Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050928.t1 | RHN49252.1 | 95.9 | 319 | 13 | 0 | 1 | 319 | 31 | 349 | 2.20E-183 | 651.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050928.t1 | I6YGS0 | 34.5 | 319 | 191 | 6 | 7 | 316 | 7 | 316 | 2.4e-53 | 210.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050928.t1 | A2Q324 | 95.9 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 1.6e-183 | 651.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050928 | MS.gene072520 | 0.953447 | 2.69E-111 | -1.69E-46 |
| MS.gene050928 | MS.gene37323 | 0.917841 | 3.25E-86 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050928 | MS.gene07001 | PPI |
| MS.gene77823 | MS.gene050928 | PPI |
| MS.gene050928 | MS.gene066361 | PPI |
| MS.gene050928 | MS.gene035371 | PPI |
| MS.gene050928 | MS.gene071502 | PPI |
| MS.gene071504 | MS.gene050928 | PPI |
| MS.gene066360 | MS.gene050928 | PPI |
| MS.gene89620 | MS.gene050928 | PPI |
| MS.gene035369 | MS.gene050928 | PPI |
| MS.gene050928 | MS.gene22955 | PPI |
| MS.gene050928 | MS.gene071500 | PPI |
| MS.gene050928 | MS.gene041604 | PPI |
| MS.gene76453 | MS.gene050928 | PPI |
| MS.gene050928 | MS.gene025707 | PPI |
| MS.gene035373 | MS.gene050928 | PPI |
| MS.gene050928 | MS.gene012063 | PPI |
| MS.gene035367 | MS.gene050928 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050928.t1 | MTR_7g113050 | 95.925 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 0.0 | 644 |
| MS.gene050928.t1 | MTR_7g113030 | 94.044 | 319 | 19 | 0 | 1 | 319 | 1 | 319 | 0.0 | 632 |
| MS.gene050928.t1 | MTR_7g112615 | 92.476 | 319 | 24 | 0 | 1 | 319 | 1 | 319 | 0.0 | 622 |
| MS.gene050928.t1 | MTR_7g112620 | 90.596 | 319 | 30 | 0 | 1 | 319 | 1 | 319 | 0.0 | 611 |
| MS.gene050928.t1 | MTR_7g113020 | 87.774 | 319 | 39 | 0 | 1 | 319 | 1 | 319 | 0.0 | 599 |
| MS.gene050928.t1 | MTR_7g112960 | 76.324 | 321 | 72 | 2 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene050928.t1 | MTR_7g112963 | 76.324 | 321 | 72 | 2 | 1 | 319 | 1 | 319 | 0.0 | 515 |
| MS.gene050928.t1 | MTR_7g112970 | 74.922 | 319 | 77 | 2 | 1 | 319 | 1 | 316 | 0.0 | 509 |
| MS.gene050928.t1 | MTR_4g005160 | 72.755 | 323 | 83 | 3 | 1 | 319 | 1 | 322 | 0.0 | 507 |
| MS.gene050928.t1 | MTR_7g113050 | 94.958 | 238 | 12 | 0 | 1 | 238 | 1 | 238 | 5.02e-173 | 479 |
| MS.gene050928.t1 | MTR_7g112615 | 92.437 | 238 | 18 | 0 | 1 | 238 | 1 | 238 | 8.85e-168 | 466 |
| MS.gene050928.t1 | MTR_7g113010 | 70.671 | 283 | 79 | 2 | 1 | 281 | 1 | 281 | 4.69e-150 | 434 |
| MS.gene050928.t1 | MTR_4g120240 | 60.748 | 321 | 122 | 3 | 1 | 319 | 37 | 355 | 4.19e-146 | 416 |
| MS.gene050928.t1 | MTR_7g108825 | 61.755 | 319 | 120 | 2 | 1 | 319 | 1 | 317 | 2.07e-144 | 410 |
| MS.gene050928.t1 | MTR_7g112615 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 9.93e-109 | 314 |
| MS.gene050928.t1 | MTR_8g076680 | 48.276 | 319 | 161 | 3 | 1 | 319 | 3 | 317 | 2.77e-107 | 315 |
| MS.gene050928.t1 | MTR_7g108825 | 60.924 | 238 | 91 | 2 | 1 | 238 | 1 | 236 | 2.71e-101 | 297 |
| MS.gene050928.t1 | MTR_7g112910 | 59.036 | 249 | 47 | 5 | 72 | 319 | 1 | 195 | 9.51e-93 | 274 |
| MS.gene050928.t1 | MTR_1g083480 | 77.358 | 159 | 32 | 2 | 1 | 156 | 1 | 158 | 3.95e-88 | 261 |
| MS.gene050928.t1 | MTR_8g076680 | 49.580 | 238 | 118 | 2 | 1 | 238 | 3 | 238 | 5.62e-82 | 248 |
| MS.gene050928.t1 | MTR_2g090240 | 37.072 | 321 | 188 | 6 | 1 | 318 | 1 | 310 | 4.98e-67 | 213 |
| MS.gene050928.t1 | MTR_4g089060 | 37.695 | 321 | 185 | 6 | 1 | 318 | 1 | 309 | 6.09e-65 | 207 |
| MS.gene050928.t1 | MTR_2g090245 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 1.50e-64 | 206 |
| MS.gene050928.t1 | MTR_4g089040 | 37.695 | 321 | 185 | 6 | 1 | 318 | 1 | 309 | 2.91e-64 | 205 |
| MS.gene050928.t1 | MTR_3g024250 | 83.962 | 106 | 17 | 0 | 47 | 152 | 2 | 107 | 3.34e-61 | 191 |
| MS.gene050928.t1 | MTR_4g089060 | 35.057 | 348 | 184 | 7 | 1 | 318 | 1 | 336 | 6.96e-60 | 195 |
| MS.gene050928.t1 | MTR_4g089060 | 39.914 | 233 | 131 | 3 | 1 | 231 | 1 | 226 | 1.11e-53 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050928.t1 | AT3G05600 | 60.494 | 324 | 123 | 4 | 1 | 319 | 1 | 324 | 1.55e-149 | 423 |
| MS.gene050928.t1 | AT4G02340 | 58.567 | 321 | 126 | 4 | 1 | 319 | 1 | 316 | 6.82e-141 | 401 |
| MS.gene050928.t1 | AT2G26740 | 60.870 | 322 | 119 | 4 | 4 | 319 | 1 | 321 | 3.74e-131 | 376 |
| MS.gene050928.t1 | AT4G15960 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 2.68e-128 | 371 |
| MS.gene050928.t1 | AT2G26750 | 58.879 | 321 | 126 | 4 | 4 | 319 | 1 | 320 | 5.48e-126 | 363 |
| MS.gene050928.t1 | AT4G15955 | 50.920 | 326 | 122 | 4 | 5 | 319 | 6 | 304 | 1.60e-111 | 326 |
| MS.gene050928.t1 | AT3G05600 | 61.317 | 243 | 89 | 4 | 1 | 238 | 1 | 243 | 3.99e-109 | 317 |
| MS.gene050928.t1 | AT3G51000 | 47.095 | 327 | 152 | 6 | 3 | 319 | 4 | 319 | 2.81e-103 | 305 |
| MS.gene050928.t1 | AT4G15955 | 59.770 | 174 | 60 | 2 | 5 | 168 | 6 | 179 | 7.85e-72 | 220 |
| MS.gene050928.t1 | AT4G15955 | 60.606 | 165 | 55 | 2 | 5 | 159 | 6 | 170 | 4.93e-68 | 211 |
Find 86 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.1:+3520452 | None:intergenic |
| GGCATCAACGGTCTTGATTT+TGG | 0.153935 | 7.1:+3520397 | None:intergenic |
| TACTCTCCTTTGGGAAATAT+TGG | 0.228521 | 7.1:+3519646 | None:intergenic |
| GGTAAGGTGTCAGGAGTATC+TGG | 0.233107 | 7.1:+3519607 | None:intergenic |
| TTATTATATCTGTAGATTTC+AGG | 0.251191 | 7.1:-3520351 | MS.gene050928:intron |
| TTGGGGTTTCTACGCATTAA+TGG | 0.262210 | 7.1:+3520416 | None:intergenic |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.1:-3519105 | MS.gene050928:CDS |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.1:-3519099 | MS.gene050928:CDS |
| CACAGAACAGTGGAAGTAAA+TGG | 0.328559 | 7.1:-3520782 | MS.gene050928:CDS |
| TGTTTCTAGTTGGTCATGAT+TGG | 0.334939 | 7.1:-3520511 | MS.gene050928:CDS |
| AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.1:-3519148 | MS.gene050928:CDS |
| TCCAGTTCCATACTCTCCTT+TGG | 0.342560 | 7.1:+3519636 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.1:-3519550 | MS.gene050928:CDS |
| GATAATCACTTCTTCCAGAT+TGG | 0.362380 | 7.1:+3519016 | None:intergenic |
| GATGCCATGCGTGCTGCTTA+TGG | 0.370336 | 7.1:-3520380 | MS.gene050928:CDS |
| ATCCTGACAACTCGGAAAAC+TGG | 0.375136 | 7.1:-3519673 | MS.gene050928:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.1:+3520695 | None:intergenic |
| ATATTTCCCAAAGGAGAGTA+TGG | 0.384636 | 7.1:-3519643 | MS.gene050928:CDS |
| GTTTCTAGTTGGTCATGATT+GGG | 0.390166 | 7.1:-3520510 | MS.gene050928:CDS |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.1:+3519598 | None:intergenic |
| TTTGAGAAAACAGGCTTCAC+TGG | 0.397561 | 7.1:-3519541 | MS.gene050928:CDS |
| ATCGCAGAAACCGGGCGAAA+TGG | 0.400152 | 7.1:-3519740 | MS.gene050928:intron |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.1:-3520674 | MS.gene050928:CDS |
| GAAGAAGTGATTATCCAAAA+AGG | 0.403789 | 7.1:-3519008 | MS.gene050928:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.1:-3519600 | MS.gene050928:CDS |
| TCACCATAGCCACGCAGATC+TGG | 0.413961 | 7.1:+3520626 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.1:-3519171 | MS.gene050928:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.1:-3520722 | MS.gene050928:CDS |
| CCCAAAGGAGAGTATGGAAC+TGG | 0.428533 | 7.1:-3519637 | MS.gene050928:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.1:-3519113 | MS.gene050928:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.1:+3520453 | None:intergenic |
| CAAGGAAGATGTGCCCAATC+TGG | 0.434486 | 7.1:-3519030 | MS.gene050928:CDS |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.1:-3520697 | MS.gene050928:CDS |
| ATAATCACTTCTTCCAGATT+GGG | 0.447163 | 7.1:+3519017 | None:intergenic |
| CCAGTTCCATACTCTCCTTT+GGG | 0.449755 | 7.1:+3519637 | None:intergenic |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.1:+3520714 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.1:-3519149 | MS.gene050928:CDS |
| GAGAGCCGAGAGCCGCAATC+TGG | 0.462159 | 7.1:+3520669 | None:intergenic |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.471828 | 7.1:+3519591 | None:intergenic |
| ATTGGGGTGCTATCATTAGT+TGG | 0.480106 | 7.1:-3520493 | MS.gene050928:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.1:+3520722 | None:intergenic |
| GCTCCAGATCTGCGTGGCTA+TGG | 0.482806 | 7.1:-3520629 | MS.gene050928:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.1:-3520755 | MS.gene050928:CDS |
| ATCTGAGCTTCCATTTCGCC+CGG | 0.491141 | 7.1:+3519730 | None:intergenic |
| GTTGCACTTATAGATTTGCT+TGG | 0.491344 | 7.1:-3520545 | MS.gene050928:CDS |
| ATTGCGGCTCTCGGCTCTCT+CGG | 0.495623 | 7.1:-3520665 | MS.gene050928:CDS |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.1:-3520706 | MS.gene050928:CDS |
| GTCGATCAAGTGTTTCTAGT+TGG | 0.504272 | 7.1:-3520521 | MS.gene050928:CDS |
| TCTCCTTTGGGAAATATTGG+AGG | 0.507438 | 7.1:+3519649 | None:intergenic |
| GGGCGAAATGGAAGCTCAGA+TGG | 0.525021 | 7.1:-3519728 | MS.gene050928:CDS |
| ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.1:-3519135 | MS.gene050928:CDS |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7.1:-3519718 | MS.gene050928:CDS |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.1:-3520746 | MS.gene050928:CDS |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.549085 | 7.1:+3520672 | None:intergenic |
| TTATCTTTATCGCAGAAACC+GGG | 0.558593 | 7.1:-3519748 | MS.gene050928:intron |
| AAAAGAAACAGAGAGATGGA+AGG | 0.558993 | 7.1:-3520812 | None:intergenic |
| GTGTAGCTACTAACTGAAGA+TGG | 0.564708 | 7.1:+3520593 | None:intergenic |
| TTTCTAGTTGGTCATGATTG+GGG | 0.567714 | 7.1:-3520509 | MS.gene050928:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.1:+3519110 | None:intergenic |
| TCTTCAGTTAGTAGCTACAC+AGG | 0.571639 | 7.1:-3520590 | MS.gene050928:CDS |
| ATCTCCATAAGCAGCACGCA+TGG | 0.574955 | 7.1:+3520376 | None:intergenic |
| TCATCTTCTGTAAGCCAAGA+GGG | 0.578236 | 7.1:+3519586 | None:intergenic |
| GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.1:-3519057 | MS.gene050928:CDS |
| TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.1:-3519058 | MS.gene050928:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.590336 | 7.1:+3520436 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.1:-3520681 | MS.gene050928:CDS |
| GCCACGCAGATCTGGAGCAA+CGG | 0.594783 | 7.1:+3520634 | None:intergenic |
| AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.1:-3519056 | MS.gene050928:CDS |
| AGCAGCACGCATGGCATCAA+CGG | 0.605048 | 7.1:+3520385 | None:intergenic |
| GTAAGGTGTCAGGAGTATCT+GGG | 0.606766 | 7.1:+3519608 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.1:-3519162 | MS.gene050928:intron |
| AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.1:-3519062 | MS.gene050928:CDS |
| TAACAATGAAGAAGCAGCAG+AGG | 0.620175 | 7.1:-3518973 | MS.gene050928:CDS |
| ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.1:+3519070 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.1:+3520708 | None:intergenic |
| GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.1:-3519147 | MS.gene050928:CDS |
| ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.1:+3519563 | None:intergenic |
| ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.1:-3519059 | MS.gene050928:CDS |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.1:-3519154 | MS.gene050928:CDS |
| GTACACCTCACTAAACATGA+AGG | 0.657206 | 7.1:-3519075 | MS.gene050928:CDS |
| GTCATCTTCTGTAAGCCAAG+AGG | 0.661237 | 7.1:+3519585 | None:intergenic |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.1:-3520792 | MS.gene050928:CDS |
| GGTCCTCCAATATTTCCCAA+AGG | 0.693733 | 7.1:-3519652 | MS.gene050928:CDS |
| GCCGTTGCTCCAGATCTGCG+TGG | 0.702325 | 7.1:-3520635 | MS.gene050928:CDS |
| GCAGATCTGGAGCAACGGCG+CGG | 0.714874 | 7.1:+3520639 | None:intergenic |
| GCAAATCTATAAGTGCAACA+AGG | 0.718881 | 7.1:+3520549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATAATATTTTTTTAAG+GGG | - | chr7.1:3519689-3519708 | MS.gene050928:CDS | 10.0% |
| !!! | GAATCATAATATTTTTTTAA+GGG | - | chr7.1:3519688-3519707 | MS.gene050928:CDS | 10.0% |
| !!! | TGAATCATAATATTTTTTTA+AGG | - | chr7.1:3519687-3519706 | MS.gene050928:CDS | 10.0% |
| !! | AAAAAAAAAAAACACTTGAT+TGG | - | chr7.1:3519535-3519554 | MS.gene050928:CDS | 15.0% |
| !! | TATAGAGATCTATAAAAAAA+AGG | + | chr7.1:3519947-3519966 | None:intergenic | 15.0% |
| !!! | CCAATAATAGTTTTAAAAAA+TGG | + | chr7.1:3520432-3520451 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAAACTATTAT+TGG | - | chr7.1:3520429-3520448 | MS.gene050928:CDS | 15.0% |
| !!! | TCAAGTGTTTTTTTTTTTTA+AGG | + | chr7.1:3519534-3519553 | None:intergenic | 15.0% |
| !! | AATATTATGATTCAACCATA+AGG | + | chr7.1:3519681-3519700 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAGTAAATTAG+GGG | + | chr7.1:3519441-3519460 | None:intergenic | 20.0% |
| !! | GGATTTCTTAAAGTAAATTA+GGG | + | chr7.1:3519442-3519461 | None:intergenic | 20.0% |
| !! | TTATTATATCTGTAGATTTC+AGG | - | chr7.1:3519378-3519397 | MS.gene050928:intron | 20.0% |
| !!! | AAGAAATCCCTAATATTTTA+TGG | - | chr7.1:3519453-3519472 | MS.gene050928:intron | 20.0% |
| !!! | AGAAATCCCTAATATTTTAT+GGG | - | chr7.1:3519454-3519473 | MS.gene050928:intron | 20.0% |
| !!! | TATATGTTGACAATTCTTTT+TGG | - | chr7.1:3520286-3520305 | MS.gene050928:intron | 20.0% |
| ! | AACTTGTCCCATAAAATATT+AGG | + | chr7.1:3519464-3519483 | None:intergenic | 25.0% |
| ! | AATGCATCTTTCATTAGAAT+TGG | + | chr7.1:3520537-3520556 | None:intergenic | 25.0% |
| ! | ACTTGTCCCATAAAATATTA+GGG | + | chr7.1:3519463-3519482 | None:intergenic | 25.0% |
| ! | ATATTTGTGGAAAACAACAA+AGG | + | chr7.1:3520269-3520288 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.1:3520557-3520576 | MS.gene050928:CDS | 25.0% |
| ! | GAATTGTCAACATATATTTG+TGG | + | chr7.1:3520282-3520301 | None:intergenic | 25.0% |
| ! | GGGATTTCTTAAAGTAAATT+AGG | + | chr7.1:3519443-3519462 | None:intergenic | 25.0% |
| ! | TGATTGAATATAACATGTGT+CGG | + | chr7.1:3520406-3520425 | None:intergenic | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.1:3520558-3520577 | MS.gene050928:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.1:3518974-3518993 | MS.gene050928:CDS | 30.0% | |
| AACAACACTCAACACAAAAT+TGG | + | chr7.1:3520477-3520496 | None:intergenic | 30.0% | |
| AATCAAGTGTTAAACACACT+TGG | + | chr7.1:3519618-3519637 | None:intergenic | 30.0% | |
| ATAATCACTTCTTCCAGATT+GGG | + | chr7.1:3520715-3520734 | None:intergenic | 30.0% | |
| ATAGATCTCTATATCATGAG+AGG | - | chr7.1:3519752-3519771 | MS.gene050928:intron | 30.0% | |
| ATCAAGTGTTAAACACACTT+GGG | + | chr7.1:3519617-3519636 | None:intergenic | 30.0% | |
| ATTATCTTTATCGCAGAAAC+CGG | - | chr7.1:3519980-3519999 | MS.gene050928:intron | 30.0% | |
| ATTTGGAGACAAAATAAGCA+AGG | + | chr7.1:3520169-3520188 | None:intergenic | 30.0% | |
| CATACAATACACCAAATGAT+GGG | - | chr7.1:3519873-3519892 | MS.gene050928:intron | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | - | chr7.1:3520624-3520643 | MS.gene050928:CDS | 30.0% | |
| GAAGAAGTGATTATCCAAAA+AGG | - | chr7.1:3520721-3520740 | MS.gene050928:CDS | 30.0% | |
| TCTATAAAAAAAAGGCAACC+CGG | + | chr7.1:3519939-3519958 | None:intergenic | 30.0% | |
| TGAAAAATATCCTGACAACT+CGG | - | chr7.1:3520048-3520067 | MS.gene050928:intron | 30.0% | |
| ! | TACACAGGTTTTCATATAGT+GGG | - | chr7.1:3519154-3519173 | MS.gene050928:CDS | 30.0% |
| AGTCAAAAGAGGAAACCTTA+TGG | - | chr7.1:3519663-3519682 | MS.gene050928:CDS | 35.0% | |
| AGTGATTATCCAAAAAGGAG+TGG | - | chr7.1:3520726-3520745 | MS.gene050928:CDS | 35.0% | |
| AGTTGAGTCTAAGTCAAAAG+AGG | - | chr7.1:3519652-3519671 | MS.gene050928:CDS | 35.0% | |
| ATACTCCTTCATGTTTAGTG+AGG | + | chr7.1:3520662-3520681 | None:intergenic | 35.0% | |
| ATATTTCCCAAAGGAGAGTA+TGG | - | chr7.1:3520086-3520105 | MS.gene050928:intron | 35.0% | |
| ATCTAACACATATCGAACAC+CGG | + | chr7.1:3520375-3520394 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.1:3518983-3519002 | MS.gene050928:CDS | 35.0% | |
| GATAATCACTTCTTCCAGAT+TGG | + | chr7.1:3520716-3520735 | None:intergenic | 35.0% | |
| GCAAATCTATAAGTGCAACA+AGG | + | chr7.1:3519183-3519202 | None:intergenic | 35.0% | |
| GCATACAATACACCAAATGA+TGG | - | chr7.1:3519872-3519891 | MS.gene050928:intron | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | - | chr7.1:3520179-3520198 | MS.gene050928:intron | 35.0% | |
| TATATCATGAGAGGTAACCT+TGG | - | chr7.1:3519761-3519780 | MS.gene050928:intron | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.1:3520622-3520641 | None:intergenic | 35.0% | |
| TTATCTTTATCGCAGAAACC+GGG | - | chr7.1:3519981-3520000 | MS.gene050928:intron | 35.0% | |
| ! | AACATGAAGGAGTATATCCA+TGG | - | chr7.1:3520667-3520686 | MS.gene050928:CDS | 35.0% |
| ! | AATATAACATGTGTCGGTGT+CGG | + | chr7.1:3520400-3520419 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.1:3519280-3519299 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.1:3519279-3519298 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | - | chr7.1:3520630-3520649 | MS.gene050928:CDS | 35.0% |
| ! | CTACACAGGTTTTCATATAG+TGG | - | chr7.1:3519153-3519172 | MS.gene050928:CDS | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr7.1:3520186-3520205 | None:intergenic | 35.0% |
| ! | GTTGCACTTATAGATTTGCT+TGG | - | chr7.1:3519184-3519203 | MS.gene050928:intron | 35.0% |
| ! | TACTCTCCTTTGGGAAATAT+TGG | + | chr7.1:3520086-3520105 | None:intergenic | 35.0% |
| !! | GTTTCTAGTTGGTCATGATT+GGG | - | chr7.1:3519219-3519238 | MS.gene050928:intron | 35.0% |
| !! | TGTTTCTAGTTGGTCATGAT+TGG | - | chr7.1:3519218-3519237 | MS.gene050928:intron | 35.0% |
| !! | TTTCTAGTTGGTCATGATTG+GGG | - | chr7.1:3519220-3519239 | MS.gene050928:intron | 35.0% |
| !!! | CTTTTTTCATGTGCCAGTTT+CGG | + | chr7.1:3519590-3519609 | None:intergenic | 35.0% |
| AAAGCCTCTTGTGTGAAAAC+AGG | - | chr7.1:3519841-3519860 | MS.gene050928:intron | 40.0% | |
| AAGCCTCTTGTGTGAAAACA+GGG | - | chr7.1:3519842-3519861 | MS.gene050928:intron | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.1:3518937-3518956 | MS.gene050928:CDS | 40.0% | |
| ATGGAATGGGGTGAAAATCA+AGG | - | chr7.1:3520594-3520613 | MS.gene050928:CDS | 40.0% | |
| CAACTTTATCAGTTACGCCA+AGG | + | chr7.1:3519781-3519800 | None:intergenic | 40.0% | |
| CACAGAACAGTGGAAGTAAA+TGG | - | chr7.1:3518947-3518966 | MS.gene050928:CDS | 40.0% | |
| CGAAACTGGCACATGAAAAA+AGG | - | chr7.1:3519588-3519607 | MS.gene050928:CDS | 40.0% | |
| GTACACCTCACTAAACATGA+AGG | - | chr7.1:3520654-3520673 | MS.gene050928:CDS | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.1:3520616-3520635 | MS.gene050928:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGA+TGG | + | chr7.1:3519139-3519158 | None:intergenic | 40.0% | |
| GTTGTAGTCATGTGACTGAA+AGG | - | chr7.1:3519797-3519816 | MS.gene050928:intron | 40.0% | |
| TAACAATGAAGAAGCAGCAG+AGG | - | chr7.1:3520756-3520775 | MS.gene050928:CDS | 40.0% | |
| TCATCTTCTGTAAGCCAAGA+GGG | + | chr7.1:3520146-3520165 | None:intergenic | 40.0% | |
| TCTAACACATATCGAACACC+GGG | + | chr7.1:3520374-3520393 | None:intergenic | 40.0% | |
| TCTTCAGTTAGTAGCTACAC+AGG | - | chr7.1:3519139-3519158 | MS.gene050928:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.1:3519296-3519315 | None:intergenic | 40.0% | |
| TTGGGGTTTCTACGCATTAA+TGG | + | chr7.1:3519316-3519335 | None:intergenic | 40.0% | |
| TTTCAGTTTGAAGACATGCC+CGG | - | chr7.1:3520353-3520372 | MS.gene050928:CDS | 40.0% | |
| TTTGAGAAAACAGGCTTCAC+TGG | - | chr7.1:3520188-3520207 | MS.gene050928:intron | 40.0% | |
| ! | ATGAAGGAGTATATCCATGG+TGG | - | chr7.1:3520670-3520689 | MS.gene050928:CDS | 40.0% |
| ! | ATTGGGGTGCTATCATTAGT+TGG | - | chr7.1:3519236-3519255 | MS.gene050928:intron | 40.0% |
| ! | CATCAACGGTCTTGATTTTG+GGG | + | chr7.1:3519333-3519352 | None:intergenic | 40.0% |
| ! | GCATCAACGGTCTTGATTTT+GGG | + | chr7.1:3519334-3519353 | None:intergenic | 40.0% |
| ! | TCTCCTTTGGGAAATATTGG+AGG | + | chr7.1:3520083-3520102 | None:intergenic | 40.0% |
| ! | TGAAGGAGTATATCCATGGT+GGG | - | chr7.1:3520671-3520690 | MS.gene050928:CDS | 40.0% |
| ! | TTACCCTGTTTTCACACAAG+AGG | + | chr7.1:3519848-3519867 | None:intergenic | 40.0% |
| ! | TTGATTTTCACCCCATTCCA+TGG | + | chr7.1:3520595-3520614 | None:intergenic | 40.0% |
| !! | GTCGATCAAGTGTTTCTAGT+TGG | - | chr7.1:3519208-3519227 | MS.gene050928:intron | 40.0% |
| ACTAAAGCTCCTGCATACGA+AGG | + | chr7.1:3519913-3519932 | None:intergenic | 45.0% | |
| AGGGGTTACAGAGAGAAAAG+TGG | + | chr7.1:3519423-3519442 | None:intergenic | 45.0% | |
| ATCCTGACAACTCGGAAAAC+TGG | - | chr7.1:3520056-3520075 | MS.gene050928:intron | 45.0% | |
| CCAGTTCCATACTCTCCTTT+GGG | + | chr7.1:3520095-3520114 | None:intergenic | 45.0% | |
| CTAAAGCTCCTGCATACGAA+GGG | + | chr7.1:3519912-3519931 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+AGG | - | chr7.1:3520077-3520096 | MS.gene050928:intron | 45.0% | |
| GTCATCTTCTGTAAGCCAAG+AGG | + | chr7.1:3520147-3520166 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr7.1:3519803-3519822 | MS.gene050928:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr7.1:3519804-3519823 | MS.gene050928:intron | 45.0% | |
| TCCAGTTCCATACTCTCCTT+TGG | + | chr7.1:3520096-3520115 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.1:3519032-3519051 | MS.gene050928:CDS | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | + | chr7.1:3520141-3520160 | None:intergenic | 45.0% | |
| TTGAACTAGCTCACCGAAAC+TGG | - | chr7.1:3519574-3519593 | MS.gene050928:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.1:3520567-3520586 | MS.gene050928:CDS | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+GGG | - | chr7.1:3520673-3520692 | MS.gene050928:CDS | 45.0% |
| ! | GAAGGAGTATATCCATGGTG+GGG | - | chr7.1:3520672-3520691 | MS.gene050928:CDS | 45.0% |
| ! | GGCATCAACGGTCTTGATTT+TGG | + | chr7.1:3519335-3519354 | None:intergenic | 45.0% |
| ! | TAAAGTGCGCCACTCCTTTT+TGG | + | chr7.1:3520738-3520757 | None:intergenic | 45.0% |
| !! | GTAAGGTGTCAGGAGTATCT+GGG | + | chr7.1:3520124-3520143 | None:intergenic | 45.0% |
| !! | TCACACAAGAGGCTTTTTCC+AGG | + | chr7.1:3519837-3519856 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.1:3519024-3519043 | None:intergenic | 50.0% | |
| AGCTGATGGCACCATGGAAT+GGG | - | chr7.1:3520581-3520600 | MS.gene050928:CDS | 50.0% | |
| ATCTCCATAAGCAGCACGCA+TGG | + | chr7.1:3519356-3519375 | None:intergenic | 50.0% | |
| ATCTGAGCTTCCATTTCGCC+CGG | + | chr7.1:3520002-3520021 | None:intergenic | 50.0% | |
| CAAGGAAGATGTGCCCAATC+TGG | - | chr7.1:3520699-3520718 | MS.gene050928:CDS | 50.0% | |
| CATACGAAGGGTCTGGAAAG+GGG | + | chr7.1:3519900-3519919 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.1:3519007-3519026 | MS.gene050928:CDS | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | - | chr7.1:3520011-3520030 | MS.gene050928:intron | 50.0% | |
| GCATACGAAGGGTCTGGAAA+GGG | + | chr7.1:3519901-3519920 | None:intergenic | 50.0% | |
| TGCATACGAAGGGTCTGGAA+AGG | + | chr7.1:3519902-3519921 | None:intergenic | 50.0% | |
| TGGAAAGGGGTCCCATCATT+TGG | + | chr7.1:3519887-3519906 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.1:3519023-3519042 | MS.gene050928:CDS | 50.0% | |
| TTTCCAGACCCTTCGTATGC+AGG | - | chr7.1:3519901-3519920 | MS.gene050928:intron | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr7.1:3519917-3519936 | MS.gene050928:intron | 50.0% |
| ! | CCCAAAGGAGAGTATGGAAC+TGG | - | chr7.1:3520092-3520111 | MS.gene050928:intron | 50.0% |
| ! | GACCAGTTTTCCGAGTTGTC+AGG | + | chr7.1:3520061-3520080 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGGGGATTCA+AGG | - | chr7.1:3520681-3520700 | MS.gene050928:CDS | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+TGG | + | chr7.1:3520125-3520144 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr7.1:3519816-3519835 | MS.gene050928:intron | 55.0% | |
| AGCAGCACGCATGGCATCAA+CGG | + | chr7.1:3519347-3519366 | None:intergenic | 55.0% | |
| ATCGCAGAAACCGGGCGAAA+TGG | - | chr7.1:3519989-3520008 | MS.gene050928:intron | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.1:3520575-3520594 | MS.gene050928:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.1:3519018-3519037 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.1:3519010-3519029 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | - | chr7.1:3520129-3520148 | MS.gene050928:intron | 55.0% | |
| CTTCCTTGAATCCCCCACCA+TGG | + | chr7.1:3520687-3520706 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.1:3520580-3520599 | MS.gene050928:CDS | 55.0% | |
| GCTGATGGCACCATGGAATG+GGG | - | chr7.1:3520582-3520601 | MS.gene050928:CDS | 55.0% | |
| GGGCGAAATGGAAGCTCAGA+TGG | - | chr7.1:3520001-3520020 | MS.gene050928:intron | 55.0% | |
| TCACCATAGCCACGCAGATC+TGG | + | chr7.1:3519106-3519125 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr7.1:3520134-3520153 | None:intergenic | 55.0% |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr7.1:3519918-3519937 | MS.gene050928:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.1:3519037-3519056 | None:intergenic | 55.0% |
| !! | GATGCCATGCGTGCTGCTTA+TGG | - | chr7.1:3519349-3519368 | MS.gene050928:intron | 55.0% |
| ATTGCGGCTCTCGGCTCTCT+CGG | - | chr7.1:3519064-3519083 | MS.gene050928:CDS | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.1:3519048-3519067 | MS.gene050928:CDS | 60.0% | |
| GCTCCAGATCTGCGTGGCTA+TGG | - | chr7.1:3519100-3519119 | MS.gene050928:CDS | 60.0% | |
| GCTCCTGCATACGAAGGGTC+TGG | + | chr7.1:3519907-3519926 | None:intergenic | 60.0% | |
| ! | GCCACGCAGATCTGGAGCAA+CGG | + | chr7.1:3519098-3519117 | None:intergenic | 60.0% |
| AGCCGAGAGCCGCAATCTGG+TGG | + | chr7.1:3519060-3519079 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | - | chr7.1:3519055-3519074 | MS.gene050928:CDS | 65.0% | |
| GAGAGCCGAGAGCCGCAATC+TGG | + | chr7.1:3519063-3519082 | None:intergenic | 65.0% | |
| GCCGTTGCTCCAGATCTGCG+TGG | - | chr7.1:3519094-3519113 | MS.gene050928:CDS | 65.0% | |
| ! | GCAGATCTGGAGCAACGGCG+CGG | + | chr7.1:3519093-3519112 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3518932 | 3520819 | 3518932 | ID=MS.gene050928 |
| chr7.1 | mRNA | 3518932 | 3520819 | 3518932 | ID=MS.gene050928.t1;Parent=MS.gene050928 |
| chr7.1 | exon | 3520352 | 3520819 | 3520352 | ID=MS.gene050928.t1.exon1;Parent=MS.gene050928.t1 |
| chr7.1 | CDS | 3520352 | 3520819 | 3520352 | ID=cds.MS.gene050928.t1;Parent=MS.gene050928.t1 |
| chr7.1 | exon | 3519511 | 3519755 | 3519511 | ID=MS.gene050928.t1.exon2;Parent=MS.gene050928.t1 |
| chr7.1 | CDS | 3519511 | 3519755 | 3519511 | ID=cds.MS.gene050928.t1;Parent=MS.gene050928.t1 |
| chr7.1 | exon | 3518932 | 3519178 | 3518932 | ID=MS.gene050928.t1.exon3;Parent=MS.gene050928.t1 |
| chr7.1 | CDS | 3518932 | 3519178 | 3518932 | ID=cds.MS.gene050928.t1;Parent=MS.gene050928.t1 |
| Gene Sequence |
| Protein sequence |
