Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072516.t1 | XP_003626240.2 | 86.5 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 5.90E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072516.t1 | I6YGS0 | 38.4 | 320 | 177 | 9 | 7 | 316 | 7 | 316 | 2.5e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072516.t1 | G7KXL9 | 86.5 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 4.2e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050923 | MS.gene072516 | 0.892204 | 1.97E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072516 | MS.gene071500 | PPI |
| MS.gene072516 | MS.gene041604 | PPI |
| MS.gene066360 | MS.gene072516 | PPI |
| MS.gene072516 | MS.gene025707 | PPI |
| MS.gene89620 | MS.gene072516 | PPI |
| MS.gene072516 | MS.gene22955 | PPI |
| MS.gene072516 | MS.gene035369 | PPI |
| MS.gene071504 | MS.gene072516 | PPI |
| MS.gene76453 | MS.gene072516 | PPI |
| MS.gene072516 | MS.gene035373 | PPI |
| MS.gene072516 | MS.gene07001 | PPI |
| MS.gene072516 | MS.gene012063 | PPI |
| MS.gene072516 | MS.gene035371 | PPI |
| MS.gene072516 | MS.gene071502 | PPI |
| MS.gene072516 | MS.gene066361 | PPI |
| MS.gene77823 | MS.gene072516 | PPI |
| MS.gene035367 | MS.gene072516 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072516.t1 | MTR_7g112960 | 86.520 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 0.0 | 593 |
| MS.gene072516.t1 | MTR_7g112963 | 84.953 | 319 | 48 | 0 | 1 | 319 | 1 | 319 | 0.0 | 585 |
| MS.gene072516.t1 | MTR_7g112970 | 86.207 | 319 | 41 | 1 | 1 | 319 | 1 | 316 | 0.0 | 584 |
| MS.gene072516.t1 | MTR_7g113010 | 95.730 | 281 | 12 | 0 | 1 | 281 | 1 | 281 | 0.0 | 568 |
| MS.gene072516.t1 | MTR_7g113020 | 75.389 | 321 | 75 | 2 | 1 | 319 | 1 | 319 | 0.0 | 516 |
| MS.gene072516.t1 | MTR_7g113050 | 74.143 | 321 | 79 | 2 | 1 | 319 | 1 | 319 | 0.0 | 509 |
| MS.gene072516.t1 | MTR_7g113030 | 73.041 | 319 | 86 | 0 | 1 | 319 | 1 | 319 | 0.0 | 506 |
| MS.gene072516.t1 | MTR_7g112615 | 73.520 | 321 | 81 | 2 | 1 | 319 | 1 | 319 | 0.0 | 503 |
| MS.gene072516.t1 | MTR_7g112620 | 72.274 | 321 | 85 | 2 | 1 | 319 | 1 | 319 | 2.49e-180 | 501 |
| MS.gene072516.t1 | MTR_4g005160 | 66.154 | 325 | 101 | 5 | 1 | 319 | 1 | 322 | 5.95e-159 | 447 |
| MS.gene072516.t1 | MTR_4g120240 | 60.125 | 321 | 124 | 3 | 1 | 319 | 37 | 355 | 3.67e-146 | 416 |
| MS.gene072516.t1 | MTR_7g108825 | 60.625 | 320 | 122 | 3 | 1 | 319 | 1 | 317 | 8.86e-144 | 408 |
| MS.gene072516.t1 | MTR_7g113050 | 73.333 | 240 | 60 | 2 | 1 | 238 | 1 | 238 | 2.86e-132 | 376 |
| MS.gene072516.t1 | MTR_7g112615 | 72.500 | 240 | 62 | 2 | 1 | 238 | 1 | 238 | 1.29e-130 | 372 |
| MS.gene072516.t1 | MTR_8g076680 | 47.826 | 322 | 156 | 5 | 1 | 318 | 3 | 316 | 8.59e-106 | 312 |
| MS.gene072516.t1 | MTR_7g108825 | 60.669 | 239 | 90 | 3 | 1 | 238 | 1 | 236 | 4.68e-102 | 299 |
| MS.gene072516.t1 | MTR_7g112615 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 3.06e-98 | 287 |
| MS.gene072516.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.96e-85 | 254 |
| MS.gene072516.t1 | MTR_8g076680 | 47.934 | 242 | 116 | 3 | 1 | 238 | 3 | 238 | 2.35e-80 | 244 |
| MS.gene072516.t1 | MTR_2g090240 | 38.199 | 322 | 183 | 7 | 1 | 318 | 1 | 310 | 8.48e-68 | 214 |
| MS.gene072516.t1 | MTR_2g090245 | 38.509 | 322 | 182 | 8 | 1 | 318 | 1 | 310 | 4.77e-67 | 213 |
| MS.gene072516.t1 | MTR_4g089060 | 35.714 | 322 | 192 | 6 | 1 | 319 | 1 | 310 | 1.15e-66 | 211 |
| MS.gene072516.t1 | MTR_4g089040 | 36.025 | 322 | 191 | 6 | 1 | 319 | 1 | 310 | 1.90e-65 | 208 |
| MS.gene072516.t1 | MTR_7g112910 | 47.012 | 251 | 74 | 7 | 72 | 319 | 1 | 195 | 1.32e-64 | 202 |
| MS.gene072516.t1 | MTR_4g089060 | 33.238 | 349 | 191 | 7 | 1 | 319 | 1 | 337 | 1.49e-61 | 199 |
| MS.gene072516.t1 | MTR_4g089060 | 37.339 | 233 | 137 | 3 | 1 | 231 | 1 | 226 | 8.73e-56 | 181 |
| MS.gene072516.t1 | MTR_3g024250 | 76.415 | 106 | 25 | 0 | 47 | 152 | 2 | 107 | 1.60e-55 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072516.t1 | AT3G05600 | 62.654 | 324 | 114 | 4 | 1 | 318 | 1 | 323 | 1.57e-154 | 436 |
| MS.gene072516.t1 | AT4G02340 | 59.688 | 320 | 124 | 3 | 1 | 319 | 1 | 316 | 2.65e-144 | 410 |
| MS.gene072516.t1 | AT4G15960 | 53.538 | 325 | 144 | 3 | 1 | 319 | 51 | 374 | 7.74e-129 | 372 |
| MS.gene072516.t1 | AT2G26740 | 56.522 | 322 | 133 | 4 | 4 | 319 | 1 | 321 | 2.84e-123 | 356 |
| MS.gene072516.t1 | AT2G26750 | 55.452 | 321 | 137 | 4 | 4 | 319 | 1 | 320 | 1.11e-119 | 347 |
| MS.gene072516.t1 | AT3G05600 | 64.344 | 244 | 80 | 4 | 1 | 238 | 1 | 243 | 1.71e-115 | 333 |
| MS.gene072516.t1 | AT4G15955 | 50.462 | 325 | 125 | 5 | 5 | 319 | 6 | 304 | 1.87e-111 | 325 |
| MS.gene072516.t1 | AT3G51000 | 50.000 | 318 | 152 | 6 | 4 | 318 | 5 | 318 | 1.02e-108 | 319 |
| MS.gene072516.t1 | AT4G15955 | 61.850 | 173 | 56 | 2 | 5 | 167 | 6 | 178 | 1.51e-74 | 227 |
| MS.gene072516.t1 | AT4G15955 | 61.212 | 165 | 54 | 2 | 5 | 159 | 6 | 170 | 9.16e-70 | 215 |
Find 94 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTACAGGTCGGAATTC+TGG | 0.183747 | 7.4:-4042424 | MS.gene072516:CDS |
| CCTTCTTTGGGTAGGATTAA+TGG | 0.188302 | 7.4:+4042400 | None:intergenic |
| ATAATCACTTCCTCCAAATT+TGG | 0.201843 | 7.4:+4041446 | None:intergenic |
| TAAGAAAGATGTGCCAAATT+TGG | 0.214008 | 7.4:-4041459 | MS.gene072516:CDS |
| GATATAGTTTATGCTTCTTT+TGG | 0.237327 | 7.4:-4041512 | MS.gene072516:CDS |
| ATGAGATAACAAGCCTTCTT+TGG | 0.249562 | 7.4:+4042387 | None:intergenic |
| CCATCAACAGGTTTCACTTT+GGG | 0.262116 | 7.4:+4043462 | None:intergenic |
| TAACTTCCTCAGCAGCTTCT+TGG | 0.283005 | 7.4:+4041396 | None:intergenic |
| ATACAAAGCCCCTCCCTTCT+TGG | 0.294620 | 7.4:-4042351 | MS.gene072516:CDS |
| GGTTTCACTTTGGGGTTTCT+TGG | 0.301325 | 7.4:+4043471 | None:intergenic |
| GTGATCAAGGCTATGCTTAC+AGG | 0.301645 | 7.4:-4042436 | MS.gene072516:CDS |
| TTTCCTTGTGGCTCATGATT+GGG | 0.323649 | 7.4:-4043574 | MS.gene072516:CDS |
| GCTTCTAAATTTGAAAAGTC+GGG | 0.325588 | 7.4:-4042301 | MS.gene072516:CDS |
| CATGAGCCACAAGGAAAATT+TGG | 0.330260 | 7.4:+4043580 | None:intergenic |
| GAAGTTCATCACAGGCGATT+TGG | 0.348503 | 7.4:-4041534 | MS.gene072516:CDS |
| TGCTTACAGGTCGGAATTCT+GGG | 0.353613 | 7.4:-4042423 | MS.gene072516:CDS |
| TGAGATTTCTATAGTAGTTA+AGG | 0.359150 | 7.4:+4042266 | None:intergenic |
| CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 7.4:-4043561 | MS.gene072516:CDS |
| GATGGCATGCAAGCTTTGTT+TGG | 0.377529 | 7.4:-4043444 | MS.gene072516:CDS |
| CTGTTATGTTCATAGGAATT+GGG | 0.394679 | 7.4:-4041600 | MS.gene072516:intron |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.4:-4043738 | MS.gene072516:CDS |
| TTATTATATCTGCAGATTCC+AGG | 0.403584 | 7.4:-4043415 | MS.gene072516:intron |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.4:+4043690 | None:intergenic |
| ACATAAGCCTTGACTTTCTC+AGG | 0.407263 | 7.4:+4043516 | None:intergenic |
| CGCCAAGAGTACCAGATATC+AGG | 0.407327 | 7.4:+4043759 | None:intergenic |
| TTCCTGATATCTGGTACTCT+TGG | 0.411858 | 7.4:-4043761 | MS.gene072516:CDS |
| AATTCGGCTTCTGCTTTCCC+TGG | 0.413011 | 7.4:+4042481 | None:intergenic |
| ATAGCCTTGATCACAAGTTC+TGG | 0.414013 | 7.4:+4042445 | None:intergenic |
| CCCAAAGTGAAACCTGTTGA+TGG | 0.418758 | 7.4:-4043462 | MS.gene072516:CDS |
| TGAGATAACAAGCCTTCTTT+GGG | 0.420102 | 7.4:+4042388 | None:intergenic |
| TGGGCTACCCTTGGCAAATT+CGG | 0.422231 | 7.4:+4042465 | None:intergenic |
| GGCTTTGTATTTGAAACATC+GGG | 0.424711 | 7.4:+4042364 | None:intergenic |
| TGCTTCTAAATTTGAAAAGT+CGG | 0.427783 | 7.4:-4042302 | MS.gene072516:CDS |
| AAAGCTTGCATGCCATCAAC+AGG | 0.432275 | 7.4:+4043450 | None:intergenic |
| GAGAGCCGAGAGCCGCAATC+TGG | 0.462159 | 7.4:+4043733 | None:intergenic |
| GCCATCAACAGGTTTCACTT+TGG | 0.465827 | 7.4:+4043461 | None:intergenic |
| CATCAACAGGTTTCACTTTG+GGG | 0.472252 | 7.4:+4043463 | None:intergenic |
| CTTCACTGGAACTTTAACCT+TGG | 0.473353 | 7.4:+4041553 | None:intergenic |
| TTTGGAGGAAGTGATTATAC+AGG | 0.473618 | 7.4:-4041441 | MS.gene072516:CDS |
| CACAAGTTCTGGGCTACCCT+TGG | 0.489572 | 7.4:+4042456 | None:intergenic |
| AAAATGCATGTCGCAGAGAA+AGG | 0.491525 | 7.4:-4043819 | MS.gene072516:CDS |
| TAGCCTTGATCACAAGTTCT+GGG | 0.495550 | 7.4:+4042446 | None:intergenic |
| ATTGCGGCTCTCGGCTCTCT+CGG | 0.495623 | 7.4:-4043729 | MS.gene072516:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.498854 | 7.4:-4041456 | MS.gene072516:CDS |
| TCGCCTGTGATGAACTTCAC+TGG | 0.499059 | 7.4:+4041539 | None:intergenic |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.4:-4043693 | MS.gene072516:CDS |
| CAATTCATGTGACAGGAACC+AGG | 0.511502 | 7.4:-4042499 | MS.gene072516:intron |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.512333 | 7.4:+4042337 | None:intergenic |
| CCATGAAGGAACAAAACAAC+AGG | 0.513488 | 7.4:+4043786 | None:intergenic |
| TAGCCCAGAACTTGTGATCA+AGG | 0.517411 | 7.4:-4042449 | MS.gene072516:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.518936 | 7.4:-4043573 | MS.gene072516:CDS |
| ACAGAGATGCCAACCAATGA+TGG | 0.522500 | 7.4:+4043548 | None:intergenic |
| CGTGTAGCTACTAACTGAAG+TGG | 0.524060 | 7.4:+4043656 | None:intergenic |
| CCATTAATCCTACCCAAAGA+AGG | 0.525729 | 7.4:-4042400 | MS.gene072516:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.4:-4043699 | MS.gene072516:CDS |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.528638 | 7.4:+4042342 | None:intergenic |
| GAGCTCACAGCAGCATGGAC+CGG | 0.535565 | 7.4:-4041578 | MS.gene072516:CDS |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.549085 | 7.4:+4043736 | None:intergenic |
| GTCGCAGAGAAAGGAAAAGA+AGG | 0.549089 | 7.4:-4043810 | MS.gene072516:CDS |
| ATTGGGGTGCCATCATTGGT+TGG | 0.551746 | 7.4:-4043557 | MS.gene072516:CDS |
| ATAACAAGCCTTCTTTGGGT+AGG | 0.551798 | 7.4:+4042392 | None:intergenic |
| GGGCTTTGTATTTGAAACAT+CGG | 0.553097 | 7.4:+4042363 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.555575 | 7.4:-4043846 | MS.gene072516:CDS |
| TGGAACTTTAACCTTGGCTC+CGG | 0.556514 | 7.4:+4041559 | None:intergenic |
| TGTGAGAGCCAAGAAGGGAG+GGG | 0.561355 | 7.4:+4042343 | None:intergenic |
| CTTCTAAATTTGAAAAGTCG+GGG | 0.579960 | 7.4:-4042300 | MS.gene072516:CDS |
| AGCAGCATGGACCGGAGCCA+AGG | 0.582534 | 7.4:-4041570 | MS.gene072516:CDS |
| AGCAGAAGCCGAATTTGCCA+AGG | 0.586217 | 7.4:-4042473 | MS.gene072516:CDS |
| TTTGAAAAGTCGGGGTTCAG+TGG | 0.587683 | 7.4:-4042292 | MS.gene072516:CDS |
| GAAAAGTCGGGGTTCAGTGG+TGG | 0.588050 | 7.4:-4042289 | MS.gene072516:CDS |
| ACTAACTGAAGTGGGAGCAT+CGG | 0.592618 | 7.4:+4043665 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.4:-4043745 | MS.gene072516:CDS |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.599078 | 7.4:+4042341 | None:intergenic |
| GTTTCGTCCTGAGAAAGTCA+AGG | 0.602031 | 7.4:-4043523 | MS.gene072516:CDS |
| GTTGCTCTAATTGACTCACT+TGG | 0.604533 | 7.4:-4043609 | MS.gene072516:CDS |
| TTGGGGTTTCTTGGTAACAA+CGG | 0.609164 | 7.4:+4043480 | None:intergenic |
| GTTCCAGTGAAGTTCATCAC+AGG | 0.615248 | 7.4:-4041542 | MS.gene072516:CDS |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.4:+4043571 | None:intergenic |
| TAACAACCAAGAAGCTGCTG+AGG | 0.623686 | 7.4:-4041402 | MS.gene072516:CDS |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.624050 | 7.4:+4042338 | None:intergenic |
| TCTAATTGACTCACTTGGTG+TGG | 0.624858 | 7.4:-4043604 | MS.gene072516:CDS |
| AGATATCAGGAAAACCATGA+AGG | 0.624982 | 7.4:+4043772 | None:intergenic |
| ATTGGGAGCTCACAGCAGCA+TGG | 0.628562 | 7.4:-4041583 | MS.gene072516:CDS |
| AGGAGTAGAGCACAGAACAG+TGG | 0.630212 | 7.4:-4043856 | MS.gene072516:CDS |
| AGTGATTATACAGGAAGGTG+TGG | 0.637871 | 7.4:-4041432 | MS.gene072516:CDS |
| AATTCATGTGACAGGAACCA+GGG | 0.640650 | 7.4:-4042498 | MS.gene072516:intron |
| GAGGAAGTGATTATACAGGA+AGG | 0.643542 | 7.4:-4041437 | MS.gene072516:CDS |
| AAGCAATACATCGAGAGTGG+TGG | 0.645763 | 7.4:-4041485 | MS.gene072516:CDS |
| GTGTAGCTACTAACTGAAGT+GGG | 0.649111 | 7.4:+4043657 | None:intergenic |
| GCGAAGCAATACATCGAGAG+TGG | 0.652428 | 7.4:-4041488 | MS.gene072516:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.4:+4043703 | None:intergenic |
| TCAAGGCTATGCTTACAGGT+CGG | 0.686752 | 7.4:-4042432 | MS.gene072516:CDS |
| GCAGAAGCCGAATTTGCCAA+GGG | 0.692748 | 7.4:-4042472 | MS.gene072516:CDS |
| TTGGTAACAACGGAACACTG+AGG | 0.754230 | 7.4:+4043490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAATAATAAATATTT+TGG | - | chr7.4:4043252-4043271 | MS.gene072516:intron | 0.0% |
| !! | AAATGAAAAGAAATAAAAAT+AGG | + | chr7.4:4042993-4043012 | None:intergenic | 10.0% |
| !! | AATGAAAAGAAATAAAAATA+GGG | + | chr7.4:4042992-4043011 | None:intergenic | 10.0% |
| !!! | ACAAGTTTTTTAAAGTTAAA+GGG | + | chr7.4:4042139-4042158 | None:intergenic | 15.0% |
| !!! | ATAATTTGTGACAATTTTTT+TGG | - | chr7.4:4042287-4042306 | MS.gene072516:CDS | 15.0% |
| !!! | TTTTCCATTATTAATTAATC+CGG | + | chr7.4:4042613-4042632 | None:intergenic | 15.0% |
| !! | AACATGTTTGAATTTATGTT+GGG | + | chr7.4:4043483-4043502 | None:intergenic | 20.0% |
| !! | AGTGCAAATAAACATATAAA+TGG | + | chr7.4:4043056-4043075 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAAAAAGTTCAA+AGG | - | chr7.4:4042104-4042123 | MS.gene072516:intron | 20.0% |
| !! | TGTACGATCATAATATAAAA+AGG | + | chr7.4:4043085-4043104 | None:intergenic | 20.0% |
| !!! | AATAAATATTTTGGTATGTG+CGG | - | chr7.4:4043261-4043280 | MS.gene072516:intron | 20.0% |
| !!! | AATAATGCATTCACTTATTT+TGG | - | chr7.4:4042647-4042666 | MS.gene072516:intron | 20.0% |
| !!! | ATTTTCCTTTAACAAAATGT+GGG | - | chr7.4:4042411-4042430 | MS.gene072516:CDS | 20.0% |
| !!! | ATTTTGTTTATAATTGAGAC+CGG | - | chr7.4:4042591-4042610 | MS.gene072516:intron | 20.0% |
| !!! | CACAAGTTTTTTAAAGTTAA+AGG | + | chr7.4:4042140-4042159 | None:intergenic | 20.0% |
| !!! | GGTTAATTTTTACTTACATA+AGG | - | chr7.4:4041888-4041907 | MS.gene072516:intron | 20.0% |
| !!! | TATATGTTTATTTGCACTTT+TGG | - | chr7.4:4043058-4043077 | MS.gene072516:intron | 20.0% |
| !!! | TTATTTTGGAATTTACAGAT+GGG | - | chr7.4:4042661-4042680 | MS.gene072516:intron | 20.0% |
| ! | AATTCTTCTGTTATGTTCAT+AGG | - | chr7.4:4043615-4043634 | MS.gene072516:CDS | 25.0% |
| ! | AGTTACTAAAACAAATTCGA+AGG | + | chr7.4:4041915-4041934 | None:intergenic | 25.0% |
| ! | CAAACACATGTAAAATTATC+AGG | + | chr7.4:4042170-4042189 | None:intergenic | 25.0% |
| ! | GAACATGTTTGAATTTATGT+TGG | + | chr7.4:4043484-4043503 | None:intergenic | 25.0% |
| ! | GTTACTAAAACAAATTCGAA+GGG | + | chr7.4:4041914-4041933 | None:intergenic | 25.0% |
| ! | TGAGATTTCTATAGTAGTTA+AGG | + | chr7.4:4042959-4042978 | None:intergenic | 25.0% |
| ! | TGCTTCTAAATTTGAAAAGT+CGG | - | chr7.4:4042920-4042939 | MS.gene072516:intron | 25.0% |
| ! | TTATTGCATAAACCAAAAGA+AGG | + | chr7.4:4042029-4042048 | None:intergenic | 25.0% |
| ! | TTCAGAAAAATACAACACTT+CGG | + | chr7.4:4043287-4043306 | None:intergenic | 25.0% |
| ! | TTGTAACGATTGAAACATAT+AGG | - | chr7.4:4043139-4043158 | MS.gene072516:intron | 25.0% |
| ! | TTTGAATTTATGTTGGGATT+TGG | + | chr7.4:4043477-4043496 | None:intergenic | 25.0% |
| ! | TTTGAGTGAACACAATAATT+TGG | - | chr7.4:4043166-4043185 | MS.gene072516:intron | 25.0% |
| !! | CATTTTCCTTTAACAAAATG+TGG | - | chr7.4:4042410-4042429 | MS.gene072516:CDS | 25.0% |
| !! | CTTGAAATGCTTTTATACAT+TGG | - | chr7.4:4041867-4041886 | MS.gene072516:intron | 25.0% |
| !! | GATATAGTTTATGCTTCTTT+TGG | - | chr7.4:4043710-4043729 | MS.gene072516:CDS | 25.0% |
| !!! | ATTCTTTTTTGGATATGAAG+GGG | - | chr7.4:4042543-4042562 | MS.gene072516:intron | 25.0% |
| !!! | CTTATTTTGGAATTTACAGA+TGG | - | chr7.4:4042660-4042679 | MS.gene072516:intron | 25.0% |
| !!! | GATTCTTTTTTGGATATGAA+GGG | - | chr7.4:4042542-4042561 | MS.gene072516:intron | 25.0% |
| !!! | GTTTAAACGTGATTCTTTTT+TGG | - | chr7.4:4042532-4042551 | MS.gene072516:intron | 25.0% |
| !!! | TGATTCTTTTTTGGATATGA+AGG | - | chr7.4:4042541-4042560 | MS.gene072516:intron | 25.0% |
| AAATGCAAGCTTTCAATTTG+TGG | - | chr7.4:4041935-4041954 | MS.gene072516:intron | 30.0% | |
| AACATGTTCGGATTTATGTT+GGG | + | chr7.4:4043523-4043542 | None:intergenic | 30.0% | |
| AATATTCCAATTCATGTGAC+AGG | - | chr7.4:4042716-4042735 | MS.gene072516:intron | 30.0% | |
| AATTTGTGGTTGTGTTAGAA+TGG | - | chr7.4:4041949-4041968 | MS.gene072516:intron | 30.0% | |
| AGTTACAATCTATGGAAGAT+AGG | - | chr7.4:4042315-4042334 | MS.gene072516:CDS | 30.0% | |
| ATAATCACTTCCTCCAAATT+TGG | + | chr7.4:4043779-4043798 | None:intergenic | 30.0% | |
| ATTTGTGGTTGTGTTAGAAT+GGG | - | chr7.4:4041950-4041969 | MS.gene072516:intron | 30.0% | |
| CAATCTCACATATTTAGAAG+AGG | - | chr7.4:4043190-4043209 | MS.gene072516:intron | 30.0% | |
| CTCTCTCAATATGATGTTAA+GGG | - | chr7.4:4042378-4042397 | MS.gene072516:CDS | 30.0% | |
| CTGTTATGTTCATAGGAATT+GGG | - | chr7.4:4043622-4043641 | MS.gene072516:CDS | 30.0% | |
| CTTCTAAATTTGAAAAGTCG+GGG | - | chr7.4:4042922-4042941 | MS.gene072516:intron | 30.0% | |
| GAGACCGGATTAATTAATAA+TGG | - | chr7.4:4042606-4042625 | MS.gene072516:intron | 30.0% | |
| GCTTCTAAATTTGAAAAGTC+GGG | - | chr7.4:4042921-4042940 | MS.gene072516:intron | 30.0% | |
| GTTACAATCTATGGAAGATA+GGG | - | chr7.4:4042316-4042335 | MS.gene072516:CDS | 30.0% | |
| TAAGAAAGATGTGCCAAATT+TGG | - | chr7.4:4043763-4043782 | MS.gene072516:CDS | 30.0% | |
| TCAAAATACAAAAACGAACC+TGG | + | chr7.4:4041828-4041847 | None:intergenic | 30.0% | |
| TCTCTCTCAATATGATGTTA+AGG | - | chr7.4:4042377-4042396 | MS.gene072516:CDS | 30.0% | |
| TCTGTTATGTTCATAGGAAT+TGG | - | chr7.4:4043621-4043640 | MS.gene072516:CDS | 30.0% | |
| TGTCACATGAATTGGAATAT+TGG | + | chr7.4:4042717-4042736 | None:intergenic | 30.0% | |
| TTAACCACATCAAAATAGTC+AGG | + | chr7.4:4043428-4043447 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | - | chr7.4:4041807-4041826 | MS.gene072516:intron | 30.0% | |
| ! | CAATACCCACATTTTGTTAA+AGG | + | chr7.4:4042419-4042438 | None:intergenic | 30.0% |
| !!! | AAAAAGTTCAAAGGCACTTT+TGG | - | chr7.4:4042113-4042132 | MS.gene072516:intron | 30.0% |
| !!! | TTCTTTTTTGGATATGAAGG+GGG | - | chr7.4:4042544-4042563 | MS.gene072516:intron | 30.0% |
| AAATCCGAACATGTTCATAG+AGG | - | chr7.4:4043528-4043547 | MS.gene072516:CDS | 35.0% | |
| AGATATCAGGAAAACCATGA+AGG | + | chr7.4:4041453-4041472 | None:intergenic | 35.0% | |
| AGTTCCTCTATGAACATGTT+CGG | + | chr7.4:4043535-4043554 | None:intergenic | 35.0% | |
| ATGAGATAACAAGCCTTCTT+TGG | + | chr7.4:4042838-4042857 | None:intergenic | 35.0% | |
| GAACATGTTCGGATTTATGT+TGG | + | chr7.4:4043524-4043543 | None:intergenic | 35.0% | |
| GAGAGAGAGAAAATTAAGAG+TGG | + | chr7.4:4042365-4042384 | None:intergenic | 35.0% | |
| GATTGTTCAGACTTCAAACT+TGG | - | chr7.4:4043340-4043359 | MS.gene072516:intron | 35.0% | |
| TATAAATGGCACTTGAACCA+TGG | + | chr7.4:4043042-4043061 | None:intergenic | 35.0% | |
| TCTTACTAACAACTGTTCTG+AGG | + | chr7.4:4042244-4042263 | None:intergenic | 35.0% | |
| TGAGATAACAAGCCTTCTTT+GGG | + | chr7.4:4042837-4042856 | None:intergenic | 35.0% | |
| TGGAAGTGAGTTACAATCTA+TGG | - | chr7.4:4042307-4042326 | MS.gene072516:CDS | 35.0% | |
| TTCGGATTTATGTTGGGATT+TGG | + | chr7.4:4043517-4043536 | None:intergenic | 35.0% | |
| TTGCATAAACCAAAAGAAGG+AGG | + | chr7.4:4042026-4042045 | None:intergenic | 35.0% | |
| TTTGGAGGAAGTGATTATAC+AGG | - | chr7.4:4043781-4043800 | MS.gene072516:CDS | 35.0% | |
| ! | ACACTTTTACCTCCTTCTTT+TGG | - | chr7.4:4042014-4042033 | MS.gene072516:intron | 35.0% |
| ! | GGCTTTGTATTTGAAACATC+GGG | + | chr7.4:4042861-4042880 | None:intergenic | 35.0% |
| ! | GGGCTTTGTATTTGAAACAT+CGG | + | chr7.4:4042862-4042881 | None:intergenic | 35.0% |
| ! | TACACGATTTTGCATTTGGT+TGG | - | chr7.4:4041583-4041602 | MS.gene072516:CDS | 35.0% |
| ! | TAGCTACACGATTTTGCATT+TGG | - | chr7.4:4041579-4041598 | MS.gene072516:CDS | 35.0% |
| ! | TATTGTTGTTACTCATGCTG+AGG | - | chr7.4:4042434-4042453 | MS.gene072516:CDS | 35.0% |
| ! | TTCATGGTTTTCCTGATATC+TGG | - | chr7.4:4041452-4041471 | MS.gene072516:CDS | 35.0% |
| !! | AGTCAGGTTGGATTAAGTTT+GGG | + | chr7.4:4043412-4043431 | None:intergenic | 35.0% |
| !! | TAGTCAGGTTGGATTAAGTT+TGG | + | chr7.4:4043413-4043432 | None:intergenic | 35.0% |
| AAAATGCATGTCGCAGAGAA+AGG | - | chr7.4:4041403-4041422 | MS.gene072516:CDS | 40.0% | |
| AATTCATGTGACAGGAACCA+GGG | - | chr7.4:4042724-4042743 | MS.gene072516:intron | 40.0% | |
| ACATAAGCCTTGACTTTCTC+AGG | + | chr7.4:4041709-4041728 | None:intergenic | 40.0% | |
| AGTGATTATACAGGAAGGTG+TGG | - | chr7.4:4043790-4043809 | MS.gene072516:CDS | 40.0% | |
| ATAACAAGCCTTCTTTGGGT+AGG | + | chr7.4:4042833-4042852 | None:intergenic | 40.0% | |
| CATCAACAGGTTTCACTTTG+GGG | + | chr7.4:4041762-4041781 | None:intergenic | 40.0% | |
| CATGAGCCACAAGGAAAATT+TGG | + | chr7.4:4041645-4041664 | None:intergenic | 40.0% | |
| CCACATCAAAATAGTCAGGT+TGG | + | chr7.4:4043424-4043443 | None:intergenic | 40.0% | |
| CCATCAACAGGTTTCACTTT+GGG | + | chr7.4:4041763-4041782 | None:intergenic | 40.0% | |
| CCATGAAGGAACAAAACAAC+AGG | + | chr7.4:4041439-4041458 | None:intergenic | 40.0% | |
| CCATTAATCCTACCCAAAGA+AGG | - | chr7.4:4042822-4042841 | MS.gene072516:intron | 40.0% | |
| CCTTCTTTGGGTAGGATTAA+TGG | + | chr7.4:4042825-4042844 | None:intergenic | 40.0% | |
| CTTCACTGGAACTTTAACCT+TGG | + | chr7.4:4043672-4043691 | None:intergenic | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.4:4043766-4043785 | MS.gene072516:CDS | 40.0% | |
| GAGGAAGTGATTATACAGGA+AGG | - | chr7.4:4043785-4043804 | MS.gene072516:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGT+GGG | + | chr7.4:4041568-4041587 | None:intergenic | 40.0% | |
| TGCTGAGGTAACACTAATCA+AGG | - | chr7.4:4042449-4042468 | MS.gene072516:CDS | 40.0% | |
| TTCCTGATATCTGGTACTCT+TGG | - | chr7.4:4041461-4041480 | MS.gene072516:CDS | 40.0% | |
| TTTCCTTGTGGCTCATGATT+GGG | - | chr7.4:4041648-4041667 | MS.gene072516:intron | 40.0% | |
| ! | ATAGCCTTGATCACAAGTTC+TGG | + | chr7.4:4042780-4042799 | None:intergenic | 40.0% |
| ! | GTTGCTCTAATTGACTCACT+TGG | - | chr7.4:4041613-4041632 | MS.gene072516:intron | 40.0% |
| ! | TAGCCTTGATCACAAGTTCT+GGG | + | chr7.4:4042779-4042798 | None:intergenic | 40.0% |
| ! | TCTAATTGACTCACTTGGTG+TGG | - | chr7.4:4041618-4041637 | MS.gene072516:intron | 40.0% |
| ! | TGTGGACCAAATTTTCCTTG+TGG | - | chr7.4:4041636-4041655 | MS.gene072516:intron | 40.0% |
| ! | TTGGGGTTTCTTGGTAACAA+CGG | + | chr7.4:4041745-4041764 | None:intergenic | 40.0% |
| ! | TTTTCCTTGTGGCTCATGAT+TGG | - | chr7.4:4041647-4041666 | MS.gene072516:intron | 40.0% |
| !!! | CCAACCTGACTATTTTGATG+TGG | - | chr7.4:4043421-4043440 | MS.gene072516:CDS | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+TGG | - | chr7.4:4041436-4041455 | MS.gene072516:CDS | 40.0% |
| AAAGCTTGCATGCCATCAAC+AGG | + | chr7.4:4041775-4041794 | None:intergenic | 45.0% | |
| AACTAGTTGTCCCTTGTCCA+TGG | - | chr7.4:4043022-4043041 | MS.gene072516:intron | 45.0% | |
| AAGCAATACATCGAGAGTGG+TGG | - | chr7.4:4043737-4043756 | MS.gene072516:CDS | 45.0% | |
| ACAGAGATGCCAACCAATGA+TGG | + | chr7.4:4041677-4041696 | None:intergenic | 45.0% | |
| ATGCTTACAGGTCGGAATTC+TGG | - | chr7.4:4042798-4042817 | MS.gene072516:intron | 45.0% | |
| CAATTCATGTGACAGGAACC+AGG | - | chr7.4:4042723-4042742 | MS.gene072516:intron | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.4:4041376-4041395 | MS.gene072516:CDS | 45.0% | |
| CCCAAAGTGAAACCTGTTGA+TGG | - | chr7.4:4041760-4041779 | MS.gene072516:intron | 45.0% | |
| CGTGTAGCTACTAACTGAAG+TGG | + | chr7.4:4041569-4041588 | None:intergenic | 45.0% | |
| CTGGTTCCTGTCACATGAAT+TGG | + | chr7.4:4042725-4042744 | None:intergenic | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | + | chr7.4:4042887-4042906 | None:intergenic | 45.0% | |
| GAAGTTCATCACAGGCGATT+TGG | - | chr7.4:4043688-4043707 | MS.gene072516:CDS | 45.0% | |
| GCCATCAACAGGTTTCACTT+TGG | + | chr7.4:4041764-4041783 | None:intergenic | 45.0% | |
| GTCGCAGAGAAAGGAAAAGA+AGG | - | chr7.4:4041412-4041431 | MS.gene072516:CDS | 45.0% | |
| GTGATCAAGGCTATGCTTAC+AGG | - | chr7.4:4042786-4042805 | MS.gene072516:intron | 45.0% | |
| GTTCCAGTGAAGTTCATCAC+AGG | - | chr7.4:4043680-4043699 | MS.gene072516:CDS | 45.0% | |
| GTTTCGTCCTGAGAAAGTCA+AGG | - | chr7.4:4041699-4041718 | MS.gene072516:intron | 45.0% | |
| TAACAACCAAGAAGCTGCTG+AGG | - | chr7.4:4043820-4043839 | MS.gene072516:CDS | 45.0% | |
| TAACTTCCTCAGCAGCTTCT+TGG | + | chr7.4:4043829-4043848 | None:intergenic | 45.0% | |
| TAGCCCAGAACTTGTGATCA+AGG | - | chr7.4:4042773-4042792 | MS.gene072516:intron | 45.0% | |
| TCAAGGCTATGCTTACAGGT+CGG | - | chr7.4:4042790-4042809 | MS.gene072516:intron | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | + | chr7.4:4042888-4042907 | None:intergenic | 45.0% | |
| TGCTTACAGGTCGGAATTCT+GGG | - | chr7.4:4042799-4042818 | MS.gene072516:intron | 45.0% | |
| TGGAACTTTAACCTTGGCTC+CGG | + | chr7.4:4043666-4043685 | None:intergenic | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | - | chr7.4:4041649-4041668 | MS.gene072516:intron | 45.0% | |
| TTTGAAAAGTCGGGGTTCAG+TGG | - | chr7.4:4042930-4042949 | MS.gene072516:intron | 45.0% | |
| ! | ACTAACTGAAGTGGGAGCAT+CGG | + | chr7.4:4041560-4041579 | None:intergenic | 45.0% |
| ! | CAGGTTGGATTAAGTTTGGG+TGG | + | chr7.4:4043409-4043428 | None:intergenic | 45.0% |
| ! | TTGGTAACAACGGAACACTG+AGG | + | chr7.4:4041735-4041754 | None:intergenic | 45.0% |
| !! | GATGGCATGCAAGCTTTGTT+TGG | - | chr7.4:4041778-4041797 | MS.gene072516:intron | 45.0% |
| !! | GGATATGAAGGGGGTATTTG+AGG | - | chr7.4:4042553-4042572 | MS.gene072516:intron | 45.0% |
| !! | GGTTTCACTTTGGGGTTTCT+TGG | + | chr7.4:4041754-4041773 | None:intergenic | 45.0% |
| !!! | AAATTGTTTTTTTTTAATAT+GGG | + | chr7.4:4042267-4042286 | None:intergenic | 5.0% |
| !!! | TAAATTGTTTTTTTTTAATA+TGG | + | chr7.4:4042268-4042287 | None:intergenic | 5.0% |
| AATTCGGCTTCTGCTTTCCC+TGG | + | chr7.4:4042744-4042763 | None:intergenic | 50.0% | |
| AGCAGAAGCCGAATTTGCCA+AGG | - | chr7.4:4042749-4042768 | MS.gene072516:intron | 50.0% | |
| AGGAGTAGAGCACAGAACAG+TGG | - | chr7.4:4041366-4041385 | MS.gene072516:CDS | 50.0% | |
| ATACAAAGCCCCTCCCTTCT+TGG | - | chr7.4:4042871-4042890 | MS.gene072516:intron | 50.0% | |
| GCAGAAGCCGAATTTGCCAA+GGG | - | chr7.4:4042750-4042769 | MS.gene072516:intron | 50.0% | |
| GCGAAGCAATACATCGAGAG+TGG | - | chr7.4:4043734-4043753 | MS.gene072516:CDS | 50.0% | |
| GGCACTTGAACCATGGACAA+GGG | + | chr7.4:4043035-4043054 | None:intergenic | 50.0% | |
| TCGCCTGTGATGAACTTCAC+TGG | + | chr7.4:4043686-4043705 | None:intergenic | 50.0% | |
| TGGCACTTGAACCATGGACA+AGG | + | chr7.4:4043036-4043055 | None:intergenic | 50.0% | |
| TGGGCTACCCTTGGCAAATT+CGG | + | chr7.4:4042760-4042779 | None:intergenic | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | + | chr7.4:4042883-4042902 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.4:4041665-4041684 | MS.gene072516:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.4:4041661-4041680 | MS.gene072516:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.4:4041522-4041541 | None:intergenic | 50.0% |
| !! | CGCCAAGAGTACCAGATATC+AGG | + | chr7.4:4041466-4041485 | None:intergenic | 50.0% |
| ATTGGGAGCTCACAGCAGCA+TGG | - | chr7.4:4043639-4043658 | MS.gene072516:CDS | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | + | chr7.4:4041654-4041673 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | + | chr7.4:4042884-4042903 | None:intergenic | 55.0% | |
| GAAAAGTCGGGGTTCAGTGG+TGG | - | chr7.4:4042933-4042952 | MS.gene072516:intron | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.4:4041529-4041548 | MS.gene072516:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.4:4041523-4041542 | MS.gene072516:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.4:4041535-4041554 | None:intergenic | 55.0% | |
| TGTGAGAGCCAAGAAGGGAG+GGG | + | chr7.4:4042882-4042901 | None:intergenic | 55.0% | |
| !! | CACAAGTTCTGGGCTACCCT+TGG | + | chr7.4:4042769-4042788 | None:intergenic | 55.0% |
| ATTGCGGCTCTCGGCTCTCT+CGG | - | chr7.4:4041493-4041512 | MS.gene072516:CDS | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.4:4041477-4041496 | MS.gene072516:CDS | 60.0% | |
| GAGCTCACAGCAGCATGGAC+CGG | - | chr7.4:4043644-4043663 | MS.gene072516:CDS | 60.0% | |
| AGCAGCATGGACCGGAGCCA+AGG | - | chr7.4:4043652-4043671 | MS.gene072516:CDS | 65.0% | |
| AGCCGAGAGCCGCAATCTGG+TGG | + | chr7.4:4041489-4041508 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | - | chr7.4:4041484-4041503 | MS.gene072516:CDS | 65.0% | |
| GAGAGCCGAGAGCCGCAATC+TGG | + | chr7.4:4041492-4041511 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4041361 | 4043883 | 4041361 | ID=MS.gene072516 |
| chr7.4 | mRNA | 4041361 | 4043883 | 4041361 | ID=MS.gene072516.t1;Parent=MS.gene072516 |
| chr7.4 | exon | 4043416 | 4043883 | 4043416 | ID=MS.gene072516.t1.exon1;Parent=MS.gene072516.t1 |
| chr7.4 | CDS | 4043416 | 4043883 | 4043416 | ID=cds.MS.gene072516.t1;Parent=MS.gene072516.t1 |
| chr7.4 | exon | 4042262 | 4042506 | 4042262 | ID=MS.gene072516.t1.exon2;Parent=MS.gene072516.t1 |
| chr7.4 | CDS | 4042262 | 4042506 | 4042262 | ID=cds.MS.gene072516.t1;Parent=MS.gene072516.t1 |
| chr7.4 | exon | 4041361 | 4041607 | 4041361 | ID=MS.gene072516.t1.exon3;Parent=MS.gene072516.t1 |
| chr7.4 | CDS | 4041361 | 4041607 | 4041361 | ID=cds.MS.gene072516.t1;Parent=MS.gene072516.t1 |
| Gene Sequence |
| Protein sequence |
