Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072521.t1 | XP_024625624.1 | 95.6 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 2.50E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072521.t1 | I6YGS0 | 35.6 | 320 | 186 | 7 | 7 | 316 | 7 | 316 | 3.0e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072521.t1 | A0A072U5U0 | 95.6 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 1.8e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050929 | MS.gene072521 | 0.900783 | 5.19E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012063 | MS.gene072521 | PPI |
| MS.gene76453 | MS.gene072521 | PPI |
| MS.gene025707 | MS.gene072521 | PPI |
| MS.gene035373 | MS.gene072521 | PPI |
| MS.gene071500 | MS.gene072521 | PPI |
| MS.gene22955 | MS.gene072521 | PPI |
| MS.gene035371 | MS.gene072521 | PPI |
| MS.gene77823 | MS.gene072521 | PPI |
| MS.gene035367 | MS.gene072521 | PPI |
| MS.gene041604 | MS.gene072521 | PPI |
| MS.gene071504 | MS.gene072521 | PPI |
| MS.gene071502 | MS.gene072521 | PPI |
| MS.gene066360 | MS.gene072521 | PPI |
| MS.gene89620 | MS.gene072521 | PPI |
| MS.gene07001 | MS.gene072521 | PPI |
| MS.gene066361 | MS.gene072521 | PPI |
| MS.gene035369 | MS.gene072521 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072521.t1 | MTR_7g112615 | 95.611 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 0.0 | 639 |
| MS.gene072521.t1 | MTR_7g113050 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 617 |
| MS.gene072521.t1 | MTR_7g113020 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene072521.t1 | MTR_7g113030 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene072521.t1 | MTR_7g112620 | 89.655 | 319 | 33 | 0 | 1 | 319 | 1 | 319 | 0.0 | 602 |
| MS.gene072521.t1 | MTR_7g112960 | 77.116 | 319 | 73 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene072521.t1 | MTR_7g112963 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MS.gene072521.t1 | MTR_7g112970 | 75.235 | 319 | 76 | 2 | 1 | 319 | 1 | 316 | 0.0 | 511 |
| MS.gene072521.t1 | MTR_4g005160 | 72.136 | 323 | 85 | 3 | 1 | 319 | 1 | 322 | 0.0 | 503 |
| MS.gene072521.t1 | MTR_7g112615 | 94.118 | 238 | 14 | 0 | 1 | 238 | 1 | 238 | 4.40e-171 | 474 |
| MS.gene072521.t1 | MTR_7g113050 | 90.756 | 238 | 22 | 0 | 1 | 238 | 1 | 238 | 1.38e-165 | 460 |
| MS.gene072521.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 1.93e-148 | 430 |
| MS.gene072521.t1 | MTR_4g120240 | 61.371 | 321 | 120 | 3 | 1 | 319 | 37 | 355 | 2.10e-146 | 416 |
| MS.gene072521.t1 | MTR_7g108825 | 60.502 | 319 | 124 | 2 | 1 | 319 | 1 | 317 | 2.48e-141 | 402 |
| MS.gene072521.t1 | MTR_7g112615 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 1.99e-109 | 316 |
| MS.gene072521.t1 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 6.69e-106 | 312 |
| MS.gene072521.t1 | MTR_7g108825 | 57.563 | 238 | 99 | 2 | 1 | 238 | 1 | 236 | 1.09e-95 | 283 |
| MS.gene072521.t1 | MTR_7g112910 | 60.241 | 249 | 44 | 5 | 72 | 319 | 1 | 195 | 3.88e-92 | 272 |
| MS.gene072521.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.88e-85 | 255 |
| MS.gene072521.t1 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 6.74e-80 | 243 |
| MS.gene072521.t1 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 3.18e-68 | 216 |
| MS.gene072521.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 3.36e-64 | 205 |
| MS.gene072521.t1 | MTR_4g089060 | 36.449 | 321 | 189 | 6 | 1 | 318 | 1 | 309 | 4.52e-64 | 205 |
| MS.gene072521.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 1.17e-60 | 196 |
| MS.gene072521.t1 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 1.52e-59 | 187 |
| MS.gene072521.t1 | MTR_4g089060 | 33.908 | 348 | 188 | 7 | 1 | 318 | 1 | 336 | 5.35e-59 | 192 |
| MS.gene072521.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 6.44e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072521.t1 | AT3G05600 | 61.111 | 324 | 121 | 4 | 1 | 319 | 1 | 324 | 2.31e-152 | 431 |
| MS.gene072521.t1 | AT4G02340 | 57.944 | 321 | 128 | 4 | 1 | 319 | 1 | 316 | 2.46e-139 | 397 |
| MS.gene072521.t1 | AT2G26740 | 62.733 | 322 | 113 | 4 | 4 | 319 | 1 | 321 | 4.97e-134 | 384 |
| MS.gene072521.t1 | AT2G26750 | 60.125 | 321 | 122 | 4 | 4 | 319 | 1 | 320 | 1.57e-127 | 367 |
| MS.gene072521.t1 | AT4G15960 | 52.308 | 325 | 148 | 3 | 1 | 319 | 51 | 374 | 1.45e-124 | 362 |
| MS.gene072521.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 2.57e-111 | 323 |
| MS.gene072521.t1 | AT4G15955 | 49.387 | 326 | 127 | 4 | 5 | 319 | 6 | 304 | 7.70e-109 | 319 |
| MS.gene072521.t1 | AT3G51000 | 45.872 | 327 | 156 | 6 | 3 | 319 | 4 | 319 | 2.18e-103 | 306 |
| MS.gene072521.t1 | AT4G15955 | 56.897 | 174 | 65 | 2 | 5 | 168 | 6 | 179 | 3.68e-68 | 211 |
| MS.gene072521.t1 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 5.14e-65 | 203 |
Find 85 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:+4072795 | None:intergenic |
| CCCCTGACAAATTGCCTTCT+TGG | 0.174429 | 7.4:-4072199 | MS.gene072521:CDS |
| TTATTATATCTCTAGATTTC+AGG | 0.211379 | 7.4:-4072694 | MS.gene072521:intron |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7.4:-4071577 | MS.gene072521:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7.4:+4072759 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7.4:+4072826 | None:intergenic |
| GGCAATTTGTCAGGGGTATC+CGG | 0.299751 | 7.4:+4072206 | None:intergenic |
| TACTCTCCCTTTGGAAGTAT+TGG | 0.334854 | 7.4:+4072245 | None:intergenic |
| TTTGAGAAAACGGGCTTTGT+TGG | 0.335209 | 7.4:-4072140 | MS.gene072521:CDS |
| ATACTTCCAAAGGGAGAGTA+TGG | 0.337259 | 7.4:-4072242 | MS.gene072521:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7.4:-4072840 | MS.gene072521:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7.4:-4072741 | MS.gene072521:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7.4:-4072854 | MS.gene072521:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7.4:-4072723 | MS.gene072521:CDS |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.365676 | 7.4:-4071555 | MS.gene072521:CDS |
| GTTTCCAAATTTGAGAAAAC+GGG | 0.368898 | 7.4:-4072149 | MS.gene072521:CDS |
| ACAATCACTTCTTCCAAATT+CGG | 0.378669 | 7.4:+4071564 | None:intergenic |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:+4073038 | None:intergenic |
| TGTTTCCAAATTTGAGAAAA+CGG | 0.384535 | 7.4:-4072150 | MS.gene072521:CDS |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7.4:-4073017 | MS.gene072521:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7.4:-4072853 | MS.gene072521:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7.4:+4072827 | None:intergenic |
| AGCCAAGAAGGCAATTTGTC+AGG | 0.405805 | 7.4:+4072197 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.4:+4072969 | None:intergenic |
| TGGATATACTCCTTCACCTT+TGG | 0.407549 | 7.4:+4071612 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.4:-4071718 | MS.gene072521:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.4:-4073065 | MS.gene072521:CDS |
| GAAGTATTGGAGGACCAGTT+TGG | 0.425771 | 7.4:+4072258 | None:intergenic |
| ATCCTCACAACTCGCCAAAC+TGG | 0.430315 | 7.4:-4072272 | MS.gene072521:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.4:-4071660 | MS.gene072521:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:+4072796 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:-4073040 | MS.gene072521:CDS |
| CCAGTCCCATACTCTCCCTT+TGG | 0.435883 | 7.4:+4072236 | None:intergenic |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7.4:+4073012 | None:intergenic |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.4:+4073057 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7.4:-4072888 | MS.gene072521:CDS |
| CACAGAAAAGTTGAAGTGAA+TGG | 0.467750 | 7.4:-4073125 | MS.gene072521:CDS |
| TATCCATGGTGGAGGGTTCA+AGG | 0.477350 | 7.4:-4071595 | MS.gene072521:CDS |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7.4:-4073008 | MS.gene072521:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.4:+4073065 | None:intergenic |
| TCTCCCTTTGGAAGTATTGG+AGG | 0.487060 | 7.4:+4072248 | None:intergenic |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7.4:-4073098 | MS.gene072521:CDS |
| GCAATTTGTCAGGGGTATCC+GGG | 0.490025 | 7.4:+4072207 | None:intergenic |
| TCATCTTCTGTGAGCCAAGA+AGG | 0.501938 | 7.4:+4072185 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:-4073049 | MS.gene072521:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.4:-4072972 | MS.gene072521:CDS |
| GAGAAAACGGGCTTTGTTGG+AGG | 0.506662 | 7.4:-4072137 | MS.gene072521:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.4:-4072978 | MS.gene072521:CDS |
| GAAGTTCAGATGGCTGAAGT+TGG | 0.532879 | 7.4:-4072317 | MS.gene072521:CDS |
| GAAATTCATTACAGGTGACT+TGG | 0.543660 | 7.4:-4071652 | MS.gene072521:CDS |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:-4073089 | MS.gene072521:CDS |
| AAGGAGTATATCCATGGTGG+AGG | 0.549978 | 7.4:-4071603 | MS.gene072521:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7.4:-4072955 | MS.gene072521:CDS |
| GCCAAGAAGGCAATTTGTCA+GGG | 0.555944 | 7.4:+4072198 | None:intergenic |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7.4:+4072936 | None:intergenic |
| TGGTCCTCCAATACTTCCAA+AGG | 0.564157 | 7.4:-4072252 | MS.gene072521:CDS |
| CCAAAGGGAGAGTATGGGAC+TGG | 0.568658 | 7.4:-4072236 | MS.gene072521:CDS |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7.4:+4073015 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 7.4:-4071696 | MS.gene072521:CDS |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7.4:-4072836 | MS.gene072521:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7.4:+4072944 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7.4:+4072779 | None:intergenic |
| ATACTCCTTCACCTTTGGTG+AGG | 0.584740 | 7.4:+4071617 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.591992 | 7.4:+4071657 | None:intergenic |
| GGTCCTCCAATACTTCCAAA+GGG | 0.592627 | 7.4:-4072251 | MS.gene072521:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.596236 | 7.4:-4071682 | MS.gene072521:CDS |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7.4:-4072852 | MS.gene072521:CDS |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.4:-4071709 | MS.gene072521:intron |
| CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7.4:-4071520 | MS.gene072521:CDS |
| GACCAGTTTGGCGAGTTGTG+AGG | 0.620536 | 7.4:+4072270 | None:intergenic |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7.4:-4072883 | MS.gene072521:CDS |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:+4073051 | None:intergenic |
| TACTTCCAAAGGGAGAGTAT+GGG | 0.628244 | 7.4:-4072241 | MS.gene072521:CDS |
| AAGGTGAAGGAGTATATCCA+TGG | 0.634923 | 7.4:-4071609 | MS.gene072521:CDS |
| TTATCCGTATCACAGGAACC+GGG | 0.636418 | 7.4:-4072347 | MS.gene072521:intron |
| ATACACCTCACCAAAGGTGA+AGG | 0.642917 | 7.4:-4071622 | MS.gene072521:CDS |
| AAACGACAGATAGAGATGGA+AGG | 0.647201 | 7.4:-4073155 | None:intergenic |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.4:-4071701 | MS.gene072521:CDS |
| CATTGTATACACCTCACCAA+AGG | 0.655794 | 7.4:-4071628 | MS.gene072521:CDS |
| CTTCCTTGAACCCTCCACCA+TGG | 0.658760 | 7.4:+4071592 | None:intergenic |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.4:+4072982 | None:intergenic |
| GTATGGGACTGGATTCAACC+CGG | 0.688961 | 7.4:-4072225 | MS.gene072521:CDS |
| CCAAGAAGGCAATTTGTCAG+GGG | 0.688969 | 7.4:+4072199 | None:intergenic |
| AGGAGTATATCCATGGTGGA+GGG | 0.690032 | 7.4:-4071602 | MS.gene072521:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7.4:-4071606 | MS.gene072521:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTAAAAAAAAAAA+TGG | + | chr7.4:4072773-4072792 | None:intergenic | 0.0% |
| !! | GAGTAATATTAAATATGTTA+GGG | - | chr7.4:4072188-4072207 | MS.gene072521:CDS | 15.0% |
| !!! | TCTATATTTACATTTCTTTT+CGG | - | chr7.4:4072577-4072596 | MS.gene072521:intron | 15.0% |
| !! | ATGAATTATTGTTCATTCTA+AGG | - | chr7.4:4072166-4072185 | MS.gene072521:CDS | 20.0% |
| !! | CAACTTTAGTATTAACATAT+AGG | + | chr7.4:4071999-4072018 | None:intergenic | 20.0% |
| !! | GAAATGTAAATATAGATTTG+TGG | + | chr7.4:4072573-4072592 | None:intergenic | 20.0% |
| !! | GGAGTAATATTAAATATGTT+AGG | - | chr7.4:4072187-4072206 | MS.gene072521:CDS | 20.0% |
| !! | TTATTATATCTCTAGATTTC+AGG | - | chr7.4:4071925-4071944 | MS.gene072521:intron | 20.0% |
| !!! | CTATATTTACATTTCTTTTC+GGG | - | chr7.4:4072578-4072597 | MS.gene072521:intron | 20.0% |
| !!! | CTTGATATTTTAAGATGATA+CGG | + | chr7.4:4071961-4071980 | None:intergenic | 20.0% |
| ! | AATAGAGCCTAAATCAAAAT+CGG | - | chr7.4:4072091-4072110 | MS.gene072521:intron | 25.0% |
| ! | AATCAAAATCGGAACATTTA+TGG | - | chr7.4:4072102-4072121 | MS.gene072521:intron | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.4:4072900-4072919 | MS.gene072521:CDS | 25.0% |
| ! | CTAAATGTAATATGTGATTG+TGG | + | chr7.4:4072744-4072763 | None:intergenic | 25.0% |
| ! | TATTTATACCTGCAATATGA+CGG | + | chr7.4:4072219-4072238 | None:intergenic | 25.0% |
| ! | TGTCAAATATCAACACATAT+CGG | + | chr7.4:4072685-4072704 | None:intergenic | 25.0% |
| ! | TGTTTCCAAATTTGAGAAAA+CGG | - | chr7.4:4072469-4072488 | MS.gene072521:intron | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.4:4072901-4072920 | MS.gene072521:CDS | 25.0% |
| !! | TCATGTTTTATATTTGTGTC+AGG | - | chr7.4:4072815-4072834 | MS.gene072521:CDS | 25.0% |
| !!! | AAATGTTCCGATTTTGATTT+AGG | + | chr7.4:4072101-4072120 | None:intergenic | 25.0% |
| !!! | TATTTTAAGATGATACGGAA+AGG | + | chr7.4:4071956-4071975 | None:intergenic | 25.0% |
| !!! | TGTAATATTTTGATTCTCTG+TGG | - | chr7.4:4072531-4072550 | MS.gene072521:intron | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | - | chr7.4:4071521-4071540 | MS.gene072521:CDS | 30.0% | |
| AATGTCGTCCCAAAAAAAAA+AGG | + | chr7.4:4072717-4072736 | None:intergenic | 30.0% | |
| ACAATCACTTCTTCCAAATT+CGG | + | chr7.4:4073058-4073077 | None:intergenic | 30.0% | |
| ATTTATACCTGCAATATGAC+GGG | + | chr7.4:4072218-4072237 | None:intergenic | 30.0% | |
| GTTTCCAAATTTGAGAAAAC+GGG | - | chr7.4:4072470-4072489 | MS.gene072521:intron | 30.0% | |
| TATCTATGAGTCATACTCAA+TGG | - | chr7.4:4072044-4072063 | MS.gene072521:intron | 30.0% | |
| TGACTCATAGATATAGTTCA+AGG | + | chr7.4:4072037-4072056 | None:intergenic | 30.0% | |
| !! | CATCAACAGTTCTGATTTTA+GGG | + | chr7.4:4071880-4071899 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTATCCGTATCAC+AGG | - | chr7.4:4072265-4072284 | MS.gene072521:CDS | 30.0% |
| AGATCACTCTTTATGAACCA+CGG | + | chr7.4:4072858-4072877 | None:intergenic | 35.0% | |
| ATGGAATGGAGTGAAAATCA+AGG | - | chr7.4:4072937-4072956 | MS.gene072521:CDS | 35.0% | |
| ATTCTTGATTGAGTCATGCT+GGG | + | chr7.4:4072148-4072167 | None:intergenic | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | - | chr7.4:4071530-4071549 | MS.gene072521:CDS | 35.0% | |
| CACAGAAAAGTTGAAGTGAA+TGG | - | chr7.4:4071494-4071513 | MS.gene072521:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | - | chr7.4:4071878-4071897 | MS.gene072521:intron | 35.0% | |
| GAAATTCATTACAGGTGACT+TGG | - | chr7.4:4072967-4072986 | MS.gene072521:CDS | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | - | chr7.4:4073064-4073083 | MS.gene072521:CDS | 35.0% | |
| GATTTGTGGAAAACAATCAG+AGG | + | chr7.4:4072559-4072578 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | + | chr7.4:4071795-4071814 | None:intergenic | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | - | chr7.4:4071766-4071785 | MS.gene072521:intron | 35.0% | |
| TATCAACACATATCGGACAT+TGG | + | chr7.4:4072678-4072697 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.4:4072965-4072984 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | + | chr7.4:4071796-4071815 | None:intergenic | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | - | chr7.4:4071765-4071784 | MS.gene072521:intron | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | - | chr7.4:4071767-4071786 | MS.gene072521:intron | 35.0% | |
| ! | AAAGCCCGTTTTCTCAAATT+TGG | + | chr7.4:4072477-4072496 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.4:4071827-4071846 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.4:4071826-4071845 | None:intergenic | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | - | chr7.4:4071701-4071720 | MS.gene072521:CDS | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | + | chr7.4:4072938-4072957 | None:intergenic | 35.0% |
| !! | ATCTGAACTTCCATTTTTCC+CGG | + | chr7.4:4072293-4072312 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | + | chr7.4:4071881-4071900 | None:intergenic | 35.0% |
| !!! | TGACACCGCCTTTTTTTTTT+GGG | - | chr7.4:4072706-4072725 | MS.gene072521:CDS | 35.0% |
| !!! | TTGACACCGCCTTTTTTTTT+TGG | - | chr7.4:4072705-4072724 | MS.gene072521:CDS | 35.0% |
| AGTGATTGTCCAAAAAGGAG+TGG | - | chr7.4:4073069-4073088 | MS.gene072521:CDS | 40.0% | |
| ATACTTCCAAAGGGAGAGTA+TGG | - | chr7.4:4072377-4072396 | MS.gene072521:intron | 40.0% | |
| CATTCTTGATTGAGTCATGC+TGG | + | chr7.4:4072149-4072168 | None:intergenic | 40.0% | |
| CATTGTATACACCTCACCAA+AGG | - | chr7.4:4072991-4073010 | MS.gene072521:CDS | 40.0% | |
| GGGAAAAATGGAAGTTCAGA+TGG | - | chr7.4:4072292-4072311 | MS.gene072521:CDS | 40.0% | |
| GTCGTCCCAAAAAAAAAAGG+CGG | + | chr7.4:4072714-4072733 | None:intergenic | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.4:4072959-4072978 | MS.gene072521:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.4:4071843-4071862 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACCTT+TGG | + | chr7.4:4073010-4073029 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | + | chr7.4:4071863-4071882 | None:intergenic | 40.0% | |
| TTTATCCGTATCACAGGAAC+CGG | - | chr7.4:4072271-4072290 | MS.gene072521:CDS | 40.0% | |
| TTTATGAACCACGGAGACAT+TGG | + | chr7.4:4072849-4072868 | None:intergenic | 40.0% | |
| ! | AAGGTGAAGGAGTATATCCA+TGG | - | chr7.4:4073010-4073029 | MS.gene072521:CDS | 40.0% |
| ! | TACTCTCCCTTTGGAAGTAT+TGG | + | chr7.4:4072377-4072396 | None:intergenic | 40.0% |
| ! | TACTTCCAAAGGGAGAGTAT+GGG | - | chr7.4:4072378-4072397 | MS.gene072521:intron | 40.0% |
| ! | TTTGAGAAAACGGGCTTTGT+TGG | - | chr7.4:4072479-4072498 | MS.gene072521:intron | 40.0% |
| AGCCAAGAAGGCAATTTGTC+AGG | + | chr7.4:4072425-4072444 | None:intergenic | 45.0% | |
| ATACACCTCACCAAAGGTGA+AGG | - | chr7.4:4072997-4073016 | MS.gene072521:CDS | 45.0% | |
| ATACTCCTTCACCTTTGGTG+AGG | + | chr7.4:4073005-4073024 | None:intergenic | 45.0% | |
| ATCACAGGAACCGGGAAAAA+TGG | - | chr7.4:4072280-4072299 | MS.gene072521:CDS | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | - | chr7.4:4073099-4073118 | MS.gene072521:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | - | chr7.4:4073042-4073061 | MS.gene072521:CDS | 45.0% | |
| CCAAGAAGGCAATTTGTCAG+GGG | + | chr7.4:4072423-4072442 | None:intergenic | 45.0% | |
| GAAGTTCAGATGGCTGAAGT+TGG | - | chr7.4:4072302-4072321 | MS.gene072521:CDS | 45.0% | |
| GCCAAGAAGGCAATTTGTCA+GGG | + | chr7.4:4072424-4072443 | None:intergenic | 45.0% | |
| GGTCCTCCAATACTTCCAAA+GGG | - | chr7.4:4072368-4072387 | MS.gene072521:intron | 45.0% | |
| TCATCTTCTGTGAGCCAAGA+AGG | + | chr7.4:4072437-4072456 | None:intergenic | 45.0% | |
| TGGTCCTCCAATACTTCCAA+AGG | - | chr7.4:4072367-4072386 | MS.gene072521:intron | 45.0% | |
| TTATCCGTATCACAGGAACC+GGG | - | chr7.4:4072272-4072291 | MS.gene072521:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.4:4071579-4071598 | MS.gene072521:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.4:4072910-4072929 | MS.gene072521:CDS | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+AGG | - | chr7.4:4073016-4073035 | MS.gene072521:CDS | 45.0% |
| ! | AGGAGTATATCCATGGTGGA+GGG | - | chr7.4:4073017-4073036 | MS.gene072521:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | - | chr7.4:4073013-4073032 | MS.gene072521:CDS | 45.0% |
| ! | TGAAGTGAGCCACTCCTTTT+TGG | + | chr7.4:4073081-4073100 | None:intergenic | 45.0% |
| ! | TTTTCCCGGTTCCTGTGATA+CGG | + | chr7.4:4072279-4072298 | None:intergenic | 45.0% |
| !! | GAAGTATTGGAGGACCAGTT+TGG | + | chr7.4:4072364-4072383 | None:intergenic | 45.0% |
| !! | TCTCCCTTTGGAAGTATTGG+AGG | + | chr7.4:4072374-4072393 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.4:4071571-4071590 | None:intergenic | 50.0% | |
| ATCCTCACAACTCGCCAAAC+TGG | - | chr7.4:4072347-4072366 | MS.gene072521:intron | 50.0% | |
| CCCCTGACAAATTGCCTTCT+TGG | - | chr7.4:4072420-4072439 | MS.gene072521:intron | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.4:4071554-4071573 | MS.gene072521:CDS | 50.0% | |
| GTATGGGACTGGATTCAACC+CGG | - | chr7.4:4072394-4072413 | MS.gene072521:intron | 50.0% | |
| TGTTGTGTCCAATGTCTCCG+TGG | - | chr7.4:4072838-4072857 | MS.gene072521:CDS | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.4:4071570-4071589 | MS.gene072521:CDS | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | - | chr7.4:4071783-4071802 | MS.gene072521:intron | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | - | chr7.4:4071779-4071798 | MS.gene072521:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.4:4071640-4071659 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGAGGGTTCA+AGG | - | chr7.4:4073024-4073043 | MS.gene072521:CDS | 50.0% |
| !! | GAGAAAACGGGCTTTGTTGG+AGG | - | chr7.4:4072482-4072501 | MS.gene072521:intron | 50.0% |
| !! | GCAATTTGTCAGGGGTATCC+GGG | + | chr7.4:4072415-4072434 | None:intergenic | 50.0% |
| !! | GGCAATTTGTCAGGGGTATC+CGG | + | chr7.4:4072416-4072435 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | - | chr7.4:4071731-4071750 | MS.gene072521:intron | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | - | chr7.4:4071736-4071755 | MS.gene072521:intron | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | - | chr7.4:4071611-4071630 | MS.gene072521:CDS | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.4:4072918-4072937 | MS.gene072521:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.4:4071565-4071584 | None:intergenic | 55.0% | |
| CCAGTCCCATACTCTCCCTT+TGG | + | chr7.4:4072386-4072405 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.4:4071557-4071576 | None:intergenic | 55.0% | |
| CTTCCTTGAACCCTCCACCA+TGG | + | chr7.4:4073030-4073049 | None:intergenic | 55.0% | |
| GACCAGTTTGGCGAGTTGTG+AGG | + | chr7.4:4072352-4072371 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.4:4072923-4072942 | MS.gene072521:CDS | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | + | chr7.4:4071686-4071705 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | + | chr7.4:4071678-4071697 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.4:4071647-4071666 | MS.gene072521:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.4:4071641-4071660 | MS.gene072521:CDS | 55.0% | |
| GGGTCTACCCGTCATATTGC+AGG | - | chr7.4:4072208-4072227 | MS.gene072521:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.4:4071653-4071672 | None:intergenic | 55.0% | |
| ! | CCAAAGGGAGAGTATGGGAC+TGG | - | chr7.4:4072383-4072402 | MS.gene072521:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.4:4071584-4071603 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | - | chr7.4:4071896-4071915 | MS.gene072521:intron | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | + | chr7.4:4071607-4071626 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | - | chr7.4:4071602-4071621 | MS.gene072521:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | - | chr7.4:4071664-4071683 | MS.gene072521:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | + | chr7.4:4071610-4071629 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4071479 | 4073162 | 4071479 | ID=MS.gene072521 |
| chr7.4 | mRNA | 4071479 | 4073162 | 4071479 | ID=MS.gene072521.t1;Parent=MS.gene072521 |
| chr7.4 | exon | 4072695 | 4073162 | 4072695 | ID=MS.gene072521.t1.exon1;Parent=MS.gene072521.t1 |
| chr7.4 | CDS | 4072695 | 4073162 | 4072695 | ID=cds.MS.gene072521.t1;Parent=MS.gene072521.t1 |
| chr7.4 | exon | 4072110 | 4072354 | 4072110 | ID=MS.gene072521.t1.exon2;Parent=MS.gene072521.t1 |
| chr7.4 | CDS | 4072110 | 4072354 | 4072110 | ID=cds.MS.gene072521.t1;Parent=MS.gene072521.t1 |
| chr7.4 | exon | 4071479 | 4071725 | 4071479 | ID=MS.gene072521.t1.exon3;Parent=MS.gene072521.t1 |
| chr7.4 | CDS | 4071479 | 4071725 | 4071479 | ID=cds.MS.gene072521.t1;Parent=MS.gene072521.t1 |
| Gene Sequence |
| Protein sequence |
