTTAATATAAAATAGGGAAATGCTCTTTCTCACCGACTACAACATCATGACAACTAATGTGTAAGATTATTCAAACTTCACATCTACTCTCTCGTGTTTTCCGTTAAACAAGACTTTGAAAGTTTGACTACTCTTTTGAACGCTGGCACGTATTGTTTTGTCAATCACGTTCGAGACATAGAACAGTTGAATATAAATATTTAATGATAGAGATGTATATATATGAAATAACATTTCAAATATATAATATCAAATAAACATTTTTTTTTATGGATCATCAAAACTTCTTAGTCTATGTTATTTTTGTAATTGTTGACCATGACCAGAGTGAGTATATTTTTAATAGTGCTTGTTTTAATACTATTTTATTGTGATTTTCTATTTAATTTGATCAAATTCAAGTATATATGATCATCTCTTGGTCGATATTTAGTAAGTTTTTTTTATAAGGGATATTTGGTAGTTCATGCATACAACTTTTTTTTATTGGTTTAACGTTTCTCTATGCTAGCCTAAATTCAATCACACTTAATCCATTCATAAGTCATTTTCTTTACTCCTTTATAAAATCACACTTAATCCATCTAGATTACTACCTTACAAAATCATCCATCTAGATTACTACCTCAAAGTGTATTTCTTGGTATAATGTGTAGTTTGAATTTGTTGTATAAATTTTGTACATGTGCTTGAATAATCCTTTATGCTCACTTTATGATATACTTGCAGCTGTGGTTGCACAAGGGTTCTTAGCGGTTAACATAACATTTCGCAACACGGCTGGACCAAGCAAACACCAAGCAGTCGCGGTAAGAAACGGAGCTGATTTGTCCACCTTCTACAGCTGCAGCTTCGAAGGCTATCAAGATACTTTGTACACACATTCCATGAGACAATTTTATCGCGAATGCGACATCTATGGAACAGTTGACTTCATATTTGGAAATGCTGCAGTTGTTTTACAATCTTGCAACATATATCCCCGACTTCCCAGCAGTGGACAATTCAACGCTATAACCGCTCAAGGTCGAACAGATCCAAATCAAAACACAGGAACTTCTATACATAATGCAACTATAAAAGCTAGTGATGATTTGGCTCCGTTGATTGGTACAGTGAAAACATACCTTGGTAGGCCATGGAAGGAGTACTCAAGGACAGTTTATATGGAATGTTTTATGGACAGTTTGATAAATCCTTCTGGTTGGCGTGAATGGAGTGGGAATTTTGCATTAAGCACATTATATTATGCAGAGTATAATAATACAGGACTTGGTTCAGATACTAGTATGAGAGTGAATTGGATTGGTTATCATCTTATTAATGCTACTGATGCTGCTAATTTTACAGTGGATAACTTTTTGGATGGGGATAGTTGGTTGCCTCAAACTGGTGTTTCATACTTGAGTGGATTGATCATATAA

Protein sequence

>MS.gene07005.t1

MSDKVRAIYDSARNRHGRKLLQTIDESVTVSEIVIVNQDGSGNFTTINDAINVAPNNTVASSGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVIDGSTTFNSATFAVVAQGFLAVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQSCNIYPRLPSSGQFNAITAQGRTDPNQNTGTSIHNATIKASDDLAPLIGTVKTYLGRPWKEYSRTVYMECFMDSLINPSGWREWSGNFALSTLYYAEYNNTGLGSDTSMRVNWIGYHLINATDAANFTVDNFLDGDSWLPQTGVSYLSGLII