Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050917.t1 | GAU11476.1 | 87.5 | 319 | 39 | 1 | 1 | 319 | 1 | 318 | 7.70E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050917.t1 | I6YGS0 | 36.9 | 317 | 186 | 5 | 7 | 316 | 7 | 316 | 2.7e-52 | 207.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050917.t1 | A2Q320 | 84.6 | 319 | 49 | 0 | 1 | 319 | 1 | 319 | 2.0e-162 | 581.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050917 | MS.gene072509 | 0.926746 | 3.07E-91 | -1.69E-46 |
| MS.gene050917 | MS.gene23127 | 0.899323 | 2.22E-77 | -1.69E-46 |
| MS.gene050917 | MS.gene93736 | 0.853235 | 2.73E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050917 | MS.gene07001 | PPI |
| MS.gene77823 | MS.gene050917 | PPI |
| MS.gene035367 | MS.gene050917 | PPI |
| MS.gene050917 | MS.gene066361 | PPI |
| MS.gene050917 | MS.gene035371 | PPI |
| MS.gene050917 | MS.gene071502 | PPI |
| MS.gene066360 | MS.gene050917 | PPI |
| MS.gene89620 | MS.gene050917 | PPI |
| MS.gene050917 | MS.gene22955 | PPI |
| MS.gene050917 | MS.gene071500 | PPI |
| MS.gene071504 | MS.gene050917 | PPI |
| MS.gene050917 | MS.gene041604 | PPI |
| MS.gene76453 | MS.gene050917 | PPI |
| MS.gene050917 | MS.gene025707 | PPI |
| MS.gene035369 | MS.gene050917 | PPI |
| MS.gene035373 | MS.gene050917 | PPI |
| MS.gene050917 | MS.gene012063 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050917.t1 | MTR_7g113020 | 84.639 | 319 | 49 | 0 | 1 | 319 | 1 | 319 | 0.0 | 568 |
| MS.gene050917.t1 | MTR_7g113050 | 82.759 | 319 | 55 | 0 | 1 | 319 | 1 | 319 | 0.0 | 566 |
| MS.gene050917.t1 | MTR_7g113030 | 82.445 | 319 | 56 | 0 | 1 | 319 | 1 | 319 | 0.0 | 563 |
| MS.gene050917.t1 | MTR_7g112620 | 81.818 | 319 | 58 | 0 | 1 | 319 | 1 | 319 | 0.0 | 559 |
| MS.gene050917.t1 | MTR_7g112615 | 81.191 | 319 | 60 | 0 | 1 | 319 | 1 | 319 | 0.0 | 553 |
| MS.gene050917.t1 | MTR_7g112960 | 72.897 | 321 | 83 | 2 | 1 | 319 | 1 | 319 | 5.42e-179 | 497 |
| MS.gene050917.t1 | MTR_7g112963 | 73.832 | 321 | 80 | 2 | 1 | 319 | 1 | 319 | 2.35e-177 | 493 |
| MS.gene050917.t1 | MTR_4g005160 | 71.207 | 323 | 88 | 3 | 1 | 319 | 1 | 322 | 9.59e-175 | 487 |
| MS.gene050917.t1 | MTR_7g112970 | 71.160 | 319 | 89 | 2 | 1 | 319 | 1 | 316 | 3.24e-174 | 485 |
| MS.gene050917.t1 | MTR_7g113050 | 83.193 | 238 | 40 | 0 | 1 | 238 | 1 | 238 | 4.49e-154 | 431 |
| MS.gene050917.t1 | MTR_7g112615 | 81.933 | 238 | 43 | 0 | 1 | 238 | 1 | 238 | 1.40e-151 | 425 |
| MS.gene050917.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 3.27e-147 | 427 |
| MS.gene050917.t1 | MTR_4g120240 | 61.059 | 321 | 121 | 3 | 1 | 319 | 37 | 355 | 2.46e-142 | 406 |
| MS.gene050917.t1 | MTR_7g108825 | 56.740 | 319 | 136 | 2 | 1 | 319 | 1 | 317 | 3.83e-134 | 384 |
| MS.gene050917.t1 | MTR_7g112910 | 70.281 | 249 | 19 | 5 | 72 | 319 | 1 | 195 | 2.60e-111 | 321 |
| MS.gene050917.t1 | MTR_8g076680 | 46.708 | 319 | 166 | 3 | 1 | 319 | 3 | 317 | 1.57e-103 | 306 |
| MS.gene050917.t1 | MTR_7g108825 | 56.723 | 238 | 101 | 2 | 1 | 238 | 1 | 236 | 7.01e-97 | 286 |
| MS.gene050917.t1 | MTR_7g112615 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 1.43e-95 | 280 |
| MS.gene050917.t1 | MTR_1g083480 | 73.585 | 159 | 38 | 2 | 1 | 156 | 1 | 158 | 1.58e-82 | 247 |
| MS.gene050917.t1 | MTR_8g076680 | 48.319 | 238 | 121 | 2 | 1 | 238 | 3 | 238 | 1.94e-82 | 249 |
| MS.gene050917.t1 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 1.45e-66 | 211 |
| MS.gene050917.t1 | MTR_2g090245 | 36.760 | 321 | 189 | 7 | 1 | 318 | 1 | 310 | 4.84e-64 | 205 |
| MS.gene050917.t1 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 8.86e-62 | 199 |
| MS.gene050917.t1 | MTR_4g089040 | 34.579 | 321 | 195 | 6 | 1 | 318 | 1 | 309 | 2.65e-59 | 192 |
| MS.gene050917.t1 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 7.64e-57 | 187 |
| MS.gene050917.t1 | MTR_3g024250 | 72.897 | 107 | 29 | 0 | 46 | 152 | 1 | 107 | 2.34e-53 | 171 |
| MS.gene050917.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 2.78e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050917.t1 | AT3G05600 | 61.111 | 324 | 121 | 4 | 1 | 319 | 1 | 324 | 5.00e-149 | 422 |
| MS.gene050917.t1 | AT4G02340 | 56.386 | 321 | 133 | 4 | 1 | 319 | 1 | 316 | 3.19e-134 | 384 |
| MS.gene050917.t1 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 1.32e-125 | 364 |
| MS.gene050917.t1 | AT2G26740 | 59.317 | 322 | 124 | 4 | 4 | 319 | 1 | 321 | 8.06e-125 | 360 |
| MS.gene050917.t1 | AT2G26750 | 57.632 | 321 | 130 | 4 | 4 | 319 | 1 | 320 | 1.27e-119 | 347 |
| MS.gene050917.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 3.78e-109 | 317 |
| MS.gene050917.t1 | AT4G15955 | 51.077 | 325 | 123 | 5 | 5 | 319 | 6 | 304 | 7.26e-106 | 311 |
| MS.gene050917.t1 | AT3G51000 | 44.954 | 327 | 159 | 6 | 3 | 319 | 4 | 319 | 1.28e-97 | 291 |
| MS.gene050917.t1 | AT4G15955 | 57.471 | 174 | 64 | 2 | 5 | 168 | 6 | 179 | 1.30e-67 | 209 |
| MS.gene050917.t1 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 1.47e-63 | 199 |
Find 89 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGACTCTTTC+AGG | 0.142456 | 7.1:+3439504 | None:intergenic |
| CTACTATATCTGCAGATTTC+AGG | 0.187669 | 7.1:-3439403 | MS.gene050917:intron |
| CATGATTGGGGTGCCTTAAT+TGG | 0.213822 | 7.1:-3439549 | MS.gene050917:CDS |
| CCAGTAGTCTTGTTCCTTCA+TGG | 0.244564 | 7.1:-3439774 | MS.gene050917:CDS |
| TCTTTCTTGTTGCTCATGAT+TGG | 0.261993 | 7.1:-3439563 | MS.gene050917:CDS |
| GAGGAAGTGATTGTACAAAA+AGG | 0.277197 | 7.1:-3438768 | MS.gene050917:CDS |
| GTCATAGGAACCAGGTAAAA+TGG | 0.282976 | 7.1:-3439259 | MS.gene050917:intron |
| CTTTCTTGTTGCTCATGATT+GGG | 0.285427 | 7.1:-3439562 | MS.gene050917:CDS |
| AAAATGCATCTTGCAGAAAA+AGG | 0.286834 | 7.1:-3439807 | MS.gene050917:CDS |
| AGCCAAGAGGGCAAGGTGTC+AGG | 0.303963 | 7.1:+3439117 | None:intergenic |
| CCCCTGACACCTTGCCCTCT+TGG | 0.306808 | 7.1:-3439119 | MS.gene050917:CDS |
| CGCCATGAGTACCAGAGTTC+GGG | 0.318900 | 7.1:+3439747 | None:intergenic |
| ACAAAGATACCAACCAATTA+AGG | 0.323697 | 7.1:+3439536 | None:intergenic |
| GTCTCTAAATTTGACAAAAC+AGG | 0.325042 | 7.1:-3439069 | MS.gene050917:CDS |
| ATCCTCACAACACGGAAAAT+TGG | 0.340437 | 7.1:-3439192 | MS.gene050917:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.344243 | 7.1:+3439126 | None:intergenic |
| TACGTAGAAACCCAAATAAA+AGG | 0.378449 | 7.1:-3439461 | MS.gene050917:CDS |
| GCTCCCGATCTCCGTGGCTT+TGG | 0.388680 | 7.1:-3439681 | MS.gene050917:CDS |
| GTGCCAGTGAAATTCATTAC+AGG | 0.390811 | 7.1:-3438873 | MS.gene050917:CDS |
| TTTGACAAAACAGGCTTCAC+TGG | 0.391236 | 7.1:-3439060 | MS.gene050917:CDS |
| AGGGCACCGATTAGAACTTC+AGG | 0.393206 | 7.1:+3438682 | None:intergenic |
| ACAATCACTTCCTCTAAATT+CGG | 0.394533 | 7.1:+3438777 | None:intergenic |
| CTTCTTTGTTTGCAGACTCT+GGG | 0.399025 | 7.1:-3438931 | MS.gene050917:intron |
| TACACAATCTTCCACTTAGT+TGG | 0.410078 | 7.1:-3439627 | MS.gene050917:CDS |
| GCGCCATGAGTACCAGAGTT+CGG | 0.415510 | 7.1:+3439746 | None:intergenic |
| CTGCTTCTTGATTATTAAAG+TGG | 0.416796 | 7.1:+3438739 | None:intergenic |
| GAATCCAGTTCCGTACTTGC+CGG | 0.427409 | 7.1:+3439152 | None:intergenic |
| GTCTCCAAAGCCACGGAGAT+CGG | 0.447397 | 7.1:+3439677 | None:intergenic |
| CATTACAGGTGAGCTAGATA+TGG | 0.453391 | 7.1:-3438859 | MS.gene050917:CDS |
| TCTCCAAAGCCACGGAGATC+GGG | 0.455811 | 7.1:+3439678 | None:intergenic |
| GGAAGATGTGCCGAATTTAG+AGG | 0.457691 | 7.1:-3438787 | MS.gene050917:CDS |
| GGGAACTGAGGGCCACAATC+TGG | 0.459581 | 7.1:+3439721 | None:intergenic |
| TACTTGCCGGTGGGAAGTAT+TGG | 0.475789 | 7.1:+3439165 | None:intergenic |
| CCCACCGGCAAGTACGGAAC+TGG | 0.478584 | 7.1:-3439156 | MS.gene050917:CDS |
| GCCAAGAGGGCAAGGTGTCA+GGG | 0.488708 | 7.1:+3439118 | None:intergenic |
| GATCACTTGCGTGATGTGTA+TGG | 0.490923 | 7.1:-3439432 | MS.gene050917:CDS |
| TTCATGGCTTCCCCGAACTC+TGG | 0.493938 | 7.1:-3439758 | MS.gene050917:CDS |
| GCAAGGTGTCAGGGGTATCC+GGG | 0.499424 | 7.1:+3439127 | None:intergenic |
| TTTCTTGTTGCTCATGATTG+GGG | 0.508757 | 7.1:-3439561 | MS.gene050917:CDS |
| ATTTGGGTTTCTACGTAGGA+AGG | 0.512776 | 7.1:+3439467 | None:intergenic |
| TCCCCGAACTCTGGTACTCA+TGG | 0.513767 | 7.1:-3439749 | MS.gene050917:CDS |
| TATACATGGAGGAGGAATGA+AGG | 0.514026 | 7.1:-3438808 | MS.gene050917:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.1:-3439834 | MS.gene050917:CDS |
| GCCACGGAGATCGGGAGCTA+CGG | 0.522060 | 7.1:+3439686 | None:intergenic |
| ATTGGGGTGCCTTAATTGGT+TGG | 0.526960 | 7.1:-3439545 | MS.gene050917:CDS |
| ATACTTCCCACCGGCAAGTA+CGG | 0.526961 | 7.1:-3439162 | MS.gene050917:CDS |
| TTCTGTAAGCCAAGAGGGCA+AGG | 0.536914 | 7.1:+3439110 | None:intergenic |
| CTCATGGCGCCACCAGATTG+TGG | 0.538156 | 7.1:-3439733 | MS.gene050917:CDS |
| CAACGATATCACCAACTAAG+TGG | 0.540284 | 7.1:+3439616 | None:intergenic |
| GAGCTACGGCGTGGTAGCCG+AGG | 0.552775 | 7.1:+3439700 | None:intergenic |
| TTGCCGGTGGGAAGTATTGG+AGG | 0.553767 | 7.1:+3439168 | None:intergenic |
| GTGTAGTTGCTTATTGAAGT+GGG | 0.557721 | 7.1:+3439645 | None:intergenic |
| TCACCTGTAATGAATTTCAC+TGG | 0.565006 | 7.1:+3438870 | None:intergenic |
| AGAGTTCGGGGAAGCCATGA+AGG | 0.565421 | 7.1:+3439760 | None:intergenic |
| TCCAGTTCCGTACTTGCCGG+TGG | 0.566439 | 7.1:+3439155 | None:intergenic |
| CCATGAAGGAACAAGACTAC+TGG | 0.567142 | 7.1:+3439774 | None:intergenic |
| TGATCCATGTCATAGGAACC+AGG | 0.570861 | 7.1:-3439267 | MS.gene050917:intron |
| TTTGGGTTTCTACGTAGGAA+GGG | 0.576884 | 7.1:+3439468 | None:intergenic |
| GGGACTACTAAGACAAACAT+AGG | 0.582812 | 7.1:+3439488 | None:intergenic |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.589343 | 7.1:+3439105 | None:intergenic |
| GAAGCTGAGATTGCTGAAGT+TGG | 0.590696 | 7.1:-3439237 | MS.gene050917:CDS |
| GGCATGAAGGAGTATATACA+TGG | 0.590893 | 7.1:-3438822 | MS.gene050917:CDS |
| TGTGTAGTTGCTTATTGAAG+TGG | 0.591667 | 7.1:+3439644 | None:intergenic |
| AAGGAGTATATACATGGAGG+AGG | 0.594079 | 7.1:-3438816 | MS.gene050917:CDS |
| GACAAAACAGGCTTCACTGG+AGG | 0.595419 | 7.1:-3439057 | MS.gene050917:CDS |
| AGCTACGGCGTGGTAGCCGA+GGG | 0.595559 | 7.1:+3439701 | None:intergenic |
| GATATGGTGTACACTTCGCT+AGG | 0.598016 | 7.1:-3438843 | MS.gene050917:CDS |
| ATTTAGAGACAAAGTAAGCA+AGG | 0.606314 | 7.1:+3439082 | None:intergenic |
| TCTGGGAGCTAACAACTCCA+TGG | 0.608255 | 7.1:-3438914 | MS.gene050917:CDS |
| GAGCTAACAACTCCATGGAC+CGG | 0.608592 | 7.1:-3438909 | MS.gene050917:CDS |
| CGTGGTAGCCGAGGGAACTG+AGG | 0.611603 | 7.1:+3439709 | None:intergenic |
| GTGGTAGCCGAGGGAACTGA+GGG | 0.612520 | 7.1:+3439710 | None:intergenic |
| ATTGTGGCCCTCAGTTCCCT+CGG | 0.614475 | 7.1:-3439717 | MS.gene050917:CDS |
| AACTGAGGGCCACAATCTGG+TGG | 0.616466 | 7.1:+3439724 | None:intergenic |
| CCAGTTCCGTACTTGCCGGT+GGG | 0.621230 | 7.1:+3439156 | None:intergenic |
| GTACACTTCGCTAGGCATGA+AGG | 0.627184 | 7.1:-3438835 | MS.gene050917:CDS |
| CGTCACTGTCTCCAAAGCCA+CGG | 0.629169 | 7.1:+3439670 | None:intergenic |
| CCAAGAGGGCAAGGTGTCAG+GGG | 0.630193 | 7.1:+3439119 | None:intergenic |
| ATGGACCGGAGTGAAAACCT+TGG | 0.641351 | 7.1:-3438895 | MS.gene050917:CDS |
| GGTCCTCCAATACTTCCCAC+CGG | 0.646331 | 7.1:-3439171 | MS.gene050917:CDS |
| GTTGCTCTCATAGACTCACT+TGG | 0.649822 | 7.1:-3439597 | MS.gene050917:CDS |
| AATGAATTTCACTGGCACCA+AGG | 0.651882 | 7.1:+3438878 | None:intergenic |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.1:+3439104 | None:intergenic |
| GGAGATCGGGAGCTACGGCG+TGG | 0.695350 | 7.1:+3439691 | None:intergenic |
| GCCATGAGTACCAGAGTTCG+GGG | 0.700987 | 7.1:+3439748 | None:intergenic |
| GTACGGAACTGGATTCAACC+CGG | 0.702183 | 7.1:-3439145 | MS.gene050917:CDS |
| AGGCATAGAACACAGAACAG+TGG | 0.709768 | 7.1:-3439844 | MS.gene050917:CDS |
| GCCGTAGCTCCCGATCTCCG+TGG | 0.712868 | 7.1:-3439687 | MS.gene050917:CDS |
| ATGAAGGAGTATATACATGG+AGG | 0.728089 | 7.1:-3438819 | MS.gene050917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTTAATGAATGAT+TGG | - | chr7.1:3439233-3439252 | MS.gene050917:CDS | 15.0% |
| !!! | GATAATCAAATTTTCATTTA+GGG | - | chr7.1:3439562-3439581 | MS.gene050917:CDS | 15.0% |
| !!! | GGATAATCAAATTTTCATTT+AGG | - | chr7.1:3439561-3439580 | MS.gene050917:CDS | 20.0% |
| !!! | TTTGAAATATGATCATATAG+AGG | + | chr7.1:3439180-3439199 | None:intergenic | 20.0% |
| ! | ATGAAAATTTGATTATCCCA+AGG | + | chr7.1:3439559-3439578 | None:intergenic | 25.0% |
| !! | TGATCTATGATCCTTTTATT+TGG | + | chr7.1:3439094-3439113 | None:intergenic | 25.0% |
| !!! | GATCTATGATCCTTTTATTT+GGG | + | chr7.1:3439093-3439112 | None:intergenic | 25.0% |
| AAAATGCATCTTGCAGAAAA+AGG | - | chr7.1:3438734-3438753 | MS.gene050917:CDS | 30.0% | |
| AAATATGATCATATAGAGGC+TGG | + | chr7.1:3439176-3439195 | None:intergenic | 30.0% | |
| ACAAAGATACCAACCAATTA+AGG | + | chr7.1:3439008-3439027 | None:intergenic | 30.0% | |
| ACAATCACTTCCTCTAAATT+CGG | + | chr7.1:3439767-3439786 | None:intergenic | 30.0% | |
| ATTTAGAGACAAAGTAAGCA+AGG | + | chr7.1:3439462-3439481 | None:intergenic | 30.0% | |
| CTGCTTCTTGATTATTAAAG+TGG | + | chr7.1:3439805-3439824 | None:intergenic | 30.0% | |
| GTCTCTAAATTTGACAAAAC+AGG | - | chr7.1:3439472-3439491 | MS.gene050917:CDS | 30.0% | |
| TACGTAGAAACCCAAATAAA+AGG | - | chr7.1:3439080-3439099 | MS.gene050917:CDS | 30.0% | |
| TGAAAAATATCCTCACAACA+CGG | - | chr7.1:3439341-3439360 | MS.gene050917:intron | 30.0% | |
| !! | GATATTTTTCAGCACATAAG+CGG | + | chr7.1:3439332-3439351 | None:intergenic | 30.0% |
| !! | TTTTATTTGGGTTTCTACGT+AGG | + | chr7.1:3439081-3439100 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGATCCATGTCAT+AGG | - | chr7.1:3439267-3439286 | MS.gene050917:intron | 30.0% |
| AGTGATTGTACAAAAAGGAG+TGG | - | chr7.1:3439778-3439797 | MS.gene050917:CDS | 35.0% | |
| CTACTATATCTGCAGATTTC+AGG | - | chr7.1:3439138-3439157 | MS.gene050917:CDS | 35.0% | |
| CTTGCAGAAAAAGGAAAAGA+GGG | - | chr7.1:3438743-3438762 | MS.gene050917:CDS | 35.0% | |
| CTTTCTTGTTGCTCATGATT+GGG | - | chr7.1:3438979-3438998 | MS.gene050917:intron | 35.0% | |
| GAGGAAGTGATTGTACAAAA+AGG | - | chr7.1:3439773-3439792 | MS.gene050917:CDS | 35.0% | |
| GTGATTGTACAAAAAGGAGT+GGG | - | chr7.1:3439779-3439798 | MS.gene050917:CDS | 35.0% | |
| GTGTAGTTGCTTATTGAAGT+GGG | + | chr7.1:3438899-3438918 | None:intergenic | 35.0% | |
| TACACAATCTTCCACTTAGT+TGG | - | chr7.1:3438914-3438933 | MS.gene050917:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+TGG | + | chr7.1:3439674-3439693 | None:intergenic | 35.0% | |
| TCTTGCAGAAAAAGGAAAAG+AGG | - | chr7.1:3438742-3438761 | MS.gene050917:CDS | 35.0% | |
| TCTTTCTTGTTGCTCATGAT+TGG | - | chr7.1:3438978-3438997 | MS.gene050917:intron | 35.0% | |
| TGTGTAGTTGCTTATTGAAG+TGG | + | chr7.1:3438900-3438919 | None:intergenic | 35.0% | |
| TTTCTTGTTGCTCATGATTG+GGG | - | chr7.1:3438980-3438999 | MS.gene050917:intron | 35.0% | |
| ! | ATGAAGGAGTATATACATGG+AGG | - | chr7.1:3439722-3439741 | MS.gene050917:CDS | 35.0% |
| AATGAATTTCACTGGCACCA+AGG | + | chr7.1:3439666-3439685 | None:intergenic | 40.0% | |
| ACAAACAATCAGAGAGCTAC+AGG | + | chr7.1:3439534-3439553 | None:intergenic | 40.0% | |
| ATCCTCACAACACGGAAAAT+TGG | - | chr7.1:3439349-3439368 | MS.gene050917:intron | 40.0% | |
| CAACGATATCACCAACTAAG+TGG | + | chr7.1:3438928-3438947 | None:intergenic | 40.0% | |
| CATTACAGGTGAGCTAGATA+TGG | - | chr7.1:3439682-3439701 | MS.gene050917:CDS | 40.0% | |
| CTCTGATTGTTTGTCTCCTT+GGG | - | chr7.1:3439540-3439559 | MS.gene050917:CDS | 40.0% | |
| GGGACTACTAAGACAAACAT+AGG | + | chr7.1:3439056-3439075 | None:intergenic | 40.0% | |
| GTCATAGGAACCAGGTAAAA+TGG | - | chr7.1:3439282-3439301 | MS.gene050917:intron | 40.0% | |
| GTGCCAGTGAAATTCATTAC+AGG | - | chr7.1:3439668-3439687 | MS.gene050917:CDS | 40.0% | |
| TATACATGGAGGAGGAATGA+AGG | - | chr7.1:3439733-3439752 | MS.gene050917:CDS | 40.0% | |
| TCTCTGATTGTTTGTCTCCT+TGG | - | chr7.1:3439539-3439558 | MS.gene050917:CDS | 40.0% | |
| TTTACCTGGTTCCTATGACA+TGG | + | chr7.1:3439281-3439300 | None:intergenic | 40.0% | |
| TTTGACAAAACAGGCTTCAC+TGG | - | chr7.1:3439481-3439500 | MS.gene050917:CDS | 40.0% | |
| ! | AAGGAGTATATACATGGAGG+AGG | - | chr7.1:3439725-3439744 | MS.gene050917:CDS | 40.0% |
| ! | ACATAGGCTTTGACTCTTTC+AGG | + | chr7.1:3439040-3439059 | None:intergenic | 40.0% |
| ! | ATCTCAGCTTCCATTTTACC+TGG | + | chr7.1:3439295-3439314 | None:intergenic | 40.0% |
| ! | ATTTGGGTTTCTACGTAGGA+AGG | + | chr7.1:3439077-3439096 | None:intergenic | 40.0% |
| ! | CTTCTTTGTTTGCAGACTCT+GGG | - | chr7.1:3439610-3439629 | MS.gene050917:CDS | 40.0% |
| ! | GGCATGAAGGAGTATATACA+TGG | - | chr7.1:3439719-3439738 | MS.gene050917:CDS | 40.0% |
| ! | TTTGGGTTTCTACGTAGGAA+GGG | + | chr7.1:3439076-3439095 | None:intergenic | 40.0% |
| AGGCATAGAACACAGAACAG+TGG | - | chr7.1:3438697-3438716 | MS.gene050917:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.1:3438707-3438726 | MS.gene050917:CDS | 45.0% | |
| CCATGAAGGAACAAGACTAC+TGG | + | chr7.1:3438770-3438789 | None:intergenic | 45.0% | |
| GAAGCTGAGATTGCTGAAGT+TGG | - | chr7.1:3439304-3439323 | MS.gene050917:intron | 45.0% | |
| GATATGGTGTACACTTCGCT+AGG | - | chr7.1:3439698-3439717 | MS.gene050917:CDS | 45.0% | |
| GATCACTTGCGTGATGTGTA+TGG | - | chr7.1:3439109-3439128 | MS.gene050917:CDS | 45.0% | |
| GGAAGATGTGCCGAATTTAG+AGG | - | chr7.1:3439754-3439773 | MS.gene050917:CDS | 45.0% | |
| GTTGCTCTCATAGACTCACT+TGG | - | chr7.1:3438944-3438963 | MS.gene050917:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | + | chr7.1:3439439-3439458 | None:intergenic | 45.0% | |
| TGATCCATGTCATAGGAACC+AGG | - | chr7.1:3439274-3439293 | MS.gene050917:intron | 45.0% | |
| ! | ATTGGGGTGCCTTAATTGGT+TGG | - | chr7.1:3438996-3439015 | MS.gene050917:intron | 45.0% |
| ! | CATGATTGGGGTGCCTTAAT+TGG | - | chr7.1:3438992-3439011 | MS.gene050917:intron | 45.0% |
| ! | GACCAATTTTCCGTGTTGTG+AGG | + | chr7.1:3439354-3439373 | None:intergenic | 45.0% |
| ! | GCTTCTTTGTTTGCAGACTC+TGG | - | chr7.1:3439609-3439628 | MS.gene050917:CDS | 45.0% |
| !! | CCAGTAGTCTTGTTCCTTCA+TGG | - | chr7.1:3438767-3438786 | MS.gene050917:CDS | 45.0% |
| ATACTTCCCACCGGCAAGTA+CGG | - | chr7.1:3439379-3439398 | MS.gene050917:intron | 50.0% | |
| ATGGACCGGAGTGAAAACCT+TGG | - | chr7.1:3439646-3439665 | MS.gene050917:CDS | 50.0% | |
| GAATCCAGTTCCGTACTTGC+CGG | + | chr7.1:3439392-3439411 | None:intergenic | 50.0% | |
| GACAAAACAGGCTTCACTGG+AGG | - | chr7.1:3439484-3439503 | MS.gene050917:CDS | 50.0% | |
| GAGCTAACAACTCCATGGAC+CGG | - | chr7.1:3439632-3439651 | MS.gene050917:CDS | 50.0% | |
| GTACACTTCGCTAGGCATGA+AGG | - | chr7.1:3439706-3439725 | MS.gene050917:CDS | 50.0% | |
| GTACGGAACTGGATTCAACC+CGG | - | chr7.1:3439396-3439415 | MS.gene050917:intron | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | + | chr7.1:3439440-3439459 | None:intergenic | 50.0% | |
| TCTGGGAGCTAACAACTCCA+TGG | - | chr7.1:3439627-3439646 | MS.gene050917:CDS | 50.0% | |
| TTCTGTAAGCCAAGAGGGCA+AGG | + | chr7.1:3439434-3439453 | None:intergenic | 50.0% | |
| ! | AAGGTTTTCACTCCGGTCCA+TGG | + | chr7.1:3439647-3439666 | None:intergenic | 50.0% |
| ! | TACTTGCCGGTGGGAAGTAT+TGG | + | chr7.1:3439379-3439398 | None:intergenic | 50.0% |
| ! | TGGCACCAAGGTTTTCACTC+CGG | + | chr7.1:3439654-3439673 | None:intergenic | 50.0% |
| AACTGAGGGCCACAATCTGG+TGG | + | chr7.1:3438820-3438839 | None:intergenic | 55.0% | |
| AGAGTTCGGGGAAGCCATGA+AGG | + | chr7.1:3438784-3438803 | None:intergenic | 55.0% | |
| ATTGTGGCCCTCAGTTCCCT+CGG | - | chr7.1:3438824-3438843 | MS.gene050917:CDS | 55.0% | |
| CGCCATGAGTACCAGAGTTC+GGG | + | chr7.1:3438797-3438816 | None:intergenic | 55.0% | |
| CGTCACTGTCTCCAAAGCCA+CGG | + | chr7.1:3438874-3438893 | None:intergenic | 55.0% | |
| GCCATGAGTACCAGAGTTCG+GGG | + | chr7.1:3438796-3438815 | None:intergenic | 55.0% | |
| GCGCCATGAGTACCAGAGTT+CGG | + | chr7.1:3438798-3438817 | None:intergenic | 55.0% | |
| GGTCCTCCAATACTTCCCAC+CGG | - | chr7.1:3439370-3439389 | MS.gene050917:intron | 55.0% | |
| GTCTCCAAAGCCACGGAGAT+CGG | + | chr7.1:3438867-3438886 | None:intergenic | 55.0% | |
| TCCCCGAACTCTGGTACTCA+TGG | - | chr7.1:3438792-3438811 | MS.gene050917:CDS | 55.0% | |
| TCTCCAAAGCCACGGAGATC+GGG | + | chr7.1:3438866-3438885 | None:intergenic | 55.0% | |
| TTCATGGCTTCCCCGAACTC+TGG | - | chr7.1:3438783-3438802 | MS.gene050917:CDS | 55.0% | |
| !! | TTGCCGGTGGGAAGTATTGG+AGG | + | chr7.1:3439376-3439395 | None:intergenic | 55.0% |
| CCAGTTCCGTACTTGCCGGT+GGG | + | chr7.1:3439388-3439407 | None:intergenic | 60.0% | |
| CTCATGGCGCCACCAGATTG+TGG | - | chr7.1:3438808-3438827 | MS.gene050917:CDS | 60.0% | |
| GGGAACTGAGGGCCACAATC+TGG | + | chr7.1:3438823-3438842 | None:intergenic | 60.0% | |
| GTGGTAGCCGAGGGAACTGA+GGG | + | chr7.1:3438834-3438853 | None:intergenic | 60.0% | |
| TCCAGTTCCGTACTTGCCGG+TGG | + | chr7.1:3439389-3439408 | None:intergenic | 60.0% | |
| ! | AGCCAAGAGGGCAAGGTGTC+AGG | + | chr7.1:3439427-3439446 | None:intergenic | 60.0% |
| ! | CCAAGAGGGCAAGGTGTCAG+GGG | + | chr7.1:3439425-3439444 | None:intergenic | 60.0% |
| ! | GCCAAGAGGGCAAGGTGTCA+GGG | + | chr7.1:3439426-3439445 | None:intergenic | 60.0% |
| !! | GCAAGGTGTCAGGGGTATCC+GGG | + | chr7.1:3439417-3439436 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | + | chr7.1:3439418-3439437 | None:intergenic | 60.0% |
| AGCTACGGCGTGGTAGCCGA+GGG | + | chr7.1:3438843-3438862 | None:intergenic | 65.0% | |
| CCCACCGGCAAGTACGGAAC+TGG | - | chr7.1:3439385-3439404 | MS.gene050917:intron | 65.0% | |
| CCCCTGACACCTTGCCCTCT+TGG | - | chr7.1:3439422-3439441 | MS.gene050917:CDS | 65.0% | |
| CGTGGTAGCCGAGGGAACTG+AGG | + | chr7.1:3438835-3438854 | None:intergenic | 65.0% | |
| GCCACGGAGATCGGGAGCTA+CGG | + | chr7.1:3438858-3438877 | None:intergenic | 65.0% | |
| GCTCCCGATCTCCGTGGCTT+TGG | - | chr7.1:3438860-3438879 | MS.gene050917:CDS | 65.0% | |
| GAGCTACGGCGTGGTAGCCG+AGG | + | chr7.1:3438844-3438863 | None:intergenic | 70.0% | |
| GCCGTAGCTCCCGATCTCCG+TGG | - | chr7.1:3438854-3438873 | MS.gene050917:CDS | 70.0% | |
| GGAGATCGGGAGCTACGGCG+TGG | + | chr7.1:3438853-3438872 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3438692 | 3439871 | 3438692 | ID=MS.gene050917 |
| chr7.1 | mRNA | 3438692 | 3439871 | 3438692 | ID=MS.gene050917.t1;Parent=MS.gene050917 |
| chr7.1 | exon | 3439404 | 3439871 | 3439404 | ID=MS.gene050917.t1.exon1;Parent=MS.gene050917.t1 |
| chr7.1 | CDS | 3439404 | 3439871 | 3439404 | ID=cds.MS.gene050917.t1;Parent=MS.gene050917.t1 |
| chr7.1 | exon | 3439030 | 3439274 | 3439030 | ID=MS.gene050917.t1.exon2;Parent=MS.gene050917.t1 |
| chr7.1 | CDS | 3439030 | 3439274 | 3439030 | ID=cds.MS.gene050917.t1;Parent=MS.gene050917.t1 |
| chr7.1 | exon | 3438692 | 3438938 | 3438692 | ID=MS.gene050917.t1.exon3;Parent=MS.gene050917.t1 |
| chr7.1 | CDS | 3438692 | 3438938 | 3438692 | ID=cds.MS.gene050917.t1;Parent=MS.gene050917.t1 |
| Gene Sequence |
| Protein sequence |
