Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072515.t1 | XP_003626241.1 | 97.5 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 1.70E-180 | 641.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072515.t1 | I6YGS0 | 40.3 | 320 | 168 | 10 | 7 | 313 | 7 | 316 | 3.5e-60 | 233.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072515.t1 | G7KXM0 | 97.5 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 1.3e-180 | 641.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050922 | MS.gene072515 | 0.869202 | 3.69E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072515 | MS.gene025707 | PPI |
| MS.gene035367 | MS.gene072515 | PPI |
| MS.gene072515 | MS.gene012063 | PPI |
| MS.gene072515 | MS.gene035369 | PPI |
| MS.gene77823 | MS.gene072515 | PPI |
| MS.gene072515 | MS.gene035373 | PPI |
| MS.gene072515 | MS.gene07001 | PPI |
| MS.gene071504 | MS.gene072515 | PPI |
| MS.gene072515 | MS.gene066361 | PPI |
| MS.gene072515 | MS.gene035371 | PPI |
| MS.gene072515 | MS.gene071502 | PPI |
| MS.gene066360 | MS.gene072515 | PPI |
| MS.gene89620 | MS.gene072515 | PPI |
| MS.gene76453 | MS.gene072515 | PPI |
| MS.gene072515 | MS.gene22955 | PPI |
| MS.gene072515 | MS.gene071500 | PPI |
| MS.gene072515 | MS.gene041604 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072515.t1 | MTR_7g112970 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 640 |
| MS.gene072515.t1 | MTR_7g112960 | 86.207 | 319 | 41 | 1 | 1 | 316 | 1 | 319 | 0.0 | 576 |
| MS.gene072515.t1 | MTR_7g112963 | 86.520 | 319 | 40 | 1 | 1 | 316 | 1 | 319 | 0.0 | 573 |
| MS.gene072515.t1 | MTR_7g113020 | 77.429 | 319 | 69 | 2 | 1 | 316 | 1 | 319 | 0.0 | 522 |
| MS.gene072515.t1 | MTR_7g113010 | 87.544 | 281 | 32 | 1 | 1 | 278 | 1 | 281 | 0.0 | 520 |
| MS.gene072515.t1 | MTR_7g113030 | 76.803 | 319 | 71 | 1 | 1 | 316 | 1 | 319 | 0.0 | 516 |
| MS.gene072515.t1 | MTR_7g113050 | 76.803 | 319 | 71 | 2 | 1 | 316 | 1 | 319 | 0.0 | 514 |
| MS.gene072515.t1 | MTR_7g112615 | 76.176 | 319 | 73 | 2 | 1 | 316 | 1 | 319 | 0.0 | 509 |
| MS.gene072515.t1 | MTR_7g112620 | 75.235 | 319 | 76 | 2 | 1 | 316 | 1 | 319 | 0.0 | 505 |
| MS.gene072515.t1 | MTR_4g005160 | 67.492 | 323 | 97 | 5 | 1 | 316 | 1 | 322 | 8.86e-162 | 454 |
| MS.gene072515.t1 | MTR_4g120240 | 62.500 | 320 | 115 | 3 | 1 | 316 | 37 | 355 | 5.38e-150 | 425 |
| MS.gene072515.t1 | MTR_7g108825 | 64.151 | 318 | 111 | 3 | 1 | 316 | 1 | 317 | 1.76e-146 | 415 |
| MS.gene072515.t1 | MTR_7g113050 | 76.471 | 238 | 53 | 2 | 1 | 235 | 1 | 238 | 1.77e-134 | 381 |
| MS.gene072515.t1 | MTR_7g112615 | 76.050 | 238 | 54 | 2 | 1 | 235 | 1 | 238 | 3.60e-133 | 378 |
| MS.gene072515.t1 | MTR_8g076680 | 47.500 | 320 | 159 | 5 | 1 | 316 | 3 | 317 | 1.14e-105 | 311 |
| MS.gene072515.t1 | MTR_7g108825 | 63.713 | 237 | 83 | 3 | 1 | 235 | 1 | 236 | 2.09e-103 | 302 |
| MS.gene072515.t1 | MTR_7g112615 | 84.906 | 159 | 24 | 0 | 1 | 159 | 1 | 159 | 6.20e-101 | 294 |
| MS.gene072515.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 7.16e-88 | 261 |
| MS.gene072515.t1 | MTR_8g076680 | 46.862 | 239 | 120 | 3 | 1 | 235 | 3 | 238 | 4.55e-79 | 241 |
| MS.gene072515.t1 | MTR_2g090240 | 36.250 | 320 | 189 | 7 | 1 | 315 | 1 | 310 | 1.65e-66 | 211 |
| MS.gene072515.t1 | MTR_2g090245 | 36.875 | 320 | 187 | 8 | 1 | 315 | 1 | 310 | 4.55e-66 | 210 |
| MS.gene072515.t1 | MTR_7g112910 | 47.791 | 249 | 72 | 7 | 72 | 316 | 1 | 195 | 1.82e-65 | 204 |
| MS.gene072515.t1 | MTR_4g089060 | 36.250 | 320 | 188 | 7 | 1 | 315 | 1 | 309 | 5.08e-65 | 207 |
| MS.gene072515.t1 | MTR_4g089040 | 35.938 | 320 | 189 | 7 | 1 | 315 | 1 | 309 | 8.47e-64 | 204 |
| MS.gene072515.t1 | MTR_4g089060 | 33.718 | 347 | 187 | 8 | 1 | 315 | 1 | 336 | 6.41e-60 | 195 |
| MS.gene072515.t1 | MTR_3g024250 | 79.439 | 107 | 22 | 0 | 46 | 152 | 1 | 107 | 2.84e-57 | 181 |
| MS.gene072515.t1 | MTR_4g089060 | 38.362 | 232 | 133 | 4 | 1 | 228 | 1 | 226 | 7.53e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072515.t1 | AT3G05600 | 62.346 | 324 | 114 | 4 | 1 | 316 | 1 | 324 | 4.83e-152 | 429 |
| MS.gene072515.t1 | AT4G02340 | 60.252 | 317 | 124 | 2 | 1 | 316 | 1 | 316 | 8.09e-145 | 411 |
| MS.gene072515.t1 | AT4G15960 | 54.630 | 324 | 139 | 3 | 1 | 316 | 51 | 374 | 3.55e-132 | 381 |
| MS.gene072515.t1 | AT2G26740 | 58.879 | 321 | 124 | 4 | 4 | 316 | 1 | 321 | 1.16e-129 | 372 |
| MS.gene072515.t1 | AT2G26750 | 57.188 | 320 | 130 | 4 | 4 | 316 | 1 | 320 | 4.50e-125 | 360 |
| MS.gene072515.t1 | AT4G15955 | 52.174 | 322 | 121 | 5 | 5 | 316 | 6 | 304 | 1.17e-113 | 331 |
| MS.gene072515.t1 | AT3G05600 | 64.198 | 243 | 79 | 4 | 1 | 235 | 1 | 243 | 7.45e-113 | 327 |
| MS.gene072515.t1 | AT3G51000 | 49.530 | 319 | 151 | 6 | 4 | 316 | 5 | 319 | 2.88e-107 | 315 |
| MS.gene072515.t1 | AT4G15955 | 62.428 | 173 | 55 | 2 | 5 | 167 | 6 | 178 | 1.44e-75 | 230 |
| MS.gene072515.t1 | AT4G15955 | 60.116 | 173 | 59 | 2 | 5 | 167 | 6 | 178 | 7.18e-72 | 220 |
Find 94 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACAACTTCCTCCAAATT+TGG | 0.197478 | 7.4:+4023465 | None:intergenic |
| ACATAGGCTTTAACTCTTTC+AGG | 0.203556 | 7.4:+4025055 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.4:-4023478 | MS.gene072515:CDS |
| CTCTCAGCTCCCTTGGTTAT+CGG | 0.233890 | 7.4:-4025261 | MS.gene072515:CDS |
| TGATATCCTCAGCAGCTTCT+TGG | 0.242215 | 7.4:+4023415 | None:intergenic |
| CCATCAACAGGTTTCACTTT+GGG | 0.262116 | 7.4:+4025001 | None:intergenic |
| GATGGCATGCGAGCCTTATT+TGG | 0.268655 | 7.4:-4024983 | MS.gene072515:CDS |
| CTTCCTTGTGGCTCATGATT+GGG | 0.281967 | 7.4:-4025113 | MS.gene072515:CDS |
| TCTTCCTTGTGGCTCATGAT+TGG | 0.288857 | 7.4:-4025114 | MS.gene072515:CDS |
| ATAACAGGAACTAGGGAAAA+TGG | 0.297439 | 7.4:-4024353 | MS.gene072515:intron |
| GGTTTCACTTTGGGGTTTCT+TGG | 0.301325 | 7.4:+4025010 | None:intergenic |
| GTACAAAGCCCCTCCCTTCT+TGG | 0.301476 | 7.4:-4024222 | MS.gene072515:CDS |
| TCACCAGTTATGAACTTTAC+TGG | 0.310577 | 7.4:+4023558 | None:intergenic |
| AACCTGTTCTGGGCTATCTT+TGG | 0.320528 | 7.4:+4024318 | None:intergenic |
| CGCCATGAATACCAGAGTTC+GGG | 0.321570 | 7.4:+4025298 | None:intergenic |
| ATAATAGTCATCTCCAAATA+AGG | 0.326858 | 7.4:+4024970 | None:intergenic |
| GATTTAGTTTACACTTCTTC+TGG | 0.330124 | 7.4:-4023531 | MS.gene072515:CDS |
| GCTCCAGATCTTCGTGGTTA+TGG | 0.348958 | 7.4:-4025232 | MS.gene072515:CDS |
| ATGCTCTTGATAACCTGTTC+TGG | 0.358215 | 7.4:+4024307 | None:intergenic |
| CTATTATATCTGCAGATTCC+AGG | 0.362815 | 7.4:-4024954 | MS.gene072515:intron |
| TGTATAACTGCTTACCGAAC+TGG | 0.368608 | 7.4:+4025195 | None:intergenic |
| TTTGAAAAGACTGGATTTAG+TGG | 0.371587 | 7.4:-4024163 | MS.gene072515:CDS |
| GCTTCTAAATTTGAAAAGAC+TGG | 0.372902 | 7.4:-4024172 | MS.gene072515:CDS |
| GTTATCAAGAGCATGCTTAC+AGG | 0.380993 | 7.4:-4024298 | MS.gene072515:CDS |
| TGAGATTTCTGTAGAAGTTA+AGG | 0.381104 | 7.4:+4024137 | None:intergenic |
| TTTGGAGGAAGTTGTTATAC+AGG | 0.383747 | 7.4:-4023460 | MS.gene072515:CDS |
| GAAGGGAGGGGCTTTGTACT+TGG | 0.389547 | 7.4:+4024226 | None:intergenic |
| TCCCCGAACTCTGGTATTCA+TGG | 0.400658 | 7.4:-4025300 | MS.gene072515:CDS |
| CGTTCTTTGGGTAAGATTAG+TGG | 0.401266 | 7.4:+4024262 | None:intergenic |
| GAGCTCACGGCAGCATGGAC+TGG | 0.405747 | 7.4:-4023597 | MS.gene072515:CDS |
| GTGCCAGTAAAGTTCATAAC+TGG | 0.409298 | 7.4:-4023561 | MS.gene072515:CDS |
| CATAGGCTTTAACTCTTTCA+GGG | 0.412776 | 7.4:+4025056 | None:intergenic |
| CCCAAAGTGAAACCTGTTGA+TGG | 0.418758 | 7.4:-4025001 | MS.gene072515:CDS |
| TCTCAGCTCCCTTGGTTATC+GGG | 0.422067 | 7.4:-4025260 | MS.gene072515:CDS |
| CAATCTATATAACAGGAACT+AGG | 0.423694 | 7.4:-4024361 | MS.gene072515:intron |
| TGTTTATGTTCATAGAAATT+GGG | 0.428721 | 7.4:-4023619 | MS.gene072515:intron |
| ATTGTTGCTCTCAGCTCCCT+TGG | 0.441960 | 7.4:-4025268 | MS.gene072515:CDS |
| GCGCCATGAATACCAGAGTT+CGG | 0.442920 | 7.4:+4025297 | None:intergenic |
| TCACCATAACCACGAAGATC+TGG | 0.446912 | 7.4:+4025229 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+TGG | 0.460486 | 7.4:+4025325 | None:intergenic |
| TGCCAAAGATAGCCCAGAAC+AGG | 0.465178 | 7.4:-4024320 | MS.gene072515:CDS |
| GCCATCAACAGGTTTCACTT+TGG | 0.465827 | 7.4:+4025000 | None:intergenic |
| AAGGCTCGCATGCCATCAAC+AGG | 0.466113 | 7.4:+4024989 | None:intergenic |
| CCTCCCTTCTTGGCTCTCGC+AGG | 0.469469 | 7.4:-4024212 | MS.gene072515:CDS |
| CATCAACAGGTTTCACTTTG+GGG | 0.472252 | 7.4:+4025002 | None:intergenic |
| CACTTGGTTGGTGACATCGT+TGG | 0.474476 | 7.4:-4025166 | MS.gene072515:CDS |
| ATGCTTACAGGTCGGACTAC+TGG | 0.478167 | 7.4:-4024286 | MS.gene072515:CDS |
| GGGAGCTGAGAGCAACAATC+TGG | 0.483314 | 7.4:+4025272 | None:intergenic |
| TATACAATCTTCCACTTGGT+TGG | 0.484085 | 7.4:-4025178 | MS.gene072515:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:-4025358 | MS.gene072515:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.491817 | 7.4:-4025112 | MS.gene072515:CDS |
| TTCACGGCTTCCCCGAACTC+TGG | 0.493835 | 7.4:-4025309 | MS.gene072515:CDS |
| TGCTCTTGATAACCTGTTCT+GGG | 0.497008 | 7.4:+4024308 | None:intergenic |
| CTGCGAGAGCCAAGAAGGGA+GGG | 0.508145 | 7.4:+4024213 | None:intergenic |
| GTATAACTGCTTACCGAACT+GGG | 0.514137 | 7.4:+4025196 | None:intergenic |
| GTTGGTCTCATCGACTCGCT+TGG | 0.518409 | 7.4:-4025148 | MS.gene072515:CDS |
| CATGATTGGGGTGCCATCGT+TGG | 0.524943 | 7.4:-4025100 | MS.gene072515:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.4:-4023475 | MS.gene072515:CDS |
| TGCGAGAGCCAAGAAGGGAG+GGG | 0.536685 | 7.4:+4024214 | None:intergenic |
| GAGGAAGTTGTTATACAGGA+TGG | 0.538845 | 7.4:-4023456 | MS.gene072515:CDS |
| AATCTATATAACAGGAACTA+GGG | 0.539991 | 7.4:-4024360 | MS.gene072515:intron |
| ACCACTCTCGATGTATTGCT+TGG | 0.548140 | 7.4:+4023506 | None:intergenic |
| CAGTTATACAATCTTCCACT+TGG | 0.551753 | 7.4:-4025182 | MS.gene072515:CDS |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.557400 | 7.4:-4025349 | MS.gene072515:CDS |
| TGACACTGATGTCCCCAGTT+CGG | 0.560761 | 7.4:-4025209 | MS.gene072515:CDS |
| TCTTCCTGCGAGAGCCAAGA+AGG | 0.562501 | 7.4:+4024208 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.4:-4025385 | MS.gene072515:CDS |
| CGGAACACTCAGACACACAT+AGG | 0.568178 | 7.4:+4025039 | None:intergenic |
| CCTGCGAGAGCCAAGAAGGG+AGG | 0.575958 | 7.4:+4024212 | None:intergenic |
| ATTGGGGTGCCATCGTTGGT+TGG | 0.587085 | 7.4:-4025096 | MS.gene072515:CDS |
| GAAAAGACTGGATTTAGTGG+TGG | 0.588504 | 7.4:-4024160 | MS.gene072515:CDS |
| AGAGTTCGGGGAAGCCGTGA+AGG | 0.588682 | 7.4:+4025311 | None:intergenic |
| GCGGTCGCTCCAGATCTTCG+TGG | 0.594935 | 7.4:-4025238 | MS.gene072515:CDS |
| TCATAGAAATTGGGAGCTCA+CGG | 0.607116 | 7.4:-4023610 | MS.gene072515:intron |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.608978 | 7.4:-4023602 | MS.gene072515:CDS |
| TTGGGGTTTCTTGGTAACAA+CGG | 0.609164 | 7.4:+4025019 | None:intergenic |
| GAGCGACCGCCCGATAACCA+AGG | 0.609516 | 7.4:+4025251 | None:intergenic |
| CAACAACCAAGAAGCTGCTG+AGG | 0.614308 | 7.4:-4023421 | MS.gene072515:CDS |
| AGCGACCGCCCGATAACCAA+GGG | 0.616077 | 7.4:+4025252 | None:intergenic |
| CTTCCTGCGAGAGCCAAGAA+GGG | 0.622917 | 7.4:+4024209 | None:intergenic |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.4:+4025110 | None:intergenic |
| AGCTGAGAGCAACAATCTGG+TGG | 0.629150 | 7.4:+4025275 | None:intergenic |
| CAACGATGTCACCAACCAAG+TGG | 0.634014 | 7.4:+4025167 | None:intergenic |
| AGTTGTTATACAGGATGGTG+TGG | 0.637871 | 7.4:-4023451 | MS.gene072515:CDS |
| AACACCAAAGAAGAGATGGA+AGG | 0.649645 | 7.4:-4025415 | None:intergenic |
| ACCAAGCAATACATCGAGAG+TGG | 0.651403 | 7.4:-4023507 | MS.gene072515:CDS |
| TCAAGAGCATGCTTACAGGT+CGG | 0.653704 | 7.4:-4024294 | MS.gene072515:CDS |
| TGTTGATCAAGTCTTCCTTG+TGG | 0.670046 | 7.4:-4025125 | MS.gene072515:CDS |
| AAGCAATACATCGAGAGTGG+TGG | 0.673299 | 7.4:-4023504 | MS.gene072515:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:-4025395 | MS.gene072515:CDS |
| TATAACTGCTTACCGAACTG+GGG | 0.680481 | 7.4:+4025197 | None:intergenic |
| GCAAAGATACCAACCAACGA+TGG | 0.687950 | 7.4:+4025087 | None:intergenic |
| CAGCTCCCTTGGTTATCGGG+CGG | 0.692571 | 7.4:-4025257 | MS.gene072515:CDS |
| GCCATGAATACCAGAGTTCG+GGG | 0.700987 | 7.4:+4025299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACTTTATATTTATTTTG+AGG | - | chr7.4:4024832-4024851 | MS.gene072515:intron | 10.0% |
| !! | AATAGATTATATTAATGGAA+TGG | + | chr7.4:4024342-4024361 | None:intergenic | 15.0% |
| !! | ATCATGTATTTCAAATAAAT+GGG | + | chr7.4:4024057-4024076 | None:intergenic | 15.0% |
| !! | ATCTTAACAGATTATTTAAA+TGG | - | chr7.4:4023925-4023944 | MS.gene072515:intron | 15.0% |
| !! | GCAATAATAGATTATATTAA+TGG | + | chr7.4:4024347-4024366 | None:intergenic | 15.0% |
| !! | TAAATTATTCATATCCATAT+TGG | + | chr7.4:4024947-4024966 | None:intergenic | 15.0% |
| !! | TATCATGTATTTCAAATAAA+TGG | + | chr7.4:4024058-4024077 | None:intergenic | 15.0% |
| !! | TTTGATAAATAAATAAAGTG+TGG | - | chr7.4:4023968-4023987 | MS.gene072515:intron | 15.0% |
| !!! | TATTTATTTTGAGGTTTTTA+TGG | - | chr7.4:4024841-4024860 | MS.gene072515:intron | 15.0% |
| !!! | TTTTAACTTGATTAAGTAAA+TGG | - | chr7.4:4024112-4024131 | MS.gene072515:intron | 15.0% |
| !! | AAAAATGGCAAGAAAAAATA+AGG | + | chr7.4:4024679-4024698 | None:intergenic | 20.0% |
| !! | AAAATATAAGAATTCAAACC+TGG | + | chr7.4:4023847-4023866 | None:intergenic | 20.0% |
| !! | TAACAGATTATTTAAATGGA+TGG | - | chr7.4:4023929-4023948 | MS.gene072515:intron | 20.0% |
| !! | TCATGTATTTCAAATAAATG+GGG | + | chr7.4:4024056-4024075 | None:intergenic | 20.0% |
| !! | TGTTTATGTTCATAGAAATT+GGG | - | chr7.4:4025161-4025180 | MS.gene072515:CDS | 20.0% |
| !! | TTATCTCATATGTTAATCAT+AGG | - | chr7.4:4024286-4024305 | MS.gene072515:CDS | 20.0% |
| !!! | ATGAGATAACCTTTTTTTTT+AGG | + | chr7.4:4024275-4024294 | None:intergenic | 20.0% |
| !!! | TATTTCTATTTGATCCAATA+TGG | - | chr7.4:4024930-4024949 | MS.gene072515:intron | 20.0% |
| !!! | TGAGATAACCTTTTTTTTTA+GGG | + | chr7.4:4024274-4024293 | None:intergenic | 20.0% |
| ! | AAATCAGTTGAATAAGATGA+GGG | + | chr7.4:4024787-4024806 | None:intergenic | 25.0% |
| ! | AATCTATATAACAGGAACTA+GGG | - | chr7.4:4024420-4024439 | MS.gene072515:intron | 25.0% |
| ! | ACATAAACACAAACATACAT+TGG | + | chr7.4:4025150-4025169 | None:intergenic | 25.0% |
| ! | ATAATAGTCATCTCCAAATA+AGG | + | chr7.4:4023813-4023832 | None:intergenic | 25.0% |
| ! | CAAATAGAAATATAAGTGCA+AGG | + | chr7.4:4024922-4024941 | None:intergenic | 25.0% |
| ! | GTGTTTATGTTCATAGAAAT+TGG | - | chr7.4:4025160-4025179 | MS.gene072515:CDS | 25.0% |
| !!! | GAGATAACCTTTTTTTTTAG+GGG | + | chr7.4:4024273-4024292 | None:intergenic | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.4:4023422-4023441 | MS.gene072515:CDS | 30.0% | |
| AATCAGACAATCTTAACAGA+AGG | - | chr7.4:4025068-4025087 | MS.gene072515:CDS | 30.0% | |
| ACATGTTCCCCTAAAAAAAA+AGG | - | chr7.4:4024263-4024282 | MS.gene072515:CDS | 30.0% | |
| ACTTTAGGCCTTAGAATATT+GGG | + | chr7.4:4024868-4024887 | None:intergenic | 30.0% | |
| ATAACAACTTCCTCCAAATT+TGG | + | chr7.4:4025318-4025337 | None:intergenic | 30.0% | |
| CAAATCAGTTGAATAAGATG+AGG | + | chr7.4:4024788-4024807 | None:intergenic | 30.0% | |
| CAATCTATATAACAGGAACT+AGG | - | chr7.4:4024419-4024438 | MS.gene072515:intron | 30.0% | |
| CTAGTTCCTGTTATATAGAT+TGG | + | chr7.4:4024421-4024440 | None:intergenic | 30.0% | |
| CTCATCTTATTCAACTGATT+TGG | - | chr7.4:4024786-4024805 | MS.gene072515:intron | 30.0% | |
| GCTTCTAAATTTGAAAAGAC+TGG | - | chr7.4:4024608-4024627 | MS.gene072515:intron | 30.0% | |
| GGTACTAGAAAATACTACTT+TGG | + | chr7.4:4024008-4024027 | None:intergenic | 30.0% | |
| GTATAACAAATTAGTTCCAG+AGG | + | chr7.4:4024817-4024836 | None:intergenic | 30.0% | |
| TACACAATTGTAATATCCGA+AGG | + | chr7.4:4024984-4025003 | None:intergenic | 30.0% | |
| TGAGATTTCTGTAGAAGTTA+AGG | + | chr7.4:4024646-4024665 | None:intergenic | 30.0% | |
| TTTGAAAAGACTGGATTTAG+TGG | - | chr7.4:4024617-4024636 | MS.gene072515:intron | 30.0% | |
| ! | ATCAGTTGTTGTTGATCTAA+TGG | - | chr7.4:4024310-4024329 | MS.gene072515:CDS | 30.0% |
| ! | GATTTAGTTTACACTTCTTC+TGG | - | chr7.4:4025249-4025268 | MS.gene072515:CDS | 30.0% |
| ! | TAATTGTGCTTTTAGTCCTT+CGG | - | chr7.4:4024965-4024984 | MS.gene072515:CDS | 30.0% |
| !! | ATGAGATAAAAAGCGTTCTT+TGG | + | chr7.4:4024534-4024553 | None:intergenic | 30.0% |
| !! | TGAGATAAAAAGCGTTCTTT+GGG | + | chr7.4:4024533-4024552 | None:intergenic | 30.0% |
| ACAGTCTAAGCTAAGACTTT+AGG | + | chr7.4:4024883-4024902 | None:intergenic | 35.0% | |
| ATAACAGGAACTAGGGAAAA+TGG | - | chr7.4:4024427-4024446 | MS.gene072515:intron | 35.0% | |
| ATTAACTAAATGTCTCGTGC+CGG | - | chr7.4:4024703-4024722 | MS.gene072515:intron | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.4:4023431-4023450 | MS.gene072515:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | - | chr7.4:4025302-4025321 | MS.gene072515:CDS | 35.0% | |
| CAGTTATACAATCTTCCACT+TGG | - | chr7.4:4023598-4023617 | MS.gene072515:CDS | 35.0% | |
| CCAACTCCAATCTATATAAC+AGG | - | chr7.4:4024412-4024431 | MS.gene072515:intron | 35.0% | |
| CCTGTTATATAGATTGGAGT+TGG | + | chr7.4:4024415-4024434 | None:intergenic | 35.0% | |
| CTATTATATCTGCAGATTCC+AGG | - | chr7.4:4023826-4023845 | MS.gene072515:intron | 35.0% | |
| CTTTAGGCCTTAGAATATTG+GGG | + | chr7.4:4024867-4024886 | None:intergenic | 35.0% | |
| GACTTTAGGCCTTAGAATAT+TGG | + | chr7.4:4024869-4024888 | None:intergenic | 35.0% | |
| TATACAATCTTCCACTTGGT+TGG | - | chr7.4:4023602-4023621 | MS.gene072515:CDS | 35.0% | |
| TCACCAGTTATGAACTTTAC+TGG | + | chr7.4:4025225-4025244 | None:intergenic | 35.0% | |
| TTACTCTTGCTCACTTCAAA+TGG | - | chr7.4:4023893-4023912 | MS.gene072515:intron | 35.0% | |
| TTGAAGTGAGCAAGAGTAAA+GGG | + | chr7.4:4023892-4023911 | None:intergenic | 35.0% | |
| TTTATGGCCCCAATATTCTA+AGG | - | chr7.4:4024857-4024876 | MS.gene072515:intron | 35.0% | |
| TTTGGAGGAAGTTGTTATAC+AGG | - | chr7.4:4025320-4025339 | MS.gene072515:CDS | 35.0% | |
| ! | ACATAGGCTTTAACTCTTTC+AGG | + | chr7.4:4023728-4023747 | None:intergenic | 35.0% |
| ! | CATAGGCTTTAACTCTTTCA+GGG | + | chr7.4:4023727-4023746 | None:intergenic | 35.0% |
| ! | GTCATTTGAAACAAGAGTCT+GGG | - | chr7.4:4024224-4024243 | MS.gene072515:CDS | 35.0% |
| ! | TACCAAACTCGTTTTCCTTA+CGG | - | chr7.4:4024024-4024043 | MS.gene072515:intron | 35.0% |
| ! | TGTCATTTGAAACAAGAGTC+TGG | - | chr7.4:4024223-4024242 | MS.gene072515:CDS | 35.0% |
| ! | TTTGAAGTGAGCAAGAGTAA+AGG | + | chr7.4:4023893-4023912 | None:intergenic | 35.0% |
| ACCAACCATGTGTATGTATG+TGG | + | chr7.4:4024747-4024766 | None:intergenic | 40.0% | |
| AGAAATATAAGTGCAAGGCC+AGG | + | chr7.4:4024917-4024936 | None:intergenic | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.4:4023385-4023404 | MS.gene072515:CDS | 40.0% | |
| AGTTGTTATACAGGATGGTG+TGG | - | chr7.4:4025329-4025348 | MS.gene072515:CDS | 40.0% | |
| ATGTGCCACATACATACACA+TGG | - | chr7.4:4024739-4024758 | MS.gene072515:intron | 40.0% | |
| CATCAACAGGTTTCACTTTG+GGG | + | chr7.4:4023781-4023800 | None:intergenic | 40.0% | |
| CCATCAACAGGTTTCACTTT+GGG | + | chr7.4:4023782-4023801 | None:intergenic | 40.0% | |
| CGTTCTTTGGGTAAGATTAG+TGG | + | chr7.4:4024521-4024540 | None:intergenic | 40.0% | |
| GAAAAGACTGGATTTAGTGG+TGG | - | chr7.4:4024620-4024639 | MS.gene072515:intron | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.4:4025305-4025324 | MS.gene072515:CDS | 40.0% | |
| GAGGAAGTTGTTATACAGGA+TGG | - | chr7.4:4025324-4025343 | MS.gene072515:CDS | 40.0% | |
| GTATAACTGCTTACCGAACT+GGG | + | chr7.4:4023587-4023606 | None:intergenic | 40.0% | |
| GTGCCAGTAAAGTTCATAAC+TGG | - | chr7.4:4025219-4025238 | MS.gene072515:CDS | 40.0% | |
| TATAACTGCTTACCGAACTG+GGG | + | chr7.4:4023586-4023605 | None:intergenic | 40.0% | |
| TCATAGAAATTGGGAGCTCA+CGG | - | chr7.4:4025170-4025189 | MS.gene072515:CDS | 40.0% | |
| TGTATAACTGCTTACCGAAC+TGG | + | chr7.4:4023588-4023607 | None:intergenic | 40.0% | |
| TGTTGATCAAGTCTTCCTTG+TGG | - | chr7.4:4023655-4023674 | MS.gene072515:intron | 40.0% | |
| ! | ATGCTCTTGATAACCTGTTC+TGG | + | chr7.4:4024476-4024495 | None:intergenic | 40.0% |
| ! | GTTATCAAGAGCATGCTTAC+AGG | - | chr7.4:4024482-4024501 | MS.gene072515:intron | 40.0% |
| ! | TGCTCTTGATAACCTGTTCT+GGG | + | chr7.4:4024475-4024494 | None:intergenic | 40.0% |
| ! | TTGGGGTTTCTTGGTAACAA+CGG | + | chr7.4:4023764-4023783 | None:intergenic | 40.0% |
| ! | TTTGAAACAAGAGTCTGGGA+AGG | - | chr7.4:4024228-4024247 | MS.gene072515:CDS | 40.0% |
| !! | AACTGATTTGGACAAACCTC+TGG | - | chr7.4:4024798-4024817 | MS.gene072515:intron | 40.0% |
| !! | CCAGTTGTTTTGTTCCTTCA+CGG | - | chr7.4:4023455-4023474 | MS.gene072515:CDS | 40.0% |
| AAGCAATACATCGAGAGTGG+TGG | - | chr7.4:4025276-4025295 | MS.gene072515:CDS | 45.0% | |
| ACCAAGCAATACATCGAGAG+TGG | - | chr7.4:4025273-4025292 | MS.gene072515:CDS | 45.0% | |
| ACCACTCTCGATGTATTGCT+TGG | + | chr7.4:4025277-4025296 | None:intergenic | 45.0% | |
| AGCCGTAAGGAAAACGAGTT+TGG | + | chr7.4:4024029-4024048 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.4:4023395-4023414 | MS.gene072515:CDS | 45.0% | |
| CCCAAAGTGAAACCTGTTGA+TGG | - | chr7.4:4023779-4023798 | MS.gene072515:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+TGG | + | chr7.4:4023458-4023477 | None:intergenic | 45.0% | |
| CTTCCTTGTGGCTCATGATT+GGG | - | chr7.4:4023667-4023686 | MS.gene072515:intron | 45.0% | |
| GCAAAGATACCAACCAACGA+TGG | + | chr7.4:4023696-4023715 | None:intergenic | 45.0% | |
| GCCACATACATACACATGGT+TGG | - | chr7.4:4024743-4024762 | MS.gene072515:intron | 45.0% | |
| GCCATCAACAGGTTTCACTT+TGG | + | chr7.4:4023783-4023802 | None:intergenic | 45.0% | |
| TAAATGGGGAAAGAGCCGTA+AGG | + | chr7.4:4024042-4024061 | None:intergenic | 45.0% | |
| TCACCATAACCACGAAGATC+TGG | + | chr7.4:4023554-4023573 | None:intergenic | 45.0% | |
| TCTTCCTTGTGGCTCATGAT+TGG | - | chr7.4:4023666-4023685 | MS.gene072515:intron | 45.0% | |
| TGATATCCTCAGCAGCTTCT+TGG | + | chr7.4:4025368-4025387 | None:intergenic | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | - | chr7.4:4023668-4023687 | MS.gene072515:intron | 45.0% | |
| ! | AACCTGTTCTGGGCTATCTT+TGG | + | chr7.4:4024465-4024484 | None:intergenic | 45.0% |
| ! | ACATACACATGGTTGGTCGA+AGG | - | chr7.4:4024750-4024769 | MS.gene072515:intron | 45.0% |
| ! | TCAAGAGCATGCTTACAGGT+CGG | - | chr7.4:4024486-4024505 | MS.gene072515:intron | 45.0% |
| !! | GGTTTCACTTTGGGGTTTCT+TGG | + | chr7.4:4023773-4023792 | None:intergenic | 45.0% |
| !! | ATTTAGTTAATTTAAAAAAA+TGG | + | chr7.4:4024694-4024713 | None:intergenic | 5.0% |
| AGACTGTCTAACCCTTAGCC+TGG | - | chr7.4:4024896-4024915 | MS.gene072515:intron | 50.0% | |
| AGCTGAGAGCAACAATCTGG+TGG | + | chr7.4:4023508-4023527 | None:intergenic | 50.0% | |
| ATAAGTGCAAGGCCAGGCTA+AGG | + | chr7.4:4024911-4024930 | None:intergenic | 50.0% | |
| ATGCTTACAGGTCGGACTAC+TGG | - | chr7.4:4024494-4024513 | MS.gene072515:intron | 50.0% | |
| ATTGTTGCTCTCAGCTCCCT+TGG | - | chr7.4:4023512-4023531 | MS.gene072515:CDS | 50.0% | |
| CAACAACCAAGAAGCTGCTG+AGG | - | chr7.4:4025359-4025378 | MS.gene072515:CDS | 50.0% | |
| CAACGATGTCACCAACCAAG+TGG | + | chr7.4:4023616-4023635 | None:intergenic | 50.0% | |
| CGCCATGAATACCAGAGTTC+GGG | + | chr7.4:4023485-4023504 | None:intergenic | 50.0% | |
| CGGAACACTCAGACACACAT+AGG | + | chr7.4:4023744-4023763 | None:intergenic | 50.0% | |
| CTCTCAGCTCCCTTGGTTAT+CGG | - | chr7.4:4023519-4023538 | MS.gene072515:CDS | 50.0% | |
| GCACATGTCACATGATCGAC+CGG | + | chr7.4:4024725-4024744 | None:intergenic | 50.0% | |
| GCCATGAATACCAGAGTTCG+GGG | + | chr7.4:4023484-4023503 | None:intergenic | 50.0% | |
| GCGCCATGAATACCAGAGTT+CGG | + | chr7.4:4023486-4023505 | None:intergenic | 50.0% | |
| GCTCCAGATCTTCGTGGTTA+TGG | - | chr7.4:4023548-4023567 | MS.gene072515:CDS | 50.0% | |
| TAAGTGCAAGGCCAGGCTAA+GGG | + | chr7.4:4024910-4024929 | None:intergenic | 50.0% | |
| TCCCCGAACTCTGGTATTCA+TGG | - | chr7.4:4023480-4023499 | MS.gene072515:CDS | 50.0% | |
| TCTCAGCTCCCTTGGTTATC+GGG | - | chr7.4:4023520-4023539 | MS.gene072515:CDS | 50.0% | |
| TGACACTGATGTCCCCAGTT+CGG | - | chr7.4:4023571-4023590 | MS.gene072515:CDS | 50.0% | |
| TGCCAAAGATAGCCCAGAAC+AGG | - | chr7.4:4024460-4024479 | MS.gene072515:intron | 50.0% | |
| !! | CACTTGGTTGGTGACATCGT+TGG | - | chr7.4:4023614-4023633 | MS.gene072515:intron | 50.0% |
| !! | GATGGCATGCGAGCCTTATT+TGG | - | chr7.4:4023797-4023816 | MS.gene072515:intron | 50.0% |
| AAGGCTCGCATGCCATCAAC+AGG | + | chr7.4:4023794-4023813 | None:intergenic | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | + | chr7.4:4023673-4023692 | None:intergenic | 55.0% | |
| CTTCCTGCGAGAGCCAAGAA+GGG | + | chr7.4:4024574-4024593 | None:intergenic | 55.0% | |
| GGGAGCTGAGAGCAACAATC+TGG | + | chr7.4:4023511-4023530 | None:intergenic | 55.0% | |
| GTACAAAGCCCCTCCCTTCT+TGG | - | chr7.4:4024558-4024577 | MS.gene072515:intron | 55.0% | |
| TCTTCCTGCGAGAGCCAAGA+AGG | + | chr7.4:4024575-4024594 | None:intergenic | 55.0% | |
| ! | ATTGGGGTGCCATCGTTGGT+TGG | - | chr7.4:4023684-4023703 | MS.gene072515:intron | 55.0% |
| ! | CATGATTGGGGTGCCATCGT+TGG | - | chr7.4:4023680-4023699 | MS.gene072515:intron | 55.0% |
| ! | GAAGGGAGGGGCTTTGTACT+TGG | + | chr7.4:4024557-4024576 | None:intergenic | 55.0% |
| !! | GTTGGTCTCATCGACTCGCT+TGG | - | chr7.4:4023632-4023651 | MS.gene072515:intron | 55.0% |
| AGAGTTCGGGGAAGCCGTGA+AGG | + | chr7.4:4023472-4023491 | None:intergenic | 60.0% | |
| AGCGACCGCCCGATAACCAA+GGG | + | chr7.4:4023531-4023550 | None:intergenic | 60.0% | |
| ATTGGGAGCTCACGGCAGCA+TGG | - | chr7.4:4025178-4025197 | MS.gene072515:CDS | 60.0% | |
| CAGCTCCCTTGGTTATCGGG+CGG | - | chr7.4:4023523-4023542 | MS.gene072515:CDS | 60.0% | |
| CTGCGAGAGCCAAGAAGGGA+GGG | + | chr7.4:4024570-4024589 | None:intergenic | 60.0% | |
| TGCGAGAGCCAAGAAGGGAG+GGG | + | chr7.4:4024569-4024588 | None:intergenic | 60.0% | |
| TTCACGGCTTCCCCGAACTC+TGG | - | chr7.4:4023471-4023490 | MS.gene072515:CDS | 60.0% | |
| CCTGCGAGAGCCAAGAAGGG+AGG | + | chr7.4:4024571-4024590 | None:intergenic | 65.0% | |
| GAGCGACCGCCCGATAACCA+AGG | + | chr7.4:4023532-4023551 | None:intergenic | 65.0% | |
| GAGCTCACGGCAGCATGGAC+TGG | - | chr7.4:4025183-4025202 | MS.gene072515:CDS | 65.0% | |
| GCGGTCGCTCCAGATCTTCG+TGG | - | chr7.4:4023542-4023561 | MS.gene072515:CDS | 65.0% | |
| ! | CCTCCCTTCTTGGCTCTCGC+AGG | - | chr7.4:4024568-4024587 | MS.gene072515:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4023380 | 4025422 | 4023380 | ID=MS.gene072515 |
| chr7.4 | mRNA | 4023380 | 4025422 | 4023380 | ID=MS.gene072515.t1;Parent=MS.gene072515 |
| chr7.4 | exon | 4024955 | 4025422 | 4024955 | ID=MS.gene072515.t1.exon1;Parent=MS.gene072515.t1 |
| chr7.4 | CDS | 4024955 | 4025422 | 4024955 | ID=cds.MS.gene072515.t1;Parent=MS.gene072515.t1 |
| chr7.4 | exon | 4024133 | 4024368 | 4024133 | ID=MS.gene072515.t1.exon2;Parent=MS.gene072515.t1 |
| chr7.4 | CDS | 4024133 | 4024368 | 4024133 | ID=cds.MS.gene072515.t1;Parent=MS.gene072515.t1 |
| chr7.4 | exon | 4023380 | 4023626 | 4023380 | ID=MS.gene072515.t1.exon3;Parent=MS.gene072515.t1 |
| chr7.4 | CDS | 4023380 | 4023626 | 4023380 | ID=cds.MS.gene072515.t1;Parent=MS.gene072515.t1 |
| Gene Sequence |
| Protein sequence |
