Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072509.t1 | GAU11476.1 | 87.5 | 319 | 39 | 1 | 1 | 319 | 1 | 318 | 7.70E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072509.t1 | I6YGS0 | 36.9 | 317 | 186 | 5 | 7 | 316 | 7 | 316 | 2.7e-52 | 207.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072509.t1 | A2Q320 | 84.6 | 319 | 49 | 0 | 1 | 319 | 1 | 319 | 2.0e-162 | 581.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050917 | MS.gene072509 | 0.926746 | 3.07E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072509 | MS.gene066361 | PPI |
| MS.gene066360 | MS.gene072509 | PPI |
| MS.gene072509 | MS.gene071500 | PPI |
| MS.gene89620 | MS.gene072509 | PPI |
| MS.gene072509 | MS.gene041604 | PPI |
| MS.gene072509 | MS.gene77823 | PPI |
| MS.gene072509 | MS.gene025707 | PPI |
| MS.gene072509 | MS.gene22955 | PPI |
| MS.gene072509 | MS.gene035369 | PPI |
| MS.gene072509 | MS.gene76453 | PPI |
| MS.gene072509 | MS.gene035373 | PPI |
| MS.gene072509 | MS.gene07001 | PPI |
| MS.gene035367 | MS.gene072509 | PPI |
| MS.gene072509 | MS.gene012063 | PPI |
| MS.gene072509 | MS.gene035371 | PPI |
| MS.gene072509 | MS.gene071502 | PPI |
| MS.gene072509 | MS.gene071504 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072509.t1 | MTR_7g113020 | 84.639 | 319 | 49 | 0 | 1 | 319 | 1 | 319 | 0.0 | 568 |
| MS.gene072509.t1 | MTR_7g113050 | 82.759 | 319 | 55 | 0 | 1 | 319 | 1 | 319 | 0.0 | 566 |
| MS.gene072509.t1 | MTR_7g113030 | 82.445 | 319 | 56 | 0 | 1 | 319 | 1 | 319 | 0.0 | 563 |
| MS.gene072509.t1 | MTR_7g112620 | 81.818 | 319 | 58 | 0 | 1 | 319 | 1 | 319 | 0.0 | 559 |
| MS.gene072509.t1 | MTR_7g112615 | 81.191 | 319 | 60 | 0 | 1 | 319 | 1 | 319 | 0.0 | 553 |
| MS.gene072509.t1 | MTR_7g112960 | 72.897 | 321 | 83 | 2 | 1 | 319 | 1 | 319 | 5.42e-179 | 497 |
| MS.gene072509.t1 | MTR_7g112963 | 73.832 | 321 | 80 | 2 | 1 | 319 | 1 | 319 | 2.35e-177 | 493 |
| MS.gene072509.t1 | MTR_4g005160 | 71.207 | 323 | 88 | 3 | 1 | 319 | 1 | 322 | 9.59e-175 | 487 |
| MS.gene072509.t1 | MTR_7g112970 | 71.160 | 319 | 89 | 2 | 1 | 319 | 1 | 316 | 3.24e-174 | 485 |
| MS.gene072509.t1 | MTR_7g113050 | 83.193 | 238 | 40 | 0 | 1 | 238 | 1 | 238 | 4.49e-154 | 431 |
| MS.gene072509.t1 | MTR_7g112615 | 81.933 | 238 | 43 | 0 | 1 | 238 | 1 | 238 | 1.40e-151 | 425 |
| MS.gene072509.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 3.27e-147 | 427 |
| MS.gene072509.t1 | MTR_4g120240 | 61.059 | 321 | 121 | 3 | 1 | 319 | 37 | 355 | 2.46e-142 | 406 |
| MS.gene072509.t1 | MTR_7g108825 | 56.740 | 319 | 136 | 2 | 1 | 319 | 1 | 317 | 3.83e-134 | 384 |
| MS.gene072509.t1 | MTR_7g112910 | 70.281 | 249 | 19 | 5 | 72 | 319 | 1 | 195 | 2.60e-111 | 321 |
| MS.gene072509.t1 | MTR_8g076680 | 46.708 | 319 | 166 | 3 | 1 | 319 | 3 | 317 | 1.57e-103 | 306 |
| MS.gene072509.t1 | MTR_7g108825 | 56.723 | 238 | 101 | 2 | 1 | 238 | 1 | 236 | 7.01e-97 | 286 |
| MS.gene072509.t1 | MTR_7g112615 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 1.43e-95 | 280 |
| MS.gene072509.t1 | MTR_1g083480 | 73.585 | 159 | 38 | 2 | 1 | 156 | 1 | 158 | 1.58e-82 | 247 |
| MS.gene072509.t1 | MTR_8g076680 | 48.319 | 238 | 121 | 2 | 1 | 238 | 3 | 238 | 1.94e-82 | 249 |
| MS.gene072509.t1 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 1.45e-66 | 211 |
| MS.gene072509.t1 | MTR_2g090245 | 36.760 | 321 | 189 | 7 | 1 | 318 | 1 | 310 | 4.84e-64 | 205 |
| MS.gene072509.t1 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 8.86e-62 | 199 |
| MS.gene072509.t1 | MTR_4g089040 | 34.579 | 321 | 195 | 6 | 1 | 318 | 1 | 309 | 2.65e-59 | 192 |
| MS.gene072509.t1 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 7.64e-57 | 187 |
| MS.gene072509.t1 | MTR_3g024250 | 72.897 | 107 | 29 | 0 | 46 | 152 | 1 | 107 | 2.34e-53 | 171 |
| MS.gene072509.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 2.78e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072509.t1 | AT3G05600 | 61.111 | 324 | 121 | 4 | 1 | 319 | 1 | 324 | 5.00e-149 | 422 |
| MS.gene072509.t1 | AT4G02340 | 56.386 | 321 | 133 | 4 | 1 | 319 | 1 | 316 | 3.19e-134 | 384 |
| MS.gene072509.t1 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 1.32e-125 | 364 |
| MS.gene072509.t1 | AT2G26740 | 59.317 | 322 | 124 | 4 | 4 | 319 | 1 | 321 | 8.06e-125 | 360 |
| MS.gene072509.t1 | AT2G26750 | 57.632 | 321 | 130 | 4 | 4 | 319 | 1 | 320 | 1.27e-119 | 347 |
| MS.gene072509.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 3.78e-109 | 317 |
| MS.gene072509.t1 | AT4G15955 | 51.077 | 325 | 123 | 5 | 5 | 319 | 6 | 304 | 7.26e-106 | 311 |
| MS.gene072509.t1 | AT3G51000 | 44.954 | 327 | 159 | 6 | 3 | 319 | 4 | 319 | 1.28e-97 | 291 |
| MS.gene072509.t1 | AT4G15955 | 57.471 | 174 | 64 | 2 | 5 | 168 | 6 | 179 | 1.30e-67 | 209 |
| MS.gene072509.t1 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 1.47e-63 | 199 |
Find 89 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTAGGCTTTGACTCTTTC+AGG | 0.145162 | 7.3:+3971738 | None:intergenic |
| CTACTATATCTGCAGATTTC+AGG | 0.187669 | 7.3:-3971637 | MS.gene072509:intron |
| CATGATTGGGGTGCCTTAAT+TGG | 0.213822 | 7.3:-3971783 | MS.gene072509:CDS |
| CCAGTAGTCTTGTTCCTTCA+TGG | 0.244564 | 7.3:-3972008 | MS.gene072509:CDS |
| TCTTTCTTGTTGCTCATGAT+TGG | 0.261993 | 7.3:-3971797 | MS.gene072509:CDS |
| GAGGAAGTGATTGTACAAAA+AGG | 0.277197 | 7.3:-3971002 | MS.gene072509:CDS |
| GTCATAGGAACCAGGTAAAA+TGG | 0.282976 | 7.3:-3971493 | MS.gene072509:intron |
| CTTTCTTGTTGCTCATGATT+GGG | 0.285427 | 7.3:-3971796 | MS.gene072509:CDS |
| AAAATGCATCTTGCAGAAAA+AGG | 0.286834 | 7.3:-3972041 | MS.gene072509:CDS |
| AGCCAAGAGGGCAAGGTGTC+AGG | 0.303963 | 7.3:+3971351 | None:intergenic |
| CCCCTGACACCTTGCCCTCT+TGG | 0.306808 | 7.3:-3971353 | MS.gene072509:CDS |
| CGCCATGAGTACCAGAGTTC+GGG | 0.318900 | 7.3:+3971981 | None:intergenic |
| ACAAAGATACCAACCAATTA+AGG | 0.323697 | 7.3:+3971770 | None:intergenic |
| GTCTCTAAATTTGACAAAAC+AGG | 0.325042 | 7.3:-3971303 | MS.gene072509:CDS |
| ATCCTCACAACACGGAAAAT+TGG | 0.340437 | 7.3:-3971426 | MS.gene072509:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.344243 | 7.3:+3971360 | None:intergenic |
| TACGTAGAAACCCAAATAAA+AGG | 0.378449 | 7.3:-3971695 | MS.gene072509:CDS |
| GCTCCCGATCTCCGTGGCTT+TGG | 0.388680 | 7.3:-3971915 | MS.gene072509:CDS |
| GTGCCAGTGAAATTCATTAC+AGG | 0.390811 | 7.3:-3971107 | MS.gene072509:CDS |
| TTTGACAAAACAGGCTTCAC+TGG | 0.391236 | 7.3:-3971294 | MS.gene072509:CDS |
| AGGGCACCGATTAGAACTTC+AGG | 0.393206 | 7.3:+3970916 | None:intergenic |
| ACAATCACTTCCTCTAAATT+CGG | 0.394533 | 7.3:+3971011 | None:intergenic |
| CTTCTTTGTTTGCAGACTCT+GGG | 0.399025 | 7.3:-3971165 | MS.gene072509:intron |
| TACACAATCTTCCACTTAGT+TGG | 0.410078 | 7.3:-3971861 | MS.gene072509:CDS |
| GCGCCATGAGTACCAGAGTT+CGG | 0.415510 | 7.3:+3971980 | None:intergenic |
| CTGCTTCTTGATTATTAAAG+TGG | 0.416796 | 7.3:+3970973 | None:intergenic |
| GAATCCAGTTCCGTACTTGC+CGG | 0.427409 | 7.3:+3971386 | None:intergenic |
| GTCTCCAAAGCCACGGAGAT+CGG | 0.447397 | 7.3:+3971911 | None:intergenic |
| CATTACAGGTGAGCTAGATA+TGG | 0.453391 | 7.3:-3971093 | MS.gene072509:CDS |
| TCTCCAAAGCCACGGAGATC+GGG | 0.455811 | 7.3:+3971912 | None:intergenic |
| GGAAGATGTGCCGAATTTAG+AGG | 0.457691 | 7.3:-3971021 | MS.gene072509:CDS |
| GGGAACTGAGGGCCACAATC+TGG | 0.459581 | 7.3:+3971955 | None:intergenic |
| TACTTGCCGGTGGGAAGTAT+TGG | 0.475789 | 7.3:+3971399 | None:intergenic |
| CCCACCGGCAAGTACGGAAC+TGG | 0.478584 | 7.3:-3971390 | MS.gene072509:CDS |
| GCCAAGAGGGCAAGGTGTCA+GGG | 0.488708 | 7.3:+3971352 | None:intergenic |
| GATCACTTGCGTGATGTGTA+TGG | 0.490923 | 7.3:-3971666 | MS.gene072509:CDS |
| TTCATGGCTTCCCCGAACTC+TGG | 0.493938 | 7.3:-3971992 | MS.gene072509:CDS |
| GCAAGGTGTCAGGGGTATCC+GGG | 0.499424 | 7.3:+3971361 | None:intergenic |
| TTTCTTGTTGCTCATGATTG+GGG | 0.508757 | 7.3:-3971795 | MS.gene072509:CDS |
| ATTTGGGTTTCTACGTAGGA+AGG | 0.512776 | 7.3:+3971701 | None:intergenic |
| TCCCCGAACTCTGGTACTCA+TGG | 0.513767 | 7.3:-3971983 | MS.gene072509:CDS |
| TATACATGGAGGAGGAATGA+AGG | 0.514026 | 7.3:-3971042 | MS.gene072509:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.3:-3972068 | MS.gene072509:CDS |
| GCCACGGAGATCGGGAGCTA+CGG | 0.522060 | 7.3:+3971920 | None:intergenic |
| ATTGGGGTGCCTTAATTGGT+TGG | 0.526960 | 7.3:-3971779 | MS.gene072509:CDS |
| ATACTTCCCACCGGCAAGTA+CGG | 0.526961 | 7.3:-3971396 | MS.gene072509:CDS |
| TTCTGTAAGCCAAGAGGGCA+AGG | 0.536914 | 7.3:+3971344 | None:intergenic |
| CTCATGGCGCCACCAGATTG+TGG | 0.538156 | 7.3:-3971967 | MS.gene072509:CDS |
| CAACGATATCACCAACTAAG+TGG | 0.540284 | 7.3:+3971850 | None:intergenic |
| GAGCTACGGCGTGGTAGCCG+AGG | 0.552775 | 7.3:+3971934 | None:intergenic |
| TTGCCGGTGGGAAGTATTGG+AGG | 0.553767 | 7.3:+3971402 | None:intergenic |
| GTGTAGTTGCTTATTGAAGT+GGG | 0.557721 | 7.3:+3971879 | None:intergenic |
| TCACCTGTAATGAATTTCAC+TGG | 0.565006 | 7.3:+3971104 | None:intergenic |
| AGAGTTCGGGGAAGCCATGA+AGG | 0.565421 | 7.3:+3971994 | None:intergenic |
| TCTGGGAGCTCACAACTCCA+TGG | 0.565482 | 7.3:-3971148 | MS.gene072509:CDS |
| TCCAGTTCCGTACTTGCCGG+TGG | 0.566439 | 7.3:+3971389 | None:intergenic |
| CCATGAAGGAACAAGACTAC+TGG | 0.567142 | 7.3:+3972008 | None:intergenic |
| TGATCCATGTCATAGGAACC+AGG | 0.570861 | 7.3:-3971501 | MS.gene072509:intron |
| TTTGGGTTTCTACGTAGGAA+GGG | 0.576884 | 7.3:+3971702 | None:intergenic |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.589343 | 7.3:+3971339 | None:intergenic |
| GAAGCTGAGATTGCTGAAGT+TGG | 0.590696 | 7.3:-3971471 | MS.gene072509:CDS |
| GGCATGAAGGAGTATATACA+TGG | 0.590893 | 7.3:-3971056 | MS.gene072509:CDS |
| TGTGTAGTTGCTTATTGAAG+TGG | 0.591667 | 7.3:+3971878 | None:intergenic |
| GAGCTCACAACTCCATGGAC+CGG | 0.592214 | 7.3:-3971143 | MS.gene072509:CDS |
| AAGGAGTATATACATGGAGG+AGG | 0.594079 | 7.3:-3971050 | MS.gene072509:CDS |
| GACAAAACAGGCTTCACTGG+AGG | 0.595419 | 7.3:-3971291 | MS.gene072509:CDS |
| AGCTACGGCGTGGTAGCCGA+GGG | 0.595559 | 7.3:+3971935 | None:intergenic |
| GATATGGTGTACACTTCGCT+AGG | 0.598016 | 7.3:-3971077 | MS.gene072509:CDS |
| ATTTAGAGACAAAGTAAGCA+AGG | 0.606314 | 7.3:+3971316 | None:intergenic |
| CGTGGTAGCCGAGGGAACTG+AGG | 0.611603 | 7.3:+3971943 | None:intergenic |
| GTGGTAGCCGAGGGAACTGA+GGG | 0.612520 | 7.3:+3971944 | None:intergenic |
| ATTGTGGCCCTCAGTTCCCT+CGG | 0.614475 | 7.3:-3971951 | MS.gene072509:CDS |
| AACTGAGGGCCACAATCTGG+TGG | 0.616466 | 7.3:+3971958 | None:intergenic |
| CCAGTTCCGTACTTGCCGGT+GGG | 0.621230 | 7.3:+3971390 | None:intergenic |
| GTACACTTCGCTAGGCATGA+AGG | 0.627184 | 7.3:-3971069 | MS.gene072509:CDS |
| CCAAGAGGGCAAGGTGTCAG+GGG | 0.630193 | 7.3:+3971353 | None:intergenic |
| CATCACTGTCTCCAAAGCCA+CGG | 0.638680 | 7.3:+3971904 | None:intergenic |
| ATGGACCGGAGTGAAAACCT+TGG | 0.641351 | 7.3:-3971129 | MS.gene072509:CDS |
| GGTCCTCCAATACTTCCCAC+CGG | 0.646331 | 7.3:-3971405 | MS.gene072509:CDS |
| GTTGCTCTCATAGACTCACT+TGG | 0.649822 | 7.3:-3971831 | MS.gene072509:CDS |
| AATGAATTTCACTGGCACCA+AGG | 0.651882 | 7.3:+3971112 | None:intergenic |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.3:+3971338 | None:intergenic |
| GGAGATCGGGAGCTACGGCG+TGG | 0.695350 | 7.3:+3971925 | None:intergenic |
| GCCATGAGTACCAGAGTTCG+GGG | 0.700987 | 7.3:+3971982 | None:intergenic |
| GTACGGAACTGGATTCAACC+CGG | 0.702183 | 7.3:-3971379 | MS.gene072509:CDS |
| AGGCATAGAACACAGAACAG+TGG | 0.709768 | 7.3:-3972078 | MS.gene072509:CDS |
| GCCGTAGCTCCCGATCTCCG+TGG | 0.712868 | 7.3:-3971921 | MS.gene072509:CDS |
| GGGACTACTAAGACAAACGT+AGG | 0.722492 | 7.3:+3971722 | None:intergenic |
| ATGAAGGAGTATATACATGG+AGG | 0.728089 | 7.3:-3971053 | MS.gene072509:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTTAATGAATGAT+TGG | - | chr7.3:3971467-3971486 | MS.gene072509:CDS | 15.0% |
| !!! | GATAATCAAATTTTCATTTA+GGG | - | chr7.3:3971796-3971815 | MS.gene072509:CDS | 15.0% |
| !!! | GGATAATCAAATTTTCATTT+AGG | - | chr7.3:3971795-3971814 | MS.gene072509:CDS | 20.0% |
| !!! | TTTGAAATATGATCATATAG+AGG | + | chr7.3:3971414-3971433 | None:intergenic | 20.0% |
| ! | ATGAAAATTTGATTATCCCA+AGG | + | chr7.3:3971793-3971812 | None:intergenic | 25.0% |
| !! | TGATCTATGATCCTTTTATT+TGG | + | chr7.3:3971328-3971347 | None:intergenic | 25.0% |
| !!! | GATCTATGATCCTTTTATTT+GGG | + | chr7.3:3971327-3971346 | None:intergenic | 25.0% |
| AAAATGCATCTTGCAGAAAA+AGG | - | chr7.3:3970968-3970987 | MS.gene072509:CDS | 30.0% | |
| AAATATGATCATATAGAGGC+TGG | + | chr7.3:3971410-3971429 | None:intergenic | 30.0% | |
| ACAAAGATACCAACCAATTA+AGG | + | chr7.3:3971242-3971261 | None:intergenic | 30.0% | |
| ACAATCACTTCCTCTAAATT+CGG | + | chr7.3:3972001-3972020 | None:intergenic | 30.0% | |
| ATTTAGAGACAAAGTAAGCA+AGG | + | chr7.3:3971696-3971715 | None:intergenic | 30.0% | |
| CTGCTTCTTGATTATTAAAG+TGG | + | chr7.3:3972039-3972058 | None:intergenic | 30.0% | |
| GTCTCTAAATTTGACAAAAC+AGG | - | chr7.3:3971706-3971725 | MS.gene072509:CDS | 30.0% | |
| TACGTAGAAACCCAAATAAA+AGG | - | chr7.3:3971314-3971333 | MS.gene072509:CDS | 30.0% | |
| TGAAAAATATCCTCACAACA+CGG | - | chr7.3:3971575-3971594 | MS.gene072509:intron | 30.0% | |
| !! | GATATTTTTCAGCACATAAG+CGG | + | chr7.3:3971566-3971585 | None:intergenic | 30.0% |
| !! | TTTTATTTGGGTTTCTACGT+AGG | + | chr7.3:3971315-3971334 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGATCCATGTCAT+AGG | - | chr7.3:3971501-3971520 | MS.gene072509:intron | 30.0% |
| AGTGATTGTACAAAAAGGAG+TGG | - | chr7.3:3972012-3972031 | MS.gene072509:CDS | 35.0% | |
| CTACTATATCTGCAGATTTC+AGG | - | chr7.3:3971372-3971391 | MS.gene072509:CDS | 35.0% | |
| CTTGCAGAAAAAGGAAAAGA+GGG | - | chr7.3:3970977-3970996 | MS.gene072509:CDS | 35.0% | |
| CTTTCTTGTTGCTCATGATT+GGG | - | chr7.3:3971213-3971232 | MS.gene072509:intron | 35.0% | |
| GAGGAAGTGATTGTACAAAA+AGG | - | chr7.3:3972007-3972026 | MS.gene072509:CDS | 35.0% | |
| GTGATTGTACAAAAAGGAGT+GGG | - | chr7.3:3972013-3972032 | MS.gene072509:CDS | 35.0% | |
| GTGTAGTTGCTTATTGAAGT+GGG | + | chr7.3:3971133-3971152 | None:intergenic | 35.0% | |
| TACACAATCTTCCACTTAGT+TGG | - | chr7.3:3971148-3971167 | MS.gene072509:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+TGG | + | chr7.3:3971908-3971927 | None:intergenic | 35.0% | |
| TCTTGCAGAAAAAGGAAAAG+AGG | - | chr7.3:3970976-3970995 | MS.gene072509:CDS | 35.0% | |
| TCTTTCTTGTTGCTCATGAT+TGG | - | chr7.3:3971212-3971231 | MS.gene072509:intron | 35.0% | |
| TGTGTAGTTGCTTATTGAAG+TGG | + | chr7.3:3971134-3971153 | None:intergenic | 35.0% | |
| TTTCTTGTTGCTCATGATTG+GGG | - | chr7.3:3971214-3971233 | MS.gene072509:intron | 35.0% | |
| ! | ATGAAGGAGTATATACATGG+AGG | - | chr7.3:3971956-3971975 | MS.gene072509:CDS | 35.0% |
| AATGAATTTCACTGGCACCA+AGG | + | chr7.3:3971900-3971919 | None:intergenic | 40.0% | |
| ACAAACAATCAGAGAGCTAC+AGG | + | chr7.3:3971768-3971787 | None:intergenic | 40.0% | |
| ATCCTCACAACACGGAAAAT+TGG | - | chr7.3:3971583-3971602 | MS.gene072509:intron | 40.0% | |
| CAACGATATCACCAACTAAG+TGG | + | chr7.3:3971162-3971181 | None:intergenic | 40.0% | |
| CATTACAGGTGAGCTAGATA+TGG | - | chr7.3:3971916-3971935 | MS.gene072509:CDS | 40.0% | |
| CTCTGATTGTTTGTCTCCTT+GGG | - | chr7.3:3971774-3971793 | MS.gene072509:CDS | 40.0% | |
| GTCATAGGAACCAGGTAAAA+TGG | - | chr7.3:3971516-3971535 | MS.gene072509:intron | 40.0% | |
| GTGCCAGTGAAATTCATTAC+AGG | - | chr7.3:3971902-3971921 | MS.gene072509:CDS | 40.0% | |
| TATACATGGAGGAGGAATGA+AGG | - | chr7.3:3971967-3971986 | MS.gene072509:CDS | 40.0% | |
| TCTCTGATTGTTTGTCTCCT+TGG | - | chr7.3:3971773-3971792 | MS.gene072509:CDS | 40.0% | |
| TTTACCTGGTTCCTATGACA+TGG | + | chr7.3:3971515-3971534 | None:intergenic | 40.0% | |
| TTTGACAAAACAGGCTTCAC+TGG | - | chr7.3:3971715-3971734 | MS.gene072509:CDS | 40.0% | |
| ! | AAGGAGTATATACATGGAGG+AGG | - | chr7.3:3971959-3971978 | MS.gene072509:CDS | 40.0% |
| ! | ATCTCAGCTTCCATTTTACC+TGG | + | chr7.3:3971529-3971548 | None:intergenic | 40.0% |
| ! | ATTTGGGTTTCTACGTAGGA+AGG | + | chr7.3:3971311-3971330 | None:intergenic | 40.0% |
| ! | CTTCTTTGTTTGCAGACTCT+GGG | - | chr7.3:3971844-3971863 | MS.gene072509:CDS | 40.0% |
| ! | GGCATGAAGGAGTATATACA+TGG | - | chr7.3:3971953-3971972 | MS.gene072509:CDS | 40.0% |
| ! | TTTGGGTTTCTACGTAGGAA+GGG | + | chr7.3:3971310-3971329 | None:intergenic | 40.0% |
| AGGCATAGAACACAGAACAG+TGG | - | chr7.3:3970931-3970950 | MS.gene072509:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.3:3970941-3970960 | MS.gene072509:CDS | 45.0% | |
| CCATGAAGGAACAAGACTAC+TGG | + | chr7.3:3971004-3971023 | None:intergenic | 45.0% | |
| GAAGCTGAGATTGCTGAAGT+TGG | - | chr7.3:3971538-3971557 | MS.gene072509:intron | 45.0% | |
| GATATGGTGTACACTTCGCT+AGG | - | chr7.3:3971932-3971951 | MS.gene072509:CDS | 45.0% | |
| GATCACTTGCGTGATGTGTA+TGG | - | chr7.3:3971343-3971362 | MS.gene072509:CDS | 45.0% | |
| GGAAGATGTGCCGAATTTAG+AGG | - | chr7.3:3971988-3972007 | MS.gene072509:CDS | 45.0% | |
| GGGACTACTAAGACAAACGT+AGG | + | chr7.3:3971290-3971309 | None:intergenic | 45.0% | |
| GTTGCTCTCATAGACTCACT+TGG | - | chr7.3:3971178-3971197 | MS.gene072509:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | + | chr7.3:3971673-3971692 | None:intergenic | 45.0% | |
| TGATCCATGTCATAGGAACC+AGG | - | chr7.3:3971508-3971527 | MS.gene072509:intron | 45.0% | |
| ! | ACGTAGGCTTTGACTCTTTC+AGG | + | chr7.3:3971274-3971293 | None:intergenic | 45.0% |
| ! | ATTGGGGTGCCTTAATTGGT+TGG | - | chr7.3:3971230-3971249 | MS.gene072509:intron | 45.0% |
| ! | CATGATTGGGGTGCCTTAAT+TGG | - | chr7.3:3971226-3971245 | MS.gene072509:intron | 45.0% |
| ! | GACCAATTTTCCGTGTTGTG+AGG | + | chr7.3:3971588-3971607 | None:intergenic | 45.0% |
| ! | GCTTCTTTGTTTGCAGACTC+TGG | - | chr7.3:3971843-3971862 | MS.gene072509:CDS | 45.0% |
| !! | CCAGTAGTCTTGTTCCTTCA+TGG | - | chr7.3:3971001-3971020 | MS.gene072509:CDS | 45.0% |
| ATACTTCCCACCGGCAAGTA+CGG | - | chr7.3:3971613-3971632 | MS.gene072509:intron | 50.0% | |
| ATGGACCGGAGTGAAAACCT+TGG | - | chr7.3:3971880-3971899 | MS.gene072509:CDS | 50.0% | |
| CATCACTGTCTCCAAAGCCA+CGG | + | chr7.3:3971108-3971127 | None:intergenic | 50.0% | |
| GAATCCAGTTCCGTACTTGC+CGG | + | chr7.3:3971626-3971645 | None:intergenic | 50.0% | |
| GACAAAACAGGCTTCACTGG+AGG | - | chr7.3:3971718-3971737 | MS.gene072509:CDS | 50.0% | |
| GTACACTTCGCTAGGCATGA+AGG | - | chr7.3:3971940-3971959 | MS.gene072509:CDS | 50.0% | |
| GTACGGAACTGGATTCAACC+CGG | - | chr7.3:3971630-3971649 | MS.gene072509:intron | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | + | chr7.3:3971674-3971693 | None:intergenic | 50.0% | |
| TTCTGTAAGCCAAGAGGGCA+AGG | + | chr7.3:3971668-3971687 | None:intergenic | 50.0% | |
| ! | AAGGTTTTCACTCCGGTCCA+TGG | + | chr7.3:3971881-3971900 | None:intergenic | 50.0% |
| ! | TACTTGCCGGTGGGAAGTAT+TGG | + | chr7.3:3971613-3971632 | None:intergenic | 50.0% |
| ! | TGGCACCAAGGTTTTCACTC+CGG | + | chr7.3:3971888-3971907 | None:intergenic | 50.0% |
| AACTGAGGGCCACAATCTGG+TGG | + | chr7.3:3971054-3971073 | None:intergenic | 55.0% | |
| AGAGTTCGGGGAAGCCATGA+AGG | + | chr7.3:3971018-3971037 | None:intergenic | 55.0% | |
| ATTGTGGCCCTCAGTTCCCT+CGG | - | chr7.3:3971058-3971077 | MS.gene072509:CDS | 55.0% | |
| CGCCATGAGTACCAGAGTTC+GGG | + | chr7.3:3971031-3971050 | None:intergenic | 55.0% | |
| GAGCTCACAACTCCATGGAC+CGG | - | chr7.3:3971866-3971885 | MS.gene072509:CDS | 55.0% | |
| GCCATGAGTACCAGAGTTCG+GGG | + | chr7.3:3971030-3971049 | None:intergenic | 55.0% | |
| GCGCCATGAGTACCAGAGTT+CGG | + | chr7.3:3971032-3971051 | None:intergenic | 55.0% | |
| GGTCCTCCAATACTTCCCAC+CGG | - | chr7.3:3971604-3971623 | MS.gene072509:intron | 55.0% | |
| GTCTCCAAAGCCACGGAGAT+CGG | + | chr7.3:3971101-3971120 | None:intergenic | 55.0% | |
| TCCCCGAACTCTGGTACTCA+TGG | - | chr7.3:3971026-3971045 | MS.gene072509:CDS | 55.0% | |
| TCTCCAAAGCCACGGAGATC+GGG | + | chr7.3:3971100-3971119 | None:intergenic | 55.0% | |
| TCTGGGAGCTCACAACTCCA+TGG | - | chr7.3:3971861-3971880 | MS.gene072509:CDS | 55.0% | |
| TTCATGGCTTCCCCGAACTC+TGG | - | chr7.3:3971017-3971036 | MS.gene072509:CDS | 55.0% | |
| !! | TTGCCGGTGGGAAGTATTGG+AGG | + | chr7.3:3971610-3971629 | None:intergenic | 55.0% |
| CCAGTTCCGTACTTGCCGGT+GGG | + | chr7.3:3971622-3971641 | None:intergenic | 60.0% | |
| CTCATGGCGCCACCAGATTG+TGG | - | chr7.3:3971042-3971061 | MS.gene072509:CDS | 60.0% | |
| GGGAACTGAGGGCCACAATC+TGG | + | chr7.3:3971057-3971076 | None:intergenic | 60.0% | |
| GTGGTAGCCGAGGGAACTGA+GGG | + | chr7.3:3971068-3971087 | None:intergenic | 60.0% | |
| TCCAGTTCCGTACTTGCCGG+TGG | + | chr7.3:3971623-3971642 | None:intergenic | 60.0% | |
| ! | AGCCAAGAGGGCAAGGTGTC+AGG | + | chr7.3:3971661-3971680 | None:intergenic | 60.0% |
| ! | CCAAGAGGGCAAGGTGTCAG+GGG | + | chr7.3:3971659-3971678 | None:intergenic | 60.0% |
| ! | GCCAAGAGGGCAAGGTGTCA+GGG | + | chr7.3:3971660-3971679 | None:intergenic | 60.0% |
| !! | GCAAGGTGTCAGGGGTATCC+GGG | + | chr7.3:3971651-3971670 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | + | chr7.3:3971652-3971671 | None:intergenic | 60.0% |
| AGCTACGGCGTGGTAGCCGA+GGG | + | chr7.3:3971077-3971096 | None:intergenic | 65.0% | |
| CCCACCGGCAAGTACGGAAC+TGG | - | chr7.3:3971619-3971638 | MS.gene072509:intron | 65.0% | |
| CCCCTGACACCTTGCCCTCT+TGG | - | chr7.3:3971656-3971675 | MS.gene072509:CDS | 65.0% | |
| CGTGGTAGCCGAGGGAACTG+AGG | + | chr7.3:3971069-3971088 | None:intergenic | 65.0% | |
| GCCACGGAGATCGGGAGCTA+CGG | + | chr7.3:3971092-3971111 | None:intergenic | 65.0% | |
| GCTCCCGATCTCCGTGGCTT+TGG | - | chr7.3:3971094-3971113 | MS.gene072509:CDS | 65.0% | |
| GAGCTACGGCGTGGTAGCCG+AGG | + | chr7.3:3971078-3971097 | None:intergenic | 70.0% | |
| GCCGTAGCTCCCGATCTCCG+TGG | - | chr7.3:3971088-3971107 | MS.gene072509:CDS | 70.0% | |
| GGAGATCGGGAGCTACGGCG+TGG | + | chr7.3:3971087-3971106 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3970926 | 3972105 | 3970926 | ID=MS.gene072509 |
| chr7.3 | mRNA | 3970926 | 3972105 | 3970926 | ID=MS.gene072509.t1;Parent=MS.gene072509 |
| chr7.3 | exon | 3971638 | 3972105 | 3971638 | ID=MS.gene072509.t1.exon1;Parent=MS.gene072509.t1 |
| chr7.3 | CDS | 3971638 | 3972105 | 3971638 | ID=cds.MS.gene072509.t1;Parent=MS.gene072509.t1 |
| chr7.3 | exon | 3971264 | 3971508 | 3971264 | ID=MS.gene072509.t1.exon2;Parent=MS.gene072509.t1 |
| chr7.3 | CDS | 3971264 | 3971508 | 3971264 | ID=cds.MS.gene072509.t1;Parent=MS.gene072509.t1 |
| chr7.3 | exon | 3970926 | 3971172 | 3970926 | ID=MS.gene072509.t1.exon3;Parent=MS.gene072509.t1 |
| chr7.3 | CDS | 3970926 | 3971172 | 3970926 | ID=cds.MS.gene072509.t1;Parent=MS.gene072509.t1 |
| Gene Sequence |
| Protein sequence |
