Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050929.t1 | XP_024625624.1 | 95.6 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 2.50E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050929.t1 | I6YGS0 | 35.6 | 320 | 186 | 7 | 7 | 316 | 7 | 316 | 3.0e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050929.t1 | A0A072U5U0 | 95.6 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 1.8e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050929 | MS.gene072521 | 0.900783 | 5.19E-78 | -1.69E-46 |
| MS.gene050929 | MS.gene37324 | 0.91482 | 1.22E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050929 | MS.gene07001 | PPI |
| MS.gene071504 | MS.gene050929 | PPI |
| MS.gene012063 | MS.gene050929 | PPI |
| MS.gene071502 | MS.gene050929 | PPI |
| MS.gene066360 | MS.gene050929 | PPI |
| MS.gene89620 | MS.gene050929 | PPI |
| MS.gene050929 | MS.gene066361 | PPI |
| MS.gene050929 | MS.gene035371 | PPI |
| MS.gene035369 | MS.gene050929 | PPI |
| MS.gene76453 | MS.gene050929 | PPI |
| MS.gene025707 | MS.gene050929 | PPI |
| MS.gene050929 | MS.gene22955 | PPI |
| MS.gene035373 | MS.gene050929 | PPI |
| MS.gene050929 | MS.gene071500 | PPI |
| MS.gene050929 | MS.gene041604 | PPI |
| MS.gene77823 | MS.gene050929 | PPI |
| MS.gene035367 | MS.gene050929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050929.t1 | MTR_7g112615 | 95.611 | 319 | 14 | 0 | 1 | 319 | 1 | 319 | 0.0 | 639 |
| MS.gene050929.t1 | MTR_7g113050 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 617 |
| MS.gene050929.t1 | MTR_7g113020 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene050929.t1 | MTR_7g113030 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene050929.t1 | MTR_7g112620 | 89.655 | 319 | 33 | 0 | 1 | 319 | 1 | 319 | 0.0 | 602 |
| MS.gene050929.t1 | MTR_7g112960 | 77.116 | 319 | 73 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene050929.t1 | MTR_7g112963 | 76.803 | 319 | 74 | 0 | 1 | 319 | 1 | 319 | 0.0 | 514 |
| MS.gene050929.t1 | MTR_7g112970 | 75.235 | 319 | 76 | 2 | 1 | 319 | 1 | 316 | 0.0 | 511 |
| MS.gene050929.t1 | MTR_4g005160 | 72.136 | 323 | 85 | 3 | 1 | 319 | 1 | 322 | 0.0 | 503 |
| MS.gene050929.t1 | MTR_7g112615 | 94.118 | 238 | 14 | 0 | 1 | 238 | 1 | 238 | 4.40e-171 | 474 |
| MS.gene050929.t1 | MTR_7g113050 | 90.756 | 238 | 22 | 0 | 1 | 238 | 1 | 238 | 1.38e-165 | 460 |
| MS.gene050929.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 1.93e-148 | 430 |
| MS.gene050929.t1 | MTR_4g120240 | 61.371 | 321 | 120 | 3 | 1 | 319 | 37 | 355 | 2.10e-146 | 416 |
| MS.gene050929.t1 | MTR_7g108825 | 60.502 | 319 | 124 | 2 | 1 | 319 | 1 | 317 | 2.48e-141 | 402 |
| MS.gene050929.t1 | MTR_7g112615 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 1.99e-109 | 316 |
| MS.gene050929.t1 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 6.69e-106 | 312 |
| MS.gene050929.t1 | MTR_7g108825 | 57.563 | 238 | 99 | 2 | 1 | 238 | 1 | 236 | 1.09e-95 | 283 |
| MS.gene050929.t1 | MTR_7g112910 | 60.241 | 249 | 44 | 5 | 72 | 319 | 1 | 195 | 3.88e-92 | 272 |
| MS.gene050929.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.88e-85 | 255 |
| MS.gene050929.t1 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 6.74e-80 | 243 |
| MS.gene050929.t1 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 3.18e-68 | 216 |
| MS.gene050929.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 3.36e-64 | 205 |
| MS.gene050929.t1 | MTR_4g089060 | 36.449 | 321 | 189 | 6 | 1 | 318 | 1 | 309 | 4.52e-64 | 205 |
| MS.gene050929.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 1.17e-60 | 196 |
| MS.gene050929.t1 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 1.52e-59 | 187 |
| MS.gene050929.t1 | MTR_4g089060 | 33.908 | 348 | 188 | 7 | 1 | 318 | 1 | 336 | 5.35e-59 | 192 |
| MS.gene050929.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 6.44e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050929.t1 | AT3G05600 | 61.111 | 324 | 121 | 4 | 1 | 319 | 1 | 324 | 2.31e-152 | 431 |
| MS.gene050929.t1 | AT4G02340 | 57.944 | 321 | 128 | 4 | 1 | 319 | 1 | 316 | 2.46e-139 | 397 |
| MS.gene050929.t1 | AT2G26740 | 62.733 | 322 | 113 | 4 | 4 | 319 | 1 | 321 | 4.97e-134 | 384 |
| MS.gene050929.t1 | AT2G26750 | 60.125 | 321 | 122 | 4 | 4 | 319 | 1 | 320 | 1.57e-127 | 367 |
| MS.gene050929.t1 | AT4G15960 | 52.308 | 325 | 148 | 3 | 1 | 319 | 51 | 374 | 1.45e-124 | 362 |
| MS.gene050929.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 2.57e-111 | 323 |
| MS.gene050929.t1 | AT4G15955 | 49.387 | 326 | 127 | 4 | 5 | 319 | 6 | 304 | 7.70e-109 | 319 |
| MS.gene050929.t1 | AT3G51000 | 45.872 | 327 | 156 | 6 | 3 | 319 | 4 | 319 | 2.18e-103 | 306 |
| MS.gene050929.t1 | AT4G15955 | 56.897 | 174 | 65 | 2 | 5 | 168 | 6 | 179 | 3.68e-68 | 211 |
| MS.gene050929.t1 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 5.14e-65 | 203 |
Find 87 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.1:+3525270 | None:intergenic |
| CCCCTGACAAATTGCCTTCT+TGG | 0.174429 | 7.1:-3524674 | MS.gene050929:CDS |
| TTATTATATCTCTAGATTTC+AGG | 0.211379 | 7.1:-3525169 | MS.gene050929:intron |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7.1:-3524052 | MS.gene050929:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7.1:+3525234 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7.1:+3525301 | None:intergenic |
| GGCAATTTGTCAGGGGTATC+CGG | 0.299751 | 7.1:+3524681 | None:intergenic |
| TACTCTCCCTTTGGAAGTAT+TGG | 0.334854 | 7.1:+3524720 | None:intergenic |
| TTTGAGAAAACGGGCTTTGT+TGG | 0.335209 | 7.1:-3524615 | MS.gene050929:CDS |
| ATACTTCCAAAGGGAGAGTA+TGG | 0.337259 | 7.1:-3524717 | MS.gene050929:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7.1:-3525315 | MS.gene050929:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7.1:-3525216 | MS.gene050929:CDS |
| ATCACAGGAACCGGGCAAAA+TGG | 0.360568 | 7.1:-3524814 | MS.gene050929:intron |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7.1:-3525329 | MS.gene050929:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7.1:-3525198 | MS.gene050929:CDS |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.365676 | 7.1:-3524030 | MS.gene050929:CDS |
| GTTTCCAAATTTGAGAAAAC+GGG | 0.368898 | 7.1:-3524624 | MS.gene050929:CDS |
| ACAATCACTTCTTCCAAATT+CGG | 0.378669 | 7.1:+3524039 | None:intergenic |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.1:+3525513 | None:intergenic |
| TGTTTCCAAATTTGAGAAAA+CGG | 0.384535 | 7.1:-3524625 | MS.gene050929:CDS |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7.1:-3525492 | MS.gene050929:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7.1:-3525328 | MS.gene050929:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7.1:+3525302 | None:intergenic |
| AGCCAAGAAGGCAATTTGTC+AGG | 0.405805 | 7.1:+3524672 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.1:+3525444 | None:intergenic |
| TGGATATACTCCTTCACCTT+TGG | 0.407549 | 7.1:+3524087 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.1:-3524193 | MS.gene050929:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.1:-3525540 | MS.gene050929:CDS |
| GAAGTATTGGAGGACCAGTT+TGG | 0.425771 | 7.1:+3524733 | None:intergenic |
| ATCCTCACAACTCGCCAAAC+TGG | 0.430315 | 7.1:-3524747 | MS.gene050929:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.1:-3524135 | MS.gene050929:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.1:+3525271 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.1:-3525515 | MS.gene050929:CDS |
| CCAGTCCCATACTCTCCCTT+TGG | 0.435883 | 7.1:+3524711 | None:intergenic |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7.1:+3525487 | None:intergenic |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.1:+3525532 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7.1:-3525363 | MS.gene050929:CDS |
| CACAGAAAAGTTGAAGTGAA+TGG | 0.467750 | 7.1:-3525600 | MS.gene050929:CDS |
| TATCCATGGTGGAGGGTTCA+AGG | 0.477350 | 7.1:-3524070 | MS.gene050929:CDS |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7.1:-3525483 | MS.gene050929:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.1:+3525540 | None:intergenic |
| TCTCCCTTTGGAAGTATTGG+AGG | 0.487060 | 7.1:+3524723 | None:intergenic |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7.1:-3525573 | MS.gene050929:CDS |
| GCAATTTGTCAGGGGTATCC+GGG | 0.490025 | 7.1:+3524682 | None:intergenic |
| TCATCTTCTGTGAGCCAAGA+AGG | 0.501938 | 7.1:+3524660 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.1:-3525524 | MS.gene050929:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.1:-3525447 | MS.gene050929:CDS |
| GAGAAAACGGGCTTTGTTGG+AGG | 0.506662 | 7.1:-3524612 | MS.gene050929:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.1:-3525453 | MS.gene050929:CDS |
| GAAGTTCAGATGGCTGAAGT+TGG | 0.532879 | 7.1:-3524792 | MS.gene050929:CDS |
| GAAATTCATTACAGGTGACT+TGG | 0.543660 | 7.1:-3524127 | MS.gene050929:CDS |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.548522 | 7.1:-3525564 | MS.gene050929:CDS |
| AAGGAGTATATCCATGGTGG+AGG | 0.549978 | 7.1:-3524078 | MS.gene050929:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7.1:-3525430 | MS.gene050929:CDS |
| GCCAAGAAGGCAATTTGTCA+GGG | 0.555944 | 7.1:+3524673 | None:intergenic |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7.1:+3525411 | None:intergenic |
| TGGTCCTCCAATACTTCCAA+AGG | 0.564157 | 7.1:-3524727 | MS.gene050929:CDS |
| CCAAAGGGAGAGTATGGGAC+TGG | 0.568658 | 7.1:-3524711 | MS.gene050929:CDS |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7.1:+3525490 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 7.1:-3524171 | MS.gene050929:CDS |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7.1:-3525311 | MS.gene050929:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7.1:+3525419 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7.1:+3525254 | None:intergenic |
| GGGCAAAATGGAAGTTCAGA+TGG | 0.584429 | 7.1:-3524802 | MS.gene050929:CDS |
| ATACTCCTTCACCTTTGGTG+AGG | 0.584740 | 7.1:+3524092 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.591992 | 7.1:+3524132 | None:intergenic |
| GGTCCTCCAATACTTCCAAA+GGG | 0.592627 | 7.1:-3524726 | MS.gene050929:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.596236 | 7.1:-3524157 | MS.gene050929:CDS |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7.1:-3525327 | MS.gene050929:CDS |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.1:-3524184 | MS.gene050929:intron |
| CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7.1:-3523995 | MS.gene050929:CDS |
| GACCAGTTTGGCGAGTTGTG+AGG | 0.620536 | 7.1:+3524745 | None:intergenic |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7.1:-3525358 | MS.gene050929:CDS |
| TTATCCGTATCACAGGAACC+GGG | 0.623878 | 7.1:-3524822 | MS.gene050929:intron |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.1:+3525526 | None:intergenic |
| TACTTCCAAAGGGAGAGTAT+GGG | 0.628244 | 7.1:-3524716 | MS.gene050929:CDS |
| AAGGTGAAGGAGTATATCCA+TGG | 0.634923 | 7.1:-3524084 | MS.gene050929:CDS |
| ATACACCTCACCAAAGGTGA+AGG | 0.642917 | 7.1:-3524097 | MS.gene050929:CDS |
| AAACGACAGATAGAGATGGA+AGG | 0.647201 | 7.1:-3525630 | None:intergenic |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.1:-3524176 | MS.gene050929:CDS |
| CATTGTATACACCTCACCAA+AGG | 0.655794 | 7.1:-3524103 | MS.gene050929:CDS |
| CTTCCTTGAACCCTCCACCA+TGG | 0.658760 | 7.1:+3524067 | None:intergenic |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.1:+3525457 | None:intergenic |
| GTATGGGACTGGATTCAACC+CGG | 0.688961 | 7.1:-3524700 | MS.gene050929:CDS |
| CCAAGAAGGCAATTTGTCAG+GGG | 0.688969 | 7.1:+3524674 | None:intergenic |
| AGGAGTATATCCATGGTGGA+GGG | 0.690032 | 7.1:-3524077 | MS.gene050929:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7.1:-3524081 | MS.gene050929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTTTTAAAAAAAAAA+TGG | + | chr7.1:3525249-3525268 | None:intergenic | 0.0% |
| !! | GAGTAATATTAAATATGTTA+GGG | - | chr7.1:3524663-3524682 | MS.gene050929:CDS | 15.0% |
| !!! | TCTATATTTACATTTCTTTT+CGG | - | chr7.1:3525052-3525071 | MS.gene050929:intron | 15.0% |
| !! | ATGAATTATTGTTCATTCTA+AGG | - | chr7.1:3524641-3524660 | MS.gene050929:CDS | 20.0% |
| !! | CAACTTTAGTATTAACATAT+AGG | + | chr7.1:3524474-3524493 | None:intergenic | 20.0% |
| !! | GAAATGTAAATATAGATTTG+TGG | + | chr7.1:3525048-3525067 | None:intergenic | 20.0% |
| !! | GGAGTAATATTAAATATGTT+AGG | - | chr7.1:3524662-3524681 | MS.gene050929:CDS | 20.0% |
| !! | TTATTATATCTCTAGATTTC+AGG | - | chr7.1:3524400-3524419 | MS.gene050929:intron | 20.0% |
| !!! | CTATATTTACATTTCTTTTC+GGG | - | chr7.1:3525053-3525072 | MS.gene050929:intron | 20.0% |
| !!! | TATTTTAAGATGATACAGAA+AGG | + | chr7.1:3524431-3524450 | None:intergenic | 20.0% |
| ! | AATAGAGCCTAAATCAAAAT+CGG | - | chr7.1:3524566-3524585 | MS.gene050929:intron | 25.0% |
| ! | AATCAAAATCGGAACATTTA+TGG | - | chr7.1:3524577-3524596 | MS.gene050929:intron | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.1:3525375-3525394 | MS.gene050929:CDS | 25.0% |
| ! | TATTTATACCTGCAATATGA+CGG | + | chr7.1:3524694-3524713 | None:intergenic | 25.0% |
| ! | TGTCAAATATCAACACATAT+CGG | + | chr7.1:3525160-3525179 | None:intergenic | 25.0% |
| ! | TGTTTCCAAATTTGAGAAAA+CGG | - | chr7.1:3524944-3524963 | MS.gene050929:intron | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.1:3525376-3525395 | MS.gene050929:CDS | 25.0% |
| !!! | AAATGTTCCGATTTTGATTT+AGG | + | chr7.1:3524576-3524595 | None:intergenic | 25.0% |
| !!! | TGTAATATTTTGATTCTCTG+TGG | - | chr7.1:3525006-3525025 | MS.gene050929:intron | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | - | chr7.1:3523996-3524015 | MS.gene050929:CDS | 30.0% | |
| ACAATCACTTCTTCCAAATT+CGG | + | chr7.1:3525533-3525552 | None:intergenic | 30.0% | |
| ATGTCGTCCCAAAAAAAAAA+AGG | + | chr7.1:3525192-3525211 | None:intergenic | 30.0% | |
| ATTTATACCTGCAATATGAC+GGG | + | chr7.1:3524693-3524712 | None:intergenic | 30.0% | |
| CTAAATGTAATATGCGATTG+TGG | + | chr7.1:3525220-3525239 | None:intergenic | 30.0% | |
| GTTTCCAAATTTGAGAAAAC+GGG | - | chr7.1:3524945-3524964 | MS.gene050929:intron | 30.0% | |
| TATCTATGAGTCATACTCAA+TGG | - | chr7.1:3524519-3524538 | MS.gene050929:intron | 30.0% | |
| TGACTCATAGATATAGTTCA+AGG | + | chr7.1:3524512-3524531 | None:intergenic | 30.0% | |
| ! | TCGTGTTTTATATTTGTGTC+AGG | - | chr7.1:3525290-3525309 | MS.gene050929:CDS | 30.0% |
| !! | CATCAACAGTTCTGATTTTA+GGG | + | chr7.1:3524355-3524374 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTATCCGTATCAC+AGG | - | chr7.1:3524740-3524759 | MS.gene050929:CDS | 30.0% |
| AGATCACTCTTTATGAACCA+CGG | + | chr7.1:3525333-3525352 | None:intergenic | 35.0% | |
| ATGGAATGGAGTGAAAATCA+AGG | - | chr7.1:3525412-3525431 | MS.gene050929:CDS | 35.0% | |
| ATTCTTGATTGAGTCATGCT+GGG | + | chr7.1:3524623-3524642 | None:intergenic | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | - | chr7.1:3524005-3524024 | MS.gene050929:CDS | 35.0% | |
| CACAGAAAAGTTGAAGTGAA+TGG | - | chr7.1:3523969-3523988 | MS.gene050929:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | - | chr7.1:3524353-3524372 | MS.gene050929:intron | 35.0% | |
| GAAATTCATTACAGGTGACT+TGG | - | chr7.1:3525442-3525461 | MS.gene050929:CDS | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | - | chr7.1:3525539-3525558 | MS.gene050929:CDS | 35.0% | |
| GATTTGTGGAAAACAATCAG+AGG | + | chr7.1:3525034-3525053 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | + | chr7.1:3524270-3524289 | None:intergenic | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | - | chr7.1:3524241-3524260 | MS.gene050929:intron | 35.0% | |
| TATCAACACATATCGGACAT+TGG | + | chr7.1:3525153-3525172 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.1:3525440-3525459 | None:intergenic | 35.0% | |
| TCGTCCCAAAAAAAAAAAGG+CGG | + | chr7.1:3525189-3525208 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | + | chr7.1:3524271-3524290 | None:intergenic | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | - | chr7.1:3524240-3524259 | MS.gene050929:intron | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | - | chr7.1:3524242-3524261 | MS.gene050929:intron | 35.0% | |
| ! | AAAGCCCGTTTTCTCAAATT+TGG | + | chr7.1:3524952-3524971 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.1:3524302-3524321 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.1:3524301-3524320 | None:intergenic | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | - | chr7.1:3524176-3524195 | MS.gene050929:CDS | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | + | chr7.1:3525413-3525432 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | + | chr7.1:3524356-3524375 | None:intergenic | 35.0% |
| !!! | GACACCGCCTTTTTTTTTTT+GGG | - | chr7.1:3525182-3525201 | MS.gene050929:CDS | 35.0% |
| !!! | TGACACCGCCTTTTTTTTTT+TGG | - | chr7.1:3525181-3525200 | MS.gene050929:CDS | 35.0% |
| AGTGATTGTCCAAAAAGGAG+TGG | - | chr7.1:3525544-3525563 | MS.gene050929:CDS | 40.0% | |
| ATACTTCCAAAGGGAGAGTA+TGG | - | chr7.1:3524852-3524871 | MS.gene050929:intron | 40.0% | |
| CATTCTTGATTGAGTCATGC+TGG | + | chr7.1:3524624-3524643 | None:intergenic | 40.0% | |
| CATTGTATACACCTCACCAA+AGG | - | chr7.1:3525466-3525485 | MS.gene050929:CDS | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.1:3525434-3525453 | MS.gene050929:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.1:3524318-3524337 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACCTT+TGG | + | chr7.1:3525485-3525504 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | + | chr7.1:3524338-3524357 | None:intergenic | 40.0% | |
| TTTATCCGTATCACAGGAAC+CGG | - | chr7.1:3524746-3524765 | MS.gene050929:CDS | 40.0% | |
| TTTATGAACCACGGAGACAT+TGG | + | chr7.1:3525324-3525343 | None:intergenic | 40.0% | |
| ! | AAGGTGAAGGAGTATATCCA+TGG | - | chr7.1:3525485-3525504 | MS.gene050929:CDS | 40.0% |
| ! | ATCTGAACTTCCATTTTGCC+CGG | + | chr7.1:3524768-3524787 | None:intergenic | 40.0% |
| ! | TACTCTCCCTTTGGAAGTAT+TGG | + | chr7.1:3524852-3524871 | None:intergenic | 40.0% |
| ! | TACTTCCAAAGGGAGAGTAT+GGG | - | chr7.1:3524853-3524872 | MS.gene050929:intron | 40.0% |
| ! | TTTGAGAAAACGGGCTTTGT+TGG | - | chr7.1:3524954-3524973 | MS.gene050929:intron | 40.0% |
| AGCCAAGAAGGCAATTTGTC+AGG | + | chr7.1:3524900-3524919 | None:intergenic | 45.0% | |
| ATACACCTCACCAAAGGTGA+AGG | - | chr7.1:3525472-3525491 | MS.gene050929:CDS | 45.0% | |
| ATACTCCTTCACCTTTGGTG+AGG | + | chr7.1:3525480-3525499 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | - | chr7.1:3525574-3525593 | MS.gene050929:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | - | chr7.1:3525517-3525536 | MS.gene050929:CDS | 45.0% | |
| CCAAGAAGGCAATTTGTCAG+GGG | + | chr7.1:3524898-3524917 | None:intergenic | 45.0% | |
| GAAGTTCAGATGGCTGAAGT+TGG | - | chr7.1:3524777-3524796 | MS.gene050929:CDS | 45.0% | |
| GCCAAGAAGGCAATTTGTCA+GGG | + | chr7.1:3524899-3524918 | None:intergenic | 45.0% | |
| GGGCAAAATGGAAGTTCAGA+TGG | - | chr7.1:3524767-3524786 | MS.gene050929:CDS | 45.0% | |
| GGTCCTCCAATACTTCCAAA+GGG | - | chr7.1:3524843-3524862 | MS.gene050929:intron | 45.0% | |
| TCATCTTCTGTGAGCCAAGA+AGG | + | chr7.1:3524912-3524931 | None:intergenic | 45.0% | |
| TGGTCCTCCAATACTTCCAA+AGG | - | chr7.1:3524842-3524861 | MS.gene050929:intron | 45.0% | |
| TTATCCGTATCACAGGAACC+GGG | - | chr7.1:3524747-3524766 | MS.gene050929:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.1:3524054-3524073 | MS.gene050929:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.1:3525385-3525404 | MS.gene050929:CDS | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+AGG | - | chr7.1:3525491-3525510 | MS.gene050929:CDS | 45.0% |
| ! | AGGAGTATATCCATGGTGGA+GGG | - | chr7.1:3525492-3525511 | MS.gene050929:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | - | chr7.1:3525488-3525507 | MS.gene050929:CDS | 45.0% |
| ! | TGAAGTGAGCCACTCCTTTT+TGG | + | chr7.1:3525556-3525575 | None:intergenic | 45.0% |
| !! | GAAGTATTGGAGGACCAGTT+TGG | + | chr7.1:3524839-3524858 | None:intergenic | 45.0% |
| !! | TCTCCCTTTGGAAGTATTGG+AGG | + | chr7.1:3524849-3524868 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.1:3524046-3524065 | None:intergenic | 50.0% | |
| ATCACAGGAACCGGGCAAAA+TGG | - | chr7.1:3524755-3524774 | MS.gene050929:CDS | 50.0% | |
| ATCCTCACAACTCGCCAAAC+TGG | - | chr7.1:3524822-3524841 | MS.gene050929:intron | 50.0% | |
| CCCCTGACAAATTGCCTTCT+TGG | - | chr7.1:3524895-3524914 | MS.gene050929:intron | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.1:3524029-3524048 | MS.gene050929:CDS | 50.0% | |
| GTATGGGACTGGATTCAACC+CGG | - | chr7.1:3524869-3524888 | MS.gene050929:intron | 50.0% | |
| TGTTGTGTCCAATGTCTCCG+TGG | - | chr7.1:3525313-3525332 | MS.gene050929:CDS | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.1:3524045-3524064 | MS.gene050929:CDS | 50.0% | |
| TTTGCCCGGTTCCTGTGATA+CGG | + | chr7.1:3524754-3524773 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | - | chr7.1:3524258-3524277 | MS.gene050929:intron | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | - | chr7.1:3524254-3524273 | MS.gene050929:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.1:3524115-3524134 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGAGGGTTCA+AGG | - | chr7.1:3525499-3525518 | MS.gene050929:CDS | 50.0% |
| !! | GAGAAAACGGGCTTTGTTGG+AGG | - | chr7.1:3524957-3524976 | MS.gene050929:intron | 50.0% |
| !! | GCAATTTGTCAGGGGTATCC+GGG | + | chr7.1:3524890-3524909 | None:intergenic | 50.0% |
| !! | GGCAATTTGTCAGGGGTATC+CGG | + | chr7.1:3524891-3524910 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | - | chr7.1:3524206-3524225 | MS.gene050929:intron | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | - | chr7.1:3524211-3524230 | MS.gene050929:intron | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | - | chr7.1:3524086-3524105 | MS.gene050929:CDS | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.1:3525393-3525412 | MS.gene050929:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.1:3524040-3524059 | None:intergenic | 55.0% | |
| CCAGTCCCATACTCTCCCTT+TGG | + | chr7.1:3524861-3524880 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.1:3524032-3524051 | None:intergenic | 55.0% | |
| CTTCCTTGAACCCTCCACCA+TGG | + | chr7.1:3525505-3525524 | None:intergenic | 55.0% | |
| GACCAGTTTGGCGAGTTGTG+AGG | + | chr7.1:3524827-3524846 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.1:3525398-3525417 | MS.gene050929:CDS | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | + | chr7.1:3524161-3524180 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | + | chr7.1:3524153-3524172 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.1:3524122-3524141 | MS.gene050929:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.1:3524116-3524135 | MS.gene050929:CDS | 55.0% | |
| GGGTCTACCCGTCATATTGC+AGG | - | chr7.1:3524683-3524702 | MS.gene050929:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.1:3524128-3524147 | None:intergenic | 55.0% | |
| ! | CCAAAGGGAGAGTATGGGAC+TGG | - | chr7.1:3524858-3524877 | MS.gene050929:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.1:3524059-3524078 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | - | chr7.1:3524371-3524390 | MS.gene050929:intron | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | + | chr7.1:3524082-3524101 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | - | chr7.1:3524077-3524096 | MS.gene050929:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | - | chr7.1:3524139-3524158 | MS.gene050929:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | + | chr7.1:3524085-3524104 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3523954 | 3525637 | 3523954 | ID=MS.gene050929 |
| chr7.1 | mRNA | 3523954 | 3525637 | 3523954 | ID=MS.gene050929.t1;Parent=MS.gene050929 |
| chr7.1 | exon | 3525170 | 3525637 | 3525170 | ID=MS.gene050929.t1.exon1;Parent=MS.gene050929.t1 |
| chr7.1 | CDS | 3525170 | 3525637 | 3525170 | ID=cds.MS.gene050929.t1;Parent=MS.gene050929.t1 |
| chr7.1 | exon | 3524585 | 3524829 | 3524585 | ID=MS.gene050929.t1.exon2;Parent=MS.gene050929.t1 |
| chr7.1 | CDS | 3524585 | 3524829 | 3524585 | ID=cds.MS.gene050929.t1;Parent=MS.gene050929.t1 |
| chr7.1 | exon | 3523954 | 3524200 | 3523954 | ID=MS.gene050929.t1.exon3;Parent=MS.gene050929.t1 |
| chr7.1 | CDS | 3523954 | 3524200 | 3523954 | ID=cds.MS.gene050929.t1;Parent=MS.gene050929.t1 |
| Gene Sequence |
| Protein sequence |
