Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072520.t1 | RHN49252.1 | 96.2 | 319 | 12 | 0 | 1 | 319 | 31 | 349 | 3.40E-184 | 654.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072520.t1 | I6YGS0 | 34.5 | 319 | 191 | 6 | 7 | 316 | 7 | 316 | 3.2e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072520.t1 | A2Q324 | 96.2 | 319 | 12 | 0 | 1 | 319 | 1 | 319 | 2.5e-184 | 654.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050928 | MS.gene072520 | 0.953447 | 2.69E-111 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071504 | MS.gene072520 | PPI |
| MS.gene012063 | MS.gene072520 | PPI |
| MS.gene066360 | MS.gene072520 | PPI |
| MS.gene89620 | MS.gene072520 | PPI |
| MS.gene066361 | MS.gene072520 | PPI |
| MS.gene035369 | MS.gene072520 | PPI |
| MS.gene071500 | MS.gene072520 | PPI |
| MS.gene76453 | MS.gene072520 | PPI |
| MS.gene025707 | MS.gene072520 | PPI |
| MS.gene035373 | MS.gene072520 | PPI |
| MS.gene22955 | MS.gene072520 | PPI |
| MS.gene035371 | MS.gene072520 | PPI |
| MS.gene035367 | MS.gene072520 | PPI |
| MS.gene041604 | MS.gene072520 | PPI |
| MS.gene071502 | MS.gene072520 | PPI |
| MS.gene77823 | MS.gene072520 | PPI |
| MS.gene07001 | MS.gene072520 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072520.t1 | MTR_7g113050 | 96.238 | 319 | 12 | 0 | 1 | 319 | 1 | 319 | 0.0 | 645 |
| MS.gene072520.t1 | MTR_7g113030 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 634 |
| MS.gene072520.t1 | MTR_7g112615 | 92.790 | 319 | 23 | 0 | 1 | 319 | 1 | 319 | 0.0 | 623 |
| MS.gene072520.t1 | MTR_7g112620 | 90.909 | 319 | 29 | 0 | 1 | 319 | 1 | 319 | 0.0 | 612 |
| MS.gene072520.t1 | MTR_7g113020 | 88.088 | 319 | 38 | 0 | 1 | 319 | 1 | 319 | 0.0 | 601 |
| MS.gene072520.t1 | MTR_7g112960 | 76.636 | 321 | 71 | 2 | 1 | 319 | 1 | 319 | 0.0 | 521 |
| MS.gene072520.t1 | MTR_7g112963 | 76.636 | 321 | 71 | 2 | 1 | 319 | 1 | 319 | 0.0 | 518 |
| MS.gene072520.t1 | MTR_7g112970 | 75.235 | 319 | 76 | 2 | 1 | 319 | 1 | 316 | 0.0 | 511 |
| MS.gene072520.t1 | MTR_4g005160 | 73.065 | 323 | 82 | 3 | 1 | 319 | 1 | 322 | 0.0 | 508 |
| MS.gene072520.t1 | MTR_7g113050 | 95.378 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 8.14e-174 | 481 |
| MS.gene072520.t1 | MTR_7g112615 | 92.857 | 238 | 17 | 0 | 1 | 238 | 1 | 238 | 1.69e-168 | 468 |
| MS.gene072520.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 6.98e-151 | 436 |
| MS.gene072520.t1 | MTR_4g120240 | 60.748 | 321 | 122 | 3 | 1 | 319 | 37 | 355 | 6.28e-146 | 415 |
| MS.gene072520.t1 | MTR_7g108825 | 61.755 | 319 | 120 | 2 | 1 | 319 | 1 | 317 | 3.99e-144 | 409 |
| MS.gene072520.t1 | MTR_7g112615 | 94.340 | 159 | 9 | 0 | 1 | 159 | 1 | 159 | 1.75e-109 | 316 |
| MS.gene072520.t1 | MTR_8g076680 | 48.589 | 319 | 160 | 3 | 1 | 319 | 3 | 317 | 3.65e-108 | 318 |
| MS.gene072520.t1 | MTR_7g108825 | 60.924 | 238 | 91 | 2 | 1 | 238 | 1 | 236 | 4.58e-101 | 296 |
| MS.gene072520.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 72 | 319 | 1 | 195 | 1.49e-93 | 276 |
| MS.gene072520.t1 | MTR_1g083480 | 77.987 | 159 | 31 | 2 | 1 | 156 | 1 | 158 | 5.55e-89 | 264 |
| MS.gene072520.t1 | MTR_8g076680 | 50.000 | 238 | 117 | 2 | 1 | 238 | 3 | 238 | 7.12e-83 | 250 |
| MS.gene072520.t1 | MTR_2g090240 | 37.072 | 321 | 188 | 6 | 1 | 318 | 1 | 310 | 6.05e-67 | 212 |
| MS.gene072520.t1 | MTR_4g089060 | 37.695 | 321 | 185 | 6 | 1 | 318 | 1 | 309 | 9.38e-65 | 207 |
| MS.gene072520.t1 | MTR_2g090245 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 1.84e-64 | 206 |
| MS.gene072520.t1 | MTR_4g089040 | 37.695 | 321 | 185 | 6 | 1 | 318 | 1 | 309 | 4.43e-64 | 205 |
| MS.gene072520.t1 | MTR_3g024250 | 84.906 | 106 | 16 | 0 | 47 | 152 | 2 | 107 | 4.53e-62 | 194 |
| MS.gene072520.t1 | MTR_4g089060 | 35.057 | 348 | 184 | 7 | 1 | 318 | 1 | 336 | 9.40e-60 | 194 |
| MS.gene072520.t1 | MTR_4g089060 | 39.914 | 233 | 131 | 3 | 1 | 231 | 1 | 226 | 1.77e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072520.t1 | AT3G05600 | 60.802 | 324 | 122 | 4 | 1 | 319 | 1 | 324 | 3.66e-150 | 425 |
| MS.gene072520.t1 | AT4G02340 | 58.567 | 321 | 126 | 4 | 1 | 319 | 1 | 316 | 1.67e-140 | 400 |
| MS.gene072520.t1 | AT2G26740 | 60.870 | 322 | 119 | 4 | 4 | 319 | 1 | 321 | 6.11e-131 | 376 |
| MS.gene072520.t1 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 6.79e-128 | 370 |
| MS.gene072520.t1 | AT2G26750 | 58.879 | 321 | 126 | 4 | 4 | 319 | 1 | 320 | 9.26e-126 | 362 |
| MS.gene072520.t1 | AT4G15955 | 50.920 | 326 | 122 | 4 | 5 | 319 | 6 | 304 | 2.74e-111 | 325 |
| MS.gene072520.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 8.56e-110 | 319 |
| MS.gene072520.t1 | AT3G51000 | 47.401 | 327 | 151 | 6 | 3 | 319 | 4 | 319 | 3.78e-104 | 308 |
| MS.gene072520.t1 | AT4G15955 | 59.770 | 174 | 60 | 2 | 5 | 168 | 6 | 179 | 1.21e-71 | 220 |
| MS.gene072520.t1 | AT4G15955 | 60.606 | 165 | 55 | 2 | 5 | 159 | 6 | 170 | 7.87e-68 | 210 |
Find 87 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:+4067978 | None:intergenic |
| GGCATCAACGGTCTTGATTT+TGG | 0.153935 | 7.4:+4067923 | None:intergenic |
| TACTCTCCTTTGGGAAATAT+TGG | 0.228521 | 7.4:+4067171 | None:intergenic |
| GGTAAGGTGTCAGGAGTATC+TGG | 0.233107 | 7.4:+4067132 | None:intergenic |
| TTATTATATCTGTAGATTTC+AGG | 0.251191 | 7.4:-4067877 | MS.gene072520:intron |
| TTGGGGTTTCTACGCATTAA+TGG | 0.262210 | 7.4:+4067942 | None:intergenic |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.4:-4066631 | MS.gene072520:CDS |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.4:-4066625 | MS.gene072520:CDS |
| TGTTTCTTGTTGGTCATGAT+TGG | 0.327627 | 7.4:-4068037 | MS.gene072520:CDS |
| CACAGAACAGTGGAAGTAAA+TGG | 0.328559 | 7.4:-4068308 | MS.gene072520:CDS |
| AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.4:-4066674 | MS.gene072520:CDS |
| TCCAGTTCCATACTCTCCTT+TGG | 0.342560 | 7.4:+4067161 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.4:-4067075 | MS.gene072520:CDS |
| GATAATCACTTCTTCCAGAT+TGG | 0.362380 | 7.4:+4066542 | None:intergenic |
| GATGCCATGCGTGCTGCTTA+TGG | 0.370336 | 7.4:-4067906 | MS.gene072520:CDS |
| ATCCTGACAACTCGGAAAAC+TGG | 0.375136 | 7.4:-4067198 | MS.gene072520:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:+4068221 | None:intergenic |
| GTTTCTTGTTGGTCATGATT+GGG | 0.381777 | 7.4:-4068036 | MS.gene072520:CDS |
| ATATTTCCCAAAGGAGAGTA+TGG | 0.384636 | 7.4:-4067168 | MS.gene072520:CDS |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.4:+4067123 | None:intergenic |
| CATGATTGGGGTGCTATCAT+TGG | 0.391157 | 7.4:-4068023 | MS.gene072520:CDS |
| GAGAGCCGAGCGCCGCAATC+TGG | 0.391586 | 7.4:+4068195 | None:intergenic |
| CGCCACCAGATTGCGGCGCT+CGG | 0.393265 | 7.4:-4068200 | MS.gene072520:CDS |
| GTCGATCAAGTGTTTCTTGT+TGG | 0.393553 | 7.4:-4068047 | MS.gene072520:CDS |
| TTTGAGAAAACAGGCTTCAC+TGG | 0.397561 | 7.4:-4067066 | MS.gene072520:CDS |
| ATCGCAGAAACCGGGCGAAA+TGG | 0.400152 | 7.4:-4067265 | MS.gene072520:intron |
| GAAGAAGTGATTATCCAAAA+AGG | 0.403789 | 7.4:-4066534 | MS.gene072520:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.4:-4067125 | MS.gene072520:CDS |
| TCACCATAGCCACGCAGATC+TGG | 0.413961 | 7.4:+4068152 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.4:-4066697 | MS.gene072520:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.4:-4068248 | MS.gene072520:CDS |
| CCCAAAGGAGAGTATGGAAC+TGG | 0.428533 | 7.4:-4067162 | MS.gene072520:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.4:-4066639 | MS.gene072520:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:+4067979 | None:intergenic |
| CAAGGAAGATGTGCCCAATC+TGG | 0.434486 | 7.4:-4066556 | MS.gene072520:CDS |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:-4068223 | MS.gene072520:CDS |
| ATAATCACTTCTTCCAGATT+GGG | 0.447163 | 7.4:+4066543 | None:intergenic |
| CCAGTTCCATACTCTCCTTT+GGG | 0.449755 | 7.4:+4067162 | None:intergenic |
| ATTGCGGCGCTCGGCTCTCT+CGG | 0.459514 | 7.4:-4068191 | MS.gene072520:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.4:+4068240 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.4:-4066675 | MS.gene072520:CDS |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.471828 | 7.4:+4067116 | None:intergenic |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.4:+4068248 | None:intergenic |
| GCTCCAGATCTGCGTGGCTA+TGG | 0.482806 | 7.4:-4068155 | MS.gene072520:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:-4068281 | MS.gene072520:CDS |
| ATCTGAGCTTCCATTTCGCC+CGG | 0.491141 | 7.4:+4067255 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:-4068232 | MS.gene072520:CDS |
| TCTCCTTTGGGAAATATTGG+AGG | 0.507438 | 7.4:+4067174 | None:intergenic |
| AGCCGAGCGCCGCAATCTGG+TGG | 0.510220 | 7.4:+4068198 | None:intergenic |
| GGGCGAAATGGAAGCTCAGA+TGG | 0.525021 | 7.4:-4067253 | MS.gene072520:CDS |
| ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.4:-4066661 | MS.gene072520:CDS |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7.4:-4067243 | MS.gene072520:CDS |
| GTTGCACTTATAGATTTGCT+CGG | 0.548076 | 7.4:-4068071 | MS.gene072520:CDS |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:-4068272 | MS.gene072520:CDS |
| TTATCTTTATCGCAGAAACC+GGG | 0.558593 | 7.4:-4067273 | MS.gene072520:intron |
| TTTCTTGTTGGTCATGATTG+GGG | 0.559325 | 7.4:-4068035 | MS.gene072520:CDS |
| GTGTAGCTACTAACTGAAGA+TGG | 0.564708 | 7.4:+4068119 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.567094 | 7.4:-4068207 | MS.gene072520:CDS |
| ATTGGGGTGCTATCATTGGT+TGG | 0.568173 | 7.4:-4068019 | MS.gene072520:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.4:+4066636 | None:intergenic |
| TCTTCAGTTAGTAGCTACAC+AGG | 0.571639 | 7.4:-4068116 | MS.gene072520:CDS |
| ATCTCCATAAGCAGCACGCA+TGG | 0.574955 | 7.4:+4067902 | None:intergenic |
| TCATCTTCTGTAAGCCAAGA+GGG | 0.578236 | 7.4:+4067111 | None:intergenic |
| AAGAGAAACAGAGAGATGGA+AGG | 0.578444 | 7.4:-4068338 | None:intergenic |
| GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.4:-4066583 | MS.gene072520:CDS |
| TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.4:-4066584 | MS.gene072520:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.590336 | 7.4:+4067962 | None:intergenic |
| GCCACGCAGATCTGGAGCAA+CGG | 0.594783 | 7.4:+4068160 | None:intergenic |
| AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.4:-4066582 | MS.gene072520:CDS |
| AGCAGCACGCATGGCATCAA+CGG | 0.605048 | 7.4:+4067911 | None:intergenic |
| GTAAGGTGTCAGGAGTATCT+GGG | 0.606766 | 7.4:+4067133 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.4:-4066688 | MS.gene072520:intron |
| AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.4:-4066588 | MS.gene072520:CDS |
| TAACAATGAAGAAGCAGCAG+AGG | 0.620175 | 7.4:-4066499 | MS.gene072520:CDS |
| ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.4:+4066596 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:+4068234 | None:intergenic |
| GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.4:-4066673 | MS.gene072520:CDS |
| ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.4:+4067088 | None:intergenic |
| ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.4:-4066585 | MS.gene072520:CDS |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.4:-4066680 | MS.gene072520:CDS |
| GTACACCTCACTAAACATGA+AGG | 0.657206 | 7.4:-4066601 | MS.gene072520:CDS |
| GTCATCTTCTGTAAGCCAAG+AGG | 0.661237 | 7.4:+4067110 | None:intergenic |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:-4068318 | MS.gene072520:CDS |
| GGTCCTCCAATATTTCCCAA+AGG | 0.693733 | 7.4:-4067177 | MS.gene072520:CDS |
| GCCGTTGCTCCAGATCTGCG+TGG | 0.702325 | 7.4:-4068161 | MS.gene072520:CDS |
| GCAGATCTGGAGCAACGGCG+CGG | 0.714874 | 7.4:+4068165 | None:intergenic |
| GCAAATCTATAAGTGCAACA+AGG | 0.736275 | 7.4:+4068075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATAATATTTTTTTAAG+GGG | - | chr7.4:4067216-4067235 | MS.gene072520:CDS | 10.0% |
| !!! | GAATCATAATATTTTTTTAA+GGG | - | chr7.4:4067215-4067234 | MS.gene072520:CDS | 10.0% |
| !!! | TGAATCATAATATTTTTTTA+AGG | - | chr7.4:4067214-4067233 | MS.gene072520:CDS | 10.0% |
| !! | AAAAAAAAAACACTTGATTA+AGG | - | chr7.4:4067062-4067081 | MS.gene072520:CDS | 15.0% |
| !! | TATAGAGATCTATAAAAAAA+AGG | + | chr7.4:4067474-4067493 | None:intergenic | 15.0% |
| !!! | ATCAAGTGTTTTTTTTTTTA+AGG | + | chr7.4:4067060-4067079 | None:intergenic | 15.0% |
| !!! | CCAATAATAGTTTTAAAAAA+TGG | + | chr7.4:4067958-4067977 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAAACTATTAT+TGG | - | chr7.4:4067955-4067974 | MS.gene072520:CDS | 15.0% |
| !! | AATATTATGATTCAACCATA+AGG | + | chr7.4:4067208-4067227 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAGTAAATTAG+GGG | + | chr7.4:4066967-4066986 | None:intergenic | 20.0% |
| !! | GGATTTCTTAAAGTAAATTA+GGG | + | chr7.4:4066968-4066987 | None:intergenic | 20.0% |
| !! | TTATTATATCTGTAGATTTC+AGG | - | chr7.4:4066904-4066923 | MS.gene072520:intron | 20.0% |
| !!! | AAGAAATCCCTAATATTTTA+TGG | - | chr7.4:4066979-4066998 | MS.gene072520:intron | 20.0% |
| !!! | AGAAATCCCTAATATTTTAT+GGG | - | chr7.4:4066980-4066999 | MS.gene072520:intron | 20.0% |
| !!! | TATATGTTGACAATTCTTTT+TGG | - | chr7.4:4067813-4067832 | MS.gene072520:intron | 20.0% |
| ! | AACTTGTCCCATAAAATATT+AGG | + | chr7.4:4066990-4067009 | None:intergenic | 25.0% |
| ! | AATGCATCTTTCATTAGAAT+TGG | + | chr7.4:4068063-4068082 | None:intergenic | 25.0% |
| ! | ACTTGTCCCATAAAATATTA+GGG | + | chr7.4:4066989-4067008 | None:intergenic | 25.0% |
| ! | ATATTTGTGGAAAACAACAA+AGG | + | chr7.4:4067796-4067815 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.4:4068083-4068102 | MS.gene072520:CDS | 25.0% |
| ! | GAATTGTCAACATATATTTG+TGG | + | chr7.4:4067809-4067828 | None:intergenic | 25.0% |
| ! | GGGATTTCTTAAAGTAAATT+AGG | + | chr7.4:4066969-4066988 | None:intergenic | 25.0% |
| ! | TGATTGAATATAACATGTGT+CGG | + | chr7.4:4067932-4067951 | None:intergenic | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.4:4068084-4068103 | MS.gene072520:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.4:4066500-4066519 | MS.gene072520:CDS | 30.0% | |
| AACAACACTCAACACAAAAT+TGG | + | chr7.4:4068003-4068022 | None:intergenic | 30.0% | |
| AATCAAGTGTTAAACACACT+TGG | + | chr7.4:4067145-4067164 | None:intergenic | 30.0% | |
| ATAATCACTTCTTCCAGATT+GGG | + | chr7.4:4068241-4068260 | None:intergenic | 30.0% | |
| ATAGATCTCTATATCATGAG+AGG | - | chr7.4:4067279-4067298 | MS.gene072520:intron | 30.0% | |
| ATCAAGTGTTAAACACACTT+GGG | + | chr7.4:4067144-4067163 | None:intergenic | 30.0% | |
| ATTATCTTTATCGCAGAAAC+CGG | - | chr7.4:4067507-4067526 | MS.gene072520:intron | 30.0% | |
| ATTTGGAGACAAAATAAGCA+AGG | + | chr7.4:4067696-4067715 | None:intergenic | 30.0% | |
| CATACAATACACCAAATGAT+GGG | - | chr7.4:4067400-4067419 | MS.gene072520:intron | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | - | chr7.4:4068150-4068169 | MS.gene072520:CDS | 30.0% | |
| GAAGAAGTGATTATCCAAAA+AGG | - | chr7.4:4068247-4068266 | MS.gene072520:CDS | 30.0% | |
| TCTATAAAAAAAAGGCAACC+CGG | + | chr7.4:4067466-4067485 | None:intergenic | 30.0% | |
| TGAAAAATATCCTGACAACT+CGG | - | chr7.4:4067575-4067594 | MS.gene072520:intron | 30.0% | |
| ! | TACACAGGTTTTCATATAGT+GGG | - | chr7.4:4066680-4066699 | MS.gene072520:CDS | 30.0% |
| AGTCAAAAGAGGAAACCTTA+TGG | - | chr7.4:4067190-4067209 | MS.gene072520:CDS | 35.0% | |
| AGTGATTATCCAAAAAGGAG+TGG | - | chr7.4:4068252-4068271 | MS.gene072520:CDS | 35.0% | |
| AGTTGAGTCTAAGTCAAAAG+AGG | - | chr7.4:4067179-4067198 | MS.gene072520:CDS | 35.0% | |
| ATACTCCTTCATGTTTAGTG+AGG | + | chr7.4:4068188-4068207 | None:intergenic | 35.0% | |
| ATATTTCCCAAAGGAGAGTA+TGG | - | chr7.4:4067613-4067632 | MS.gene072520:intron | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.4:4066509-4066528 | MS.gene072520:CDS | 35.0% | |
| GATAATCACTTCTTCCAGAT+TGG | + | chr7.4:4068242-4068261 | None:intergenic | 35.0% | |
| GCAAATCTATAAGTGCAACA+AGG | + | chr7.4:4066709-4066728 | None:intergenic | 35.0% | |
| GCATACAATACACCAAATGA+TGG | - | chr7.4:4067399-4067418 | MS.gene072520:intron | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | - | chr7.4:4067706-4067725 | MS.gene072520:intron | 35.0% | |
| GTTTCTTGTTGGTCATGATT+GGG | - | chr7.4:4066745-4066764 | MS.gene072520:intron | 35.0% | |
| TATATCATGAGAGGTAACCT+TGG | - | chr7.4:4067288-4067307 | MS.gene072520:intron | 35.0% | |
| TATCAACACATATCGAACAC+CGG | + | chr7.4:4067902-4067921 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.4:4068148-4068167 | None:intergenic | 35.0% | |
| TGTTTCTTGTTGGTCATGAT+TGG | - | chr7.4:4066744-4066763 | MS.gene072520:intron | 35.0% | |
| TTATCTTTATCGCAGAAACC+GGG | - | chr7.4:4067508-4067527 | MS.gene072520:intron | 35.0% | |
| TTTCTTGTTGGTCATGATTG+GGG | - | chr7.4:4066746-4066765 | MS.gene072520:intron | 35.0% | |
| ! | AACATGAAGGAGTATATCCA+TGG | - | chr7.4:4068193-4068212 | MS.gene072520:CDS | 35.0% |
| ! | AATATAACATGTGTCGGTGT+CGG | + | chr7.4:4067926-4067945 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.4:4066806-4066825 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.4:4066805-4066824 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | - | chr7.4:4068156-4068175 | MS.gene072520:CDS | 35.0% |
| ! | CTACACAGGTTTTCATATAG+TGG | - | chr7.4:4066679-4066698 | MS.gene072520:CDS | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr7.4:4067713-4067732 | None:intergenic | 35.0% |
| ! | GTTGCACTTATAGATTTGCT+CGG | - | chr7.4:4066710-4066729 | MS.gene072520:intron | 35.0% |
| ! | TACTCTCCTTTGGGAAATAT+TGG | + | chr7.4:4067613-4067632 | None:intergenic | 35.0% |
| !!! | CTTTTTTCATGTGCCAGTTT+CGG | + | chr7.4:4067117-4067136 | None:intergenic | 35.0% |
| AAAGCCTCTTGTGTGAAAAC+AGG | - | chr7.4:4067368-4067387 | MS.gene072520:intron | 40.0% | |
| AAGCCTCTTGTGTGAAAACA+GGG | - | chr7.4:4067369-4067388 | MS.gene072520:intron | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.4:4066463-4066482 | MS.gene072520:CDS | 40.0% | |
| ATCAACACATATCGAACACC+GGG | + | chr7.4:4067901-4067920 | None:intergenic | 40.0% | |
| ATGGAATGGGGTGAAAATCA+AGG | - | chr7.4:4068120-4068139 | MS.gene072520:CDS | 40.0% | |
| CAACTTTATCAGTTACGCCA+AGG | + | chr7.4:4067308-4067327 | None:intergenic | 40.0% | |
| CACAGAACAGTGGAAGTAAA+TGG | - | chr7.4:4066473-4066492 | MS.gene072520:CDS | 40.0% | |
| CGAAACTGGCACATGAAAAA+AGG | - | chr7.4:4067115-4067134 | MS.gene072520:CDS | 40.0% | |
| GTACACCTCACTAAACATGA+AGG | - | chr7.4:4068180-4068199 | MS.gene072520:CDS | 40.0% | |
| GTCGATCAAGTGTTTCTTGT+TGG | - | chr7.4:4066734-4066753 | MS.gene072520:intron | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.4:4068142-4068161 | MS.gene072520:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGA+TGG | + | chr7.4:4066665-4066684 | None:intergenic | 40.0% | |
| GTTGTAGTCATGTGACTGAA+AGG | - | chr7.4:4067324-4067343 | MS.gene072520:intron | 40.0% | |
| TAACAATGAAGAAGCAGCAG+AGG | - | chr7.4:4068282-4068301 | MS.gene072520:CDS | 40.0% | |
| TCATCTTCTGTAAGCCAAGA+GGG | + | chr7.4:4067673-4067692 | None:intergenic | 40.0% | |
| TCTTCAGTTAGTAGCTACAC+AGG | - | chr7.4:4066665-4066684 | MS.gene072520:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.4:4066822-4066841 | None:intergenic | 40.0% | |
| TTGGGGTTTCTACGCATTAA+TGG | + | chr7.4:4066842-4066861 | None:intergenic | 40.0% | |
| TTTCAGTTTGAAGACATGCC+CGG | - | chr7.4:4067880-4067899 | MS.gene072520:CDS | 40.0% | |
| TTTGAGAAAACAGGCTTCAC+TGG | - | chr7.4:4067715-4067734 | MS.gene072520:intron | 40.0% | |
| ! | ATGAAGGAGTATATCCATGG+TGG | - | chr7.4:4068196-4068215 | MS.gene072520:CDS | 40.0% |
| ! | CATCAACGGTCTTGATTTTG+GGG | + | chr7.4:4066859-4066878 | None:intergenic | 40.0% |
| ! | GCATCAACGGTCTTGATTTT+GGG | + | chr7.4:4066860-4066879 | None:intergenic | 40.0% |
| ! | TCTCCTTTGGGAAATATTGG+AGG | + | chr7.4:4067610-4067629 | None:intergenic | 40.0% |
| ! | TGAAGGAGTATATCCATGGT+GGG | - | chr7.4:4068197-4068216 | MS.gene072520:CDS | 40.0% |
| ! | TTACCCTGTTTTCACACAAG+AGG | + | chr7.4:4067375-4067394 | None:intergenic | 40.0% |
| ! | TTGATTTTCACCCCATTCCA+TGG | + | chr7.4:4068121-4068140 | None:intergenic | 40.0% |
| ACTAAAGCTCCTGCATACGA+AGG | + | chr7.4:4067440-4067459 | None:intergenic | 45.0% | |
| AGGGGTTACAGAGAGAAAAG+TGG | + | chr7.4:4066949-4066968 | None:intergenic | 45.0% | |
| ATCCTGACAACTCGGAAAAC+TGG | - | chr7.4:4067583-4067602 | MS.gene072520:intron | 45.0% | |
| CCAGTTCCATACTCTCCTTT+GGG | + | chr7.4:4067622-4067641 | None:intergenic | 45.0% | |
| CTAAAGCTCCTGCATACGAA+GGG | + | chr7.4:4067439-4067458 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+AGG | - | chr7.4:4067604-4067623 | MS.gene072520:intron | 45.0% | |
| GTCATCTTCTGTAAGCCAAG+AGG | + | chr7.4:4067674-4067693 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr7.4:4067330-4067349 | MS.gene072520:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr7.4:4067331-4067350 | MS.gene072520:intron | 45.0% | |
| TCCAGTTCCATACTCTCCTT+TGG | + | chr7.4:4067623-4067642 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.4:4066558-4066577 | MS.gene072520:CDS | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | + | chr7.4:4067668-4067687 | None:intergenic | 45.0% | |
| TTGAACTAGCTCACCGAAAC+TGG | - | chr7.4:4067101-4067120 | MS.gene072520:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.4:4068093-4068112 | MS.gene072520:CDS | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+GGG | - | chr7.4:4068199-4068218 | MS.gene072520:CDS | 45.0% |
| ! | ATTGGGGTGCTATCATTGGT+TGG | - | chr7.4:4066762-4066781 | MS.gene072520:intron | 45.0% |
| ! | CATGATTGGGGTGCTATCAT+TGG | - | chr7.4:4066758-4066777 | MS.gene072520:intron | 45.0% |
| ! | GAAGGAGTATATCCATGGTG+GGG | - | chr7.4:4068198-4068217 | MS.gene072520:CDS | 45.0% |
| ! | GGCATCAACGGTCTTGATTT+TGG | + | chr7.4:4066861-4066880 | None:intergenic | 45.0% |
| ! | TAAAGTGCGCCACTCCTTTT+TGG | + | chr7.4:4068264-4068283 | None:intergenic | 45.0% |
| !! | GTAAGGTGTCAGGAGTATCT+GGG | + | chr7.4:4067651-4067670 | None:intergenic | 45.0% |
| !! | TCACACAAGAGGCTTTTTCC+AGG | + | chr7.4:4067364-4067383 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.4:4066550-4066569 | None:intergenic | 50.0% | |
| AGCTGATGGCACCATGGAAT+GGG | - | chr7.4:4068107-4068126 | MS.gene072520:CDS | 50.0% | |
| ATCTCCATAAGCAGCACGCA+TGG | + | chr7.4:4066882-4066901 | None:intergenic | 50.0% | |
| ATCTGAGCTTCCATTTCGCC+CGG | + | chr7.4:4067529-4067548 | None:intergenic | 50.0% | |
| CAAGGAAGATGTGCCCAATC+TGG | - | chr7.4:4068225-4068244 | MS.gene072520:CDS | 50.0% | |
| CATACGAAGGGTCTGGAAAG+GGG | + | chr7.4:4067427-4067446 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.4:4066533-4066552 | MS.gene072520:CDS | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | - | chr7.4:4067538-4067557 | MS.gene072520:intron | 50.0% | |
| GCATACGAAGGGTCTGGAAA+GGG | + | chr7.4:4067428-4067447 | None:intergenic | 50.0% | |
| TGCATACGAAGGGTCTGGAA+AGG | + | chr7.4:4067429-4067448 | None:intergenic | 50.0% | |
| TGGAAAGGGGTCCCATCATT+TGG | + | chr7.4:4067414-4067433 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.4:4066549-4066568 | MS.gene072520:CDS | 50.0% | |
| TTTCCAGACCCTTCGTATGC+AGG | - | chr7.4:4067428-4067447 | MS.gene072520:intron | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr7.4:4067444-4067463 | MS.gene072520:intron | 50.0% |
| ! | CCCAAAGGAGAGTATGGAAC+TGG | - | chr7.4:4067619-4067638 | MS.gene072520:intron | 50.0% |
| ! | GACCAGTTTTCCGAGTTGTC+AGG | + | chr7.4:4067588-4067607 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGGGGATTCA+AGG | - | chr7.4:4068207-4068226 | MS.gene072520:CDS | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+TGG | + | chr7.4:4067652-4067671 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr7.4:4067343-4067362 | MS.gene072520:intron | 55.0% | |
| AGCAGCACGCATGGCATCAA+CGG | + | chr7.4:4066873-4066892 | None:intergenic | 55.0% | |
| ATCGCAGAAACCGGGCGAAA+TGG | - | chr7.4:4067516-4067535 | MS.gene072520:intron | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.4:4068101-4068120 | MS.gene072520:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.4:4066544-4066563 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.4:4066536-4066555 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | - | chr7.4:4067656-4067675 | MS.gene072520:intron | 55.0% | |
| CTTCCTTGAATCCCCCACCA+TGG | + | chr7.4:4068213-4068232 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.4:4068106-4068125 | MS.gene072520:CDS | 55.0% | |
| GCTGATGGCACCATGGAATG+GGG | - | chr7.4:4068108-4068127 | MS.gene072520:CDS | 55.0% | |
| GGGCGAAATGGAAGCTCAGA+TGG | - | chr7.4:4067528-4067547 | MS.gene072520:intron | 55.0% | |
| TCACCATAGCCACGCAGATC+TGG | + | chr7.4:4066632-4066651 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr7.4:4067661-4067680 | None:intergenic | 55.0% |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr7.4:4067445-4067464 | MS.gene072520:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.4:4066563-4066582 | None:intergenic | 55.0% |
| !! | GATGCCATGCGTGCTGCTTA+TGG | - | chr7.4:4066875-4066894 | MS.gene072520:intron | 55.0% |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.4:4066574-4066593 | MS.gene072520:CDS | 60.0% | |
| GCTCCAGATCTGCGTGGCTA+TGG | - | chr7.4:4066626-4066645 | MS.gene072520:CDS | 60.0% | |
| GCTCCTGCATACGAAGGGTC+TGG | + | chr7.4:4067434-4067453 | None:intergenic | 60.0% | |
| ! | GCCACGCAGATCTGGAGCAA+CGG | + | chr7.4:4066624-4066643 | None:intergenic | 60.0% |
| ATTGCGGCGCTCGGCTCTCT+CGG | - | chr7.4:4066590-4066609 | MS.gene072520:CDS | 65.0% | |
| GCCGTTGCTCCAGATCTGCG+TGG | - | chr7.4:4066620-4066639 | MS.gene072520:CDS | 65.0% | |
| ! | GCAGATCTGGAGCAACGGCG+CGG | + | chr7.4:4066619-4066638 | None:intergenic | 65.0% |
| CGCCACCAGATTGCGGCGCT+CGG | - | chr7.4:4066581-4066600 | MS.gene072520:CDS | 70.0% | |
| ! | AGCCGAGCGCCGCAATCTGG+TGG | + | chr7.4:4066586-4066605 | None:intergenic | 70.0% |
| ! | GAGAGCCGAGCGCCGCAATC+TGG | + | chr7.4:4066589-4066608 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4066458 | 4068345 | 4066458 | ID=MS.gene072520 |
| chr7.4 | mRNA | 4066458 | 4068345 | 4066458 | ID=MS.gene072520.t1;Parent=MS.gene072520 |
| chr7.4 | exon | 4067878 | 4068345 | 4067878 | ID=MS.gene072520.t1.exon1;Parent=MS.gene072520.t1 |
| chr7.4 | CDS | 4067878 | 4068345 | 4067878 | ID=cds.MS.gene072520.t1;Parent=MS.gene072520.t1 |
| chr7.4 | exon | 4067036 | 4067280 | 4067036 | ID=MS.gene072520.t1.exon2;Parent=MS.gene072520.t1 |
| chr7.4 | CDS | 4067036 | 4067280 | 4067036 | ID=cds.MS.gene072520.t1;Parent=MS.gene072520.t1 |
| chr7.4 | exon | 4066458 | 4066704 | 4066458 | ID=MS.gene072520.t1.exon3;Parent=MS.gene072520.t1 |
| chr7.4 | CDS | 4066458 | 4066704 | 4066458 | ID=cds.MS.gene072520.t1;Parent=MS.gene072520.t1 |
| Gene Sequence |
| Protein sequence |
