AlfalfaGEDB | MS.gene073529

M. sativa cultivar XinJiangDaYe / MS.gene073529

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00004.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073529.t1	XP_003604901.1	98.9	476	5	0	1	476	1	476	3.80E-272	946.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073529.t1	Q7X9A0	80.8	479	86	5	1	476	1	476	3.7e-223	775.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073529.t1	G7JTD2	98.9	476	5	0	1	476	1	476	2.8e-272	946.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049285	MS.gene073529	0.820178	7.87E-53	-1.69E-46
MS.gene049320	MS.gene073529	0.81762	3.00E-52	-1.69E-46
MS.gene049609	MS.gene073529	0.809137	2.20E-50	-1.69E-46
MS.gene050163	MS.gene073529	0.803073	4.15E-49	-1.69E-46
MS.gene050612	MS.gene073529	0.808275	3.35E-50	-1.69E-46
MS.gene050772	MS.gene073529	0.835096	2.05E-56	-1.69E-46
MS.gene051810	MS.gene073529	0.839035	2.02E-57	-1.69E-46
MS.gene052271	MS.gene073529	0.802241	6.16E-49	-1.69E-46
MS.gene052916	MS.gene073529	0.814769	1.30E-51	-1.69E-46
MS.gene053213	MS.gene073529	0.834595	2.74E-56	-1.69E-46

Showing 1 to 10 of 28 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073529.t1	MTR_4g021210	98.950	476	5	0	1	476	1	476	0.0	978
MS.gene073529.t1	MTR_5g080450	81.513	476	87	1	1	476	1	475	0.0	825
MS.gene073529.t1	MTR_3g068030	82.192	438	75	3	1	437	1	436	0.0	748
MS.gene073529.t1	MTR_3g068030	83.452	423	68	2	16	437	1	422	0.0	738
MS.gene073529.t1	MTR_2g105480	54.110	292	127	6	134	419	123	413	2.62e-109	330
MS.gene073529.t1	MTR_2g105480	60.262	229	87	4	134	359	123	350	3.71e-97	297
MS.gene073529.t1	MTR_2g105480	65.730	178	57	4	134	308	123	299	8.00e-77	243
MS.gene073529.t1	MTR_0373s0020	100.000	28	0	0	439	466	11	38	2.98e-13	67.4

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073529.t1	AT2G39730	78.826	477	97	2	1	476	1	474	0.0	784
MS.gene073529.t1	AT2G39730	78.076	447	94	2	1	446	1	444	0.0	726
MS.gene073529.t1	AT2G39730	78.912	441	89	2	1	440	1	438	0.0	724
MS.gene073529.t1	AT1G73110	51.724	319	145	7	107	419	15	330	1.25e-110	331
MS.gene073529.t1	AT1G73110	52.564	312	139	7	114	419	119	427	2.59e-109	331

Showing 1 to 5 of 5 entries

Previous1Next

Find 120 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAACGGCTCTAGCAG+TGG	0.620869	4.1:+76936235	MS.gene073529:CDS
AAGAACAAGAGAATGTGAAG+AGG	0.574498	4.1:+76938478	MS.gene073529:CDS
AAGACTTGTGAATTCAAAAG+AGG	0.535398	4.1:+76938386	MS.gene073529:CDS
AAGATTGTCGACACATTCCC+TGG	0.416886	4.1:+76937874	MS.gene073529:CDS
AAGGGTCAGCGCAACCTTCT+TGG	0.331258	4.1:-76938753	None:intergenic
AATATGGACAACACAATAGA+TGG	0.441782	4.1:+76937079	MS.gene073529:CDS
AATGACGATGCTATCAAGAC+TGG	0.527194	4.1:+76938549	MS.gene073529:CDS
AATGATCTTGATGCAGGAGC+TGG	0.538362	4.1:+76937562	MS.gene073529:CDS
AATGATGAGTGCCGGAGAAT+TGG	0.354739	4.1:+76937441	MS.gene073529:CDS
AATTGTTGGAGCCATTAACA+TGG	0.617506	4.1:+76935576	MS.gene073529:CDS

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGACTTGTGAATTCAAAAG+AGG	+	chr4.1:76938386-76938405	MS.gene073529:CDS	30.0%
AATATGGACAACACAATAGA+TGG	+	chr4.1:76937079-76937098	MS.gene073529:CDS	30.0%
AATCTGGATTTGATATGTTC+AGG	+	chr4.1:76937053-76937072	MS.gene073529:intron	30.0%
AATGAAAATTGGAACAGACT+CGG	-	chr4.1:76936155-76936174	None:intergenic	30.0%
AATGATCTGAAAACAGCTTA+CGG	-	chr4.1:76938034-76938053	None:intergenic	30.0%
ACTAGAATACGGAAATATGT+TGG	+	chr4.1:76938452-76938471	MS.gene073529:CDS	30.0%
AGACTTGTGAATTCAAAAGA+GGG	+	chr4.1:76938387-76938406	MS.gene073529:CDS	30.0%
AGGTGCATCATGTATATTAA+CGG	-	chr4.1:76935848-76935867	None:intergenic	30.0%
AGTCATGGTTTCAAAAGAAA+AGG	-	chr4.1:76936084-76936103	None:intergenic	30.0%
ATAAGGTGAAATGAACTTAC+TGG	-	chr4.1:76936555-76936574	None:intergenic	30.0%

Showing 1 to 10 of 219 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	76935559	76938837	76935559	ID=MS.gene073529
chr4.1	mRNA	76935559	76938837	76935559	ID=MS.gene073529.t1;Parent=MS.gene073529
chr4.1	exon	76935559	76935603	76935559	ID=MS.gene073529.t1.exon1;Parent=MS.gene073529.t1
chr4.1	CDS	76935559	76935603	76935559	ID=cds.MS.gene073529.t1;Parent=MS.gene073529.t1
chr4.1	exon	76936232	76936554	76936232	ID=MS.gene073529.t1.exon2;Parent=MS.gene073529.t1
chr4.1	CDS	76936232	76936554	76936232	ID=cds.MS.gene073529.t1;Parent=MS.gene073529.t1
chr4.1	exon	76937075	76937266	76937075	ID=MS.gene073529.t1.exon3;Parent=MS.gene073529.t1
chr4.1	CDS	76937075	76937266	76937075	ID=cds.MS.gene073529.t1;Parent=MS.gene073529.t1
chr4.1	exon	76937435	76937907	76937435	ID=MS.gene073529.t1.exon4;Parent=MS.gene073529.t1
chr4.1	CDS	76937435	76937907	76937435	ID=cds.MS.gene073529.t1;Parent=MS.gene073529.t1
chr4.1	exon	76938301	76938582	76938301	ID=MS.gene073529.t1.exon5;Parent=MS.gene073529.t1
chr4.1	CDS	76938301	76938582	76938301	ID=cds.MS.gene073529.t1;Parent=MS.gene073529.t1
chr4.1	exon	76938722	76938837	76938722	ID=MS.gene073529.t1.exon6;Parent=MS.gene073529.t1
chr4.1	CDS	76938722	76938837	76938722	ID=cds.MS.gene073529.t1;Parent=MS.gene073529.t1

Gene Sequence

>MS.gene073529

ATGGCAACTTCTGTGACAATTGTTGGAGCCATTAACATGGCACAGGTAGAATGCTTCTCTTAACAAACTTTGGTCTAGTCAATAGATAGAACATATTTTGCTTCACTAATGCTTTTGATTATTGATATTGTTTCTAATATTTTCTCTTTTTTAAGTATATTACTATATACATAAAAAAAAATTGGCCATTCTTATGTCCAAGATGTGCTAGATTAGCAATAAGAGTTTGGCCATGCAACCTCAAGGGATAGAGTTCAAATCCCCTCGGGGCACGGTAGTAAAATAACCGTTAATATACATGATGCACCTTCTATTATGTATCTATTTGTATGAGTGTTAATAGGAGTAGATTGTGAGCTCACTTATCTGTAAGATTTTAGATCGCAACAGAAGTCGCATTCCAATCTTTTGATATCGTGGAGAATTGTAGTCAAATGCAACTAATGCAGCCTCAACCGCGTCCAAGTTGTGAGCGCGGAGACATAAAAACATTGATATAACAGTCCAAATTGCAGCTGCAAACCTTTTCTTTTGAAACCATGACTCTAAGTCTGTAGTCTATACTCTATATAGATGTGTTTGATTACTTTCATCCGAGTCTGTTCCAATTTTCATTCAATTTGGAGTTTATGGTTAATTGAGGACTAATAACGGTCTATAACAATGTATGCAGTTGAAATTGAACGGCTCTAGCAGTGGAGTTCCTATGACAAATTCAGCATTTTTCGGAACATACCTTAAGAAAGCTAGTTCTGCGATTTCCAGCCAGAAGAGTTTGTCTGGTAACTTTAAGGTTTCGGCAAAAATTGACTATAATGAGGAAAAGCAGACCTCAAAGGACAGATGGGCTGGACTTGCATATGACACCTCAGATGACCAACAGGATATCACAAGGGGAAAGGGAAAGGTGGACAGTGTCTTTCAAGCTCCAACGGATGCTGGAACTCACTATGCTGTCATGAGTTCCTATGATTATATCAGTACCGGTCTTCGCCAGTAAGTTCATTTCACCTTATTTCAGTTAACAAAGATTTGAAGCTCATGTTTTGAACACCGAAGTGTTATCATTTTATGTACTTGGTGAATGCTAATTTACTTATTCTTAGGCACATGGTTATCAGTATCTTACGATATATGGTTATCAGTATCTCGATTCAATACAAAACAAAATCCAATTGATACAAATATCTACTATGAACATGAATCTGATCTTCAGTCTCGATTCATTGTGATGAACCACGATTCACAGTGATGATTCTCATTCATTCTAATGAATCACTACCTAAACTTGTTGTAGTCTGCCCTTTTGATAAAATTTTCTGTAGCACTTTTCCTGTATTATTTGATTTATGGCTTAAATTTTGAATTATTTTGAGGCTGGTAGATGATATTCTAGGTTATAATATGGCTATGTCACCTGTTCTTGCTTAAAAATGTCATATTCTAATTGATAGTGTGTCTTAGGATTCATAATAAGATTTGATTCACGATTTGAATCTGGATTTGATATGTTCAGGTACAATATGGACAACACAATAGATGGCTTGTATATTGCACCTGCATTTATGGACAAGCTTGTTGTTCACATCACTAAGAACTTTCTCAACTTGCCAAATATTAAGATTCCTCTCATTTTGGGCATTTGGGGAGGCAAAGGTCAAGGAAAGTCATTTCAATGTGAGCTTGTCTTTGCCAAGATGGGAATAAGGTAAAAAGAAATTTGACAGGCAAATGTTAGCACACACGCACACACAAACACAAACACAAACACACACACACACACGCTAACTATGATACTTGGCTTAGGAGTAGGTGCAATTAAGACGAAATTGACACTCAGTTACTAACTCTTTTATCTACTTCCTTGGAAATTTAGCCCTATAATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCTGCAAAGTTGATTAGGCAAAGGTACCGTGAGGCGTCCGACATTATCAGAAAAGGAAAGATGTGCTGTCTCTTCATCAATGATCTTGATGCAGGAGCTGGTAGAATGGGTGGCACTACTCAATACACAGTCAATAACCAGATGGTAAATGCAACCCTCATGAACATTGCTGACAACCCTACCAATGTTCAACTTCCCGGTATGTACAACAAAGAAGAGAACGCCCGTGTTCCTATCATCGTCACTGGAAATGACTTCTCTACGCTGTATGCTCCTTTAATTCGTGATGGACGTATGGAAAAATTCTATTGGGCGCCTACTCGTGATGATAGGGTTGGTGTATGTCAAGGTATTTTCAGGACAGATGGTGTCCCTAAGGATGACATTGTCAAGATTGTCGACACATTCCCTGGACAGTCAATTGGTAAGCCATAGCTCAATCTAAGTTTCAAGTCAAAATTTCTAGTTACTAGGGTCTGTTTTATCTACTAACAAAAGCACATCTGAGGTTGTTTTTAAGAGTTTGTGAAAACAACTTATGACATGTCCGTAAGCTGTTTTCAGATCATTTTCATAAGTCTCCATGATAGCTTATGCAAACAGCATATAACTTGTATGAACATAGTTTGACTCTATTTTATCTTTTATTATAAAAATAGCTTATGCACAAGAACTTAAATGATAAACTCTTATGCTATAATCGCTAAATTAAGTCTTTTTATGCAAACAAGATCCTTATATTTATTATTAACCATGATATGAGTTCGAGACTTGGATGAAATCTGAATAATCAAATGTTCAATGCATTTCTTTGTAGATTTTTTTGGTGCATTGAGGGCGAGAGTGTATGACGATGAAGTCAGGAATTGGATATCTGGTATTGGTGTGGAGAGTATTGGAAAAAGACTTGTGAATTCAAAAGAGGGACCTCCAACTTTTGAGCAACCAAAGATGACTATTGACAAGCTACTAGAATACGGAAATATGTTGGTCCAAGAACAAGAGAATGTGAAGAGGGTTCAATTAGCTGACAAATACCTCAGTCAGGCAGCTCTTGGAGATGCTAATGACGATGCTATCAAGACTGGAAACTTCTATGGTTAGTCCTTTGATTTTTCTGTTATTATCTTAAAAGGCATCACCTAAAAGTTTGCTTTAGACCTACGACAAATATGTCGTGTCGGTCTTGACAATAACTTGGACTAAAACAAGAATGTTATCTTACTGTTTGGATGCAGGACAAGGAGCTCAGCAAGTTCCTTTACCTGTCCAAGAAGGTTGCGCTGACCCTTCTGCAGAAAACTATGATCCGACAGCCAGAAGTGACGATGGAAGTTGCACATACACTTTTTAG

Protein sequence

>MS.gene073529.t1

MATSVTIVGAINMAQLKLNGSSSGVPMTNSAFFGTYLKKASSAISSQKSLSGNFKVSAKIDYNEEKQTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAPTDAGTHYAVMSSYDYISTGLRQYNMDNTIDGLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSQAALGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENYDPTARSDDGSCTYTF