Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074201.t1 | XP_013451323.1 | 97.8 | 275 | 6 | 0 | 1 | 275 | 1 | 275 | 2.50E-162 | 581.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074201.t1 | Q9ZT29 | 70.7 | 270 | 79 | 0 | 6 | 275 | 2 | 271 | 2.6e-120 | 433.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074201.t1 | A0A072U8F0 | 97.8 | 275 | 6 | 0 | 1 | 275 | 1 | 275 | 1.8e-162 | 581.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene074201 | 0.839272 | 1.75E-57 | -1.69E-46 |
| MS.gene050707 | MS.gene074201 | 0.824109 | 9.64E-54 | -1.69E-46 |
| MS.gene050875 | MS.gene074201 | 0.813578 | 2.38E-51 | -1.69E-46 |
| MS.gene051914 | MS.gene074201 | 0.85298 | 3.23E-61 | -1.69E-46 |
| MS.gene052308 | MS.gene074201 | 0.83747 | 5.10E-57 | -1.69E-46 |
| MS.gene053173 | MS.gene074201 | 0.810065 | 1.39E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene074201 | 0.824422 | 8.14E-54 | -1.69E-46 |
| MS.gene054593 | MS.gene074201 | 0.822748 | 2.01E-53 | -1.69E-46 |
| MS.gene054633 | MS.gene074201 | 0.819484 | 1.13E-52 | -1.69E-46 |
| MS.gene054662 | MS.gene074201 | 0.816848 | 4.48E-52 | -1.69E-46 |
| MS.gene054850 | MS.gene074201 | 0.817645 | 2.96E-52 | -1.69E-46 |
| MS.gene054941 | MS.gene074201 | 0.858333 | 8.86E-63 | -1.69E-46 |
| MS.gene055308 | MS.gene074201 | 0.827227 | 1.76E-54 | -1.69E-46 |
| MS.gene055578 | MS.gene074201 | 0.814925 | 1.20E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene074201 | -0.829859 | 4.07E-55 | -1.69E-46 |
| MS.gene05640 | MS.gene074201 | 0.837205 | 5.96E-57 | -1.69E-46 |
| MS.gene056528 | MS.gene074201 | 0.801727 | 7.85E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene074201 | 0.854691 | 1.04E-61 | -1.69E-46 |
| MS.gene056618 | MS.gene074201 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene057101 | MS.gene074201 | 0.826116 | 3.24E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene074201 | 0.849527 | 3.05E-60 | -1.69E-46 |
| MS.gene057669 | MS.gene074201 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene057717 | MS.gene074201 | 0.815047 | 1.13E-51 | -1.69E-46 |
| MS.gene058128 | MS.gene074201 | 0.882142 | 1.34E-70 | -1.69E-46 |
| MS.gene058853 | MS.gene074201 | 0.8861 | 4.59E-72 | -1.69E-46 |
| MS.gene05926 | MS.gene074201 | 0.843052 | 1.78E-58 | -1.69E-46 |
| MS.gene059616 | MS.gene074201 | 0.845897 | 3.05E-59 | -1.69E-46 |
| MS.gene059699 | MS.gene074201 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene074201 | 0.804242 | 2.37E-49 | -1.69E-46 |
| MS.gene059905 | MS.gene074201 | 0.810877 | 9.27E-51 | -1.69E-46 |
| MS.gene06093 | MS.gene074201 | 0.838967 | 2.10E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074201.t1 | MTR_6g018820 | 97.818 | 275 | 6 | 0 | 1 | 275 | 1 | 275 | 0.0 | 558 |
| MS.gene074201.t1 | MTR_6g018860 | 78.417 | 278 | 57 | 1 | 1 | 275 | 1 | 278 | 3.88e-166 | 461 |
| MS.gene074201.t1 | MTR_6g018900 | 89.947 | 189 | 19 | 0 | 85 | 273 | 1 | 189 | 3.26e-126 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074201.t1 | AT3G02580 | 70.111 | 271 | 79 | 1 | 5 | 273 | 4 | 274 | 3.24e-144 | 406 |
| MS.gene074201.t1 | AT3G02590 | 66.914 | 269 | 87 | 1 | 7 | 273 | 7 | 275 | 2.79e-136 | 386 |
| MS.gene074201.t1 | AT3G02590 | 70.681 | 191 | 54 | 1 | 85 | 273 | 1 | 191 | 5.78e-99 | 288 |
Find 66 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTACTTTACTTCATTTC+TGG | 0.069797 | 6.2:+14962772 | MS.gene074201:CDS |
| ACTTCATTTCTGGTTTCTTT+TGG | 0.223397 | 6.2:+14962782 | MS.gene074201:CDS |
| CGGAAAATTATGGCCTGTTA+TGG | 0.256109 | 6.2:+14965777 | MS.gene074201:CDS |
| TTGTGGAGTTTGGTATTTAT+TGG | 0.257333 | 6.2:+14964378 | MS.gene074201:CDS |
| ATTGCATTCACGGAAAATTA+TGG | 0.261663 | 6.2:+14965767 | MS.gene074201:CDS |
| CGGTTATTTAGCGATGTATA+TGG | 0.295041 | 6.2:+14964352 | MS.gene074201:CDS |
| TGTGGAGTTTGGTATTTATT+GGG | 0.301537 | 6.2:+14964379 | MS.gene074201:CDS |
| AACCGATATTTGTAAGAATA+TGG | 0.304421 | 6.2:-14964213 | None:intergenic |
| GCACCAAGTGTGCAATAAAA+TGG | 0.308135 | 6.2:-14965705 | None:intergenic |
| ACGACATATCGACATAACTA+TGG | 0.318548 | 6.2:+14965826 | MS.gene074201:CDS |
| TCTTATTCATTGAAGGTGTT+TGG | 0.327394 | 6.2:+14965728 | MS.gene074201:CDS |
| TATATGGTTATTGTGGAGTT+TGG | 0.347055 | 6.2:+14964368 | MS.gene074201:CDS |
| TCCGAGTACTTGACAGAAAT+CGG | 0.355089 | 6.2:+14964278 | MS.gene074201:CDS |
| AGCCATATTCTTACAAATAT+CGG | 0.357919 | 6.2:+14964211 | MS.gene074201:CDS |
| AATACTCTCTCCCCGTTTGC+TGG | 0.366450 | 6.2:+14964476 | MS.gene074201:CDS |
| AATATTCATGATTGCATTCA+CGG | 0.374123 | 6.2:+14965757 | MS.gene074201:CDS |
| CAACCAACATTATTTAATCT+AGG | 0.377005 | 6.2:-14964317 | None:intergenic |
| CACTTTGCCTACGTCTTGCT+CGG | 0.384188 | 6.2:-14965896 | None:intergenic |
| TGTAGTTACGAAGCCATGTT+TGG | 0.394197 | 6.2:-14962741 | None:intergenic |
| TGGTAACCAGCTCCCATAAC+AGG | 0.414380 | 6.2:-14965790 | None:intergenic |
| GGAAAATTATGGCCTGTTAT+GGG | 0.443452 | 6.2:+14965778 | MS.gene074201:CDS |
| TTGGTGCTCTTATTCATTGA+AGG | 0.445284 | 6.2:+14965721 | MS.gene074201:CDS |
| TGATGAACTCACCAGCAAAC+GGG | 0.453022 | 6.2:-14964487 | None:intergenic |
| TTATGGCCTGTTATGGGAGC+TGG | 0.456299 | 6.2:+14965784 | MS.gene074201:CDS |
| CGCAATGTTTATCTCCCTAA+AGG | 0.464782 | 6.2:+14962829 | MS.gene074201:CDS |
| TTTCCAACAGTAAATGTAGA+AGG | 0.467553 | 6.2:-14962806 | None:intergenic |
| GTATGGATGGACTGGATGTT+CGG | 0.468875 | 6.2:+14965859 | MS.gene074201:CDS |
| CTAGATTAAATAATGTTGGT+TGG | 0.478213 | 6.2:+14964318 | MS.gene074201:CDS |
| TTGATGAACTCACCAGCAAA+CGG | 0.488354 | 6.2:-14964488 | None:intergenic |
| AGCGATGTATATGGTTATTG+TGG | 0.500046 | 6.2:+14964361 | MS.gene074201:CDS |
| TTTCCTAGATTAAATAATGT+TGG | 0.500472 | 6.2:+14964314 | MS.gene074201:CDS |
| TCAAGCATTACCACATAGCC+TGG | 0.508235 | 6.2:+14965663 | MS.gene074201:CDS |
| GCATGAAGATATTTGTAAAG+TGG | 0.510724 | 6.2:-14964428 | None:intergenic |
| GGTCCTTCTACATTTACTGT+TGG | 0.512202 | 6.2:+14962803 | MS.gene074201:CDS |
| TTGCTTTGAAAGCCATGCAT+TGG | 0.517901 | 6.2:+14964234 | MS.gene074201:CDS |
| CATCGCTAAATAACCGATGT+AGG | 0.521223 | 6.2:-14964345 | None:intergenic |
| ACTTTGCCTACGTCTTGCTC+GGG | 0.523211 | 6.2:-14965895 | None:intergenic |
| AATGCAATCATGAATATTTG+CGG | 0.526336 | 6.2:-14965752 | None:intergenic |
| GTTTGGAAGAACCTTGGAAG+TGG | 0.528851 | 6.2:-14962724 | None:intergenic |
| AGCCATGTTTGGAAGAACCT+TGG | 0.540963 | 6.2:-14962730 | None:intergenic |
| TTCCAAGGTTCTTCCAAACA+TGG | 0.547286 | 6.2:+14962728 | MS.gene074201:CDS |
| CGACATATCGACATAACTAT+GGG | 0.549179 | 6.2:+14965827 | MS.gene074201:CDS |
| ACTATGGGCATTACACCGTA+TGG | 0.549982 | 6.2:+14965842 | MS.gene074201:CDS |
| GTCAAGTACTCGGAAAGAGT+TGG | 0.550740 | 6.2:-14964269 | None:intergenic |
| GCCGATTTCTGTCAAGTACT+CGG | 0.552304 | 6.2:-14964279 | None:intergenic |
| AGTACTTGACAGAAATCGGC+TGG | 0.557300 | 6.2:+14964282 | MS.gene074201:CDS |
| TGGCTTCGTAACTACATTGG+TGG | 0.561043 | 6.2:+14962748 | MS.gene074201:CDS |
| TGTCTTCAATGAAGAGAGTA+CGG | 0.567028 | 6.2:-14962645 | None:intergenic |
| TGGGCATTACACCGTATGGA+TGG | 0.570853 | 6.2:+14965846 | MS.gene074201:CDS |
| AAGTGTGCAATAAAATGGAC+TGG | 0.574144 | 6.2:-14965700 | None:intergenic |
| CTGGAACAATAAACAAAGCC+AGG | 0.574481 | 6.2:-14965681 | None:intergenic |
| TAAGAATATGGCTCTACGTG+AGG | 0.584180 | 6.2:-14964201 | None:intergenic |
| ATTACACCGTATGGATGGAC+TGG | 0.587497 | 6.2:+14965851 | MS.gene074201:CDS |
| GCTTGAAGTATTCCATCAAG+AGG | 0.592313 | 6.2:-14965646 | None:intergenic |
| ATAAACAAAGCCAGGCTATG+TGG | 0.593129 | 6.2:-14965673 | None:intergenic |
| TTTGGAAGAACCTTGGAAGT+GGG | 0.595848 | 6.2:-14962723 | None:intergenic |
| ACATGGCTTCGTAACTACAT+TGG | 0.599600 | 6.2:+14962745 | MS.gene074201:CDS |
| TCGATATGTCGTATGATGAA+TGG | 0.602742 | 6.2:-14965815 | None:intergenic |
| AAGAATATGGCTCTACGTGA+GGG | 0.616607 | 6.2:-14964200 | None:intergenic |
| GTTGGTTGGATTGCCTACAT+CGG | 0.630807 | 6.2:+14964332 | MS.gene074201:CDS |
| AAGCAAAGTGTACCAATGCA+TGG | 0.633953 | 6.2:-14964246 | None:intergenic |
| ATCTCCAACAATGCACACGA+TGG | 0.635955 | 6.2:+14962612 | None:intergenic |
| GAACATCCAGTCCATCCATA+CGG | 0.641193 | 6.2:-14965857 | None:intergenic |
| ATGTCGTATGATGAATGGTA+TGG | 0.646301 | 6.2:-14965810 | None:intergenic |
| GATGAACTCACCAGCAAACG+GGG | 0.648868 | 6.2:-14964486 | None:intergenic |
| CGCGATCCCGAGCAAGACGT+AGG | 0.681471 | 6.2:+14965889 | MS.gene074201:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTTAATATTTTT+TGG | + | chr6.2:14963509-14963528 | MS.gene074201:intron | 0.0% |
| !!! | TAGATTTAAAGTTAAATAAA+TGG | + | chr6.2:14965149-14965168 | MS.gene074201:intron | 10.0% |
| !!! | TTTTTGTTTTAATTTCAAAT+AGG | + | chr6.2:14962889-14962908 | MS.gene074201:intron | 10.0% |
| !!! | TTTTTTTTAAATATTTACAC+AGG | + | chr6.2:14963448-14963467 | MS.gene074201:intron | 10.0% |
| !! | AAAATACTAAATACTTATAC+AGG | + | chr6.2:14963382-14963401 | MS.gene074201:intron | 15.0% |
| !! | AAATACTAAATACTTATACA+GGG | + | chr6.2:14963383-14963402 | MS.gene074201:intron | 15.0% |
| !! | TAACTTTAAATCTAACTTAA+GGG | - | chr6.2:14965143-14965162 | None:intergenic | 15.0% |
| !! | TTAACTTTAAATCTAACTTA+AGG | - | chr6.2:14965144-14965163 | None:intergenic | 15.0% |
| !!! | ATTTTTGATTTGATATGAAA+TGG | + | chr6.2:14963235-14963254 | MS.gene074201:intron | 15.0% |
| !!! | CATTTTTTTCAAATTATCAT+CGG | - | chr6.2:14963098-14963117 | None:intergenic | 15.0% |
| !!! | TAGGTTTTCTTTTTAATATT+TGG | + | chr6.2:14962908-14962927 | MS.gene074201:intron | 15.0% |
| !!! | TGATTTTTTTTTATTCATCT+TGG | + | chr6.2:14965373-14965392 | MS.gene074201:intron | 15.0% |
| !! | AACAATTAACATCTAACAAT+TGG | - | chr6.2:14963939-14963958 | None:intergenic | 20.0% |
| !! | AATAATGCATGAAGATAAAA+TGG | - | chr6.2:14963582-14963601 | None:intergenic | 20.0% |
| !! | ATAAAATGGTCATTTCAAAA+GGG | - | chr6.2:14963568-14963587 | None:intergenic | 20.0% |
| !! | ATTGTTAGATGTTAATTGTT+TGG | + | chr6.2:14963939-14963958 | MS.gene074201:intron | 20.0% |
| !! | CTAGCTCAAAAAAAAAAAAA+AGG | - | chr6.2:14962860-14962879 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGCTATGT+CGG | + | chr6.2:14963837-14963856 | MS.gene074201:intron | 20.0% |
| !! | TTTCCTAGATTAAATAATGT+TGG | + | chr6.2:14964314-14964333 | MS.gene074201:CDS | 20.0% |
| !!! | TGATTAAAGAAAAAAGTACA+CGG | + | chr6.2:14965025-14965044 | MS.gene074201:intron | 20.0% |
| !!! | TGTGAAAGTTTTAATCTTTT+GGG | + | chr6.2:14962948-14962967 | MS.gene074201:intron | 20.0% |
| !!! | TTGTTTTATCATTTTGCTTT+TGG | + | chr6.2:14963302-14963321 | MS.gene074201:intron | 20.0% |
| !!! | TTTTGGGTTTAATTTGAAAT+GGG | + | chr6.2:14962964-14962983 | MS.gene074201:intron | 20.0% |
| !!! | TTTTTTTGTTGATAAATCTC+AGG | + | chr6.2:14965610-14965629 | MS.gene074201:intron | 20.0% |
| ! | AAATGGTCTATCTTTCAATA+TGG | + | chr6.2:14965166-14965185 | MS.gene074201:intron | 25.0% |
| ! | AACCGATATTTGTAAGAATA+TGG | - | chr6.2:14964216-14964235 | None:intergenic | 25.0% |
| ! | AATATTCATGATTGCATTCA+CGG | + | chr6.2:14965757-14965776 | MS.gene074201:CDS | 25.0% |
| ! | AATGCAATCATGAATATTTG+CGG | - | chr6.2:14965755-14965774 | None:intergenic | 25.0% |
| ! | ACAAACAAATAACATACACA+AGG | - | chr6.2:14964078-14964097 | None:intergenic | 25.0% |
| ! | AGATTATTGTTGTGATTTAG+AGG | - | chr6.2:14964674-14964693 | None:intergenic | 25.0% |
| ! | AGCCATATTCTTACAAATAT+CGG | + | chr6.2:14964211-14964230 | MS.gene074201:CDS | 25.0% |
| ! | ATCTTGTAAAGTTCAAAGAT+GGG | - | chr6.2:14963623-14963642 | None:intergenic | 25.0% |
| ! | CAACCAACATTATTTAATCT+AGG | - | chr6.2:14964320-14964339 | None:intergenic | 25.0% |
| ! | CAACCATTGAAAATTATAAG+TGG | - | chr6.2:14963416-14963435 | None:intergenic | 25.0% |
| ! | CAAGAAAACAATGTTACAAA+AGG | - | chr6.2:14964148-14964167 | None:intergenic | 25.0% |
| ! | CTAGATTAAATAATGTTGGT+TGG | + | chr6.2:14964318-14964337 | MS.gene074201:CDS | 25.0% |
| ! | GATAAAATGGTCATTTCAAA+AGG | - | chr6.2:14963569-14963588 | None:intergenic | 25.0% |
| ! | GTTCATAACCATAAATTCAT+CGG | + | chr6.2:14964696-14964715 | MS.gene074201:intron | 25.0% |
| ! | TTAAAAAACCAAACCAGATA+TGG | - | chr6.2:14965548-14965567 | None:intergenic | 25.0% |
| ! | TTATTTGTTTGTCATTGTCT+CGG | + | chr6.2:14964086-14964105 | MS.gene074201:intron | 25.0% |
| !! | AAGCCACTTATAATTTTCAA+TGG | + | chr6.2:14963410-14963429 | MS.gene074201:intron | 25.0% |
| !!! | CTTTTGGGTTTAATTTGAAA+TGG | + | chr6.2:14962963-14962982 | MS.gene074201:intron | 25.0% |
| !!! | GTGTGAAAGTTTTAATCTTT+TGG | + | chr6.2:14962947-14962966 | MS.gene074201:intron | 25.0% |
| !!! | TGTTTTAATCACAAGATCAA+GGG | + | chr6.2:14965573-14965592 | MS.gene074201:intron | 25.0% |
| !!! | TTGTTTTAATCACAAGATCA+AGG | + | chr6.2:14965572-14965591 | MS.gene074201:intron | 25.0% |
| ACTCAATAACAGAATCATCA+AGG | - | chr6.2:14964610-14964629 | None:intergenic | 30.0% | |
| ATCATCAAGGATTATCCAAA+CGG | - | chr6.2:14964597-14964616 | None:intergenic | 30.0% | |
| ATCCAAAACACTTTACATTC+TGG | + | chr6.2:14964049-14964068 | MS.gene074201:intron | 30.0% | |
| ATTAGTACATAAGTTCAAGG+AGG | + | chr6.2:14965065-14965084 | MS.gene074201:intron | 30.0% | |
| ATTGCATTCACGGAAAATTA+TGG | + | chr6.2:14965767-14965786 | MS.gene074201:CDS | 30.0% | |
| CATCTTGTAAAGTTCAAAGA+TGG | - | chr6.2:14963624-14963643 | None:intergenic | 30.0% | |
| CATGGTTCAACTACTATAAA+TGG | - | chr6.2:14965505-14965524 | None:intergenic | 30.0% | |
| CTTCTACTTTACTTCATTTC+TGG | + | chr6.2:14962772-14962791 | MS.gene074201:CDS | 30.0% | |
| GCATGAAGATATTTGTAAAG+TGG | - | chr6.2:14964431-14964450 | None:intergenic | 30.0% | |
| GTAAGAAACAGAGAAATGAA+GGG | + | chr6.2:14964751-14964770 | MS.gene074201:intron | 30.0% | |
| GTATGAGAGATATTTAGTCT+TGG | + | chr6.2:14963157-14963176 | MS.gene074201:intron | 30.0% | |
| GTGAAATCAAACATGAACTA+AGG | - | chr6.2:14964015-14964034 | None:intergenic | 30.0% | |
| GTGATTAGTACATAAGTTCA+AGG | + | chr6.2:14965062-14965081 | MS.gene074201:intron | 30.0% | |
| TAATTGTTTGGTTACACGTT+GGG | + | chr6.2:14963951-14963970 | MS.gene074201:intron | 30.0% | |
| TATATATCAGCATGATCAGT+TGG | - | chr6.2:14963495-14963514 | None:intergenic | 30.0% | |
| TATATGGTTATTGTGGAGTT+TGG | + | chr6.2:14964368-14964387 | MS.gene074201:CDS | 30.0% | |
| TATGTTGTTGTGTCATACTA+AGG | + | chr6.2:14965314-14965333 | MS.gene074201:intron | 30.0% | |
| TCCATGATATATGATTCAGA+AGG | - | chr6.2:14964919-14964938 | None:intergenic | 30.0% | |
| TCCTTCTGAATCATATATCA+TGG | + | chr6.2:14964915-14964934 | MS.gene074201:intron | 30.0% | |
| TGAACATCTAACAATCTGAT+TGG | - | chr6.2:14963680-14963699 | None:intergenic | 30.0% | |
| TGTGGAGTTTGGTATTTATT+GGG | + | chr6.2:14964379-14964398 | MS.gene074201:CDS | 30.0% | |
| TTAATTGTTTGGTTACACGT+TGG | + | chr6.2:14963950-14963969 | MS.gene074201:intron | 30.0% | |
| TTAGTACATAAGTTCAAGGA+GGG | + | chr6.2:14965066-14965085 | MS.gene074201:intron | 30.0% | |
| TTGTGGAGTTTGGTATTTAT+TGG | + | chr6.2:14964378-14964397 | MS.gene074201:CDS | 30.0% | |
| TTTCCAACAGTAAATGTAGA+AGG | - | chr6.2:14962809-14962828 | None:intergenic | 30.0% | |
| ! | TTCTACAACAGCATTTTGTT+GGG | + | chr6.2:14962673-14962692 | MS.gene074201:CDS | 30.0% |
| ! | TTGTGAAAGATGTCATCTTT+TGG | + | chr6.2:14963334-14963353 | MS.gene074201:intron | 30.0% |
| ! | TTGTTGATAAATCTCAGGTT+TGG | + | chr6.2:14965615-14965634 | MS.gene074201:intron | 30.0% |
| ! | TTTCTACAACAGCATTTTGT+TGG | + | chr6.2:14962672-14962691 | MS.gene074201:CDS | 30.0% |
| !! | AAAAAAAAGGTGTCACCTTT+AGG | - | chr6.2:14962847-14962866 | None:intergenic | 30.0% |
| !! | AAAAAAAGGTGTCACCTTTA+GGG | - | chr6.2:14962846-14962865 | None:intergenic | 30.0% |
| !! | GACTTATGTTTTTCTAGCAA+TGG | + | chr6.2:14963649-14963668 | MS.gene074201:intron | 30.0% |
| !! | TACCAGAATGTAAAGTGTTT+TGG | - | chr6.2:14964054-14964073 | None:intergenic | 30.0% |
| !! | TCTTATTCATTGAAGGTGTT+TGG | + | chr6.2:14965728-14965747 | MS.gene074201:CDS | 30.0% |
| !!! | ACTTCATTTCTGGTTTCTTT+TGG | + | chr6.2:14962782-14962801 | MS.gene074201:CDS | 30.0% |
| !!! | TTTGTTACCTCACTTTTTGT+GGG | + | chr6.2:14962699-14962718 | MS.gene074201:CDS | 30.0% |
| AAAACGCAATGTACATCTCA+GGG | + | chr6.2:14963974-14963993 | MS.gene074201:intron | 35.0% | |
| AACATGAACTAAGGCGAATT+TGG | - | chr6.2:14964006-14964025 | None:intergenic | 35.0% | |
| AAGTGTGCAATAAAATGGAC+TGG | - | chr6.2:14965703-14965722 | None:intergenic | 35.0% | |
| ACACCAAAGTTAGTGATTCT+AGG | + | chr6.2:14964951-14964970 | MS.gene074201:intron | 35.0% | |
| ACGACATATCGACATAACTA+TGG | + | chr6.2:14965826-14965845 | MS.gene074201:CDS | 35.0% | |
| AGCAGACTGAGATAAATCAA+TGG | - | chr6.2:14965284-14965303 | None:intergenic | 35.0% | |
| AGCGATGTATATGGTTATTG+TGG | + | chr6.2:14964361-14964380 | MS.gene074201:CDS | 35.0% | |
| ATGAAACACAGATACAGACA+CGG | - | chr6.2:14963892-14963911 | None:intergenic | 35.0% | |
| ATGTCGTATGATGAATGGTA+TGG | - | chr6.2:14965813-14965832 | None:intergenic | 35.0% | |
| CGACATATCGACATAACTAT+GGG | + | chr6.2:14965827-14965846 | MS.gene074201:CDS | 35.0% | |
| CGGTTATTTAGCGATGTATA+TGG | + | chr6.2:14964352-14964371 | MS.gene074201:CDS | 35.0% | |
| CGTAAGAAACAGAGAAATGA+AGG | + | chr6.2:14964750-14964769 | MS.gene074201:intron | 35.0% | |
| GGAAAATTATGGCCTGTTAT+GGG | + | chr6.2:14965778-14965797 | MS.gene074201:CDS | 35.0% | |
| GGTTCACAACATTAGTGAAA+CGG | + | chr6.2:14964717-14964736 | MS.gene074201:intron | 35.0% | |
| GTTGTGAACCGATGAATTTA+TGG | - | chr6.2:14964707-14964726 | None:intergenic | 35.0% | |
| TATGTACTAATCACCTACGT+AGG | - | chr6.2:14965056-14965075 | None:intergenic | 35.0% | |
| TCATCAAGGATTATCCAAAC+GGG | - | chr6.2:14964596-14964615 | None:intergenic | 35.0% | |
| TCGATATGTCGTATGATGAA+TGG | - | chr6.2:14965818-14965837 | None:intergenic | 35.0% | |
| TGTCTTCAATGAAGAGAGTA+CGG | - | chr6.2:14962648-14962667 | None:intergenic | 35.0% | |
| TTTAATCACAAGATCAAGGG+CGG | + | chr6.2:14965576-14965595 | MS.gene074201:intron | 35.0% | |
| ! | AGTCCATTTTATTGCACACT+TGG | + | chr6.2:14965702-14965721 | MS.gene074201:CDS | 35.0% |
| ! | ATTTCTCTGTTTCTTACGTG+TGG | - | chr6.2:14964748-14964767 | None:intergenic | 35.0% |
| ! | TTGGTGCTCTTATTCATTGA+AGG | + | chr6.2:14965721-14965740 | MS.gene074201:CDS | 35.0% |
| !! | TGTATTGATTTGAGAGTCCT+AGG | + | chr6.2:14963715-14963734 | MS.gene074201:intron | 35.0% |
| !!! | AAAGTAGTTTTGAGCAGTGT+TGG | - | chr6.2:14964876-14964895 | None:intergenic | 35.0% |
| !!! | CTTTGTTACCTCACTTTTTG+TGG | + | chr6.2:14962698-14962717 | MS.gene074201:CDS | 35.0% |
| !!! | TGTTTTAAAAACCGAACTCG+CGG | + | chr6.2:14965404-14965423 | MS.gene074201:intron | 35.0% |
| AAACGCAATGTACATCTCAG+GGG | + | chr6.2:14963975-14963994 | MS.gene074201:intron | 40.0% | |
| AACCAAACCAGATATGGAAC+TGG | - | chr6.2:14965542-14965561 | None:intergenic | 40.0% | |
| AAGCAAAGTGTACCAATGCA+TGG | - | chr6.2:14964249-14964268 | None:intergenic | 40.0% | |
| ACACCAACAATTCTGATCGA+AGG | - | chr6.2:14963139-14963158 | None:intergenic | 40.0% | |
| ACAGAGAAATGAAGGGAAGA+AGG | + | chr6.2:14964758-14964777 | MS.gene074201:intron | 40.0% | |
| ACATGGCTTCGTAACTACAT+TGG | + | chr6.2:14962745-14962764 | MS.gene074201:CDS | 40.0% | |
| AGTCCAATCTCAAAGGTAGA+GGG | + | chr6.2:14965094-14965113 | MS.gene074201:intron | 40.0% | |
| ATAAACAAAGCCAGGCTATG+TGG | - | chr6.2:14965676-14965695 | None:intergenic | 40.0% | |
| CAAAGTTAGTGATTCTAGGC+AGG | + | chr6.2:14964955-14964974 | MS.gene074201:intron | 40.0% | |
| CACAACATTAGTGAAACGGA+AGG | + | chr6.2:14964721-14964740 | MS.gene074201:intron | 40.0% | |
| CATCAAGGATTATCCAAACG+GGG | - | chr6.2:14964595-14964614 | None:intergenic | 40.0% | |
| CATCCATTGCATATTCGATC+AGG | - | chr6.2:14964988-14965007 | None:intergenic | 40.0% | |
| CATCGCTAAATAACCGATGT+AGG | - | chr6.2:14964348-14964367 | None:intergenic | 40.0% | |
| CCGTAAATCTGCACTAACTA+CGG | + | chr6.2:14965442-14965461 | MS.gene074201:intron | 40.0% | |
| CCGTAGTTAGTGCAGATTTA+CGG | - | chr6.2:14965445-14965464 | None:intergenic | 40.0% | |
| CGCAATGTTTATCTCCCTAA+AGG | + | chr6.2:14962829-14962848 | MS.gene074201:CDS | 40.0% | |
| CGGAAAATTATGGCCTGTTA+TGG | + | chr6.2:14965777-14965796 | MS.gene074201:CDS | 40.0% | |
| CTGCCTAGAATCACTAACTT+TGG | - | chr6.2:14964957-14964976 | None:intergenic | 40.0% | |
| CTGGAACAATAAACAAAGCC+AGG | - | chr6.2:14965684-14965703 | None:intergenic | 40.0% | |
| CTGGCACAATATCAAGATCA+TGG | - | chr6.2:14965523-14965542 | None:intergenic | 40.0% | |
| GAAAACGCAATGTACATCTC+AGG | + | chr6.2:14963973-14963992 | MS.gene074201:intron | 40.0% | |
| GAAATCTGTTGTTGCAGATG+CGG | + | chr6.2:14964175-14964194 | MS.gene074201:intron | 40.0% | |
| GAACCTGATCGAATATGCAA+TGG | + | chr6.2:14964982-14965001 | MS.gene074201:intron | 40.0% | |
| GATCAGTTGGATATCATAGC+TGG | - | chr6.2:14963482-14963501 | None:intergenic | 40.0% | |
| GCACCAAGTGTGCAATAAAA+TGG | - | chr6.2:14965708-14965727 | None:intergenic | 40.0% | |
| GGTCCTTCTACATTTACTGT+TGG | + | chr6.2:14962803-14962822 | MS.gene074201:CDS | 40.0% | |
| GTAAGTACAAGTGTCAGTGT+CGG | - | chr6.2:14963800-14963819 | None:intergenic | 40.0% | |
| TATTGTGCCAGTTCCATATC+TGG | + | chr6.2:14965532-14965551 | MS.gene074201:intron | 40.0% | |
| TCCAAACGGGGATATTATCA+AGG | - | chr6.2:14964583-14964602 | None:intergenic | 40.0% | |
| TCCGAGTACTTGACAGAAAT+CGG | + | chr6.2:14964278-14964297 | MS.gene074201:CDS | 40.0% | |
| TGTAGTTACGAAGCCATGTT+TGG | - | chr6.2:14962744-14962763 | None:intergenic | 40.0% | |
| TTCCAAGGTTCTTCCAAACA+TGG | + | chr6.2:14962728-14962747 | MS.gene074201:CDS | 40.0% | |
| TTGATGAACTCACCAGCAAA+CGG | - | chr6.2:14964491-14964510 | None:intergenic | 40.0% | |
| TTTGGAAGAACCTTGGAAGT+GGG | - | chr6.2:14962726-14962745 | None:intergenic | 40.0% | |
| ! | AAGAATATGGCTCTACGTGA+GGG | - | chr6.2:14964203-14964222 | None:intergenic | 40.0% |
| ! | GCTTGAAGTATTCCATCAAG+AGG | - | chr6.2:14965649-14965668 | None:intergenic | 40.0% |
| ! | TAAGAATATGGCTCTACGTG+AGG | - | chr6.2:14964204-14964223 | None:intergenic | 40.0% |
| ! | TCCTTGATAATATCCCCGTT+TGG | + | chr6.2:14964579-14964598 | MS.gene074201:intron | 40.0% |
| !! | ATTCCCTCTACCTTTGAGAT+TGG | - | chr6.2:14965100-14965119 | None:intergenic | 40.0% |
| !! | TTGCTTTGAAAGCCATGCAT+TGG | + | chr6.2:14964234-14964253 | MS.gene074201:CDS | 40.0% |
| !! | TTGGCTTTTCATCCTCTTGA+TGG | + | chr6.2:14965634-14965653 | MS.gene074201:CDS | 40.0% |
| ACATATGTCTGACACGACAC+CGG | - | chr6.2:14963772-14963791 | None:intergenic | 45.0% | |
| ACCAGTTAAATCCGCGAGTT+CGG | - | chr6.2:14965418-14965437 | None:intergenic | 45.0% | |
| ACGCCTTCGATCAGAATTGT+TGG | + | chr6.2:14963133-14963152 | MS.gene074201:intron | 45.0% | |
| ACTATGGGCATTACACCGTA+TGG | + | chr6.2:14965842-14965861 | MS.gene074201:CDS | 45.0% | |
| AGCCATGTTTGGAAGAACCT+TGG | - | chr6.2:14962733-14962752 | None:intergenic | 45.0% | |
| AGTACTTGACAGAAATCGGC+TGG | + | chr6.2:14964282-14964301 | MS.gene074201:CDS | 45.0% | |
| ATCTGCACTAACTACGGTTC+AGG | + | chr6.2:14965448-14965467 | MS.gene074201:intron | 45.0% | |
| ATTACACCGTATGGATGGAC+TGG | + | chr6.2:14965851-14965870 | MS.gene074201:CDS | 45.0% | |
| CAGTCCAATCTCAAAGGTAG+AGG | + | chr6.2:14965093-14965112 | MS.gene074201:intron | 45.0% | |
| CTCAAACCAAGACGAAACTG+TGG | - | chr6.2:14965482-14965501 | None:intergenic | 45.0% | |
| GAACATCCAGTCCATCCATA+CGG | - | chr6.2:14965860-14965879 | None:intergenic | 45.0% | |
| GAGAAATGAAGGGAAGAAGG+AGG | + | chr6.2:14964761-14964780 | MS.gene074201:intron | 45.0% | |
| GGAAGACAGTCCAATCTCAA+AGG | + | chr6.2:14965087-14965106 | MS.gene074201:intron | 45.0% | |
| GTCAAGTACTCGGAAAGAGT+TGG | - | chr6.2:14964272-14964291 | None:intergenic | 45.0% | |
| GTTGGTTGGATTGCCTACAT+CGG | + | chr6.2:14964332-14964351 | MS.gene074201:CDS | 45.0% | |
| GTTTGGAAGAACCTTGGAAG+TGG | - | chr6.2:14962727-14962746 | None:intergenic | 45.0% | |
| TAACTACGGTTCAGGCAGTT+CGG | + | chr6.2:14965456-14965475 | MS.gene074201:intron | 45.0% | |
| TCAAGCATTACCACATAGCC+TGG | + | chr6.2:14965663-14965682 | MS.gene074201:CDS | 45.0% | |
| TGATGAACTCACCAGCAAAC+GGG | - | chr6.2:14964490-14964509 | None:intergenic | 45.0% | |
| TGCCAGTTCCATATCTGGTT+TGG | + | chr6.2:14965537-14965556 | MS.gene074201:intron | 45.0% | |
| TGGCTTCGTAACTACATTGG+TGG | + | chr6.2:14962748-14962767 | MS.gene074201:CDS | 45.0% | |
| TTTGAGAGTCCTAGGAAGCA+CGG | + | chr6.2:14963723-14963742 | MS.gene074201:intron | 45.0% | |
| ! | GCCGATTTCTGTCAAGTACT+CGG | - | chr6.2:14964282-14964301 | None:intergenic | 45.0% |
| !! | GTATGGATGGACTGGATGTT+CGG | + | chr6.2:14965859-14965878 | MS.gene074201:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTAAG+TGG | + | chr6.2:14963187-14963206 | MS.gene074201:intron | 5.0% |
| AATACTCTCTCCCCGTTTGC+TGG | + | chr6.2:14964476-14964495 | MS.gene074201:CDS | 50.0% | |
| ACCGAACTCGCGGATTTAAC+TGG | + | chr6.2:14965414-14965433 | MS.gene074201:intron | 50.0% | |
| ACTTTGCCTACGTCTTGCTC+GGG | - | chr6.2:14965898-14965917 | None:intergenic | 50.0% | |
| AGCACATGACACTGACACGT+TGG | + | chr6.2:14963070-14963089 | MS.gene074201:intron | 50.0% | |
| AGTGGGACCCACAAAAAGTG+AGG | - | chr6.2:14962709-14962728 | None:intergenic | 50.0% | |
| CACTTTGCCTACGTCTTGCT+CGG | - | chr6.2:14965899-14965918 | None:intergenic | 50.0% | |
| CATATGTCTGACACGACACC+GGG | - | chr6.2:14963771-14963790 | None:intergenic | 50.0% | |
| GATGAACTCACCAGCAAACG+GGG | - | chr6.2:14964489-14964508 | None:intergenic | 50.0% | |
| GTACACGGAAACTCCTACGT+AGG | + | chr6.2:14965040-14965059 | MS.gene074201:intron | 50.0% | |
| TGGGCATTACACCGTATGGA+TGG | + | chr6.2:14965846-14965865 | MS.gene074201:CDS | 50.0% | |
| TGGTAACCAGCTCCCATAAC+AGG | - | chr6.2:14965793-14965812 | None:intergenic | 50.0% | |
| TTATGGCCTGTTATGGGAGC+TGG | + | chr6.2:14965784-14965803 | MS.gene074201:CDS | 50.0% | |
| ! | ATTCTGATCGAAGGCGTGTC+TGG | - | chr6.2:14963130-14963149 | None:intergenic | 50.0% |
| ! | TAGGAAGCACGGACATTCCT+CGG | + | chr6.2:14963734-14963753 | MS.gene074201:intron | 50.0% |
| ! | TTTTGTGGGTCCCACTTCCA+AGG | + | chr6.2:14962713-14962732 | MS.gene074201:CDS | 50.0% |
| CAGTCACTGGTAGACGAACG+AGG | + | chr6.2:14964795-14964814 | MS.gene074201:intron | 55.0% | |
| GACGTTGCAAAGACAGTCGC+CGG | + | chr6.2:14964819-14964838 | MS.gene074201:intron | 55.0% | |
| GAGGAATGTCCGTGCTTCCT+AGG | - | chr6.2:14963735-14963754 | None:intergenic | 55.0% | |
| GCACGGACATTCCTCGGATT+AGG | + | chr6.2:14963740-14963759 | MS.gene074201:intron | 55.0% | |
| GTTCGGCCACAGTTTCGTCT+TGG | + | chr6.2:14965473-14965492 | MS.gene074201:intron | 55.0% | |
| ! | TCCTCGGATTAGGCATGTCC+CGG | + | chr6.2:14963750-14963769 | MS.gene074201:intron | 55.0% |
| ACCGGGACATGCCTAATCCG+AGG | - | chr6.2:14963754-14963773 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+CGG | - | chr6.2:14963874-14963893 | None:intergenic | 60.0% | |
| GGACGCTGTGTTGCAGTCAC+TGG | + | chr6.2:14964782-14964801 | MS.gene074201:intron | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+TGG | + | chr6.2:14963863-14963882 | MS.gene074201:intron | 60.0% | |
| TCTCTCACACCCTCCTCTGC+CGG | - | chr6.2:14964841-14964860 | None:intergenic | 60.0% | |
| AAGACAGTCGCCGGCAGAGG+AGG | + | chr6.2:14964828-14964847 | MS.gene074201:intron | 65.0% | |
| AGACAGTCGCCGGCAGAGGA+GGG | + | chr6.2:14964829-14964848 | MS.gene074201:intron | 65.0% | |
| CGCGATCCCGAGCAAGACGT+AGG | + | chr6.2:14965889-14965908 | MS.gene074201:CDS | 65.0% | |
| GCAAAGACAGTCGCCGGCAG+AGG | + | chr6.2:14964825-14964844 | MS.gene074201:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 14962622 | 14965927 | 14962622 | ID=MS.gene074201 |
| chr6.2 | mRNA | 14962622 | 14965927 | 14962622 | ID=MS.gene074201.t1;Parent=MS.gene074201 |
| chr6.2 | exon | 14962622 | 14962850 | 14962622 | ID=MS.gene074201.t1.exon1;Parent=MS.gene074201.t1 |
| chr6.2 | CDS | 14962622 | 14962850 | 14962622 | ID=cds.MS.gene074201.t1;Parent=MS.gene074201.t1 |
| chr6.2 | exon | 14964192 | 14964497 | 14964192 | ID=MS.gene074201.t1.exon2;Parent=MS.gene074201.t1 |
| chr6.2 | CDS | 14964192 | 14964497 | 14964192 | ID=cds.MS.gene074201.t1;Parent=MS.gene074201.t1 |
| chr6.2 | exon | 14965632 | 14965927 | 14965632 | ID=MS.gene074201.t1.exon3;Parent=MS.gene074201.t1 |
| chr6.2 | CDS | 14965632 | 14965927 | 14965632 | ID=cds.MS.gene074201.t1;Parent=MS.gene074201.t1 |
| Gene Sequence |
| Protein sequence |
