Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07298.t1 | KEH43196.1 | 91.3 | 817 | 38 | 6 | 10 | 803 | 5 | 811 | 0.00E+00 | 1389.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07298.t1 | Q9ZSM8 | 48.0 | 846 | 357 | 20 | 20 | 803 | 32 | 856 | 9.3e-195 | 681.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07298.t1 | A0A072VNH8 | 91.3 | 817 | 38 | 6 | 10 | 803 | 5 | 811 | 0.0e+00 | 1389.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene07298 | 0.817779 | 2.76E-52 | -1.69E-46 |
MS.gene050156 | MS.gene07298 | 0.809038 | 2.30E-50 | -1.69E-46 |
MS.gene050559 | MS.gene07298 | 0.805199 | 1.50E-49 | -1.69E-46 |
MS.gene050561 | MS.gene07298 | 0.806473 | 8.09E-50 | -1.69E-46 |
MS.gene050844 | MS.gene07298 | 0.808084 | 3.68E-50 | -1.69E-46 |
MS.gene051744 | MS.gene07298 | 0.836388 | 9.64E-57 | -1.69E-46 |
MS.gene051957 | MS.gene07298 | 0.803843 | 2.87E-49 | -1.69E-46 |
MS.gene052519 | MS.gene07298 | 0.816936 | 4.28E-52 | -1.69E-46 |
MS.gene052582 | MS.gene07298 | 0.800038 | 1.74E-48 | -1.69E-46 |
MS.gene052611 | MS.gene07298 | 0.822687 | 2.07E-53 | -1.69E-46 |
MS.gene053900 | MS.gene07298 | 0.816123 | 6.50E-52 | -1.69E-46 |
MS.gene053998 | MS.gene07298 | 0.810296 | 1.24E-50 | -1.69E-46 |
MS.gene054651 | MS.gene07298 | 0.822549 | 2.23E-53 | -1.69E-46 |
MS.gene055227 | MS.gene07298 | 0.80118 | 1.02E-48 | -1.69E-46 |
MS.gene055586 | MS.gene07298 | 0.806129 | 9.55E-50 | -1.69E-46 |
MS.gene055818 | MS.gene07298 | 0.832675 | 8.26E-56 | -1.69E-46 |
MS.gene056050 | MS.gene07298 | 0.812691 | 3.73E-51 | -1.69E-46 |
MS.gene056162 | MS.gene07298 | 0.802877 | 4.55E-49 | -1.69E-46 |
MS.gene056854 | MS.gene07298 | 0.804668 | 1.93E-49 | -1.69E-46 |
MS.gene05686 | MS.gene07298 | 0.824124 | 9.56E-54 | -1.69E-46 |
MS.gene057026 | MS.gene07298 | 0.827718 | 1.34E-54 | -1.69E-46 |
MS.gene057208 | MS.gene07298 | 0.805383 | 1.37E-49 | -1.69E-46 |
MS.gene057598 | MS.gene07298 | 0.805384 | 1.37E-49 | -1.69E-46 |
MS.gene057855 | MS.gene07298 | 0.815044 | 1.13E-51 | -1.69E-46 |
MS.gene058010 | MS.gene07298 | 0.812604 | 3.90E-51 | -1.69E-46 |
MS.gene058625 | MS.gene07298 | 0.808717 | 2.70E-50 | -1.69E-46 |
MS.gene058783 | MS.gene07298 | 0.801426 | 9.05E-49 | -1.69E-46 |
MS.gene058829 | MS.gene07298 | 0.832903 | 7.25E-56 | -1.69E-46 |
MS.gene058979 | MS.gene07298 | 0.844656 | 6.60E-59 | -1.69E-46 |
MS.gene059439 | MS.gene07298 | 0.805703 | 1.17E-49 | -1.69E-46 |
MS.gene060348 | MS.gene07298 | 0.813055 | 3.11E-51 | -1.69E-46 |
MS.gene060352 | MS.gene07298 | 0.82591 | 3.62E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene043961 | MS.gene07298 | PPI |
MS.gene07298 | MS.gene035889 | PPI |
MS.gene066336 | MS.gene07298 | PPI |
MS.gene07298 | MS.gene010130 | PPI |
MS.gene07298 | MS.gene010214 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07298.t1 | MTR_1g086980 | 91.443 | 818 | 37 | 6 | 9 | 803 | 24 | 831 | 0.0 | 1513 |
MS.gene07298.t1 | MTR_1g086980 | 91.230 | 821 | 39 | 6 | 6 | 803 | 11 | 821 | 0.0 | 1511 |
MS.gene07298.t1 | MTR_1g086980 | 91.443 | 818 | 37 | 6 | 9 | 803 | 4 | 811 | 0.0 | 1511 |
MS.gene07298.t1 | MTR_1g086980 | 91.128 | 789 | 37 | 6 | 38 | 803 | 2 | 780 | 0.0 | 1455 |
MS.gene07298.t1 | MTR_1g086980 | 91.157 | 769 | 35 | 6 | 58 | 803 | 1 | 759 | 0.0 | 1415 |
MS.gene07298.t1 | MTR_1g086980 | 91.733 | 750 | 39 | 5 | 6 | 732 | 11 | 760 | 0.0 | 1385 |
MS.gene07298.t1 | MTR_1g086980 | 93.878 | 686 | 22 | 3 | 6 | 671 | 11 | 696 | 0.0 | 1313 |
MS.gene07298.t1 | MTR_1g086980 | 94.006 | 634 | 18 | 3 | 58 | 671 | 1 | 634 | 0.0 | 1217 |
MS.gene07298.t1 | MTR_1g086980 | 93.228 | 635 | 26 | 4 | 176 | 803 | 7 | 631 | 0.0 | 1208 |
MS.gene07298.t1 | MTR_1g086980 | 93.375 | 634 | 22 | 3 | 6 | 619 | 11 | 644 | 0.0 | 1203 |
MS.gene07298.t1 | MTR_5g016870 | 43.326 | 854 | 372 | 20 | 24 | 799 | 42 | 861 | 0.0 | 597 |
MS.gene07298.t1 | MTR_7g055660 | 51.716 | 408 | 168 | 10 | 403 | 801 | 345 | 732 | 4.90e-124 | 389 |
MS.gene07298.t1 | MTR_7g055660 | 39.222 | 334 | 175 | 8 | 11 | 323 | 20 | 346 | 7.34e-66 | 233 |
MS.gene07298.t1 | MTR_7g109560 | 52.570 | 428 | 169 | 11 | 388 | 800 | 353 | 761 | 2.26e-118 | 375 |
MS.gene07298.t1 | MTR_7g109560 | 44.027 | 293 | 129 | 8 | 19 | 289 | 74 | 353 | 1.21e-62 | 225 |
MS.gene07298.t1 | MTR_8g064250 | 57.143 | 63 | 24 | 2 | 741 | 800 | 7 | 69 | 4.32e-15 | 72.4 |
MS.gene07298.t1 | MTR_8g064320 | 57.143 | 63 | 24 | 2 | 741 | 800 | 9 | 71 | 7.87e-15 | 71.6 |
MS.gene07298.t1 | MTR_8g064310 | 55.769 | 52 | 21 | 1 | 740 | 789 | 6 | 57 | 1.47e-12 | 63.9 |
MS.gene07298.t1 | MTR_8g064240 | 58.000 | 50 | 19 | 1 | 742 | 789 | 26 | 75 | 5.40e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07298.t1 | AT4G02020 | 52.291 | 851 | 309 | 21 | 22 | 803 | 34 | 856 | 0.0 | 779 |
MS.gene07298.t1 | AT4G02020 | 50.771 | 778 | 296 | 20 | 22 | 730 | 34 | 793 | 0.0 | 681 |
MS.gene07298.t1 | AT4G02020 | 50.266 | 752 | 287 | 20 | 22 | 704 | 34 | 767 | 0.0 | 650 |
MS.gene07298.t1 | AT4G02020 | 50.266 | 752 | 287 | 20 | 22 | 704 | 34 | 767 | 0.0 | 650 |
MS.gene07298.t1 | AT2G23380 | 56.977 | 430 | 154 | 12 | 383 | 799 | 262 | 673 | 6.90e-145 | 442 |
MS.gene07298.t1 | AT2G23380 | 56.923 | 65 | 24 | 1 | 226 | 286 | 30 | 94 | 2.17e-15 | 80.9 |
MS.gene07298.t1 | AT2G23380 | 56.977 | 430 | 154 | 12 | 383 | 799 | 489 | 900 | 9.52e-143 | 443 |
MS.gene07298.t1 | AT2G23380 | 35.647 | 317 | 153 | 10 | 11 | 286 | 15 | 321 | 4.26e-41 | 162 |
MS.gene07298.t1 | AT1G02580 | 43.176 | 403 | 183 | 9 | 399 | 793 | 323 | 687 | 3.21e-99 | 323 |
MS.gene07298.t1 | AT1G02580 | 26.911 | 327 | 179 | 11 | 10 | 289 | 3 | 316 | 6.12e-19 | 92.4 |
MS.gene07298.t1 | AT1G02580 | 42.105 | 285 | 134 | 5 | 399 | 679 | 323 | 580 | 6.01e-66 | 230 |
MS.gene07298.t1 | AT1G02580 | 26.911 | 327 | 179 | 11 | 10 | 289 | 3 | 316 | 6.86e-19 | 91.7 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTAAAGGTTATGATTAA+TGG | 0.165609 | 1.2:-65391691 | MS.gene07298:CDS |
AAATGACAAACTTACCTTAA+TGG | 0.174208 | 1.2:+65398776 | None:intergenic |
TTGGGGAAGTCTGATGTTTC+TGG | 0.176477 | 1.2:-65391724 | MS.gene07298:CDS |
CAGTATTATTCCTTCTTTCT+TGG | 0.202979 | 1.2:+65399343 | None:intergenic |
AAGGATTGTTCTTGTCTTAA+TGG | 0.220999 | 1.2:-65394207 | MS.gene07298:CDS |
GTCTCATTTGTGACAGCTTT+TGG | 0.239771 | 1.2:+65396152 | None:intergenic |
CAAGGAAGTTTAAATATTCT+TGG | 0.253650 | 1.2:-65394329 | MS.gene07298:CDS |
CGTCCTTTATGTAAATTCTA+TGG | 0.263958 | 1.2:-65398348 | MS.gene07298:CDS |
TATGACATTGCAGCTTCTTC+TGG | 0.297074 | 1.2:+65398460 | None:intergenic |
TGGATGGGGAGCCTTCTTAA+AGG | 0.301212 | 1.2:-65391704 | MS.gene07298:CDS |
GAACGAGTTGATGGAATTCT+TGG | 0.315350 | 1.2:-65396098 | MS.gene07298:CDS |
ATAGCTAGGAACTTACTTTC+TGG | 0.330151 | 1.2:-65395403 | MS.gene07298:CDS |
TTGCCCTGGTTTCTGTCTCC+TGG | 0.332763 | 1.2:+65398312 | None:intergenic |
GATTACCTGGATTTCTAAAC+TGG | 0.334427 | 1.2:+65397479 | None:intergenic |
CGAGAGAATTCAATCCATTA+AGG | 0.335586 | 1.2:-65398790 | MS.gene07298:intron |
TTACAAGAATCCTGAGAATC+AGG | 0.335745 | 1.2:+65396245 | None:intergenic |
TTCACCTTTGCATAGCAGTT+GGG | 0.335759 | 1.2:+65391189 | None:intergenic |
CTGCTGGTCACCCAACAATA+TGG | 0.336522 | 1.2:-65394302 | MS.gene07298:CDS |
TTCAATTCTTTCCTCAAGAA+TGG | 0.346641 | 1.2:-65398373 | MS.gene07298:CDS |
CACAGGTCTATTATTTCAGC+TGG | 0.378581 | 1.2:-65395322 | MS.gene07298:CDS |
GAATTCTTGGTTTCTCAGAT+TGG | 0.379032 | 1.2:-65396085 | MS.gene07298:CDS |
AGAGTTAAAAGAAGACAGTT+TGG | 0.381389 | 1.2:-65396954 | MS.gene07298:intron |
AAGCTGCAATGTCATACTTC+AGG | 0.381738 | 1.2:-65398453 | MS.gene07298:CDS |
CTCAGCAACCTCGGTCTAGA+TGG | 0.384033 | 1.2:+65394366 | None:intergenic |
TTGCAACTGATTTATCTTGT+TGG | 0.384750 | 1.2:+65398827 | None:intergenic |
GGTATCAGAGAAAGTAATAT+TGG | 0.392791 | 1.2:-65397306 | MS.gene07298:CDS |
GCCCATGGAGGTGCTTGATC+TGG | 0.396645 | 1.2:+65390649 | None:intergenic |
CTCTTCTATGATTATTGCTA+TGG | 0.397112 | 1.2:-65390673 | MS.gene07298:CDS |
GGTTTCTGTCTCCTGGACCC+TGG | 0.403366 | 1.2:+65398319 | None:intergenic |
CTATAGGTAATGTTGGTTGC+TGG | 0.407659 | 1.2:-65390748 | MS.gene07298:intron |
AATTGCTGATTCGTCTCTCT+TGG | 0.412706 | 1.2:+65390609 | None:intergenic |
TGGAAATGTTTGGCAGAAAC+AGG | 0.418632 | 1.2:-65396028 | MS.gene07298:intron |
AAGGTTCCCACATCATCATT+TGG | 0.421371 | 1.2:+65398852 | None:intergenic |
ACTCAGAAAACTTGAGTAAA+CGG | 0.424610 | 1.2:-65396316 | MS.gene07298:CDS |
TAATAGCAAGAGCTTACATT+TGG | 0.424724 | 1.2:-65396180 | MS.gene07298:CDS |
TTGAAGGGAGTGGAAATGTT+TGG | 0.426717 | 1.2:-65396038 | MS.gene07298:CDS |
CAACAGTTTCGACAGACATC+TGG | 0.427301 | 1.2:+65393610 | None:intergenic |
TATTTCAGCTGGTTCAATCA+TGG | 0.427476 | 1.2:-65395311 | MS.gene07298:CDS |
GAGTATACTGCATGCAAGAT+TGG | 0.429208 | 1.2:+65394256 | None:intergenic |
AATTTCTAGTATGGCATTTG+AGG | 0.432378 | 1.2:-65397557 | MS.gene07298:intron |
CTCCGTCTGTGAAGAGTCCC+TGG | 0.432892 | 1.2:+65398410 | None:intergenic |
GTTTCTGTCTCCTGGACCCT+GGG | 0.433547 | 1.2:+65398320 | None:intergenic |
ATCCAGAAAATCAGATTGTT+GGG | 0.436369 | 1.2:-65391167 | MS.gene07298:CDS |
TGGTGATCAGTGCTACCTTC+AGG | 0.436446 | 1.2:-65396902 | MS.gene07298:intron |
ATGTTGTTAGCAAGTATGTT+GGG | 0.438742 | 1.2:-65397506 | MS.gene07298:CDS |
CAGCTGTGGGGATGGTACAC+TGG | 0.439264 | 1.2:-65391932 | MS.gene07298:CDS |
TCAATGGAAGAACGAGTTGA+TGG | 0.443369 | 1.2:-65396107 | MS.gene07298:CDS |
AATCCAGAAAATCAGATTGT+TGG | 0.444933 | 1.2:-65391168 | MS.gene07298:CDS |
TTCTCTAGATACATGCTCAT+AGG | 0.445332 | 1.2:+65397240 | None:intergenic |
CTTAATGGATTGAATTCTCT+CGG | 0.445675 | 1.2:+65398791 | None:intergenic |
AAGATCGCTTCCTGATTCTC+AGG | 0.449551 | 1.2:-65396255 | MS.gene07298:CDS |
CACAATGGCAACCTCTGAAC+CGG | 0.454848 | 1.2:+65393692 | None:intergenic |
ATTCACCTTTGCATAGCAGT+TGG | 0.455961 | 1.2:+65391188 | None:intergenic |
GTTCGAAGAGCTGCAAGAAC+CGG | 0.461634 | 1.2:-65393711 | MS.gene07298:CDS |
ACTGCCAGGTTCTTCTGCAC+TGG | 0.463190 | 1.2:+65396400 | None:intergenic |
TCGTCTCTCTTGGAACCCTC+AGG | 0.464748 | 1.2:+65390619 | None:intergenic |
AGAGAAAGAGTTATACTTGA+AGG | 0.465034 | 1.2:-65396054 | MS.gene07298:CDS |
ATTAATCATAACCTTTAAGA+AGG | 0.469624 | 1.2:+65391693 | None:intergenic |
TGGATTGAATTCTCTCGGCC+TGG | 0.469701 | 1.2:+65398796 | None:intergenic |
AAACCATAGAATTTACATAA+AGG | 0.469948 | 1.2:+65398345 | None:intergenic |
ACCGGCATCAATGTGTTCCT+TGG | 0.472051 | 1.2:+65390702 | None:intergenic |
AAATATTCTTGGAAGTCTGC+TGG | 0.473416 | 1.2:-65394318 | MS.gene07298:CDS |
ATTGGCCATGGCTCATCAAT+GGG | 0.475159 | 1.2:+65390558 | None:intergenic |
GAAGTCTGATGTTTCTGGAT+GGG | 0.479401 | 1.2:-65391719 | MS.gene07298:CDS |
GAGCCACATCGGCGTGGAGA+AGG | 0.489074 | 1.2:-65391907 | MS.gene07298:CDS |
GATTACCACCATATACATCT+TGG | 0.489282 | 1.2:-65398242 | MS.gene07298:CDS |
TCGACTTCTACATTGACTCT+TGG | 0.492456 | 1.2:+65393669 | None:intergenic |
TCTGTCGAAACTGTTGGGTT+AGG | 0.492462 | 1.2:-65393603 | MS.gene07298:intron |
GTTCTTGATGCTTATCGTAA+AGG | 0.493028 | 1.2:-65391247 | MS.gene07298:CDS |
AAGTCTGATGTTTCTGGATG+GGG | 0.494803 | 1.2:-65391718 | MS.gene07298:CDS |
GCTGACGATCAATCAGTTGT+TGG | 0.496379 | 1.2:-65398027 | MS.gene07298:CDS |
GGGCACCAGTTTAGAAATCC+AGG | 0.497692 | 1.2:-65397484 | MS.gene07298:intron |
TCACCTTTGCATAGCAGTTG+GGG | 0.500009 | 1.2:+65391190 | None:intergenic |
AGAAAGTAATATTGGTAGGT+TGG | 0.500552 | 1.2:-65397298 | MS.gene07298:CDS |
AATGTTGTTAGCAAGTATGT+TGG | 0.504453 | 1.2:-65397507 | MS.gene07298:CDS |
AGATGTCTGTCGAAACTGTT+GGG | 0.506928 | 1.2:-65393608 | MS.gene07298:CDS |
AGCAGTTGGGGTTTGATGAG+TGG | 0.507871 | 1.2:+65391202 | None:intergenic |
CCATGGCTCATCAATGGGAT+TGG | 0.508976 | 1.2:+65390563 | None:intergenic |
GACGACAGAAAAGGTTATCA+AGG | 0.510059 | 1.2:+65397193 | None:intergenic |
AGAGTTATACTTGAAGGGAG+TGG | 0.511021 | 1.2:-65396048 | MS.gene07298:CDS |
GACCAGCATCCTAAAAGCTC+AGG | 0.512493 | 1.2:-65397276 | MS.gene07298:CDS |
AGCAAGAGCTTACATTTGGA+TGG | 0.514477 | 1.2:-65396176 | MS.gene07298:CDS |
GTCCAGATCAAGCACCTCCA+TGG | 0.515220 | 1.2:-65390651 | MS.gene07298:CDS |
TTCCTTACGGGATATATCAA+AGG | 0.515656 | 1.2:+65397046 | None:intergenic |
CCAGGCACCGACGACAGAAA+AGG | 0.520888 | 1.2:+65397184 | None:intergenic |
CCTGCTCATTCAAATCGAAA+AGG | 0.520942 | 1.2:+65391498 | None:intergenic |
TTTCTTATCCCGAAAAGACC+CGG | 0.523094 | 1.2:+65396463 | None:intergenic |
GGAAGTCTGATGTTTCTGGA+TGG | 0.525818 | 1.2:-65391720 | MS.gene07298:CDS |
GAGGAACACGGGTTTAAATG+AGG | 0.528118 | 1.2:-65397538 | MS.gene07298:CDS |
TGTTTCTTTGCTCTACCTTG+TGG | 0.528560 | 1.2:+65390586 | None:intergenic |
GATTGTTCTTGTCTTAATGG+TGG | 0.531062 | 1.2:-65394204 | MS.gene07298:CDS |
CTGATTTATCTTGTTGGACA+AGG | 0.531637 | 1.2:+65398833 | None:intergenic |
AGCTGAAATAATAGACCTGT+GGG | 0.532398 | 1.2:+65395324 | None:intergenic |
AAGCATCAAGATTCCACGTA+TGG | 0.533307 | 1.2:-65398268 | MS.gene07298:CDS |
CCATGACAATCAATTCTTGT+CGG | 0.533836 | 1.2:+65396362 | None:intergenic |
TCGGTCTAGATGGCATGTCT+TGG | 0.533864 | 1.2:+65394376 | None:intergenic |
TCTGCAGTTGCCTCATAGCT+AGG | 0.536215 | 1.2:-65395417 | MS.gene07298:intron |
CCATCCAGTGCAGAAGAACC+TGG | 0.536754 | 1.2:-65396404 | MS.gene07298:CDS |
AAGTATAACTCTTTCTCTAG+AGG | 0.540229 | 1.2:+65396059 | None:intergenic |
TTCTGGTTCGAAGACTTGCA+TGG | 0.543056 | 1.2:-65395386 | MS.gene07298:CDS |
CCAGGTTCTTCTGCACTGGA+TGG | 0.543278 | 1.2:+65396404 | None:intergenic |
AAGCAATGAGCCAAGAAAGA+AGG | 0.544312 | 1.2:-65399353 | None:intergenic |
GAGAAAGAGTTATACTTGAA+GGG | 0.544561 | 1.2:-65396053 | MS.gene07298:CDS |
TCACGCCCAGCAGCAAAACA+TGG | 0.547646 | 1.2:+65393640 | None:intergenic |
AGTGTAGTACTCTGACTGCC+AGG | 0.547776 | 1.2:+65396386 | None:intergenic |
TAAAGGACGTTCCATTCTTG+AGG | 0.549533 | 1.2:+65398362 | None:intergenic |
CCCTCAGGTTTACGAGCCCA+TGG | 0.549721 | 1.2:+65390634 | None:intergenic |
TACATTGACTCTTGGCACAA+TGG | 0.551079 | 1.2:+65393677 | None:intergenic |
CAGATGTCTGTCGAAACTGT+TGG | 0.555785 | 1.2:-65393609 | MS.gene07298:CDS |
AGCTGTGGGGATGGTACACT+GGG | 0.558478 | 1.2:-65391931 | MS.gene07298:CDS |
ATGACATGTCTTGATTGCCC+TGG | 0.559314 | 1.2:+65398298 | None:intergenic |
ATCATAGAAGAGCTCCTCAC+CGG | 0.561900 | 1.2:+65390684 | None:intergenic |
TTCTTATCCCGAAAAGACCC+GGG | 0.566631 | 1.2:+65396464 | None:intergenic |
GGGTCCAGGAGACAGAAACC+AGG | 0.568933 | 1.2:-65398316 | MS.gene07298:CDS |
GCCAAGGAACACATTGATGC+CGG | 0.569010 | 1.2:-65390703 | MS.gene07298:CDS |
ACTGCTGCTATAGGTAATGT+TGG | 0.569757 | 1.2:-65390755 | MS.gene07298:intron |
TCAGTTGCAAAAGCAAATCC+AGG | 0.571291 | 1.2:-65398814 | MS.gene07298:CDS |
CCGACAAGAATTGATTGTCA+TGG | 0.573856 | 1.2:-65396362 | MS.gene07298:CDS |
TAATGTCAGCAGTATCAACC+AGG | 0.580659 | 1.2:-65398428 | MS.gene07298:CDS |
TCAGAGAAAGTAATATTGGT+AGG | 0.581287 | 1.2:-65397302 | MS.gene07298:CDS |
CAGAAAATCAGATTGTTGGG+AGG | 0.582015 | 1.2:-65391164 | MS.gene07298:intron |
AAAGTAAGTTCCTAGCTATG+AGG | 0.582475 | 1.2:+65395407 | None:intergenic |
AGAGCCGCCAAATGATGATG+TGG | 0.582841 | 1.2:-65398859 | MS.gene07298:CDS |
AGCTGCAAGAACCGGTTCAG+AGG | 0.582865 | 1.2:-65393703 | MS.gene07298:CDS |
GTTGCTGGAGATCATCGAGT+TGG | 0.583554 | 1.2:-65390733 | MS.gene07298:CDS |
CACATTGATTGACACCCACA+TGG | 0.585645 | 1.2:+65394234 | None:intergenic |
ACAATTGTAGAGGAGACAGA+TGG | 0.588503 | 1.2:-65396437 | MS.gene07298:CDS |
TCCAGATCAAGCACCTCCAT+GGG | 0.593087 | 1.2:-65390650 | MS.gene07298:CDS |
TGACCTTCTCCACGCCGATG+TGG | 0.594534 | 1.2:+65391904 | None:intergenic |
CACAGAGAAGCTGATAAGCG+TGG | 0.596923 | 1.2:-65391551 | MS.gene07298:CDS |
TGAGTCACATTGTGCCGTGT+CGG | 0.596974 | 1.2:+65396277 | None:intergenic |
TCTTTGTACAGCTGTGGGGA+TGG | 0.597302 | 1.2:-65391940 | MS.gene07298:intron |
AATCAGTTGTTGGAAGAAGA+CGG | 0.597314 | 1.2:-65398017 | MS.gene07298:CDS |
TAAGAAAACTACAATTGTAG+AGG | 0.600144 | 1.2:-65396447 | MS.gene07298:CDS |
CACGCCCAGCAGCAAAACAT+GGG | 0.606423 | 1.2:+65393641 | None:intergenic |
ATTACCTAGGAGAGTAACAC+GGG | 0.607060 | 1.2:-65391588 | MS.gene07298:intron |
ATATCTAGTTATATGCATGA+TGG | 0.607787 | 1.2:-65395361 | MS.gene07298:CDS |
AACCAGGGACTCTTCACAGA+CGG | 0.608975 | 1.2:-65398412 | MS.gene07298:CDS |
GTTCCCACATCATCATTTGG+CGG | 0.610279 | 1.2:+65398855 | None:intergenic |
AAAATTTGACACAGAGTGCA+CGG | 0.611174 | 1.2:-65395278 | MS.gene07298:intron |
TTTCAAAAGATTCAACTCCC+GGG | 0.612464 | 1.2:-65396481 | MS.gene07298:CDS |
GTATGGCATTTGAGGAACAC+GGG | 0.614929 | 1.2:-65397549 | MS.gene07298:CDS |
ATATGGAAAAGAATTGCTGA+TGG | 0.619252 | 1.2:-65394285 | MS.gene07298:CDS |
GAGGCATGTCAATTCCCCAC+AGG | 0.619873 | 1.2:-65395339 | MS.gene07298:CDS |
CAGCTGAAATAATAGACCTG+TGG | 0.621680 | 1.2:+65395323 | None:intergenic |
AGTATGGCATTTGAGGAACA+CGG | 0.622172 | 1.2:-65397550 | MS.gene07298:CDS |
ACAGAGAAGCTGATAAGCGT+GGG | 0.622981 | 1.2:-65391550 | MS.gene07298:CDS |
AAAACACAGGAGAGGTACAA+AGG | 0.625367 | 1.2:-65397327 | MS.gene07298:intron |
TCCATGGGCTCGTAAACCTG+AGG | 0.626427 | 1.2:-65390635 | MS.gene07298:CDS |
AATATCCAAGATGTATATGG+TGG | 0.626743 | 1.2:+65398237 | None:intergenic |
AAACCCCAACTGCTATGCAA+AGG | 0.629398 | 1.2:-65391193 | MS.gene07298:CDS |
CCATGGGCTCGTAAACCTGA+GGG | 0.632587 | 1.2:-65390634 | MS.gene07298:CDS |
TCGAGTTGGCATATTCGCCA+AGG | 0.633128 | 1.2:-65390719 | MS.gene07298:CDS |
GAGCCGCCAAATGATGATGT+GGG | 0.634443 | 1.2:-65398858 | MS.gene07298:CDS |
GGGAATCTAATGCATCACTC+AGG | 0.636717 | 1.2:+65397214 | None:intergenic |
GGTTCAATCATGGACGACAA+AGG | 0.638496 | 1.2:-65395301 | MS.gene07298:CDS |
TTATGATCAACGTGGAAGTG+AGG | 0.638890 | 1.2:-65397989 | MS.gene07298:CDS |
CAATTGTAGAGGAGACAGAT+GGG | 0.639184 | 1.2:-65396436 | MS.gene07298:CDS |
ACAGTTTGGTCTGAGCCTGT+AGG | 0.639905 | 1.2:-65396940 | MS.gene07298:CDS |
GGTGGTAATCTTTCCATACG+TGG | 0.640705 | 1.2:+65398255 | None:intergenic |
ACGACAGAAAAGGTTATCAA+GGG | 0.642705 | 1.2:+65397194 | None:intergenic |
TCTAGTTATATGCATGATGG+AGG | 0.645067 | 1.2:-65395358 | MS.gene07298:CDS |
TGTTGTTAGCAAGTATGTTG+GGG | 0.651009 | 1.2:-65397505 | MS.gene07298:CDS |
GGAACACATTGATGCCGGTG+AGG | 0.653810 | 1.2:-65390698 | MS.gene07298:CDS |
CTGGGAGAGCCACATCGGCG+TGG | 0.657062 | 1.2:-65391913 | MS.gene07298:CDS |
GCATGCAGTATACTCCATGT+GGG | 0.660903 | 1.2:-65394248 | MS.gene07298:CDS |
GTGTCAATCAATGTGTGGAA+AGG | 0.662829 | 1.2:-65394226 | MS.gene07298:CDS |
GAACACGGGTTTAAATGAGG+AGG | 0.664878 | 1.2:-65397535 | MS.gene07298:CDS |
GGTCCAGGAGACAGAAACCA+GGG | 0.668116 | 1.2:-65398315 | MS.gene07298:CDS |
GACGAATCAGCAATTCCACA+AGG | 0.669739 | 1.2:-65390601 | MS.gene07298:CDS |
TGCATGCAGTATACTCCATG+TGG | 0.671233 | 1.2:-65394249 | MS.gene07298:CDS |
GTTGTTAGCAAGTATGTTGG+GGG | 0.673475 | 1.2:-65397504 | MS.gene07298:CDS |
GATTACCTAGGAGAGTAACA+CGG | 0.677195 | 1.2:-65391589 | MS.gene07298:intron |
ATTGATATGCAGTGACAGTG+AGG | 0.679098 | 1.2:-65397965 | MS.gene07298:CDS |
CAGGGACTCTTCACAGACGG+AGG | 0.683082 | 1.2:-65398409 | MS.gene07298:CDS |
ACACTCTTTGTACAGCTGTG+GGG | 0.688643 | 1.2:-65391944 | MS.gene07298:intron |
CGGATCTATTATGATCAACG+TGG | 0.691963 | 1.2:-65397997 | MS.gene07298:CDS |
TGTGGGTGTCAATCAATGTG+TGG | 0.694307 | 1.2:-65394231 | MS.gene07298:CDS |
AGGTAGCACTGATCACCACA+TGG | 0.697472 | 1.2:+65396907 | None:intergenic |
GTACACTGGGAGAGCCACAT+CGG | 0.707893 | 1.2:-65391918 | MS.gene07298:CDS |
AGTCACAAATCAGTCCGACA+CGG | 0.716243 | 1.2:-65396291 | MS.gene07298:CDS |
GAAGAATTAACAGAACCTGA+CGG | 0.721323 | 1.2:-65397943 | MS.gene07298:intron |
AATGTCAGCAGTATCAACCA+GGG | 0.730778 | 1.2:-65398427 | MS.gene07298:CDS |
AAGACATGCCATCTAGACCG+AGG | 0.737982 | 1.2:-65394374 | MS.gene07298:CDS |
CGGCGTGGAGAAGGTCAATG+CGG | 0.745375 | 1.2:-65391898 | MS.gene07298:CDS |
TCAGGTTTACGAGCCCATGG+AGG | 0.763936 | 1.2:+65390637 | None:intergenic |
GCTGAAATAATAGACCTGTG+GGG | 0.791200 | 1.2:+65395325 | None:intergenic |
GTAGGTGATAGAAAACCATG+TGG | 0.821461 | 1.2:-65396922 | MS.gene07298:CDS |
TTACCTAGGAGAGTAACACG+GGG | 0.857508 | 1.2:-65391587 | MS.gene07298:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 65390573 | 65399370 | 65390573 | ID=MS.gene07298 |
chr1.2 | mRNA | 65390573 | 65399370 | 65390573 | ID=MS.gene07298.t1;Parent=MS.gene07298 |
chr1.2 | exon | 65399344 | 65399370 | 65399344 | ID=MS.gene07298.t1.exon1;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65399344 | 65399370 | 65399344 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65398791 | 65398883 | 65398791 | ID=MS.gene07298.t1.exon2;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65398791 | 65398883 | 65398791 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65398227 | 65398499 | 65398227 | ID=MS.gene07298.t1.exon3;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65398227 | 65398499 | 65398227 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65397944 | 65398055 | 65397944 | ID=MS.gene07298.t1.exon4;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65397944 | 65398055 | 65397944 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65397485 | 65397570 | 65397485 | ID=MS.gene07298.t1.exon5;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65397485 | 65397570 | 65397485 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65397185 | 65397340 | 65397185 | ID=MS.gene07298.t1.exon6;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65397185 | 65397340 | 65397185 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65397054 | 65397101 | 65397054 | ID=MS.gene07298.t1.exon7;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65397054 | 65397101 | 65397054 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65396903 | 65396962 | 65396903 | ID=MS.gene07298.t1.exon8;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65396903 | 65396962 | 65396903 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65396029 | 65396522 | 65396029 | ID=MS.gene07298.t1.exon9;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65396029 | 65396522 | 65396029 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65395279 | 65395432 | 65395279 | ID=MS.gene07298.t1.exon10;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65395279 | 65395432 | 65395279 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65394180 | 65394400 | 65394180 | ID=MS.gene07298.t1.exon11;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65394180 | 65394400 | 65394180 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65393604 | 65393735 | 65393604 | ID=MS.gene07298.t1.exon12;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65393604 | 65393735 | 65393604 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65391864 | 65391951 | 65391864 | ID=MS.gene07298.t1.exon13;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65391864 | 65391951 | 65391864 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65391683 | 65391752 | 65391683 | ID=MS.gene07298.t1.exon14;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65391683 | 65391752 | 65391683 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65391499 | 65391596 | 65391499 | ID=MS.gene07298.t1.exon15;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65391499 | 65391596 | 65391499 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65391165 | 65391272 | 65391165 | ID=MS.gene07298.t1.exon16;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65391165 | 65391272 | 65391165 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
chr1.2 | exon | 65390573 | 65390764 | 65390573 | ID=MS.gene07298.t1.exon17;Parent=MS.gene07298.t1 |
chr1.2 | CDS | 65390573 | 65390764 | 65390573 | ID=cds.MS.gene07298.t1;Parent=MS.gene07298.t1 |
Gene Sequence |
Protein sequence |