Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073923.t1 | XP_003626313.1 | 91.6 | 274 | 20 | 3 | 1 | 272 | 1 | 273 | 5.60E-135 | 490.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073923.t1 | Q9SYY4 | 31.4 | 280 | 159 | 8 | 9 | 265 | 9 | 278 | 1.5e-24 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073923.t1 | Q2HTN1 | 91.6 | 274 | 20 | 3 | 1 | 272 | 1 | 273 | 4.0e-135 | 490.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene073923 | 0.825712 | 4.04E-54 | -1.69E-46 |
| MS.gene050538 | MS.gene073923 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene073923 | 0.812683 | 3.75E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene073923 | 0.803141 | 4.02E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene073923 | 0.804943 | 1.70E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene073923 | 0.805131 | 1.55E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene073923 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene073923 | 0.813284 | 2.77E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene073923 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene053107 | MS.gene073923 | 0.808584 | 2.88E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene073923 | 0.802618 | 5.15E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene073923 | 0.806162 | 9.40E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene073923 | 0.808847 | 2.53E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene073923 | 0.806095 | 9.71E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene073923 | 0.81011 | 1.36E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene073923 | 0.800855 | 1.18E-48 | -1.69E-46 |
| MS.gene054804 | MS.gene073923 | 0.801759 | 7.74E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene073923 | 0.802858 | 4.60E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene073923 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene073923 | 0.804711 | 1.90E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene073923 | 0.801937 | 7.11E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene073923 | 0.811055 | 8.48E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene073923 | 0.802002 | 6.90E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene073923 | 0.828073 | 1.10E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene073923 | 0.815422 | 9.32E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene073923 | 0.825327 | 4.98E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene073923 | 0.817226 | 3.68E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene073923 | 0.833007 | 6.83E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene073923 | 0.815569 | 8.64E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene073923 | 0.809889 | 1.51E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene073923 | 0.816636 | 4.99E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene073923 | 0.840412 | 8.83E-58 | -1.69E-46 |
| MS.gene060804 | MS.gene073923 | 0.822502 | 2.29E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene073923 | 0.802991 | 4.31E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene073923 | 0.836692 | 8.06E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073923.t1 | MTR_7g113780 | 95.255 | 274 | 10 | 3 | 1 | 272 | 1 | 273 | 8.09e-164 | 455 |
| MS.gene073923.t1 | MTR_8g078200 | 34.409 | 279 | 165 | 4 | 9 | 272 | 16 | 291 | 4.76e-42 | 146 |
| MS.gene073923.t1 | MTR_3g111610 | 33.803 | 284 | 158 | 7 | 9 | 272 | 15 | 288 | 6.93e-40 | 140 |
| MS.gene073923.t1 | MTR_5g019330 | 33.562 | 292 | 156 | 8 | 1 | 268 | 1 | 278 | 1.66e-38 | 137 |
| MS.gene073923.t1 | MTR_1g021915 | 32.178 | 202 | 116 | 5 | 9 | 193 | 9 | 206 | 5.38e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073923.t1 | AT3G06470 | 56.777 | 273 | 106 | 4 | 9 | 272 | 8 | 277 | 4.40e-100 | 294 |
| MS.gene073923.t1 | AT3G06460 | 51.908 | 262 | 116 | 5 | 9 | 263 | 8 | 266 | 3.19e-85 | 257 |
| MS.gene073923.t1 | AT1G75000 | 30.903 | 288 | 150 | 6 | 10 | 265 | 5 | 275 | 9.76e-38 | 134 |
| MS.gene073923.t1 | AT4G36830 | 31.095 | 283 | 142 | 10 | 16 | 265 | 16 | 278 | 6.72e-32 | 119 |
| MS.gene073923.t1 | AT4G36830 | 31.111 | 270 | 133 | 10 | 9 | 245 | 9 | 258 | 5.75e-27 | 107 |
Find 105 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGGTCCCCTCTTCTTC+TGG | 0.138928 | 1.1:-28582923 | MS.gene073923:CDS |
| CTCCATCCTCTCCCTCATTA+TGG | 0.310997 | 1.1:-28583024 | MS.gene073923:CDS |
| GAGAGTGAGGGAGAGATAAA+AGG | 0.313559 | 1.1:+28583121 | None:intergenic |
| AGTACTGGTGGTGGATGCTC+TGG | 0.317198 | 1.1:-28582567 | MS.gene073923:CDS |
| CATGTGAAATTTAGAATGTT+TGG | 0.317423 | 1.1:+28583197 | None:intergenic |
| AAATGGTCCCCTCTTCTTCT+GGG | 0.334002 | 1.1:-28582922 | MS.gene073923:CDS |
| CTCTCCCTCATTATGGCTAT+TGG | 0.337974 | 1.1:-28583017 | MS.gene073923:CDS |
| TGAGGTGGGATGGGTGGGAG+AGG | 0.346076 | 1.1:+28583086 | None:intergenic |
| GGATGGGTGGGAGAGGGAAG+AGG | 0.354642 | 1.1:+28583093 | None:intergenic |
| GTGGGTTAGGATGGTGAGGG+AGG | 0.363724 | 1.1:+28582992 | None:intergenic |
| CAGATGGTGGAGCGGAGGTT+GGG | 0.377434 | 1.1:+28582966 | None:intergenic |
| ATGGGTGGGAGAGGGAAGAG+GGG | 0.383793 | 1.1:+28583095 | None:intergenic |
| GGATGGAGAGGATGAGGTTG+TGG | 0.388690 | 1.1:+28583039 | None:intergenic |
| TTGAGGAAGTGAGGTGGGAT+GGG | 0.392543 | 1.1:+28583077 | None:intergenic |
| GGAAGAGGGGAAGGAGAGTG+AGG | 0.392647 | 1.1:+28583108 | None:intergenic |
| CAGAAGAAGAGGGGACCATT+TGG | 0.395586 | 1.1:+28582924 | None:intergenic |
| TCCCTATCATGTGTTATCTA+TGG | 0.395738 | 1.1:-28582788 | MS.gene073923:CDS |
| GAGTTGGTAAGAAGTGCAAT+AGG | 0.397860 | 1.1:+28582741 | None:intergenic |
| TGAACGTCACTAGTCTTTAT+CGG | 0.399920 | 1.1:+28582440 | None:intergenic |
| AGGAAAGAAAGGGATGAGGC+TGG | 0.403020 | 1.1:+28583158 | None:intergenic |
| GTGGGAGAGGGAAGAGGGGA+AGG | 0.405493 | 1.1:+28583099 | None:intergenic |
| AGATGGTGGAGCGGAGGTTG+GGG | 0.415422 | 1.1:+28582967 | None:intergenic |
| GAGGAATGAGAGACGTTTGA+TGG | 0.423143 | 1.1:+28582833 | None:intergenic |
| GGGTGTGGGTTAGGATGGTG+AGG | 0.424795 | 1.1:+28582988 | None:intergenic |
| GAGGTTGTGGAGTGCGGTGA+AGG | 0.426675 | 1.1:+28583052 | None:intergenic |
| TGGAAAGAGAGAGGAAAGAA+AGG | 0.434953 | 1.1:+28583147 | None:intergenic |
| TTTGAGGAAGTGAGGTGGGA+TGG | 0.438957 | 1.1:+28583076 | None:intergenic |
| AGCCATAGATAACACATGAT+AGG | 0.441743 | 1.1:+28582786 | None:intergenic |
| GCAGATGGTGGAGCGGAGGT+TGG | 0.442514 | 1.1:+28582965 | None:intergenic |
| GTGTTCAGCTTCGCCGTCTC+CGG | 0.442875 | 1.1:-28582618 | MS.gene073923:CDS |
| GGGAGAGGATGGAGAGGATG+AGG | 0.450488 | 1.1:+28583033 | None:intergenic |
| TTGGCAGAATCCTTCAACAT+TGG | 0.451434 | 1.1:-28583232 | MS.gene073923:CDS |
| AGGGATGAGGCTGGAGTGTG+AGG | 0.456623 | 1.1:+28583167 | None:intergenic |
| AGAGCATCCACCACCAGTAC+TGG | 0.464465 | 1.1:+28582569 | None:intergenic |
| GACGTTTGATGGATCTCAAA+AGG | 0.471676 | 1.1:+28582844 | None:intergenic |
| GAAGAGGGGAAGGAGAGTGA+GGG | 0.473348 | 1.1:+28583109 | None:intergenic |
| TGAACACGAACTGAACAATC+TGG | 0.475700 | 1.1:+28582634 | None:intergenic |
| TACTACTTCCTCACCACTGT+TGG | 0.476064 | 1.1:-28582693 | MS.gene073923:CDS |
| AGGAAGTGAGGTGGGATGGG+TGG | 0.477567 | 1.1:+28583080 | None:intergenic |
| CTCATGCTTTATTATCACTT+CGG | 0.480515 | 1.1:-28582594 | MS.gene073923:CDS |
| GATGGGTGGGAGAGGGAAGA+GGG | 0.481622 | 1.1:+28583094 | None:intergenic |
| GATGCTCTGGGATGAAAGCT+TGG | 0.486306 | 1.1:-28582554 | MS.gene073923:CDS |
| AGTTGGTAAGAAGTGCAATA+GGG | 0.487218 | 1.1:+28582742 | None:intergenic |
| GAGGTGGGATGGGTGGGAGA+GGG | 0.487875 | 1.1:+28583087 | None:intergenic |
| TATCACTTCGGATCCAGTAC+TGG | 0.500674 | 1.1:-28582582 | MS.gene073923:CDS |
| GATGAGGCTGGAGTGTGAGG+AGG | 0.502414 | 1.1:+28583170 | None:intergenic |
| GAGGGAGAGATAAAAGGCTA+TGG | 0.508066 | 1.1:+28583127 | None:intergenic |
| GGAAAGAGAGAGGAAAGAAA+GGG | 0.514238 | 1.1:+28583148 | None:intergenic |
| GGAAGTGAGGTGGGATGGGT+GGG | 0.514653 | 1.1:+28583081 | None:intergenic |
| CCTCTTCATACCCCTCCAAA+TGG | 0.515262 | 1.1:-28582939 | MS.gene073923:CDS |
| AGAGAGGAAAGAAAGGGATG+AGG | 0.524383 | 1.1:+28583154 | None:intergenic |
| GCCATAGATAACACATGATA+GGG | 0.526666 | 1.1:+28582787 | None:intergenic |
| AGCCATAATGAGGGAGAGGA+TGG | 0.527649 | 1.1:+28583022 | None:intergenic |
| GATGGTGGAGCGGAGGTTGG+GGG | 0.528775 | 1.1:+28582968 | None:intergenic |
| TGTTGAAGGATTCTGCCAAT+GGG | 0.532924 | 1.1:+28583236 | None:intergenic |
| TGATAGGGACGGTGGAATGA+TGG | 0.533402 | 1.1:+28582802 | None:intergenic |
| TCGGTAACGACGCGTTTCCA+CGG | 0.536456 | 1.1:+28582660 | None:intergenic |
| GTACTGGTGGTGGATGCTCT+GGG | 0.537624 | 1.1:-28582566 | MS.gene073923:CDS |
| AGATGTAGGCCCAGAAGAAG+AGG | 0.540490 | 1.1:+28582913 | None:intergenic |
| AGGGTTTGAGGAAGTGAGGT+GGG | 0.541375 | 1.1:+28583072 | None:intergenic |
| TTCGGATCCAGTACTGGTGG+TGG | 0.542647 | 1.1:-28582576 | MS.gene073923:CDS |
| AAGAAGAGGGGACCATTTGG+AGG | 0.542873 | 1.1:+28582927 | None:intergenic |
| GGAAGCAGATGGTGGAGCGG+AGG | 0.545303 | 1.1:+28582961 | None:intergenic |
| ATGTTGAAGGATTCTGCCAA+TGG | 0.545351 | 1.1:+28583235 | None:intergenic |
| GGTAGAGTAGCCAATGTTGA+AGG | 0.550736 | 1.1:+28583222 | None:intergenic |
| ATGAGGCTGGAGTGTGAGGA+GGG | 0.554548 | 1.1:+28583171 | None:intergenic |
| GGAGTGCGGTGAAGGGTTTG+AGG | 0.557377 | 1.1:+28583060 | None:intergenic |
| AAAAGGCTATGGAAAGAGAG+AGG | 0.557470 | 1.1:+28583138 | None:intergenic |
| GTGATAATAAAGCATGAGAC+CGG | 0.563667 | 1.1:+28582599 | None:intergenic |
| AGAAGAGGGGACCATTTGGA+GGG | 0.565317 | 1.1:+28582928 | None:intergenic |
| CAATAGCCATAATGAGGGAG+AGG | 0.566959 | 1.1:+28583018 | None:intergenic |
| AGGTGCCAATAGCCATAATG+AGG | 0.568133 | 1.1:+28583012 | None:intergenic |
| GATGTAGGCCCAGAAGAAGA+GGG | 0.570108 | 1.1:+28582914 | None:intergenic |
| GTGAAGGGTTTGAGGAAGTG+AGG | 0.573391 | 1.1:+28583068 | None:intergenic |
| AGGTTGTGGAGTGCGGTGAA+GGG | 0.575003 | 1.1:+28583053 | None:intergenic |
| CCATTTGGAGGGGTATGAAG+AGG | 0.575261 | 1.1:+28582939 | None:intergenic |
| CAAACATTCTAAATTTCACA+TGG | 0.578086 | 1.1:-28583196 | MS.gene073923:CDS |
| GGTGTGGGTTAGGATGGTGA+GGG | 0.579431 | 1.1:+28582989 | None:intergenic |
| AAGGGTTTGAGGAAGTGAGG+TGG | 0.580580 | 1.1:+28583071 | None:intergenic |
| CATTTGGAGGGGTATGAAGA+GGG | 0.584012 | 1.1:+28582940 | None:intergenic |
| GAGGGAAGCAGATGGTGGAG+CGG | 0.587376 | 1.1:+28582958 | None:intergenic |
| CGACGCGTTTCCACGGCGGT+CGG | 0.590079 | 1.1:+28582667 | None:intergenic |
| GAGGATGAGGTTGTGGAGTG+CGG | 0.590535 | 1.1:+28583046 | None:intergenic |
| GGTATGAAGAGGGAAGCAGA+TGG | 0.613222 | 1.1:+28582950 | None:intergenic |
| ATAAAGCATGAGACCGGAGA+CGG | 0.617252 | 1.1:+28582605 | None:intergenic |
| TGAAATTTAGAATGTTTGGA+TGG | 0.618798 | 1.1:+28583201 | None:intergenic |
| CACTTCGGATCCAGTACTGG+TGG | 0.625047 | 1.1:-28582579 | MS.gene073923:CDS |
| GTCGGATTCCAACAGTGGTG+AGG | 0.628146 | 1.1:+28582685 | None:intergenic |
| CGGTGGAATGATGGTACACG+TGG | 0.631074 | 1.1:+28582811 | None:intergenic |
| ATGAAGAGGGAAGCAGATGG+TGG | 0.631390 | 1.1:+28582953 | None:intergenic |
| CGGCGGTCGGATTCCAACAG+TGG | 0.641832 | 1.1:+28582680 | None:intergenic |
| TAATGAGGGAGAGGATGGAG+AGG | 0.644404 | 1.1:+28583027 | None:intergenic |
| GATGACGTGGACGGATGAGT+TGG | 0.645959 | 1.1:+28582725 | None:intergenic |
| AGGTGAATGGAAAATCCCAT+TGG | 0.650362 | 1.1:-28583251 | None:intergenic |
| AGAGTACATGATGACGTGGA+CGG | 0.658163 | 1.1:+28582716 | None:intergenic |
| GAACTGAACAATCTGGCAGT+CGG | 0.662736 | 1.1:+28582641 | None:intergenic |
| ATGTAGGCCCAGAAGAAGAG+GGG | 0.663955 | 1.1:+28582915 | None:intergenic |
| TGGAATGATGGTACACGTGG+AGG | 0.666407 | 1.1:+28582814 | None:intergenic |
| TAGATAACACATGATAGGGA+CGG | 0.677431 | 1.1:+28582791 | None:intergenic |
| GGTGCCAATAGCCATAATGA+GGG | 0.679843 | 1.1:+28583013 | None:intergenic |
| GAAGAGGGGACCATTTGGAG+GGG | 0.685233 | 1.1:+28582929 | None:intergenic |
| ATAACACATGATAGGGACGG+TGG | 0.698770 | 1.1:+28582794 | None:intergenic |
| AGTAAGAGTACATGATGACG+TGG | 0.708386 | 1.1:+28582712 | None:intergenic |
| CTGTTGGAATCCGACCGCCG+TGG | 0.731632 | 1.1:-28582677 | MS.gene073923:CDS |
| GTAACGACGCGTTTCCACGG+CGG | 0.765126 | 1.1:+28582663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAAACATTCTAAATTTCACA+TGG | - | chr1.1:28582498-28582517 | MS.gene073923:CDS | 25.0% |
| !! | CATGTGAAATTTAGAATGTT+TGG | + | chr1.1:28582500-28582519 | None:intergenic | 25.0% |
| !! | TGAAATTTAGAATGTTTGGA+TGG | + | chr1.1:28582496-28582515 | None:intergenic | 25.0% |
| !!! | TGAATTCAAGATATTTTGAG+AGG | + | chr1.1:28582811-28582830 | None:intergenic | 25.0% |
| !!! | TGTTTTTAATGCTTCTCTTT+TGG | - | chr1.1:28583174-28583193 | MS.gene073923:CDS | 25.0% |
| ! | CTCATGCTTTATTATCACTT+CGG | - | chr1.1:28583100-28583119 | MS.gene073923:CDS | 30.0% |
| AGCCATAGATAACACATGAT+AGG | + | chr1.1:28582911-28582930 | None:intergenic | 35.0% | |
| GCCATAGATAACACATGATA+GGG | + | chr1.1:28582910-28582929 | None:intergenic | 35.0% | |
| GTGATAATAAAGCATGAGAC+CGG | + | chr1.1:28583098-28583117 | None:intergenic | 35.0% | |
| TAGATAACACATGATAGGGA+CGG | + | chr1.1:28582906-28582925 | None:intergenic | 35.0% | |
| TCCCTATCATGTGTTATCTA+TGG | - | chr1.1:28582906-28582925 | MS.gene073923:CDS | 35.0% | |
| !! | AGTTGGTAAGAAGTGCAATA+GGG | + | chr1.1:28582955-28582974 | None:intergenic | 35.0% |
| !! | TTTTGAGAGGTAGAAGATGT+AGG | + | chr1.1:28582798-28582817 | None:intergenic | 35.0% |
| AAAAGGCTATGGAAAGAGAG+AGG | + | chr1.1:28582559-28582578 | None:intergenic | 40.0% | |
| ATGTTGAAGGATTCTGCCAA+TGG | + | chr1.1:28582462-28582481 | None:intergenic | 40.0% | |
| GGAAAGAGAGAGGAAAGAAA+GGG | + | chr1.1:28582549-28582568 | None:intergenic | 40.0% | |
| TGAACACGAACTGAACAATC+TGG | + | chr1.1:28583063-28583082 | None:intergenic | 40.0% | |
| TGGAAAGAGAGAGGAAAGAA+AGG | + | chr1.1:28582550-28582569 | None:intergenic | 40.0% | |
| TGTTGAAGGATTCTGCCAAT+GGG | + | chr1.1:28582461-28582480 | None:intergenic | 40.0% | |
| TTGGCAGAATCCTTCAACAT+TGG | - | chr1.1:28582462-28582481 | MS.gene073923:CDS | 40.0% | |
| ! | AGTAAGAGTACATGATGACG+TGG | + | chr1.1:28582985-28583004 | None:intergenic | 40.0% |
| ! | GACGTTTGATGGATCTCAAA+AGG | + | chr1.1:28582853-28582872 | None:intergenic | 40.0% |
| !! | GAGTTGGTAAGAAGTGCAAT+AGG | + | chr1.1:28582956-28582975 | None:intergenic | 40.0% |
| AAATGGTCCCCTCTTCTTCT+GGG | - | chr1.1:28582772-28582791 | MS.gene073923:CDS | 45.0% | |
| AGAGAGGAAAGAAAGGGATG+AGG | + | chr1.1:28582543-28582562 | None:intergenic | 45.0% | |
| AGGTGCCAATAGCCATAATG+AGG | + | chr1.1:28582685-28582704 | None:intergenic | 45.0% | |
| ATAAAGCATGAGACCGGAGA+CGG | + | chr1.1:28583092-28583111 | None:intergenic | 45.0% | |
| ATAACACATGATAGGGACGG+TGG | + | chr1.1:28582903-28582922 | None:intergenic | 45.0% | |
| CAATAGCCATAATGAGGGAG+AGG | + | chr1.1:28582679-28582698 | None:intergenic | 45.0% | |
| CTCTCCCTCATTATGGCTAT+TGG | - | chr1.1:28582677-28582696 | MS.gene073923:CDS | 45.0% | |
| GAACTGAACAATCTGGCAGT+CGG | + | chr1.1:28583056-28583075 | None:intergenic | 45.0% | |
| GAGAGTGAGGGAGAGATAAA+AGG | + | chr1.1:28582576-28582595 | None:intergenic | 45.0% | |
| GAGGAATGAGAGACGTTTGA+TGG | + | chr1.1:28582864-28582883 | None:intergenic | 45.0% | |
| GAGGGAGAGATAAAAGGCTA+TGG | + | chr1.1:28582570-28582589 | None:intergenic | 45.0% | |
| GGTAGAGTAGCCAATGTTGA+AGG | + | chr1.1:28582475-28582494 | None:intergenic | 45.0% | |
| GGTGCCAATAGCCATAATGA+GGG | + | chr1.1:28582684-28582703 | None:intergenic | 45.0% | |
| TACTACTTCCTCACCACTGT+TGG | - | chr1.1:28583001-28583020 | MS.gene073923:CDS | 45.0% | |
| TATCACTTCGGATCCAGTAC+TGG | - | chr1.1:28583112-28583131 | MS.gene073923:CDS | 45.0% | |
| ! | AGAGTACATGATGACGTGGA+CGG | + | chr1.1:28582981-28583000 | None:intergenic | 45.0% |
| ! | CATTTGGAGGGGTATGAAGA+GGG | + | chr1.1:28582757-28582776 | None:intergenic | 45.0% |
| AAGAAGAGGGGACCATTTGG+AGG | + | chr1.1:28582770-28582789 | None:intergenic | 50.0% | |
| AAGGGTTTGAGGAAGTGAGG+TGG | + | chr1.1:28582626-28582645 | None:intergenic | 50.0% | |
| AGAAGAGGGGACCATTTGGA+GGG | + | chr1.1:28582769-28582788 | None:intergenic | 50.0% | |
| AGATGTAGGCCCAGAAGAAG+AGG | + | chr1.1:28582784-28582803 | None:intergenic | 50.0% | |
| AGCCATAATGAGGGAGAGGA+TGG | + | chr1.1:28582675-28582694 | None:intergenic | 50.0% | |
| AGGAAAGAAAGGGATGAGGC+TGG | + | chr1.1:28582539-28582558 | None:intergenic | 50.0% | |
| AGGGTTTGAGGAAGTGAGGT+GGG | + | chr1.1:28582625-28582644 | None:intergenic | 50.0% | |
| ATGAAGAGGGAAGCAGATGG+TGG | + | chr1.1:28582744-28582763 | None:intergenic | 50.0% | |
| ATGTAGGCCCAGAAGAAGAG+GGG | + | chr1.1:28582782-28582801 | None:intergenic | 50.0% | |
| CAAATGGTCCCCTCTTCTTC+TGG | - | chr1.1:28582771-28582790 | MS.gene073923:CDS | 50.0% | |
| CAGAAGAAGAGGGGACCATT+TGG | + | chr1.1:28582773-28582792 | None:intergenic | 50.0% | |
| CCTCTTCATACCCCTCCAAA+TGG | - | chr1.1:28582755-28582774 | MS.gene073923:CDS | 50.0% | |
| CTCCATCCTCTCCCTCATTA+TGG | - | chr1.1:28582670-28582689 | MS.gene073923:CDS | 50.0% | |
| GATGTAGGCCCAGAAGAAGA+GGG | + | chr1.1:28582783-28582802 | None:intergenic | 50.0% | |
| GGTATGAAGAGGGAAGCAGA+TGG | + | chr1.1:28582747-28582766 | None:intergenic | 50.0% | |
| GTGAAGGGTTTGAGGAAGTG+AGG | + | chr1.1:28582629-28582648 | None:intergenic | 50.0% | |
| TAATGAGGGAGAGGATGGAG+AGG | + | chr1.1:28582670-28582689 | None:intergenic | 50.0% | |
| TGATAGGGACGGTGGAATGA+TGG | + | chr1.1:28582895-28582914 | None:intergenic | 50.0% | |
| TGGAATGATGGTACACGTGG+AGG | + | chr1.1:28582883-28582902 | None:intergenic | 50.0% | |
| TTGAGGAAGTGAGGTGGGAT+GGG | + | chr1.1:28582620-28582639 | None:intergenic | 50.0% | |
| TTTGAGGAAGTGAGGTGGGA+TGG | + | chr1.1:28582621-28582640 | None:intergenic | 50.0% | |
| ! | CCATTTGGAGGGGTATGAAG+AGG | + | chr1.1:28582758-28582777 | None:intergenic | 50.0% |
| !! | GATGCTCTGGGATGAAAGCT+TGG | - | chr1.1:28583140-28583159 | MS.gene073923:CDS | 50.0% |
| AGGTTGTGGAGTGCGGTGAA+GGG | + | chr1.1:28582644-28582663 | None:intergenic | 55.0% | |
| ATGAGGCTGGAGTGTGAGGA+GGG | + | chr1.1:28582526-28582545 | None:intergenic | 55.0% | |
| CGGTGGAATGATGGTACACG+TGG | + | chr1.1:28582886-28582905 | None:intergenic | 55.0% | |
| GAAGAGGGGAAGGAGAGTGA+GGG | + | chr1.1:28582588-28582607 | None:intergenic | 55.0% | |
| GAAGAGGGGACCATTTGGAG+GGG | + | chr1.1:28582768-28582787 | None:intergenic | 55.0% | |
| GAGGATGAGGTTGTGGAGTG+CGG | + | chr1.1:28582651-28582670 | None:intergenic | 55.0% | |
| GATGACGTGGACGGATGAGT+TGG | + | chr1.1:28582972-28582991 | None:intergenic | 55.0% | |
| GGATGGAGAGGATGAGGTTG+TGG | + | chr1.1:28582658-28582677 | None:intergenic | 55.0% | |
| GTCGGATTCCAACAGTGGTG+AGG | + | chr1.1:28583012-28583031 | None:intergenic | 55.0% | |
| TCGGTAACGACGCGTTTCCA+CGG | + | chr1.1:28583037-28583056 | None:intergenic | 55.0% | |
| ! | AGAGCATCCACCACCAGTAC+TGG | + | chr1.1:28583128-28583147 | None:intergenic | 55.0% |
| ! | CACTTCGGATCCAGTACTGG+TGG | - | chr1.1:28583115-28583134 | MS.gene073923:CDS | 55.0% |
| !! | AGTACTGGTGGTGGATGCTC+TGG | - | chr1.1:28583127-28583146 | MS.gene073923:CDS | 55.0% |
| !! | GGTGTGGGTTAGGATGGTGA+GGG | + | chr1.1:28582708-28582727 | None:intergenic | 55.0% |
| !! | GTACTGGTGGTGGATGCTCT+GGG | - | chr1.1:28583128-28583147 | MS.gene073923:CDS | 55.0% |
| !! | TTCGGATCCAGTACTGGTGG+TGG | - | chr1.1:28583118-28583137 | MS.gene073923:CDS | 55.0% |
| AGGAAGTGAGGTGGGATGGG+TGG | + | chr1.1:28582617-28582636 | None:intergenic | 60.0% | |
| AGGGATGAGGCTGGAGTGTG+AGG | + | chr1.1:28582530-28582549 | None:intergenic | 60.0% | |
| ATGGGTGGGAGAGGGAAGAG+GGG | + | chr1.1:28582602-28582621 | None:intergenic | 60.0% | |
| GAGGTTGTGGAGTGCGGTGA+AGG | + | chr1.1:28582645-28582664 | None:intergenic | 60.0% | |
| GATGAGGCTGGAGTGTGAGG+AGG | + | chr1.1:28582527-28582546 | None:intergenic | 60.0% | |
| GATGGGTGGGAGAGGGAAGA+GGG | + | chr1.1:28582603-28582622 | None:intergenic | 60.0% | |
| GGAAGAGGGGAAGGAGAGTG+AGG | + | chr1.1:28582589-28582608 | None:intergenic | 60.0% | |
| GGAAGTGAGGTGGGATGGGT+GGG | + | chr1.1:28582616-28582635 | None:intergenic | 60.0% | |
| GGAGTGCGGTGAAGGGTTTG+AGG | + | chr1.1:28582637-28582656 | None:intergenic | 60.0% | |
| GGGAGAGGATGGAGAGGATG+AGG | + | chr1.1:28582664-28582683 | None:intergenic | 60.0% | |
| GTAACGACGCGTTTCCACGG+CGG | + | chr1.1:28583034-28583053 | None:intergenic | 60.0% | |
| GTGTTCAGCTTCGCCGTCTC+CGG | - | chr1.1:28583076-28583095 | MS.gene073923:CDS | 60.0% | |
| !! | AGATGGTGGAGCGGAGGTTG+GGG | + | chr1.1:28582730-28582749 | None:intergenic | 60.0% |
| !! | CAGATGGTGGAGCGGAGGTT+GGG | + | chr1.1:28582731-28582750 | None:intergenic | 60.0% |
| !! | GAGGGAAGCAGATGGTGGAG+CGG | + | chr1.1:28582739-28582758 | None:intergenic | 60.0% |
| !! | GGGTGTGGGTTAGGATGGTG+AGG | + | chr1.1:28582709-28582728 | None:intergenic | 60.0% |
| !! | GTGGGTTAGGATGGTGAGGG+AGG | + | chr1.1:28582705-28582724 | None:intergenic | 60.0% |
| !! | GTTGGGGGTGTGGGTTAGGA+TGG | + | chr1.1:28582714-28582733 | None:intergenic | 60.0% |
| CGGCGGTCGGATTCCAACAG+TGG | + | chr1.1:28583017-28583036 | None:intergenic | 65.0% | |
| CTGTTGGAATCCGACCGCCG+TGG | - | chr1.1:28583017-28583036 | MS.gene073923:CDS | 65.0% | |
| GAGGTGGGATGGGTGGGAGA+GGG | + | chr1.1:28582610-28582629 | None:intergenic | 65.0% | |
| GGATGGGTGGGAGAGGGAAG+AGG | + | chr1.1:28582604-28582623 | None:intergenic | 65.0% | |
| GTGGGAGAGGGAAGAGGGGA+AGG | + | chr1.1:28582598-28582617 | None:intergenic | 65.0% | |
| TGAGGTGGGATGGGTGGGAG+AGG | + | chr1.1:28582611-28582630 | None:intergenic | 65.0% | |
| ! | GGAGGTTGGGGGTGTGGGTT+AGG | + | chr1.1:28582718-28582737 | None:intergenic | 65.0% |
| !! | GATGGTGGAGCGGAGGTTGG+GGG | + | chr1.1:28582729-28582748 | None:intergenic | 65.0% |
| !! | GCAGATGGTGGAGCGGAGGT+TGG | + | chr1.1:28582732-28582751 | None:intergenic | 65.0% |
| !! | GGAAGCAGATGGTGGAGCGG+AGG | + | chr1.1:28582736-28582755 | None:intergenic | 65.0% |
| CGACGCGTTTCCACGGCGGT+CGG | + | chr1.1:28583030-28583049 | None:intergenic | 70.0% | |
| TGGAGCGGAGGTTGGGGGTG+TGG | + | chr1.1:28582724-28582743 | None:intergenic | 70.0% | |
| ! | GGAGCGGAGGTTGGGGGTGT+GGG | + | chr1.1:28582723-28582742 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 28582449 | 28583267 | 28582449 | ID=MS.gene073923 |
| chr1.1 | mRNA | 28582449 | 28583267 | 28582449 | ID=MS.gene073923.t1;Parent=MS.gene073923 |
| chr1.1 | exon | 28582449 | 28583267 | 28582449 | ID=MS.gene073923.t1.exon1;Parent=MS.gene073923.t1 |
| chr1.1 | CDS | 28582449 | 28583267 | 28582449 | ID=cds.MS.gene073923.t1;Parent=MS.gene073923.t1 |
| Gene Sequence |
| Protein sequence |
