Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050923.t1 | XP_003626240.2 | 85.9 | 319 | 45 | 0 | 1 | 319 | 1 | 319 | 6.50E-167 | 596.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050923.t1 | I6YGS0 | 38.4 | 320 | 177 | 9 | 7 | 316 | 7 | 316 | 5.6e-58 | 226.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050923.t1 | G7KXL9 | 85.9 | 319 | 45 | 0 | 1 | 319 | 1 | 319 | 4.7e-167 | 596.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050923 | MS.gene072516 | 0.892204 | 1.97E-74 | -1.69E-46 |
| MS.gene050923 | MS.gene37319 | 0.88929 | 2.77E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035369 | MS.gene050923 | PPI |
| MS.gene76453 | MS.gene050923 | PPI |
| MS.gene025707 | MS.gene050923 | PPI |
| MS.gene050923 | MS.gene035371 | PPI |
| MS.gene035373 | MS.gene050923 | PPI |
| MS.gene050923 | MS.gene07001 | PPI |
| MS.gene035367 | MS.gene050923 | PPI |
| MS.gene050923 | MS.gene066361 | PPI |
| MS.gene050923 | MS.gene071500 | PPI |
| MS.gene77823 | MS.gene050923 | PPI |
| MS.gene050923 | MS.gene041604 | PPI |
| MS.gene071504 | MS.gene050923 | PPI |
| MS.gene012063 | MS.gene050923 | PPI |
| MS.gene050923 | MS.gene22955 | PPI |
| MS.gene071502 | MS.gene050923 | PPI |
| MS.gene066360 | MS.gene050923 | PPI |
| MS.gene89620 | MS.gene050923 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050923.t1 | MTR_7g112960 | 85.893 | 319 | 45 | 0 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| MS.gene050923.t1 | MTR_7g112963 | 84.326 | 319 | 50 | 0 | 1 | 319 | 1 | 319 | 0.0 | 580 |
| MS.gene050923.t1 | MTR_7g112970 | 85.580 | 319 | 43 | 1 | 1 | 319 | 1 | 316 | 0.0 | 579 |
| MS.gene050923.t1 | MTR_7g113010 | 95.374 | 281 | 13 | 0 | 1 | 281 | 1 | 281 | 0.0 | 565 |
| MS.gene050923.t1 | MTR_7g113020 | 75.078 | 321 | 76 | 2 | 1 | 319 | 1 | 319 | 0.0 | 512 |
| MS.gene050923.t1 | MTR_7g113050 | 73.832 | 321 | 80 | 2 | 1 | 319 | 1 | 319 | 0.0 | 507 |
| MS.gene050923.t1 | MTR_7g113030 | 72.727 | 319 | 87 | 0 | 1 | 319 | 1 | 319 | 0.0 | 505 |
| MS.gene050923.t1 | MTR_7g112615 | 73.209 | 321 | 82 | 2 | 1 | 319 | 1 | 319 | 2.02e-180 | 501 |
| MS.gene050923.t1 | MTR_7g112620 | 71.651 | 321 | 87 | 2 | 1 | 319 | 1 | 319 | 1.62e-178 | 496 |
| MS.gene050923.t1 | MTR_4g005160 | 65.846 | 325 | 102 | 5 | 1 | 319 | 1 | 322 | 8.51e-158 | 444 |
| MS.gene050923.t1 | MTR_4g120240 | 59.813 | 321 | 125 | 3 | 1 | 319 | 37 | 355 | 1.14e-144 | 412 |
| MS.gene050923.t1 | MTR_7g108825 | 60.000 | 320 | 124 | 3 | 1 | 319 | 1 | 317 | 5.53e-142 | 404 |
| MS.gene050923.t1 | MTR_7g113050 | 73.333 | 240 | 60 | 2 | 1 | 238 | 1 | 238 | 5.22e-132 | 375 |
| MS.gene050923.t1 | MTR_7g112615 | 72.500 | 240 | 62 | 2 | 1 | 238 | 1 | 238 | 1.83e-130 | 371 |
| MS.gene050923.t1 | MTR_8g076680 | 47.516 | 322 | 157 | 5 | 1 | 318 | 3 | 316 | 5.02e-105 | 310 |
| MS.gene050923.t1 | MTR_7g108825 | 60.669 | 239 | 90 | 3 | 1 | 238 | 1 | 236 | 5.52e-102 | 299 |
| MS.gene050923.t1 | MTR_7g112615 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 4.95e-98 | 287 |
| MS.gene050923.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 2.26e-85 | 254 |
| MS.gene050923.t1 | MTR_8g076680 | 47.934 | 242 | 116 | 3 | 1 | 238 | 3 | 238 | 2.62e-80 | 244 |
| MS.gene050923.t1 | MTR_2g090240 | 38.509 | 322 | 182 | 7 | 1 | 318 | 1 | 310 | 2.12e-67 | 213 |
| MS.gene050923.t1 | MTR_2g090245 | 38.820 | 322 | 181 | 8 | 1 | 318 | 1 | 310 | 9.41e-67 | 212 |
| MS.gene050923.t1 | MTR_4g089060 | 35.714 | 322 | 192 | 6 | 1 | 319 | 1 | 310 | 1.89e-66 | 211 |
| MS.gene050923.t1 | MTR_4g089040 | 36.025 | 322 | 191 | 6 | 1 | 319 | 1 | 310 | 4.00e-65 | 207 |
| MS.gene050923.t1 | MTR_7g112910 | 46.215 | 251 | 76 | 7 | 72 | 319 | 1 | 195 | 6.35e-63 | 198 |
| MS.gene050923.t1 | MTR_4g089060 | 33.238 | 349 | 191 | 7 | 1 | 319 | 1 | 337 | 2.04e-61 | 199 |
| MS.gene050923.t1 | MTR_4g089060 | 37.339 | 233 | 137 | 3 | 1 | 231 | 1 | 226 | 1.17e-55 | 181 |
| MS.gene050923.t1 | MTR_3g024250 | 76.415 | 106 | 25 | 0 | 47 | 152 | 2 | 107 | 2.63e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050923.t1 | AT3G05600 | 62.346 | 324 | 115 | 4 | 1 | 318 | 1 | 323 | 6.02e-153 | 432 |
| MS.gene050923.t1 | AT4G02340 | 59.375 | 320 | 125 | 3 | 1 | 319 | 1 | 316 | 1.13e-142 | 405 |
| MS.gene050923.t1 | AT4G15960 | 53.231 | 325 | 145 | 3 | 1 | 319 | 51 | 374 | 1.47e-127 | 369 |
| MS.gene050923.t1 | AT2G26740 | 56.522 | 322 | 133 | 4 | 4 | 319 | 1 | 321 | 2.18e-122 | 354 |
| MS.gene050923.t1 | AT2G26750 | 55.452 | 321 | 137 | 4 | 4 | 319 | 1 | 320 | 6.52e-119 | 345 |
| MS.gene050923.t1 | AT3G05600 | 64.344 | 244 | 80 | 4 | 1 | 238 | 1 | 243 | 2.30e-115 | 333 |
| MS.gene050923.t1 | AT4G15955 | 50.154 | 325 | 126 | 5 | 5 | 319 | 6 | 304 | 3.37e-110 | 322 |
| MS.gene050923.t1 | AT3G51000 | 49.686 | 318 | 153 | 6 | 4 | 318 | 5 | 318 | 4.61e-108 | 318 |
| MS.gene050923.t1 | AT4G15955 | 61.850 | 173 | 56 | 2 | 5 | 167 | 6 | 178 | 2.14e-74 | 227 |
| MS.gene050923.t1 | AT4G15955 | 61.212 | 165 | 54 | 2 | 5 | 159 | 6 | 170 | 1.24e-69 | 214 |
Find 93 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTACAGGTCGGAATTC+TGG | 0.183747 | 7.1:-3487199 | MS.gene050923:CDS |
| CCTTCTTTGGGTAGGATTAA+TGG | 0.188302 | 7.1:+3487175 | None:intergenic |
| ATAATCACTTCCTCCAAATT+TGG | 0.201843 | 7.1:+3486221 | None:intergenic |
| TAAGAAAGATGTGCCAAATT+TGG | 0.214008 | 7.1:-3486234 | MS.gene050923:CDS |
| GATATAGTTTATGCTTCTTT+TGG | 0.237327 | 7.1:-3486287 | MS.gene050923:CDS |
| ATGAGATAACAAGCCTTCTT+TGG | 0.249562 | 7.1:+3487162 | None:intergenic |
| CAACTTCCTCAGCAGCTTCT+TGG | 0.258128 | 7.1:+3486171 | None:intergenic |
| CCATCAACAGGTTTCACTTT+GGG | 0.262116 | 7.1:+3488238 | None:intergenic |
| ATACAAAGCCCCTCCCTTCT+TGG | 0.294620 | 7.1:-3487126 | MS.gene050923:CDS |
| GGTTTCACTTTGGGGTTTCT+TGG | 0.301325 | 7.1:+3488247 | None:intergenic |
| GTGATCAAGGCTATGCTTAC+AGG | 0.301645 | 7.1:-3487211 | MS.gene050923:CDS |
| TTTCCTTGTGGCTCATGATT+GGG | 0.323649 | 7.1:-3488350 | MS.gene050923:CDS |
| GCTTCTAAATTTGAAAAGTC+GGG | 0.325588 | 7.1:-3487076 | MS.gene050923:CDS |
| CATGAGCCACAAGGAAAATT+TGG | 0.330260 | 7.1:+3488356 | None:intergenic |
| GAAGTTCATCACAGGCGATT+TGG | 0.348503 | 7.1:-3486309 | MS.gene050923:CDS |
| TGCTTACAGGTCGGAATTCT+GGG | 0.353613 | 7.1:-3487198 | MS.gene050923:CDS |
| TGAGATTTCTATAGTAGTTA+AGG | 0.359150 | 7.1:+3487041 | None:intergenic |
| CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 7.1:-3488337 | MS.gene050923:CDS |
| GATGGCATGCAAGCTTTGTT+TGG | 0.377529 | 7.1:-3488220 | MS.gene050923:CDS |
| CTGTTATGTTCATAGGAATT+GGG | 0.394679 | 7.1:-3486375 | MS.gene050923:intron |
| TTATTATATCTGCAGATTCC+AGG | 0.403584 | 7.1:-3488191 | MS.gene050923:intron |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.1:+3488466 | None:intergenic |
| ACATAAGCCTTGACTTTCTC+AGG | 0.407263 | 7.1:+3488292 | None:intergenic |
| CGCCAAGAGTACCAGATATC+AGG | 0.407327 | 7.1:+3488535 | None:intergenic |
| TTCCTGATATCTGGTACTCT+TGG | 0.411858 | 7.1:-3488537 | MS.gene050923:CDS |
| AATTCGGCTTCTGCTTTCCC+TGG | 0.413011 | 7.1:+3487256 | None:intergenic |
| ATAGCCTTGATCACAAGTTC+TGG | 0.414013 | 7.1:+3487220 | None:intergenic |
| CCCAAAGTGAAACCTGTTGA+TGG | 0.418758 | 7.1:-3488238 | MS.gene050923:CDS |
| TGAGATAACAAGCCTTCTTT+GGG | 0.420102 | 7.1:+3487163 | None:intergenic |
| CGCCACCAGATTGCAGCTCT+CGG | 0.421596 | 7.1:-3488514 | MS.gene050923:CDS |
| TGGGCTACCCTTGGCAAATT+CGG | 0.422231 | 7.1:+3487240 | None:intergenic |
| GGCTTTGTATTTGAAACATC+GGG | 0.424711 | 7.1:+3487139 | None:intergenic |
| TGCTTCTAAATTTGAAAAGT+CGG | 0.427783 | 7.1:-3487077 | MS.gene050923:CDS |
| AAAGCTTGCATGCCATCAAC+AGG | 0.432275 | 7.1:+3488226 | None:intergenic |
| GCCATCAACAGGTTTCACTT+TGG | 0.465827 | 7.1:+3488237 | None:intergenic |
| CATCAACAGGTTTCACTTTG+GGG | 0.472252 | 7.1:+3488239 | None:intergenic |
| CTTCACTGGAACTTTAACCT+TGG | 0.473353 | 7.1:+3486328 | None:intergenic |
| TTTGGAGGAAGTGATTATAC+AGG | 0.473618 | 7.1:-3486216 | MS.gene050923:CDS |
| GAGAGCCGAGAGCTGCAATC+TGG | 0.480043 | 7.1:+3488509 | None:intergenic |
| CACAAGTTCTGGGCTACCCT+TGG | 0.489572 | 7.1:+3487231 | None:intergenic |
| AAAATGCATGTCGCAGAGAA+AGG | 0.491525 | 7.1:-3488595 | MS.gene050923:CDS |
| ATTGCAGCTCTCGGCTCTCT+CGG | 0.494600 | 7.1:-3488505 | MS.gene050923:CDS |
| TAGCCTTGATCACAAGTTCT+GGG | 0.495550 | 7.1:+3487221 | None:intergenic |
| GAAAGATGTGCCAAATTTGG+AGG | 0.498854 | 7.1:-3486231 | MS.gene050923:CDS |
| TCGCCTGTGATGAACTTCAC+TGG | 0.499059 | 7.1:+3486314 | None:intergenic |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.1:-3488469 | MS.gene050923:CDS |
| CAAGAAGCTGCTGAGGAAGT+TGG | 0.506670 | 7.1:-3486170 | MS.gene050923:CDS |
| CAATTCATGTGACAGGAACC+AGG | 0.511502 | 7.1:-3487274 | MS.gene050923:intron |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.512333 | 7.1:+3487112 | None:intergenic |
| CCATGAAGGAACAAAACAAC+AGG | 0.513488 | 7.1:+3488562 | None:intergenic |
| TAGCCCAGAACTTGTGATCA+AGG | 0.517411 | 7.1:-3487224 | MS.gene050923:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.518936 | 7.1:-3488349 | MS.gene050923:CDS |
| ACAGAGATGCCAACCAATGA+TGG | 0.522500 | 7.1:+3488324 | None:intergenic |
| CCATTAATCCTACCCAAAGA+AGG | 0.525729 | 7.1:-3487175 | MS.gene050923:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.1:-3488475 | MS.gene050923:CDS |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.528638 | 7.1:+3487117 | None:intergenic |
| TGTGTAGCTACTAACTGAAG+TGG | 0.546322 | 7.1:+3488432 | None:intergenic |
| GTCGCAGAGAAAGGAAAAGA+AGG | 0.549089 | 7.1:-3488586 | MS.gene050923:CDS |
| ATTGGGGTGCCATCATTGGT+TGG | 0.551746 | 7.1:-3488333 | MS.gene050923:CDS |
| ATAACAAGCCTTCTTTGGGT+AGG | 0.551798 | 7.1:+3487167 | None:intergenic |
| GGGCTTTGTATTTGAAACAT+CGG | 0.553097 | 7.1:+3487138 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.555575 | 7.1:-3488622 | MS.gene050923:CDS |
| TGTGAGAGCCAAGAAGGGAG+GGG | 0.561355 | 7.1:+3487118 | None:intergenic |
| CTTCTAAATTTGAAAAGTCG+GGG | 0.579960 | 7.1:-3487075 | MS.gene050923:CDS |
| AGCAGAAGCCGAATTTGCCA+AGG | 0.586217 | 7.1:-3487248 | MS.gene050923:CDS |
| AGCCGAGAGCTGCAATCTGG+TGG | 0.586955 | 7.1:+3488512 | None:intergenic |
| GAGCTCACAGCAGCATGGCA+CGG | 0.587193 | 7.1:-3486353 | MS.gene050923:CDS |
| TTTGAAAAGTCGGGGTTCAG+TGG | 0.587683 | 7.1:-3487067 | MS.gene050923:CDS |
| GAAAAGTCGGGGTTCAGTGG+TGG | 0.588050 | 7.1:-3487064 | MS.gene050923:CDS |
| AGCAGCATGGCACGGAGCCA+AGG | 0.590451 | 7.1:-3486345 | MS.gene050923:CDS |
| ACTAACTGAAGTGGGAGCAT+CGG | 0.592618 | 7.1:+3488441 | None:intergenic |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.599078 | 7.1:+3487116 | None:intergenic |
| GTTTCGTCCTGAGAAAGTCA+AGG | 0.602031 | 7.1:-3488299 | MS.gene050923:CDS |
| GTTGCTCTAATTGACTCACT+TGG | 0.604533 | 7.1:-3488385 | MS.gene050923:CDS |
| TTGGGGTTTCTTGGTAACAA+CGG | 0.609164 | 7.1:+3488256 | None:intergenic |
| GTTCCAGTGAAGTTCATCAC+AGG | 0.615248 | 7.1:-3486317 | MS.gene050923:CDS |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.1:+3488347 | None:intergenic |
| TAACAACCAAGAAGCTGCTG+AGG | 0.623686 | 7.1:-3486177 | MS.gene050923:CDS |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.624050 | 7.1:+3487113 | None:intergenic |
| TCTAATTGACTCACTTGGTG+TGG | 0.624858 | 7.1:-3488380 | MS.gene050923:CDS |
| AGATATCAGGAAAACCATGA+AGG | 0.624982 | 7.1:+3488548 | None:intergenic |
| AGGAGTAGAGCACAGAACAG+TGG | 0.630212 | 7.1:-3488632 | MS.gene050923:CDS |
| GTGTAGCTACTAACTGAAGT+GGG | 0.632760 | 7.1:+3488433 | None:intergenic |
| AGTGATTATACAGGAAGGTG+TGG | 0.637871 | 7.1:-3486207 | MS.gene050923:CDS |
| AATTCATGTGACAGGAACCA+GGG | 0.640650 | 7.1:-3487273 | MS.gene050923:intron |
| GAGGAAGTGATTATACAGGA+AGG | 0.643542 | 7.1:-3486212 | MS.gene050923:CDS |
| AAGCAATACATCGAGAGTGG+TGG | 0.645763 | 7.1:-3486260 | MS.gene050923:CDS |
| GCGAAGCAATACATCGAGAG+TGG | 0.652428 | 7.1:-3486263 | MS.gene050923:CDS |
| ATTGGGAGCTCACAGCAGCA+TGG | 0.659039 | 7.1:-3486358 | MS.gene050923:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.1:+3488479 | None:intergenic |
| TCAAGGCTATGCTTACAGGT+CGG | 0.686752 | 7.1:-3487207 | MS.gene050923:CDS |
| GCAGAAGCCGAATTTGCCAA+GGG | 0.692748 | 7.1:-3487247 | MS.gene050923:CDS |
| TTGGTAACAACGGAACACTG+AGG | 0.754230 | 7.1:+3488266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAATAATAAATATTT+TGG | - | chr7.1:3488028-3488047 | MS.gene050923:intron | 0.0% |
| !! | AAATGAAAAGAAATAAAAAT+AGG | + | chr7.1:3487769-3487788 | None:intergenic | 10.0% |
| !! | AATGAAAAGAAATAAAAATA+GGG | + | chr7.1:3487768-3487787 | None:intergenic | 10.0% |
| !!! | ACAAGTTTTTTAAAGTTAAA+GGG | + | chr7.1:3486914-3486933 | None:intergenic | 15.0% |
| !!! | ATAATTTGTGACAATTTTTT+TGG | - | chr7.1:3487063-3487082 | MS.gene050923:CDS | 15.0% |
| !!! | TTTTCCATTATTAATTAATC+CGG | + | chr7.1:3487389-3487408 | None:intergenic | 15.0% |
| !! | AACATGTTTGAATTTATGTT+GGG | + | chr7.1:3488259-3488278 | None:intergenic | 20.0% |
| !! | AGTGCAAATAAACATATAAA+TGG | + | chr7.1:3487832-3487851 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAAAAAGTTCAA+AGG | - | chr7.1:3486879-3486898 | MS.gene050923:intron | 20.0% |
| !! | TGTACGATCATAATATAAAA+AGG | + | chr7.1:3487861-3487880 | None:intergenic | 20.0% |
| !!! | AATAAATATTTTGGTATGTG+CGG | - | chr7.1:3488037-3488056 | MS.gene050923:intron | 20.0% |
| !!! | AATAATGCATTCACTTATTT+TGG | - | chr7.1:3487423-3487442 | MS.gene050923:intron | 20.0% |
| !!! | ATTTTCCTTTAACAAAATGT+GGG | - | chr7.1:3487187-3487206 | MS.gene050923:CDS | 20.0% |
| !!! | ATTTTGTTTATAATTGAGAC+CGG | - | chr7.1:3487367-3487386 | MS.gene050923:intron | 20.0% |
| !!! | CACAAGTTTTTTAAAGTTAA+AGG | + | chr7.1:3486915-3486934 | None:intergenic | 20.0% |
| !!! | GGTTAATTTTTACTTACATA+AGG | - | chr7.1:3486663-3486682 | MS.gene050923:intron | 20.0% |
| !!! | TATATGTTTATTTGCACTTT+TGG | - | chr7.1:3487834-3487853 | MS.gene050923:intron | 20.0% |
| !!! | TTATTTTGGAATTTACAGAT+GGG | - | chr7.1:3487437-3487456 | MS.gene050923:intron | 20.0% |
| ! | AATTCTTCTGTTATGTTCAT+AGG | - | chr7.1:3488391-3488410 | MS.gene050923:CDS | 25.0% |
| ! | AGTTACAATCTATGAAAGAT+AGG | - | chr7.1:3487091-3487110 | MS.gene050923:CDS | 25.0% |
| ! | AGTTACTTAAACAAATTCGA+AGG | + | chr7.1:3486690-3486709 | None:intergenic | 25.0% |
| ! | CAAACACATGTAAAATTATC+AGG | + | chr7.1:3486945-3486964 | None:intergenic | 25.0% |
| ! | GAACATGTTTGAATTTATGT+TGG | + | chr7.1:3488260-3488279 | None:intergenic | 25.0% |
| ! | GTTACAATCTATGAAAGATA+GGG | - | chr7.1:3487092-3487111 | MS.gene050923:CDS | 25.0% |
| ! | GTTACTTAAACAAATTCGAA+GGG | + | chr7.1:3486689-3486708 | None:intergenic | 25.0% |
| ! | TGAGATTTCTATAGTAGTTA+AGG | + | chr7.1:3487735-3487754 | None:intergenic | 25.0% |
| ! | TGCTTCTAAATTTGAAAAGT+CGG | - | chr7.1:3487696-3487715 | MS.gene050923:intron | 25.0% |
| ! | TTATTGCATAAACCAAAAGA+AGG | + | chr7.1:3486804-3486823 | None:intergenic | 25.0% |
| ! | TTCAGAAAAATACAACACTT+CGG | + | chr7.1:3488063-3488082 | None:intergenic | 25.0% |
| ! | TTGTAACGATTGAAACATAT+AGG | - | chr7.1:3487915-3487934 | MS.gene050923:intron | 25.0% |
| ! | TTTGAATTTATGTTGGGATT+TGG | + | chr7.1:3488253-3488272 | None:intergenic | 25.0% |
| ! | TTTGAGTGAACACAATAATT+TGG | - | chr7.1:3487942-3487961 | MS.gene050923:intron | 25.0% |
| !! | CATTTTCCTTTAACAAAATG+TGG | - | chr7.1:3487186-3487205 | MS.gene050923:CDS | 25.0% |
| !! | CTTGAAATGCTTTTATACAT+TGG | - | chr7.1:3486642-3486661 | MS.gene050923:intron | 25.0% |
| !! | GATATAGTTTATGCTTCTTT+TGG | - | chr7.1:3488486-3488505 | MS.gene050923:CDS | 25.0% |
| !!! | ATTCTTTTTTGGATATGAAG+GGG | - | chr7.1:3487319-3487338 | MS.gene050923:intron | 25.0% |
| !!! | CTTATTTTGGAATTTACAGA+TGG | - | chr7.1:3487436-3487455 | MS.gene050923:intron | 25.0% |
| !!! | GATTCTTTTTTGGATATGAA+GGG | - | chr7.1:3487318-3487337 | MS.gene050923:intron | 25.0% |
| !!! | GTTTAAACGTGATTCTTTTT+TGG | - | chr7.1:3487308-3487327 | MS.gene050923:intron | 25.0% |
| !!! | TGATTCTTTTTTGGATATGA+AGG | - | chr7.1:3487317-3487336 | MS.gene050923:intron | 25.0% |
| AAATGCAAGCTTTCAATTTG+TGG | - | chr7.1:3486710-3486729 | MS.gene050923:intron | 30.0% | |
| AACATGTTCGGATTTATGTT+GGG | + | chr7.1:3488299-3488318 | None:intergenic | 30.0% | |
| AATATTCCAATTCATGTGAC+AGG | - | chr7.1:3487492-3487511 | MS.gene050923:intron | 30.0% | |
| AATTTGTGGTTGTGTTAGAA+TGG | - | chr7.1:3486724-3486743 | MS.gene050923:intron | 30.0% | |
| ATAATCACTTCCTCCAAATT+TGG | + | chr7.1:3488555-3488574 | None:intergenic | 30.0% | |
| ATTTGTGGTTGTGTTAGAAT+GGG | - | chr7.1:3486725-3486744 | MS.gene050923:intron | 30.0% | |
| CAATCTCACATATTTAGAAG+AGG | - | chr7.1:3487966-3487985 | MS.gene050923:intron | 30.0% | |
| CTCTCTCAATATGATGTTAA+GGG | - | chr7.1:3487154-3487173 | MS.gene050923:CDS | 30.0% | |
| CTGTTATGTTCATAGGAATT+GGG | - | chr7.1:3488398-3488417 | MS.gene050923:CDS | 30.0% | |
| CTTCTAAATTTGAAAAGTCG+GGG | - | chr7.1:3487698-3487717 | MS.gene050923:intron | 30.0% | |
| GAGACCGGATTAATTAATAA+TGG | - | chr7.1:3487382-3487401 | MS.gene050923:intron | 30.0% | |
| GCTTCTAAATTTGAAAAGTC+GGG | - | chr7.1:3487697-3487716 | MS.gene050923:intron | 30.0% | |
| TAAGAAAGATGTGCCAAATT+TGG | - | chr7.1:3488539-3488558 | MS.gene050923:CDS | 30.0% | |
| TATAAATGGCACTTGAATCA+TGG | + | chr7.1:3487818-3487837 | None:intergenic | 30.0% | |
| TCAAAATACAAAAACGAACC+TGG | + | chr7.1:3486603-3486622 | None:intergenic | 30.0% | |
| TCTCTCTCAATATGATGTTA+AGG | - | chr7.1:3487153-3487172 | MS.gene050923:CDS | 30.0% | |
| TCTGTTATGTTCATAGGAAT+TGG | - | chr7.1:3488397-3488416 | MS.gene050923:CDS | 30.0% | |
| TGTCACATGAATTGGAATAT+TGG | + | chr7.1:3487493-3487512 | None:intergenic | 30.0% | |
| TTAACCACATCAAAATAGTC+AGG | + | chr7.1:3488204-3488223 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | - | chr7.1:3486582-3486601 | MS.gene050923:intron | 30.0% | |
| ! | CAATACCCACATTTTGTTAA+AGG | + | chr7.1:3487195-3487214 | None:intergenic | 30.0% |
| ! | TACACAATTTTGCATTTGGT+TGG | - | chr7.1:3486358-3486377 | MS.gene050923:CDS | 30.0% |
| ! | TAGCTACACAATTTTGCATT+TGG | - | chr7.1:3486354-3486373 | MS.gene050923:CDS | 30.0% |
| !!! | AAAAAGTTCAAAGGCACTTT+TGG | - | chr7.1:3486888-3486907 | MS.gene050923:intron | 30.0% |
| !!! | TTCTTTTTTGGATATGAAGG+GGG | - | chr7.1:3487320-3487339 | MS.gene050923:intron | 30.0% |
| AAATCCGAACATGTTCATAG+AGG | - | chr7.1:3488304-3488323 | MS.gene050923:CDS | 35.0% | |
| AGATATCAGGAAAACCATGA+AGG | + | chr7.1:3486228-3486247 | None:intergenic | 35.0% | |
| AGTTCCTCTATGAACATGTT+CGG | + | chr7.1:3488311-3488330 | None:intergenic | 35.0% | |
| ATGAGATAACAAGCCTTCTT+TGG | + | chr7.1:3487614-3487633 | None:intergenic | 35.0% | |
| GAACATGTTCGGATTTATGT+TGG | + | chr7.1:3488300-3488319 | None:intergenic | 35.0% | |
| GAGAGAGAGAAAATTAAGAG+TGG | + | chr7.1:3487141-3487160 | None:intergenic | 35.0% | |
| GATTGTTCAGACTTCAAACT+TGG | - | chr7.1:3488116-3488135 | MS.gene050923:intron | 35.0% | |
| TCTTACTAACAACTGTTCTG+AGG | + | chr7.1:3487020-3487039 | None:intergenic | 35.0% | |
| TGAGATAACAAGCCTTCTTT+GGG | + | chr7.1:3487613-3487632 | None:intergenic | 35.0% | |
| TTCGGATTTATGTTGGGATT+TGG | + | chr7.1:3488293-3488312 | None:intergenic | 35.0% | |
| TTGCATAAACCAAAAGAAGG+AGG | + | chr7.1:3486801-3486820 | None:intergenic | 35.0% | |
| TTTGGAGGAAGTGATTATAC+AGG | - | chr7.1:3488557-3488576 | MS.gene050923:CDS | 35.0% | |
| ! | ACACTTTTACCTCCTTCTTT+TGG | - | chr7.1:3486789-3486808 | MS.gene050923:intron | 35.0% |
| ! | GGCTTTGTATTTGAAACATC+GGG | + | chr7.1:3487637-3487656 | None:intergenic | 35.0% |
| ! | GGGCTTTGTATTTGAAACAT+CGG | + | chr7.1:3487638-3487657 | None:intergenic | 35.0% |
| ! | TATTGTTGTTACTCATGCTG+AGG | - | chr7.1:3487210-3487229 | MS.gene050923:CDS | 35.0% |
| ! | TTCATGGTTTTCCTGATATC+TGG | - | chr7.1:3486227-3486246 | MS.gene050923:CDS | 35.0% |
| !! | AGTCAGGTTGGATTAAGTTT+GGG | + | chr7.1:3488188-3488207 | None:intergenic | 35.0% |
| !! | TAGTCAGGTTGGATTAAGTT+TGG | + | chr7.1:3488189-3488208 | None:intergenic | 35.0% |
| AAAATGCATGTCGCAGAGAA+AGG | - | chr7.1:3486178-3486197 | MS.gene050923:CDS | 40.0% | |
| AATTCATGTGACAGGAACCA+GGG | - | chr7.1:3487500-3487519 | MS.gene050923:intron | 40.0% | |
| ACATAAGCCTTGACTTTCTC+AGG | + | chr7.1:3486484-3486503 | None:intergenic | 40.0% | |
| AGTGATTATACAGGAAGGTG+TGG | - | chr7.1:3488566-3488585 | MS.gene050923:CDS | 40.0% | |
| ATAACAAGCCTTCTTTGGGT+AGG | + | chr7.1:3487609-3487628 | None:intergenic | 40.0% | |
| CATCAACAGGTTTCACTTTG+GGG | + | chr7.1:3486537-3486556 | None:intergenic | 40.0% | |
| CATGAGCCACAAGGAAAATT+TGG | + | chr7.1:3486420-3486439 | None:intergenic | 40.0% | |
| CCACATCAAAATAGTCAGGT+TGG | + | chr7.1:3488200-3488219 | None:intergenic | 40.0% | |
| CCATCAACAGGTTTCACTTT+GGG | + | chr7.1:3486538-3486557 | None:intergenic | 40.0% | |
| CCATGAAGGAACAAAACAAC+AGG | + | chr7.1:3486214-3486233 | None:intergenic | 40.0% | |
| CCATTAATCCTACCCAAAGA+AGG | - | chr7.1:3487598-3487617 | MS.gene050923:intron | 40.0% | |
| CCTTCTTTGGGTAGGATTAA+TGG | + | chr7.1:3487601-3487620 | None:intergenic | 40.0% | |
| CTTCACTGGAACTTTAACCT+TGG | + | chr7.1:3488448-3488467 | None:intergenic | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.1:3488542-3488561 | MS.gene050923:CDS | 40.0% | |
| GAGGAAGTGATTATACAGGA+AGG | - | chr7.1:3488561-3488580 | MS.gene050923:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGT+GGG | + | chr7.1:3486343-3486362 | None:intergenic | 40.0% | |
| TGCTGAGGTAACACTAATCA+AGG | - | chr7.1:3487225-3487244 | MS.gene050923:CDS | 40.0% | |
| TGTGTAGCTACTAACTGAAG+TGG | + | chr7.1:3486344-3486363 | None:intergenic | 40.0% | |
| TTCCTGATATCTGGTACTCT+TGG | - | chr7.1:3486236-3486255 | MS.gene050923:CDS | 40.0% | |
| TTTCCTTGTGGCTCATGATT+GGG | - | chr7.1:3486423-3486442 | MS.gene050923:intron | 40.0% | |
| ! | ATAGCCTTGATCACAAGTTC+TGG | + | chr7.1:3487556-3487575 | None:intergenic | 40.0% |
| ! | GTTGCTCTAATTGACTCACT+TGG | - | chr7.1:3486388-3486407 | MS.gene050923:intron | 40.0% |
| ! | TAGCCTTGATCACAAGTTCT+GGG | + | chr7.1:3487555-3487574 | None:intergenic | 40.0% |
| ! | TCTAATTGACTCACTTGGTG+TGG | - | chr7.1:3486393-3486412 | MS.gene050923:intron | 40.0% |
| ! | TGTGGACCAAATTTTCCTTG+TGG | - | chr7.1:3486411-3486430 | MS.gene050923:intron | 40.0% |
| ! | TTGGGGTTTCTTGGTAACAA+CGG | + | chr7.1:3486520-3486539 | None:intergenic | 40.0% |
| ! | TTTTCCTTGTGGCTCATGAT+TGG | - | chr7.1:3486422-3486441 | MS.gene050923:intron | 40.0% |
| !!! | CCAACCTGACTATTTTGATG+TGG | - | chr7.1:3488197-3488216 | MS.gene050923:CDS | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+TGG | - | chr7.1:3486211-3486230 | MS.gene050923:CDS | 40.0% |
| AAAGCTTGCATGCCATCAAC+AGG | + | chr7.1:3486550-3486569 | None:intergenic | 45.0% | |
| AAGCAATACATCGAGAGTGG+TGG | - | chr7.1:3488513-3488532 | MS.gene050923:CDS | 45.0% | |
| ACAGAGATGCCAACCAATGA+TGG | + | chr7.1:3486452-3486471 | None:intergenic | 45.0% | |
| ATGCTTACAGGTCGGAATTC+TGG | - | chr7.1:3487574-3487593 | MS.gene050923:intron | 45.0% | |
| CAATTCATGTGACAGGAACC+AGG | - | chr7.1:3487499-3487518 | MS.gene050923:intron | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.1:3486151-3486170 | MS.gene050923:CDS | 45.0% | |
| CCCAAAGTGAAACCTGTTGA+TGG | - | chr7.1:3486535-3486554 | MS.gene050923:intron | 45.0% | |
| CTGGTTCCTGTCACATGAAT+TGG | + | chr7.1:3487501-3487520 | None:intergenic | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | + | chr7.1:3487663-3487682 | None:intergenic | 45.0% | |
| GAAGTTCATCACAGGCGATT+TGG | - | chr7.1:3488464-3488483 | MS.gene050923:CDS | 45.0% | |
| GCCATCAACAGGTTTCACTT+TGG | + | chr7.1:3486539-3486558 | None:intergenic | 45.0% | |
| GGCACTTGAATCATGGACAA+GGG | + | chr7.1:3487811-3487830 | None:intergenic | 45.0% | |
| GTCGCAGAGAAAGGAAAAGA+AGG | - | chr7.1:3486187-3486206 | MS.gene050923:CDS | 45.0% | |
| GTGATCAAGGCTATGCTTAC+AGG | - | chr7.1:3487562-3487581 | MS.gene050923:intron | 45.0% | |
| GTTCCAGTGAAGTTCATCAC+AGG | - | chr7.1:3488456-3488475 | MS.gene050923:CDS | 45.0% | |
| GTTTCGTCCTGAGAAAGTCA+AGG | - | chr7.1:3486474-3486493 | MS.gene050923:intron | 45.0% | |
| TAACAACCAAGAAGCTGCTG+AGG | - | chr7.1:3488596-3488615 | MS.gene050923:CDS | 45.0% | |
| TAGCCCAGAACTTGTGATCA+AGG | - | chr7.1:3487549-3487568 | MS.gene050923:intron | 45.0% | |
| TCAAGGCTATGCTTACAGGT+CGG | - | chr7.1:3487566-3487585 | MS.gene050923:intron | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | + | chr7.1:3487664-3487683 | None:intergenic | 45.0% | |
| TGCTTACAGGTCGGAATTCT+GGG | - | chr7.1:3487575-3487594 | MS.gene050923:intron | 45.0% | |
| TGGCACTTGAATCATGGACA+AGG | + | chr7.1:3487812-3487831 | None:intergenic | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | - | chr7.1:3486424-3486443 | MS.gene050923:intron | 45.0% | |
| TTTGAAAAGTCGGGGTTCAG+TGG | - | chr7.1:3487706-3487725 | MS.gene050923:intron | 45.0% | |
| ! | ACTAACTGAAGTGGGAGCAT+CGG | + | chr7.1:3486335-3486354 | None:intergenic | 45.0% |
| ! | CAGGTTGGATTAAGTTTGGG+TGG | + | chr7.1:3488185-3488204 | None:intergenic | 45.0% |
| ! | TTGGTAACAACGGAACACTG+AGG | + | chr7.1:3486510-3486529 | None:intergenic | 45.0% |
| !! | GATGGCATGCAAGCTTTGTT+TGG | - | chr7.1:3486553-3486572 | MS.gene050923:intron | 45.0% |
| !! | GGATATGAAGGGGGTATTTG+AGG | - | chr7.1:3487329-3487348 | MS.gene050923:intron | 45.0% |
| !! | GGTTTCACTTTGGGGTTTCT+TGG | + | chr7.1:3486529-3486548 | None:intergenic | 45.0% |
| !!! | AAATTGTTTTTTTTTAATAT+GGG | + | chr7.1:3487043-3487062 | None:intergenic | 5.0% |
| !!! | TAAATTGTTTTTTTTTAATA+TGG | + | chr7.1:3487044-3487063 | None:intergenic | 5.0% |
| AATTCGGCTTCTGCTTTCCC+TGG | + | chr7.1:3487520-3487539 | None:intergenic | 50.0% | |
| AGCAGAAGCCGAATTTGCCA+AGG | - | chr7.1:3487525-3487544 | MS.gene050923:intron | 50.0% | |
| AGGAGTAGAGCACAGAACAG+TGG | - | chr7.1:3486141-3486160 | MS.gene050923:CDS | 50.0% | |
| ATACAAAGCCCCTCCCTTCT+TGG | - | chr7.1:3487647-3487666 | MS.gene050923:intron | 50.0% | |
| CAACTTCCTCAGCAGCTTCT+TGG | + | chr7.1:3488605-3488624 | None:intergenic | 50.0% | |
| CAAGAAGCTGCTGAGGAAGT+TGG | - | chr7.1:3488603-3488622 | MS.gene050923:CDS | 50.0% | |
| GCAGAAGCCGAATTTGCCAA+GGG | - | chr7.1:3487526-3487545 | MS.gene050923:intron | 50.0% | |
| GCGAAGCAATACATCGAGAG+TGG | - | chr7.1:3488510-3488529 | MS.gene050923:CDS | 50.0% | |
| TCGCCTGTGATGAACTTCAC+TGG | + | chr7.1:3488462-3488481 | None:intergenic | 50.0% | |
| TGGGCTACCCTTGGCAAATT+CGG | + | chr7.1:3487536-3487555 | None:intergenic | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | + | chr7.1:3487659-3487678 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.1:3486440-3486459 | MS.gene050923:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.1:3486436-3486455 | MS.gene050923:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.1:3486297-3486316 | None:intergenic | 50.0% |
| !! | CGCCAAGAGTACCAGATATC+AGG | + | chr7.1:3486241-3486260 | None:intergenic | 50.0% |
| ATTGCAGCTCTCGGCTCTCT+CGG | - | chr7.1:3486268-3486287 | MS.gene050923:CDS | 55.0% | |
| ATTGGGAGCTCACAGCAGCA+TGG | - | chr7.1:3488415-3488434 | MS.gene050923:CDS | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | + | chr7.1:3486429-3486448 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | + | chr7.1:3487660-3487679 | None:intergenic | 55.0% | |
| GAAAAGTCGGGGTTCAGTGG+TGG | - | chr7.1:3487709-3487728 | MS.gene050923:intron | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.1:3486304-3486323 | MS.gene050923:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.1:3486298-3486317 | MS.gene050923:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.1:3486310-3486329 | None:intergenic | 55.0% | |
| TGTGAGAGCCAAGAAGGGAG+GGG | + | chr7.1:3487658-3487677 | None:intergenic | 55.0% | |
| !! | CACAAGTTCTGGGCTACCCT+TGG | + | chr7.1:3487545-3487564 | None:intergenic | 55.0% |
| AGCCGAGAGCTGCAATCTGG+TGG | + | chr7.1:3486264-3486283 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCAGCTCT+CGG | - | chr7.1:3486259-3486278 | MS.gene050923:CDS | 60.0% | |
| GAGAGCCGAGAGCTGCAATC+TGG | + | chr7.1:3486267-3486286 | None:intergenic | 60.0% | |
| GAGCTCACAGCAGCATGGCA+CGG | - | chr7.1:3488420-3488439 | MS.gene050923:CDS | 60.0% | |
| AGCAGCATGGCACGGAGCCA+AGG | - | chr7.1:3488428-3488447 | MS.gene050923:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3486136 | 3488659 | 3486136 | ID=MS.gene050923 |
| chr7.1 | mRNA | 3486136 | 3488659 | 3486136 | ID=MS.gene050923.t1;Parent=MS.gene050923 |
| chr7.1 | exon | 3488192 | 3488659 | 3488192 | ID=MS.gene050923.t1.exon1;Parent=MS.gene050923.t1 |
| chr7.1 | CDS | 3488192 | 3488659 | 3488192 | ID=cds.MS.gene050923.t1;Parent=MS.gene050923.t1 |
| chr7.1 | exon | 3487037 | 3487281 | 3487037 | ID=MS.gene050923.t1.exon2;Parent=MS.gene050923.t1 |
| chr7.1 | CDS | 3487037 | 3487281 | 3487037 | ID=cds.MS.gene050923.t1;Parent=MS.gene050923.t1 |
| chr7.1 | exon | 3486136 | 3486382 | 3486136 | ID=MS.gene050923.t1.exon3;Parent=MS.gene050923.t1 |
| chr7.1 | CDS | 3486136 | 3486382 | 3486136 | ID=cds.MS.gene050923.t1;Parent=MS.gene050923.t1 |
| Gene Sequence |
| Protein sequence |
