AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08578


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08578.t1 MTR_4g061050 96.927 358 11 0 1 358 701 1058 0.0 716
MS.gene08578.t1 MTR_4g036760 82.961 358 61 0 1 358 702 1059 0.0 618
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08578.t1 AT5G61460 55.932 354 156 0 5 358 704 1057 1.12e-128 394
MS.gene08578.t1 AT5G07660 55.367 354 158 0 5 358 705 1058 1.83e-125 386

Find 79 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCATCCATTGCTCTAAA+TGG 0.155010 4.1:-38226085 None:intergenic
GGATGAATTTGATGTCTTTA+TGG 0.190524 4.1:+38226099 MS.gene08578:CDS
ATCTCAAGCATCAGCTTTCT+TGG 0.206916 4.1:+38225017 MS.gene08578:CDS
CGAGACACAAGGGGACTTTC+AGG 0.235502 4.1:+38225416 MS.gene08578:CDS
ATCCTCATGATCAGATTTAA+TGG 0.238416 4.1:+38225123 MS.gene08578:intron
ACTGCAGGATAATGTTAAAA+AGG 0.286872 4.1:+38223568 MS.gene08578:intron
AAAGGTCCTGCATGATATTA+AGG 0.300329 4.1:+38222110 MS.gene08578:CDS
GTCATCCTGACAGCAAATTA+TGG 0.302156 4.1:-38223594 None:intergenic
TTCGAAACTCTAAAGCATTA+TGG 0.308827 4.1:-38224967 None:intergenic
CCGAATCAATTGATGATCTA+AGG 0.311139 4.1:+38223855 MS.gene08578:CDS
ATTTCAGCACTGATTTGCTC+TGG 0.324777 4.1:-38223650 None:intergenic
CAGCTCTGTTTGATGTATCT+TGG 0.325637 4.1:-38225391 None:intergenic
AGCTCTGTTTGATGTATCTT+GGG 0.341882 4.1:-38225390 None:intergenic
CAATATACCTAGTATCATTC+GGG 0.359556 4.1:-38226409 None:intergenic
AAGAACGAAAGATTATAAAA+AGG 0.361910 4.1:+38223894 MS.gene08578:CDS
GCTTGGTGAAGGGAGGGAAC+AGG 0.377631 4.1:+38226844 MS.gene08578:intron
ATTCATCCATTGCTCTAAAT+GGG 0.390531 4.1:-38226084 None:intergenic
CCAATATACCTAGTATCATT+CGG 0.408883 4.1:-38226410 None:intergenic
TTTCAGCACTGATTTGCTCT+GGG 0.418720 4.1:-38223649 None:intergenic
GGCTTCCATAATTTGCTGTC+AGG 0.431592 4.1:+38223589 MS.gene08578:CDS
CACTTAGGCGTGAGAGCAAA+AGG 0.434691 4.1:+38223690 MS.gene08578:CDS
CCTTAGATCATCAATTGATT+CGG 0.435592 4.1:-38223855 None:intergenic
TACATTCAATTTCTGTCGAA+GGG 0.470596 4.1:-38223933 None:intergenic
GCTTCGCTAGGAGGTTGTGA+TGG 0.471159 4.1:+38223620 MS.gene08578:CDS
TGATCACCCCGAATGATACT+AGG 0.480437 4.1:+38226402 MS.gene08578:CDS
CTTCATGCCTCCTCTGCTCA+AGG 0.480838 4.1:-38221743 None:intergenic
GGAGGCAGAGGAACACTATC+GGG 0.483532 4.1:+38222131 MS.gene08578:CDS
CAAATTTACCTCAATCGATA+AGG 0.486609 4.1:-38225202 None:intergenic
ACTTATCAAAGTTGATTATG+AGG 0.494408 4.1:+38225173 MS.gene08578:CDS
TCGGGGTGATCAATATCCAC+TGG 0.514310 4.1:-38226391 None:intergenic
GTTCAGTCTCAGATTTCTCA+AGG 0.519390 4.1:-38221945 None:intergenic
ATACATTCAATTTCTGTCGA+AGG 0.519826 4.1:-38223934 None:intergenic
CAGGATGACCTTGCTTCGCT+AGG 0.520004 4.1:+38223608 MS.gene08578:CDS
CTTCGCTAGGAGGTTGTGAT+GGG 0.524927 4.1:+38223621 MS.gene08578:CDS
GAATGTGTGCAGCTTGGTGA+AGG 0.530466 4.1:+38226833 MS.gene08578:intron
TAGCTCGGCACCTTTGTCCT+CGG 0.531347 4.1:+38220930 MS.gene08578:CDS
AATCACAATTGGTCAAGCAC+GGG 0.546782 4.1:-38226892 None:intergenic
TTCAGCACTGATTTGCTCTG+GGG 0.551309 4.1:-38223648 None:intergenic
ATAATGCTTTAGAGTTTCGA+AGG 0.554123 4.1:+38224969 MS.gene08578:CDS
CTGCCTCCTTAATATCATGC+AGG 0.564666 4.1:-38222116 None:intergenic
AGGAGGCAGAGGAACACTAT+CGG 0.566175 4.1:+38222130 MS.gene08578:CDS
CTTGGTGAAGGGAGGGAACA+GGG 0.567012 4.1:+38226845 MS.gene08578:CDS
TGAAAATTTCATGAAAACAA+AGG 0.569118 4.1:+38222092 MS.gene08578:CDS
GGAGGCCCCATTTAGAGCAA+TGG 0.569434 4.1:+38226078 MS.gene08578:CDS
GCATGATATTAAGGAGGCAG+AGG 0.571752 4.1:+38222119 MS.gene08578:CDS
AAAGTCTAAATCATACACTT+AGG 0.572201 4.1:+38223675 MS.gene08578:CDS
AAATCACAATTGGTCAAGCA+CGG 0.573228 4.1:-38226893 None:intergenic
CAGGGTTAAGAAGATGCAAA+TGG 0.576301 4.1:+38226863 MS.gene08578:CDS
GGGCCTCCGTCATTTCATGA+AGG 0.578750 4.1:-38226063 None:intergenic
CAGAGGAGGCATGAAGCAGA+GGG 0.582349 4.1:+38221750 MS.gene08578:CDS
GATGACCTTGCTTCGCTAGG+AGG 0.590407 4.1:+38223611 MS.gene08578:CDS
CGGGGTGATCAATATCCACT+GGG 0.591640 4.1:-38226390 None:intergenic
ACAGAGCTGTTCGAGACACA+AGG 0.591749 4.1:+38225405 MS.gene08578:CDS
GCAGAGGAGGCATGAAGCAG+AGG 0.592152 4.1:+38221749 MS.gene08578:CDS
GGAAACGACCTTATCGATTG+AGG 0.596487 4.1:+38225194 MS.gene08578:CDS
CACAACCTCCTAGCGAAGCA+AGG 0.608263 4.1:-38223616 None:intergenic
GGCCTCCGTCATTTCATGAA+GGG 0.610350 4.1:-38226062 None:intergenic
ATTAGCCCTTCATGAAATGA+CGG 0.611197 4.1:+38226057 MS.gene08578:CDS
TTCAGTCTCAGATTTCTCAA+GGG 0.612220 4.1:-38221944 None:intergenic
GCTCTGTTTGATGTATCTTG+GGG 0.619473 4.1:-38225389 None:intergenic
TGTTAGAACGCCTTGAGCAG+AGG 0.622007 4.1:+38221733 MS.gene08578:CDS
TAGAACGCCTTGAGCAGAGG+AGG 0.631658 4.1:+38221736 MS.gene08578:CDS
TTCATCCATTGCTCTAAATG+GGG 0.635651 4.1:-38226083 None:intergenic
AATGTGTGCAGCTTGGTGAA+GGG 0.638597 4.1:+38226834 MS.gene08578:intron
ATCACAATTGGTCAAGCACG+GGG 0.646023 4.1:-38226891 None:intergenic
GTGTGCAGCTTGGTGAAGGG+AGG 0.647999 4.1:+38226837 MS.gene08578:intron
AAGACAAATAGATGCAGTGA+CGG 0.648122 4.1:+38221981 MS.gene08578:CDS
ATCTCATCAACCGAGGACAA+AGG 0.656840 4.1:-38220940 None:intergenic
TTCAACAATCTCATCAACCG+AGG 0.657847 4.1:-38220947 None:intergenic
ACAAGCGACTGAAAGTAGCT+CGG 0.665798 4.1:+38220915 MS.gene08578:CDS
ACAAATAGATGCAGTGACGG+AGG 0.666229 4.1:+38221984 MS.gene08578:CDS
GTAAAATTTGACAAACTGTG+TGG 0.668627 4.1:+38221792 MS.gene08578:CDS
CAGAGCTGTTCGAGACACAA+GGG 0.669316 4.1:+38225406 MS.gene08578:CDS
TGTGCAGCTTGGTGAAGGGA+GGG 0.670551 4.1:+38226838 MS.gene08578:intron
AGAGCTGTTCGAGACACAAG+GGG 0.683582 4.1:+38225407 MS.gene08578:CDS
GGTCCTGCATGATATTAAGG+AGG 0.685132 4.1:+38222113 MS.gene08578:CDS
CTGAGGCACAAGGATCCCAG+TGG 0.705015 4.1:+38226375 MS.gene08578:CDS
AGCCCTTCATGAAATGACGG+AGG 0.719050 4.1:+38226060 MS.gene08578:CDS
AATATACCTAGTATCATTCG+GGG 0.733090 4.1:-38226408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATTAATTCTTGT+TGG + chr4.1:38224195-38224214 MS.gene08578:intron 10.0%
!! AATAATTAATAATTCCAAAT+GGG - chr4.1:38224302-38224321 None:intergenic 10.0%
!! CACATAAAAAAATAAAAAAT+AGG - chr4.1:38224592-38224611 None:intergenic 10.0%
!! TAACTTTATTAAAAAATTAC+AGG + chr4.1:38222056-38222075 MS.gene08578:intron 10.0%
!! TAATAATTAATAATTCCAAA+TGG - chr4.1:38224303-38224322 None:intergenic 10.0%
!! TTTATTGTATGTATAAATAA+TGG - chr4.1:38225472-38225491 None:intergenic 10.0%
!!! TAAATTGAGTTTAAAATAAT+AGG + chr4.1:38221264-38221283 MS.gene08578:intron 10.0%
!! AAATAAAATTGATGTGTTAT+GGG + chr4.1:38223483-38223502 MS.gene08578:intron 15.0%
!! GTTATATGATAAATAAACAA+AGG - chr4.1:38221235-38221254 None:intergenic 15.0%
!! TAAACTCAATTTAACAAAAT+TGG - chr4.1:38221257-38221276 None:intergenic 15.0%
!! TAAATAAAATTGATGTGTTA+TGG + chr4.1:38223482-38223501 MS.gene08578:intron 15.0%
!! TATTTATGACATATTTGATT+TGG - chr4.1:38222451-38222470 None:intergenic 15.0%
!! TCTTTAAACTATTCAAATAA+TGG + chr4.1:38222792-38222811 MS.gene08578:intron 15.0%
!! TGTAAAATGACATATAATTT+GGG + chr4.1:38223111-38223130 MS.gene08578:intron 15.0%
!! TTGTAAAATGACATATAATT+TGG + chr4.1:38223110-38223129 MS.gene08578:intron 15.0%
!! TTTATATTAGTCATCTAAAT+TGG + chr4.1:38222185-38222204 MS.gene08578:intron 15.0%
!!! ACACATCAATTTTATTTAAA+AGG - chr4.1:38223480-38223499 None:intergenic 15.0%
!!! ATAATATATGGATTAAACTT+TGG - chr4.1:38221663-38221682 None:intergenic 15.0%
!!! TAATATATGGATTAAACTTT+GGG - chr4.1:38221662-38221681 None:intergenic 15.0%
!!! TGAGTTTTAATTTATTTTTC+TGG + chr4.1:38225798-38225817 MS.gene08578:intron 15.0%
!!! TTAAAATAAGTAAACGTTTT+AGG - chr4.1:38225340-38225359 None:intergenic 15.0%
!!! TTATCATTAATCTCTTTTTA+TGG + chr4.1:38223978-38223997 MS.gene08578:intron 15.0%
!!! TTTTATTTAAAAGGAAAATC+TGG - chr4.1:38223471-38223490 None:intergenic 15.0%
!! AAAATATTGAAAGAACAACA+TGG - chr4.1:38224441-38224460 None:intergenic 20.0%
!! AAGAACGAAAGATTATAAAA+AGG + chr4.1:38223894-38223913 MS.gene08578:CDS 20.0%
!! AATTGAATGTATGTATTCTT+TGG + chr4.1:38223945-38223964 MS.gene08578:intron 20.0%
!! ACAAAAATATCCTTCATTAA+TGG + chr4.1:38222992-38223011 MS.gene08578:intron 20.0%
!! ACCAATTAATTACCATAAAA+AGG - chr4.1:38225283-38225302 None:intergenic 20.0%
!! ACTCTTATGTTTGATTAATT+TGG + chr4.1:38223397-38223416 MS.gene08578:intron 20.0%
!! AGATCAAGTAATAAATAGTA+AGG + chr4.1:38223049-38223068 MS.gene08578:intron 20.0%
!! AGGTAAATGAAAAGTAAAAA+AGG - chr4.1:38225263-38225282 None:intergenic 20.0%
!! AGGTTTAGAGAAAAAAAAAA+AGG - chr4.1:38225089-38225108 None:intergenic 20.0%
!! ATAGTTTATTTAGATTACAC+TGG - chr4.1:38226169-38226188 None:intergenic 20.0%
!! ATCAAGTAATAAATAGTAAG+GGG + chr4.1:38223051-38223070 MS.gene08578:intron 20.0%
!! ATTAATTCTTGTTGGATATT+TGG + chr4.1:38224203-38224222 MS.gene08578:intron 20.0%
!! CAAACAATAATTGTATCATA+TGG + chr4.1:38225538-38225557 MS.gene08578:intron 20.0%
!! CATTCAATTCGAATAATATA+TGG - chr4.1:38221675-38221694 None:intergenic 20.0%
!! GATCAAGTAATAAATAGTAA+GGG + chr4.1:38223050-38223069 MS.gene08578:intron 20.0%
!! GTGTACATTAACATTATTAT+GGG - chr4.1:38222507-38222526 None:intergenic 20.0%
!! TATAACAAGTAATATGTTGT+TGG - chr4.1:38221005-38221024 None:intergenic 20.0%
!! TGAAAATTTCATGAAAACAA+AGG + chr4.1:38222092-38222111 MS.gene08578:CDS 20.0%
!! TGCACATAAAAAAAAAAACT+GGG + chr4.1:38223302-38223321 MS.gene08578:intron 20.0%
!! TGTGTACATTAACATTATTA+TGG - chr4.1:38222508-38222527 None:intergenic 20.0%
!! TTGCACATAAAAAAAAAAAC+TGG + chr4.1:38223301-38223320 MS.gene08578:intron 20.0%
!!! AATTTGCTTCTTTTGTTTAT+AGG + chr4.1:38225358-38225377 MS.gene08578:intron 20.0%
!!! ACCTTTTTATGGTAATTAAT+TGG + chr4.1:38225279-38225298 MS.gene08578:intron 20.0%
!!! ACTTTTCATTTACCTTTTTA+TGG + chr4.1:38225268-38225287 MS.gene08578:intron 20.0%
!!! ATCATGCTTTTCATTATTTT+TGG + chr4.1:38223814-38223833 MS.gene08578:intron 20.0%
!!! ATTTTATTATTGAAGTGACA+TGG + chr4.1:38226731-38226750 MS.gene08578:intron 20.0%
!!! GGTTAATTTATAAAGTACTA+CGG + chr4.1:38221376-38221395 MS.gene08578:intron 20.0%
!!! GTGATTTTATTGTTTATTGA+AGG + chr4.1:38224940-38224959 MS.gene08578:intron 20.0%
!!! GTTAATTTATAAAGTACTAC+GGG + chr4.1:38221377-38221396 MS.gene08578:intron 20.0%
!!! TTTTATGTGTTATTGTAGTA+AGG + chr4.1:38224603-38224622 MS.gene08578:intron 20.0%
!!! TTTTTTTTTTTCTCTAAACC+TGG + chr4.1:38225088-38225107 MS.gene08578:intron 20.0%
! AAAGTCTAAATCATACACTT+AGG + chr4.1:38223675-38223694 MS.gene08578:CDS 25.0%
! AACCTACTTAAGTATAATAC+AGG - chr4.1:38226506-38226525 None:intergenic 25.0%
! AAGGAAATAAGAAAAAGTAG+AGG + chr4.1:38221171-38221190 MS.gene08578:intron 25.0%
! AATATCCTTCATTAATGGTA+TGG + chr4.1:38222997-38223016 MS.gene08578:intron 25.0%
! AATTTGATGTCTTTATGGTA+TGG + chr4.1:38226104-38226123 MS.gene08578:intron 25.0%
! AGAATCACTAACTAAGTTTA+TGG - chr4.1:38222775-38222794 None:intergenic 25.0%
! AGAGCACATAGAATTAATTT+AGG + chr4.1:38225653-38225672 MS.gene08578:intron 25.0%
! AGGTGGTTAATAAGTTTAAT+TGG + chr4.1:38222656-38222675 MS.gene08578:intron 25.0%
! ATACAACATTAATGTAGAAG+TGG - chr4.1:38222947-38222966 None:intergenic 25.0%
! ATGGACATTATTATTTGTTC+TGG + chr4.1:38226441-38226460 MS.gene08578:intron 25.0%
! CATGGAAAACATAAAAGAAT+TGG + chr4.1:38223022-38223041 MS.gene08578:intron 25.0%
! GCTAGAATGACATATAATTT+GGG + chr4.1:38223147-38223166 MS.gene08578:intron 25.0%
! GTAAAAAAGGAAACTGAAAA+TGG - chr4.1:38225250-38225269 None:intergenic 25.0%
! GTGACTTATTACATTACAAT+TGG + chr4.1:38223233-38223252 MS.gene08578:intron 25.0%
! TAATTGACTACTATGTAACT+GGG + chr4.1:38226294-38226313 MS.gene08578:intron 25.0%
! TACTATATCTTTAATGCCTA+AGG - chr4.1:38223515-38223534 None:intergenic 25.0%
! TAGCAACAAAAATATGTGAA+AGG - chr4.1:38225053-38225072 None:intergenic 25.0%
! TAGGATCATAATCATAGATT+GGG + chr4.1:38224813-38224832 MS.gene08578:intron 25.0%
! TATTAAAAAATTACAGGCGA+AGG + chr4.1:38222062-38222081 MS.gene08578:intron 25.0%
! TATTATTCGAATTGAATGCT+AGG + chr4.1:38221677-38221696 MS.gene08578:intron 25.0%
! TGCTAGAATGACATATAATT+TGG + chr4.1:38223146-38223165 MS.gene08578:intron 25.0%
! TGTTATTGTAGTAAGGTAAT+TGG + chr4.1:38224610-38224629 MS.gene08578:intron 25.0%
! TGTTGCACATAAAAAAAACT+GGG + chr4.1:38223337-38223356 MS.gene08578:intron 25.0%
! TTAATTGACTACTATGTAAC+TGG + chr4.1:38226293-38226312 MS.gene08578:intron 25.0%
! TTACACTGGTAAAATACTAA+TGG - chr4.1:38226155-38226174 None:intergenic 25.0%
! TTAGGATCATAATCATAGAT+TGG + chr4.1:38224812-38224831 MS.gene08578:intron 25.0%
! TTATTCTTGCCTTATACTTT+CGG + chr4.1:38221534-38221553 MS.gene08578:intron 25.0%
! TTGTGATATAACGTGAATAA+TGG + chr4.1:38222736-38222755 MS.gene08578:intron 25.0%
! TTGTTGCACATAAAAAAAAC+TGG + chr4.1:38223336-38223355 MS.gene08578:intron 25.0%
!! AACTAATTCTAAAGATTACG+AGG + chr4.1:38225613-38225632 MS.gene08578:intron 25.0%
!! AATAGGAATGTAGACTTTTA+TGG + chr4.1:38224676-38224695 MS.gene08578:intron 25.0%
!! ACTTATCAAAGTTGATTATG+AGG + chr4.1:38225173-38225192 MS.gene08578:CDS 25.0%
!! CAATTCTTTTATGTTTTCCA+TGG - chr4.1:38223024-38223043 None:intergenic 25.0%
!! CTCTTTTTATGGATATTGTT+CGG + chr4.1:38223989-38224008 MS.gene08578:intron 25.0%
!! TACAAATTCAACACATTTTG+AGG + chr4.1:38224918-38224937 MS.gene08578:intron 25.0%
!!! ACTTGTGATATTTTTAAGTG+GGG - chr4.1:38222396-38222415 None:intergenic 25.0%
!!! AGGTATATTGGTTTCAAATA+TGG + chr4.1:38226422-38226441 MS.gene08578:intron 25.0%
!!! ATATCAGACATTACTTTTCT+TGG - chr4.1:38226556-38226575 None:intergenic 25.0%
!!! CTTAGTAAGTTTTATCTTGA+GGG + chr4.1:38224760-38224779 MS.gene08578:intron 25.0%
!!! GACTTGTGATATTTTTAAGT+GGG - chr4.1:38222397-38222416 None:intergenic 25.0%
!!! TAGGCAACAATTATGTTTTT+TGG + chr4.1:38223200-38223219 MS.gene08578:intron 25.0%
!!! TGACTTGTGATATTTTTAAG+TGG - chr4.1:38222398-38222417 None:intergenic 25.0%
!!! TTAAAGTTTTTTCACTCAGT+TGG + chr4.1:38224166-38224185 MS.gene08578:intron 25.0%
!!! TTACTAGCACATTTTGTTTT+TGG + chr4.1:38222620-38222639 MS.gene08578:intron 25.0%
!!! TTAGTAAGTTTTATCTTGAG+GGG + chr4.1:38224761-38224780 MS.gene08578:intron 25.0%
!!! TTATTCGCTTTTATGTAAGT+TGG - chr4.1:38222567-38222586 None:intergenic 25.0%
!!! TTTTTTTATGTGCAACAATG+AGG - chr4.1:38223296-38223315 None:intergenic 25.0%
AAAAGTCGAAGTTATAAAGC+AGG + chr4.1:38221426-38221445 MS.gene08578:intron 30.0%
AAGGAGGCAATATACTTTAA+GGG + chr4.1:38222838-38222857 MS.gene08578:intron 30.0%
AATAATAGGATCGTTCAGTA+TGG + chr4.1:38221278-38221297 MS.gene08578:intron 30.0%
AATATACCTAGTATCATTCG+GGG - chr4.1:38226411-38226430 None:intergenic 30.0%
ACTGCAGGATAATGTTAAAA+AGG + chr4.1:38223568-38223587 MS.gene08578:intron 30.0%
AGTAAGCAGAAAAATTAGCA+TGG + chr4.1:38226334-38226353 MS.gene08578:CDS 30.0%
ATAAATCAAATTGCACCTCA+CGG - chr4.1:38222170-38222189 None:intergenic 30.0%
ATAATAGGATCGTTCAGTAT+GGG + chr4.1:38221279-38221298 MS.gene08578:intron 30.0%
ATAATTGTTGCCTAAGATTC+GGG - chr4.1:38223194-38223213 None:intergenic 30.0%
ATACATATTGAACAGCAAAG+TGG + chr4.1:38226776-38226795 MS.gene08578:intron 30.0%
ATACATTCAATTTCTGTCGA+AGG - chr4.1:38223937-38223956 None:intergenic 30.0%
ATCCTCATGATCAGATTTAA+TGG + chr4.1:38225123-38225142 MS.gene08578:intron 30.0%
CAATATACCTAGTATCATTC+GGG - chr4.1:38226412-38226431 None:intergenic 30.0%
CATAATTGTTGCCTAAGATT+CGG - chr4.1:38223195-38223214 None:intergenic 30.0%
CCAAACAAAACTACTTGATT+TGG + chr4.1:38226612-38226631 MS.gene08578:intron 30.0%
CCAATATACCTAGTATCATT+CGG - chr4.1:38226413-38226432 None:intergenic 30.0%
CCTCAAGATAAAACTTACTA+AGG - chr4.1:38224762-38224781 None:intergenic 30.0%
CCTTAGATCATCAATTGATT+CGG - chr4.1:38223858-38223877 None:intergenic 30.0%
GGATGAATTTGATGTCTTTA+TGG + chr4.1:38226099-38226118 MS.gene08578:CDS 30.0%
GTAAAATTTGACAAACTGTG+TGG + chr4.1:38221792-38221811 MS.gene08578:CDS 30.0%
GTTATATCACAATGCAAAGA+GGG - chr4.1:38222728-38222747 None:intergenic 30.0%
TAATTCCTTAGCCAGAATTA+GGG + chr4.1:38222885-38222904 MS.gene08578:intron 30.0%
TACATTCAATTTCTGTCGAA+GGG - chr4.1:38223936-38223955 None:intergenic 30.0%
TATGGAATTCAACTCTTAGT+AGG + chr4.1:38221118-38221137 MS.gene08578:intron 30.0%
TATTCTGCTTGTTTGTTTGA+GGG + chr4.1:38221077-38221096 MS.gene08578:intron 30.0%
TGCCTGTATTATACTTAAGT+AGG + chr4.1:38226501-38226520 MS.gene08578:intron 30.0%
TGTTGTGTGTGCATTTAATT+AGG + chr4.1:38226001-38226020 MS.gene08578:intron 30.0%
TTAATTCCTTAGCCAGAATT+AGG + chr4.1:38222884-38222903 MS.gene08578:intron 30.0%
TTTGCCTACAACAAAAAAAG+TGG - chr4.1:38222229-38222248 None:intergenic 30.0%
! AAGTGGGGCTTAATTTTTAA+TGG - chr4.1:38222381-38222400 None:intergenic 30.0%
! AATTCATCCATTGCTCTAAA+TGG - chr4.1:38226088-38226107 None:intergenic 30.0%
! ATGCTAATTTTTCTGCTTAC+TGG - chr4.1:38226335-38226354 None:intergenic 30.0%
! ATTCATCCATTGCTCTAAAT+GGG - chr4.1:38226087-38226106 None:intergenic 30.0%
! TAAATAGTAAGGGGCATAAT+AGG + chr4.1:38223060-38223079 MS.gene08578:intron 30.0%
! TAAGCATCTAGTTTACACTT+TGG + chr4.1:38226252-38226271 MS.gene08578:intron 30.0%
! TAATTCTGGCTAAGGAATTA+AGG - chr4.1:38222885-38222904 None:intergenic 30.0%
! TCCCAAAAACTTATGCTTTT+GGG - chr4.1:38224038-38224057 None:intergenic 30.0%
! TCGCAGATTCTACATTTTTA+GGG - chr4.1:38221909-38221928 None:intergenic 30.0%
! TTCCCAAAAACTTATGCTTT+TGG - chr4.1:38224039-38224058 None:intergenic 30.0%
! TTCGCAGATTCTACATTTTT+AGG - chr4.1:38221910-38221929 None:intergenic 30.0%
! TTCTACTTGCTGAGAATATT+AGG - chr4.1:38224251-38224270 None:intergenic 30.0%
!! ACTGTTTGTGAGTTGAATTT+TGG - chr4.1:38224545-38224564 None:intergenic 30.0%
!! ATAATGCTTTAGAGTTTCGA+AGG + chr4.1:38224969-38224988 MS.gene08578:CDS 30.0%
!! CCTTAGTAAGTTTTATCTTG+AGG + chr4.1:38224759-38224778 MS.gene08578:intron 30.0%
!! TAGTAAGTTTTATCTTGAGG+GGG + chr4.1:38224762-38224781 MS.gene08578:intron 30.0%
!! TCCCAAAAGCATAAGTTTTT+GGG + chr4.1:38224034-38224053 MS.gene08578:intron 30.0%
!! TTCGAAACTCTAAAGCATTA+TGG - chr4.1:38224970-38224989 None:intergenic 30.0%
!! TTGTTGCAAAATGATGGATA+TGG + chr4.1:38225444-38225463 MS.gene08578:intron 30.0%
!! TTTGTGAGTTGAATTTTGGA+GGG - chr4.1:38224541-38224560 None:intergenic 30.0%
!!! AAAGTACTACGGGTTTTAAA+CGG + chr4.1:38221387-38221406 MS.gene08578:intron 30.0%
!!! AACTTCGACTTTTTTCACAA+CGG - chr4.1:38221419-38221438 None:intergenic 30.0%
!!! ATTGCCACTTTTTTTGTTGT+AGG + chr4.1:38222222-38222241 MS.gene08578:intron 30.0%
!!! CCAAATCAAGTAGTTTTGTT+TGG - chr4.1:38226615-38226634 None:intergenic 30.0%
!!! GCAGTTTTATTAACAACTGA+AGG + chr4.1:38221026-38221045 MS.gene08578:intron 30.0%
!!! GGTTTCTTGCATTATTTTTG+AGG + chr4.1:38222859-38222878 MS.gene08578:intron 30.0%
!!! TAGTAAACGACATCGTTTTT+TGG - chr4.1:38222606-38222625 None:intergenic 30.0%
!!! TTTCATTTGTCCTAGTTTTG+TGG + chr4.1:38225833-38225852 MS.gene08578:intron 30.0%
AAAGGTCCTGCATGATATTA+AGG + chr4.1:38222110-38222129 MS.gene08578:CDS 35.0%
AACAGAACACACTATGCATT+AGG - chr4.1:38221634-38221653 None:intergenic 35.0%
AACAGTCAAACACACTCTAA+AGG + chr4.1:38224559-38224578 MS.gene08578:intron 35.0%
AAGAACCAGAAAAGCAAACA+AGG + chr4.1:38226529-38226548 MS.gene08578:intron 35.0%
AAGACAAATAGATGCAGTGA+CGG + chr4.1:38221981-38222000 MS.gene08578:CDS 35.0%
AATCTTATACCTTTCGAGCA+TGG + chr4.1:38225902-38225921 MS.gene08578:intron 35.0%
AATGAATTTGAATGCCCTGA+GGG - chr4.1:38223280-38223299 None:intergenic 35.0%
ACAGAACACACTATGCATTA+GGG - chr4.1:38221633-38221652 None:intergenic 35.0%
AGAACCAGAAAAGCAAACAA+GGG + chr4.1:38226530-38226549 MS.gene08578:intron 35.0%
AGCCATTCAACTTCAGATTA+AGG - chr4.1:38224093-38224112 None:intergenic 35.0%
AGCTCTGTTTGATGTATCTT+GGG - chr4.1:38225393-38225412 None:intergenic 35.0%
AGTGGATGTATTTGATCTGA+TGG - chr4.1:38222929-38222948 None:intergenic 35.0%
ATAAGTGTAGTGATCACTAG+AGG - chr4.1:38225951-38225970 None:intergenic 35.0%
ATATTTAGACCCCGAATCTT+AGG + chr4.1:38223181-38223200 MS.gene08578:intron 35.0%
ATCAGACTGCACAAGAATAA+AGG - chr4.1:38222013-38222032 None:intergenic 35.0%
ATCTAATACAGAGCTTCAAG+CGG - chr4.1:38224117-38224136 None:intergenic 35.0%
ATCTTATACCTTTCGAGCAT+GGG + chr4.1:38225903-38225922 MS.gene08578:intron 35.0%
ATGGTCCATACCATTAATGA+AGG - chr4.1:38223005-38223024 None:intergenic 35.0%
ATTAGCCCTTCATGAAATGA+CGG + chr4.1:38226057-38226076 MS.gene08578:CDS 35.0%
ATTATCCTGCAGTTTCAACA+AGG - chr4.1:38223561-38223580 None:intergenic 35.0%
ATTTAGCTAGCAATCTCATG+AGG + chr4.1:38226705-38226724 MS.gene08578:intron 35.0%
ATTTGACAAACTGTGTGGTA+TGG + chr4.1:38221797-38221816 MS.gene08578:intron 35.0%
CAAAGTAATCAAAACCACAC+CGG - chr4.1:38222696-38222715 None:intergenic 35.0%
CCGAATGATACTAGGTATAT+TGG + chr4.1:38226410-38226429 MS.gene08578:intron 35.0%
CGTTATATCACAATGCAAAG+AGG - chr4.1:38222729-38222748 None:intergenic 35.0%
GAAGGAGGCAATATACTTTA+AGG + chr4.1:38222837-38222856 MS.gene08578:intron 35.0%
GAGTACTTGTATAGCAGTAT+TGG - chr4.1:38222485-38222504 None:intergenic 35.0%
GCAAAAAATGAAAGAAGAGC+AGG + chr4.1:38221707-38221726 MS.gene08578:CDS 35.0%
GCCATTCAACTTCAGATTAA+GGG - chr4.1:38224092-38224111 None:intergenic 35.0%
GTATTCTGCTTGTTTGTTTG+AGG + chr4.1:38221076-38221095 MS.gene08578:intron 35.0%
GTTGAAGCATGTGAAAATCT+TGG + chr4.1:38221355-38221374 MS.gene08578:intron 35.0%
GTTTGAACTATGTTCCCATT+TGG + chr4.1:38224285-38224304 MS.gene08578:intron 35.0%
TAATTGTTGCCTAAGATTCG+GGG - chr4.1:38223193-38223212 None:intergenic 35.0%
TATTAATGCCTCACCCATAA+GGG + chr4.1:38224318-38224337 MS.gene08578:intron 35.0%
TGACTCTTGCATTTCATTTC+AGG + chr4.1:38225307-38225326 MS.gene08578:intron 35.0%
TGGAACAACTGTACAATACA+GGG + chr4.1:38225586-38225605 MS.gene08578:intron 35.0%
TGTGTGTGCATTTAATTAGG+CGG + chr4.1:38226004-38226023 MS.gene08578:intron 35.0%
TTATTAATGCCTCACCCATA+AGG + chr4.1:38224317-38224336 MS.gene08578:intron 35.0%
TTCAGATTAAGGGAAGACAA+TGG - chr4.1:38224082-38224101 None:intergenic 35.0%
TTCAGTCTCAGATTTCTCAA+GGG - chr4.1:38221947-38221966 None:intergenic 35.0%
TTCATTAATGGTATGGACCA+TGG + chr4.1:38223004-38223023 MS.gene08578:intron 35.0%
TTGCTTCATGAGGATAGAAT+AGG + chr4.1:38224659-38224678 MS.gene08578:intron 35.0%
TTTGGGAACGTTCGTTATAT+GGG + chr4.1:38224051-38224070 MS.gene08578:intron 35.0%
! ACCATGTTTCCGAAAGTATA+AGG - chr4.1:38221546-38221565 None:intergenic 35.0%
! ACGCTTGCTTTAGACAAAAT+TGG - chr4.1:38221498-38221517 None:intergenic 35.0%
! CCGAATCAATTGATGATCTA+AGG + chr4.1:38223855-38223874 MS.gene08578:CDS 35.0%
! GAAAAAGTAGAGGAGCATAA+AGG + chr4.1:38221181-38221200 MS.gene08578:intron 35.0%
! GAGGATATTTAAAGTAGTCC+AGG - chr4.1:38225109-38225128 None:intergenic 35.0%
! GTTCGTTTGTTGCAAAATGA+TGG + chr4.1:38225438-38225457 MS.gene08578:intron 35.0%
! TACTTGTATAGCAGTATTGG+CGG - chr4.1:38222482-38222501 None:intergenic 35.0%
! TCACTTGTTCTTCCATTTTG+AGG + chr4.1:38224636-38224655 MS.gene08578:intron 35.0%
! TCCCTTAATCTGAAGTTGAA+TGG + chr4.1:38224088-38224107 MS.gene08578:intron 35.0%
! TGACATATAATTTGGGACTG+AGG + chr4.1:38223154-38223173 MS.gene08578:intron 35.0%
! TGTAGCTTTTGAATAAGACG+TGG + chr4.1:38225566-38225585 MS.gene08578:intron 35.0%
! TTCATCCATTGCTCTAAATG+GGG - chr4.1:38226086-38226105 None:intergenic 35.0%
!! AAACTTATGCTTTTGGGAGA+AGG - chr4.1:38224032-38224051 None:intergenic 35.0%
!! AACTTATGCTTTTGGGAGAA+GGG - chr4.1:38224031-38224050 None:intergenic 35.0%
!! AGTAAGTTTTATCTTGAGGG+GGG + chr4.1:38224763-38224782 MS.gene08578:intron 35.0%
!! ATAAGGCTTGTTGATGTTGT+TGG + chr4.1:38221598-38221617 MS.gene08578:intron 35.0%
!! CTCCCAAAAGCATAAGTTTT+TGG + chr4.1:38224033-38224052 MS.gene08578:intron 35.0%
!! GATTTAATGGCCTTTTGAAG+AGG + chr4.1:38225136-38225155 MS.gene08578:intron 35.0%
!! GTTTGTGAGTTGAATTTTGG+AGG - chr4.1:38224542-38224561 None:intergenic 35.0%
!! TGAATTTTGGAGGGTTTTAG+AGG - chr4.1:38224532-38224551 None:intergenic 35.0%
!! TTTTGGGAACGTTCGTTATA+TGG + chr4.1:38224050-38224069 MS.gene08578:intron 35.0%
!!! GAATTTTGGAGGGTTTTAGA+GGG - chr4.1:38224531-38224550 None:intergenic 35.0%
!!! GACATCGTTTTTTGGCATAT+AGG - chr4.1:38222598-38222617 None:intergenic 35.0%
!!! GTGTGTTTTGTTTGCTCATT+TGG + chr4.1:38226190-38226209 MS.gene08578:intron 35.0%
!!! TATTTTTGGTTTCCCTCTGT+AGG + chr4.1:38223828-38223847 MS.gene08578:intron 35.0%
!!! TCGCTTTTATGTAAGTTGGT+AGG - chr4.1:38222563-38222582 None:intergenic 35.0%
!!! TTTTTTCACTCAGTTGGTTC+AGG + chr4.1:38224172-38224191 MS.gene08578:intron 35.0%
AATACAGGCACCACTTAACA+AGG - chr4.1:38226491-38226510 None:intergenic 40.0%
ACTAACCTTGTTGAAACTGC+AGG + chr4.1:38223553-38223572 MS.gene08578:intron 40.0%
ACTTACTAAGGTAGCTCAAC+TGG - chr4.1:38224750-38224769 None:intergenic 40.0%
ATCTCAAGCATCAGCTTTCT+TGG + chr4.1:38225017-38225036 MS.gene08578:CDS 40.0%
ATGAATTTGAATGCCCTGAG+GGG - chr4.1:38223279-38223298 None:intergenic 40.0%
ATTGGACCGTTCAAATTCAC+CGG + chr4.1:38222674-38222693 MS.gene08578:intron 40.0%
ATTTGATCTGATGGCCGTTA+AGG - chr4.1:38222920-38222939 None:intergenic 40.0%
CAATGAATTTGAATGCCCTG+AGG - chr4.1:38223281-38223300 None:intergenic 40.0%
CACACACACACATATAGACT+TGG + chr4.1:38224490-38224509 MS.gene08578:intron 40.0%
CAGCTCTGTTTGATGTATCT+TGG - chr4.1:38225394-38225413 None:intergenic 40.0%
CAGGGTTAAGAAGATGCAAA+TGG + chr4.1:38226863-38226882 MS.gene08578:CDS 40.0%
CTCATGAAGCAACCTCAAAA+TGG - chr4.1:38224651-38224670 None:intergenic 40.0%
GCAAGATGAACTGTCAATTG+AGG - chr4.1:38223369-38223388 None:intergenic 40.0%
GCCTTATACTTTCGGAAACA+TGG + chr4.1:38221542-38221561 MS.gene08578:intron 40.0%
GCGACCGCTACAATAATATT+GGG + chr4.1:38226463-38226482 MS.gene08578:intron 40.0%
GCTCTGTTTGATGTATCTTG+GGG - chr4.1:38225392-38225411 None:intergenic 40.0%
GGCACCCAATATTATTGTAG+CGG - chr4.1:38226470-38226489 None:intergenic 40.0%
GGCCATTAAATCTGATCATG+AGG - chr4.1:38225128-38225147 None:intergenic 40.0%
GTCATCCTGACAGCAAATTA+TGG - chr4.1:38223597-38223616 None:intergenic 40.0%
GTGGAACAACTGTACAATAC+AGG + chr4.1:38225585-38225604 MS.gene08578:intron 40.0%
GTGTGTGCATTTAATTAGGC+GGG + chr4.1:38226005-38226024 MS.gene08578:intron 40.0%
GTGTTATGGGATTACTCCTT+AGG + chr4.1:38223496-38223515 MS.gene08578:intron 40.0%
GTTCAGTCTCAGATTTCTCA+AGG - chr4.1:38221948-38221967 None:intergenic 40.0%
TGATCACTAGAGGTCTCTAA+TGG - chr4.1:38225941-38225960 None:intergenic 40.0%
TGTGTGCATTTAATTAGGCG+GGG + chr4.1:38226006-38226025 MS.gene08578:intron 40.0%
TTAACCACCTTACGTGAAAC+TGG - chr4.1:38222646-38222665 None:intergenic 40.0%
TTAATTCACCCATGCTCGAA+AGG - chr4.1:38225914-38225933 None:intergenic 40.0%
TTAGAGGGAAAGGATATGGA+GGG - chr4.1:38224516-38224535 None:intergenic 40.0%
TTCAACAATCTCATCAACCG+AGG - chr4.1:38220950-38220969 None:intergenic 40.0%
TTTAGAGGGAAAGGATATGG+AGG - chr4.1:38224517-38224536 None:intergenic 40.0%
! AAGCCTTATCCCATTAAGTG+GGG - chr4.1:38221587-38221606 None:intergenic 40.0%
! ACAAGCCTTATCCCATTAAG+TGG - chr4.1:38221589-38221608 None:intergenic 40.0%
! ATATTGGGTGCCTTGTTAAG+TGG + chr4.1:38226478-38226497 MS.gene08578:intron 40.0%
! CAAGCCTTATCCCATTAAGT+GGG - chr4.1:38221588-38221607 None:intergenic 40.0%
! TAGCGAAGTACCACAAAACT+AGG - chr4.1:38225846-38225865 None:intergenic 40.0%
! TCCTCTTGTTTCAAAGCAGA+TGG + chr4.1:38225509-38225528 MS.gene08578:intron 40.0%
! TGATTCGGAATACCTACAGA+GGG - chr4.1:38223843-38223862 None:intergenic 40.0%
!! AATGGCCTTTTGAAGAGGAA+GGG + chr4.1:38225141-38225160 MS.gene08578:CDS 40.0%
!! ATTGATTTTGCTGAGGCACA+AGG + chr4.1:38226365-38226384 MS.gene08578:CDS 40.0%
!! ATTTCAGCACTGATTTGCTC+TGG - chr4.1:38223653-38223672 None:intergenic 40.0%
!! CACTCTGATTGATTTTGCTG+AGG + chr4.1:38226358-38226377 MS.gene08578:CDS 40.0%
!! TAATGGCCTTTTGAAGAGGA+AGG + chr4.1:38225140-38225159 MS.gene08578:CDS 40.0%
!! TCCATCTGCTTTGAAACAAG+AGG - chr4.1:38225513-38225532 None:intergenic 40.0%
!! TTGATTCGGAATACCTACAG+AGG - chr4.1:38223844-38223863 None:intergenic 40.0%
!! TTTCAGCACTGATTTGCTCT+GGG - chr4.1:38223652-38223671 None:intergenic 40.0%
!! TTTGCGAGTTGGTTTCTAGA+GGG + chr4.1:38224345-38224364 MS.gene08578:intron 40.0%
!! TTTTTGGCCAGTTTCACGTA+AGG + chr4.1:38222636-38222655 MS.gene08578:intron 40.0%
!!! CATTTTGAGGTTGCTTCATG+AGG + chr4.1:38224649-38224668 MS.gene08578:intron 40.0%
!!! CGGTGTGGTTTTGATTACTT+TGG + chr4.1:38222694-38222713 MS.gene08578:intron 40.0%
!!! GGTTTTAGAGGGAAAGGATA+TGG - chr4.1:38224520-38224539 None:intergenic 40.0%
!!! GTAGTTTTGTTTGGAAGTGC+AGG - chr4.1:38226606-38226625 None:intergenic 40.0%
AACTCGCAAACACACCCTTA+TGG - chr4.1:38224335-38224354 None:intergenic 45.0%
AACTGCACCAGTTCAATGGT+CGG - chr4.1:38222263-38222282 None:intergenic 45.0%
ACAAATAGATGCAGTGACGG+AGG + chr4.1:38221984-38222003 MS.gene08578:CDS 45.0%
ACAAGCGACTGAAAGTAGCT+CGG + chr4.1:38220915-38220934 MS.gene08578:CDS 45.0%
ACCACACCGGTGAATTTGAA+CGG - chr4.1:38222683-38222702 None:intergenic 45.0%
ACTCGCAAACACACCCTTAT+GGG - chr4.1:38224334-38224353 None:intergenic 45.0%
ATCTCATCAACCGAGGACAA+AGG - chr4.1:38220943-38220962 None:intergenic 45.0%
CATTGAACTGGTGCAGTTCA+AGG + chr4.1:38222265-38222284 MS.gene08578:intron 45.0%
CTGCCTCCTTAATATCATGC+AGG - chr4.1:38222119-38222138 None:intergenic 45.0%
CTTGAACTGCACCAGTTCAA+TGG - chr4.1:38222267-38222286 None:intergenic 45.0%
CTTTCGGAAACATGGTAGAC+TGG + chr4.1:38221550-38221569 MS.gene08578:intron 45.0%
GCATGATATTAAGGAGGCAG+AGG + chr4.1:38222119-38222138 MS.gene08578:CDS 45.0%
GGCGACCGCTACAATAATAT+TGG + chr4.1:38226462-38226481 MS.gene08578:intron 45.0%
GGTCCTGCATGATATTAAGG+AGG + chr4.1:38222113-38222132 MS.gene08578:CDS 45.0%
GTGTGCTTGTGTCGTATTGA+AGG + chr4.1:38222819-38222838 MS.gene08578:intron 45.0%
GTGTTTGAATGTGTGCAGCT+TGG + chr4.1:38226827-38226846 MS.gene08578:intron 45.0%
TAGGGCTTCTGCTTCCTTAA+CGG + chr4.1:38222903-38222922 MS.gene08578:intron 45.0%
TCGTATATCTCATCCCCTCA+GGG + chr4.1:38223263-38223282 MS.gene08578:intron 45.0%
TGATCACCCCGAATGATACT+AGG + chr4.1:38226402-38226421 MS.gene08578:CDS 45.0%
TGCTTGTGTCGTATTGAAGG+AGG + chr4.1:38222822-38222841 MS.gene08578:intron 45.0%
TGTAACTGGGTTTGACATGC+AGG + chr4.1:38226307-38226326 MS.gene08578:intron 45.0%
! AATGTGTGCAGCTTGGTGAA+GGG + chr4.1:38226834-38226853 MS.gene08578:intron 45.0%
! AGAAGCCCTAATTCTGGCTA+AGG - chr4.1:38222893-38222912 None:intergenic 45.0%
! ATAAGGGTGTGTTTGCGAGT+TGG + chr4.1:38224334-38224353 MS.gene08578:intron 45.0%
! CTTGTTTGTTTGAGGGTGTG+CGG + chr4.1:38221084-38221103 MS.gene08578:intron 45.0%
! GGCTTTGATGCGAAGTTGTT+TGG - chr4.1:38221214-38221233 None:intergenic 45.0%
! TGTTTGGAAGTGCAGGAGTT+TGG - chr4.1:38226599-38226618 None:intergenic 45.0%
! TTGTTTGTTTGAGGGTGTGC+GGG + chr4.1:38221085-38221104 MS.gene08578:intron 45.0%
!! ATGGCCTTTTGAAGAGGAAG+GGG + chr4.1:38225142-38225161 MS.gene08578:CDS 45.0%
!! GCTCAACTGGTTTGAGCTAA+TGG - chr4.1:38224737-38224756 None:intergenic 45.0%
!! GGCTTCCATAATTTGCTGTC+AGG + chr4.1:38223589-38223608 MS.gene08578:CDS 45.0%
!! GTTTGCGAGTTGGTTTCTAG+AGG + chr4.1:38224344-38224363 MS.gene08578:intron 45.0%
!! TTCAGCACTGATTTGCTCTG+GGG - chr4.1:38223651-38223670 None:intergenic 45.0%
!! TTGCGAGTTGGTTTCTAGAG+GGG + chr4.1:38224346-38224365 MS.gene08578:intron 45.0%
!! TTGGCCCTTGTTTGCTTTTC+TGG - chr4.1:38226537-38226556 None:intergenic 45.0%
!!! TTGGAGGGTTTTAGAGGGAA+AGG - chr4.1:38224526-38224545 None:intergenic 45.0%
!! AAATTCATATATTTATTATT+AGG + chr4.1:38224794-38224813 MS.gene08578:intron 5.0%
AAACCAGCCGACCATTGAAC+TGG + chr4.1:38222253-38222272 MS.gene08578:intron 50.0%
ACAGAGCTGTTCGAGACACA+AGG + chr4.1:38225405-38225424 MS.gene08578:CDS 50.0%
ACCGTTCAAATTCACCGGTG+TGG + chr4.1:38222679-38222698 MS.gene08578:intron 50.0%
AGAGCTGTTCGAGACACAAG+GGG + chr4.1:38225407-38225426 MS.gene08578:CDS 50.0%
AGCCCTTCATGAAATGACGG+AGG + chr4.1:38226060-38226079 MS.gene08578:CDS 50.0%
AGGAGGCAGAGGAACACTAT+CGG + chr4.1:38222130-38222149 MS.gene08578:CDS 50.0%
CAAACACACCCTTATGGGTG+AGG - chr4.1:38224329-38224348 None:intergenic 50.0%
CACCAGACGTGTAGGGAAAA+AGG - chr4.1:38221150-38221169 None:intergenic 50.0%
CACTTAGGCGTGAGAGCAAA+AGG + chr4.1:38223690-38223709 MS.gene08578:CDS 50.0%
CAGAGCTGTTCGAGACACAA+GGG + chr4.1:38225406-38225425 MS.gene08578:CDS 50.0%
CGGGGTGATCAATATCCACT+GGG - chr4.1:38226393-38226412 None:intergenic 50.0%
CTCGTATATCTCATCCCCTC+AGG + chr4.1:38223262-38223281 MS.gene08578:intron 50.0%
CTTCGCTAGGAGGTTGTGAT+GGG + chr4.1:38223621-38223640 MS.gene08578:CDS 50.0%
GGAAGCAGAAGCCCTAATTC+TGG - chr4.1:38222899-38222918 None:intergenic 50.0%
GGACCCCACTTAATGGGATA+AGG + chr4.1:38221581-38221600 MS.gene08578:intron 50.0%
GGAGCTTACAAAAAGCCGTG+AGG + chr4.1:38222152-38222171 MS.gene08578:CDS 50.0%
GGCCTCCGTCATTTCATGAA+GGG - chr4.1:38226065-38226084 None:intergenic 50.0%
GTGGACGAGCTCTTGAAACA+TGG + chr4.1:38226795-38226814 MS.gene08578:intron 50.0%
TCGGGGTGATCAATATCCAC+TGG - chr4.1:38226394-38226413 None:intergenic 50.0%
TGACCCCCTTCCTCTTCAAA+AGG - chr4.1:38225149-38225168 None:intergenic 50.0%
TGTTAGAACGCCTTGAGCAG+AGG + chr4.1:38221733-38221752 MS.gene08578:CDS 50.0%
TTCCTTCCACCAGACGTGTA+GGG - chr4.1:38221157-38221176 None:intergenic 50.0%
TTGGCCAGTTTCACGTAAGG+TGG + chr4.1:38222639-38222658 MS.gene08578:intron 50.0%
TTTCCTTCCACCAGACGTGT+AGG - chr4.1:38221158-38221177 None:intergenic 50.0%
! CTTTTTCCCTACACGTCTGG+TGG + chr4.1:38221148-38221167 MS.gene08578:intron 50.0%
! GAATGTGTGCAGCTTGGTGA+AGG + chr4.1:38226833-38226852 MS.gene08578:intron 50.0%
! TGCCTTTTTCCCTACACGTC+TGG + chr4.1:38221145-38221164 MS.gene08578:intron 50.0%
! TGTTTGTTTGAGGGTGTGCG+GGG + chr4.1:38221086-38221105 MS.gene08578:intron 50.0%
!! TGGCCTTTTGAAGAGGAAGG+GGG + chr4.1:38225143-38225162 MS.gene08578:CDS 50.0%
CACAACCTCCTAGCGAAGCA+AGG - chr4.1:38223619-38223638 None:intergenic 55.0%
CAGGATGACCTTGCTTCGCT+AGG + chr4.1:38223608-38223627 MS.gene08578:CDS 55.0%
CGAGACACAAGGGGACTTTC+AGG + chr4.1:38225416-38225435 MS.gene08578:CDS 55.0%
CTTCATGCCTCCTCTGCTCA+AGG - chr4.1:38221746-38221765 None:intergenic 55.0%
CTTGGTGAAGGGAGGGAACA+GGG + chr4.1:38226845-38226864 MS.gene08578:CDS 55.0%
GATGACCTTGCTTCGCTAGG+AGG + chr4.1:38223611-38223630 MS.gene08578:CDS 55.0%
GCTTCGCTAGGAGGTTGTGA+TGG + chr4.1:38223620-38223639 MS.gene08578:CDS 55.0%
GGAGGCAGAGGAACACTATC+GGG + chr4.1:38222131-38222150 MS.gene08578:CDS 55.0%
GGGCCTCCGTCATTTCATGA+AGG - chr4.1:38226066-38226085 None:intergenic 55.0%
TAGAACGCCTTGAGCAGAGG+AGG + chr4.1:38221736-38221755 MS.gene08578:CDS 55.0%
TAGCTCGGCACCTTTGTCCT+CGG + chr4.1:38220930-38220949 MS.gene08578:CDS 55.0%
TTCCCTACACGTCTGGTGGA+AGG + chr4.1:38221152-38221171 MS.gene08578:intron 55.0%
TTGAAGAGGAAGGGGGTCAG+TGG + chr4.1:38225150-38225169 MS.gene08578:CDS 55.0%
! CAGAGGAGGCATGAAGCAGA+GGG + chr4.1:38221750-38221769 MS.gene08578:CDS 55.0%
! GGAGGCCCCATTTAGAGCAA+TGG + chr4.1:38226078-38226097 MS.gene08578:CDS 55.0%
! GTTTGTTTGAGGGTGTGCGG+GGG + chr4.1:38221087-38221106 MS.gene08578:intron 55.0%
! TGTGCAGCTTGGTGAAGGGA+GGG + chr4.1:38226838-38226857 MS.gene08578:intron 55.0%
!!! TGTGCGGGGGCTTGGTTTTA+TGG + chr4.1:38221100-38221119 MS.gene08578:intron 55.0%
CCATTAAGTGGGGTCCGCAG+GGG - chr4.1:38221577-38221596 None:intergenic 60.0%
CCCATTAAGTGGGGTCCGCA+GGG - chr4.1:38221578-38221597 None:intergenic 60.0%
CCCTGCGGACCCCACTTAAT+GGG + chr4.1:38221575-38221594 MS.gene08578:intron 60.0%
CTGAGGCACAAGGATCCCAG+TGG + chr4.1:38226375-38226394 MS.gene08578:CDS 60.0%
GCACCAGTTCAATGGTCGGC+TGG - chr4.1:38222259-38222278 None:intergenic 60.0%
TCCCATTAAGTGGGGTCCGC+AGG - chr4.1:38221579-38221598 None:intergenic 60.0%
! CATGGTAGACTGGTCCCCTG+CGG + chr4.1:38221560-38221579 MS.gene08578:intron 60.0%
! GCAGAGGAGGCATGAAGCAG+AGG + chr4.1:38221749-38221768 MS.gene08578:CDS 60.0%
! GCTTGGTGAAGGGAGGGAAC+AGG + chr4.1:38226844-38226863 MS.gene08578:intron 60.0%
! GTGTGCAGCTTGGTGAAGGG+AGG + chr4.1:38226837-38226856 MS.gene08578:intron 60.0%
CCCCTGCGGACCCCACTTAA+TGG + chr4.1:38221574-38221593 MS.gene08578:intron 65.0%
! TTTGAGGGTGTGCGGGGGCT+TGG + chr4.1:38221092-38221111 MS.gene08578:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 38220907 38226902 38220907 ID=MS.gene08578
chr4.1 mRNA 38220907 38226902 38220907 ID=MS.gene08578.t1;Parent=MS.gene08578
chr4.1 exon 38220907 38220978 38220907 ID=MS.gene08578.t1.exon1;Parent=MS.gene08578.t1
chr4.1 CDS 38220907 38220978 38220907 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38221699 38221813 38221699 ID=MS.gene08578.t1.exon2;Parent=MS.gene08578.t1
chr4.1 CDS 38221699 38221813 38221699 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38221920 38222005 38221920 ID=MS.gene08578.t1.exon3;Parent=MS.gene08578.t1
chr4.1 CDS 38221920 38222005 38221920 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38222078 38222173 38222078 ID=MS.gene08578.t1.exon4;Parent=MS.gene08578.t1
chr4.1 CDS 38222078 38222173 38222078 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38223575 38223711 38223575 ID=MS.gene08578.t1.exon5;Parent=MS.gene08578.t1
chr4.1 CDS 38223575 38223711 38223575 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38223850 38223952 38223850 ID=MS.gene08578.t1.exon6;Parent=MS.gene08578.t1
chr4.1 CDS 38223850 38223952 38223850 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38224962 38225041 38224962 ID=MS.gene08578.t1.exon7;Parent=MS.gene08578.t1
chr4.1 CDS 38224962 38225041 38224962 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38225137 38225215 38225137 ID=MS.gene08578.t1.exon8;Parent=MS.gene08578.t1
chr4.1 CDS 38225137 38225215 38225137 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38225380 38225437 38225380 ID=MS.gene08578.t1.exon9;Parent=MS.gene08578.t1
chr4.1 CDS 38225380 38225437 38225380 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38226023 38226120 38226023 ID=MS.gene08578.t1.exon10;Parent=MS.gene08578.t1
chr4.1 CDS 38226023 38226120 38226023 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38226329 38226423 38226329 ID=MS.gene08578.t1.exon11;Parent=MS.gene08578.t1
chr4.1 CDS 38226329 38226423 38226329 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
chr4.1 exon 38226845 38226902 38226845 ID=MS.gene08578.t1.exon12;Parent=MS.gene08578.t1
chr4.1 CDS 38226845 38226902 38226845 ID=cds.MS.gene08578.t1;Parent=MS.gene08578.t1
Gene Sequence

>MS.gene08578

ATGCGTCAACAAGCGACTGAAAGTAGCTCGGCACCTTTGTCCTCGGTTGATGAGATTGTTGAAGAAATTTCAGTATGTTCTCTATCATCTATTCTCCAACAACATATTACTTGTTATAAGCAGTTTTATTAACAACTGAAGGCTCAATGCACAATCATTCACTCTAATAGTATTCTGCTTGTTTGTTTGAGGGTGTGCGGGGGCTTGGTTTTATGGAATTCAACTCTTAGTAGGCTTATGCCTTTTTCCCTACACGTCTGGTGGAAGGAAATAAGAAAAAGTAGAGGAGCATAAAGGAAAAAAACCAAACAACTTCGCATCAAAGCCTTTGTTTATTTATCATATAACCAATTTTGTTAAATTGAGTTTAAAATAATAGGATCGTTCAGTATGGGCAAATGAATTGTATAGTAAATTCGTGCAGTTGCTTTTGAATTTCGCTCTAATTGTTGAAGCATGTGAAAATCTTGGTTAATTTATAAAGTACTACGGGTTTTAAACGGATTACACCGTTGTGAAAAAAGTCGAAGTTATAAAGCAGGTAAATATTTAGTGAAATCATAATCAAACAAATATATACACTTCTAGCCAATTTTGTCTAAAGCAAGCGTCTTGCTTCTCTGAGATTTATTCTTGCCTTATACTTTCGGAAACATGGTAGACTGGTCCCCTGCGGACCCCACTTAATGGGATAAGGCTTGTTGATGTTGTTGGTAGACTGTTCCCTAATGCATAGTGTGTTCTGTTTTTCACCCAAAGTTTAATCCATATATTATTCGAATTGAATGCTAGGAAATAAAGCAAAAAATGAAAGAAGAGCAGGTGTTGTTAGAACGCCTTGAGCAGAGGAGGCATGAAGCAGAGGGAAAAGCAGATGATCTGAAAGTAAAATTTGACAAACTGTGTGGTATGGTGCATTACTAGTTATTTCTGAGTTTGTTCATATGCAGTTATGTTGATTTAACTGTAGAAATGTTGCATAGTGCATAATTTTGTGTACCCTAAAAATGTAGAATCTGCGAACACTGAACTTGCTTCCCTTGAGAAATCTGAGACTGAACTTATAGAGATTGAAAGACAAATAGATGCAGTGACGGAGGTATCCTTTATTCTTGTGCAGTCTGATAGTTTCTATTGTTACATAAATAATAACTTTATTAAAAAATTACAGGCGAAGGATCATTATGAAAATTTCATGAAAACAAAGGTCCTGCATGATATTAAGGAGGCAGAGGAACACTATCGGGAGCTTACAAAAAGCCGTGAGGTGCAATTTGATTTATATTAGTCATCTAAATTGGTAGATTATATTATCATTGCCACTTTTTTTGTTGTAGGCAAACGCTAAACCAGCCGACCATTGAACTGGTGCAGTTCAAGGCTCTGATAATTAATTAAATTTTTTTATTTTTCAAATATAATATATAAATAAATAATAAACAAAAAATAACATAATATTCATAACTTGAAACCATTAAAAATTAAGCCCCACTTAAAAATATCACAAGTCAACATAATAACATGCATAATTACACATTAAACCAAATCAAATATGTCATAAATATTGAATAACCGCCAATACTGCTATACAAGTACTCCCATAATAATGTTAATGTACACACTAAATTTCAATTTTGTTTAGTGTTCGATATACCTACCAACTTACATAAAAGCGAATAAAAGTTTATCCTATATGCCAAAAAACGATGTCGTTTACTAGCACATTTTGTTTTTGGCCAGTTTCACGTAAGGTGGTTAATAAGTTTAATTGGACCGTTCAAATTCACCGGTGTGGTTTTGATTACTTTGGTTGAGAGTCCCTCTTTGCATTGTGATATAACGTGAATAATGGTTAATGAGCTCGACCATAAACTTAGTTAGTGATTCTTTAAACTATTCAAATAATGGTGCTGTGTGCTTGTGTCGTATTGAAGGAGGCAATATACTTTAAGGGTTTCTTGCATTATTTTTGAGGCCTTAATTCCTTAGCCAGAATTAGGGCTTCTGCTTCCTTAACGGCCATCAGATCAAATACATCCACTTCTACATTAATGTTGTATAAAAAGAGAAATTATGAGTTATTTTACAAAAATATCCTTCATTAATGGTATGGACCATGGAAAACATAAAAGAATTGGAAAAAGATCAAGTAATAAATAGTAAGGGGCATAATAGGAAAATAAGCATTAATAGTTCATTGATATTGTAAAATGACATATAATTTGGGACAAACATATTTTGCTAGAATGACATATAATTTGGGACTGAGGTAGTATATTTAGACCCCGAATCTTAGGCAACAATTATGTTTTTTGGTCTAATTTGTGTGACTTATTACATTACAATTGGATTTTACTCGTATATCTCATCCCCTCAGGGCATTCAAATTCATTGTTGCACATAAAAAAAAAAACTGGGTTTTGTCCTCATTGTTGCACATAAAAAAAACTGGGTTTTGTCCTCAATTGACAGTTCATCTTGCTTATTATTACTCTTATGTTTGATTAATTTGGCTGTGCAAGAAATCTGTTATGCAGAGCTTCATCAAGTCTCTATGCACTCCAGATTTTCCTTTTAAATAAAATTGATGTGTTATGGGATTACTCCTTAGGCATTAAAGATATAGTAGTAACTACAGTTACTGATACTAACCTTGTTGAAACTGCAGGATAATGTTAAAAAGGCTTCCATAATTTGCTGTCAGGATGACCTTGCTTCGCTAGGAGGTTGTGATGGGAAAACCCCAGAGCAAATCAGTGCTGAAATAGAAAGTCTAAATCATACACTTAGGCGTGAGAGCAAAAGGCACGACATTAGACTATTGATTCACATTATCATGTTACAACATGCTAGAAGAAGCTTCTCTTTCTCTCTCTCTCTCACACACTCTATACTCACGCACATTGAATCATGCTTTTCATTATTTTTGGTTTCCCTCTGTAGGTATTCCGAATCAATTGATGATCTAAGGATGCTATATGCGAAAAAAGAACGAAAGATTATAAAAAGGCAGCAAGTTTACAAAGCCCTTCGACAGAAATTGAATGTATGTATTCTTTGGTTTTGTTATCTTATCATTAATCTCTTTTTATGGATATTGTTCGGTAGTAAAACTCTTTGTCCCTTCTCCCAAAAGCATAAGTTTTTGGGAACGTTCGTTATATGGGTTTGTCCATTGTCTTCCCTTAATCTGAAGTTGAATGGCTTCCGCTTGAAGCTCTGTATTAGATATATAACTATTCATGTGCTTAATATAAAGTTAAAGTTTTTTCACTCAGTTGGTTCAGGAAAAATATATTAATTCTTGTTGGATATTTGGTTCTAACACTATTGTTTTGCAACCTAATATTCTCAGCAAGTAGAATGAAATACATTTCTGTTTGAACTATGTTCCCATTTGGAATTATTAATTATTAATGCCTCACCCATAAGGGTGTGTTTGCGAGTTGGTTTCTAGAGGGGAGAGTTTTAGTCTATATTTTGATATTTAAAAAAAATTAAAAGAAAAACATGATATAACATACTTACGTACCATGTTGTTCTTTCAATATTTTTTTTTTTTTTGAAATATAAAATACACACACACACACACACATATAGACTTGGCCCTCCATATCCTTTCCCTCTAAAACCCTCCAAAATTCAACTCACAAACAGTCAAACACACTCTAAAGGTTCTGATCCTATTTTTTATTTTTTTATGTGTTATTGTAGTAAGGTAATTGGTAGTCACTTGTTCTTCCATTTTGAGGTTGCTTCATGAGGATAGAATAGGAATGTAGACTTTTATGGTTCTGAATTTATTTATTTTTTGACTCAAGCTTCTTCCATTAGCTCAAACCAGTTGAGCTACCTTAGTAAGTTTTATCTTGAGGGGGGTTAGAATCAAATTCATATATTTATTATTAGGATCATAATCATAGATTGGGATCTCAGTTAGCGATTTTTTGTATTTATTGTATATGCTACTAATAAAATAAATAGAGACGAGCAGTCAAATTTAGACACAATTACAAATTCAACACATTTTGAGGTGATTTTATTGTTTATTGAAGGCTTGCCATAATGCTTTAGAGTTTCGAAGGAGAAAATTTCAGACAAATGCAACTAATCTCAAGCATCAGCTTTCTTGGAAGTATGATTCCTTTCACATATTTTTGTTGCTACGATTTTATTTGTCCTTTTTTTTTTTCTCTAAACCTGGACTACTTTAAATATCCTCATGATCAGATTTAATGGCCTTTTGAAGAGGAAGGGGGTCAGTGGACTTATCAAAGTTGATTATGAGGAAACGACCTTATCGATTGAGGTAAATTTGGTATTCTTTTGCTCTATGTTCTCCATTTTCAGTTTCCTTTTTTACTTTTCATTTACCTTTTTATGGTAATTAATTGGTGAAATGACTCTTGCATTTCATTTCAGGTATCTGACCTAAAACGTTTACTTATTTTAATTTGCTTCTTTTGTTTATAGGTACAAATGCCCCAAGATACATCAAACAGAGCTGTTCGAGACACAAGGGGACTTTCAGGTTCGTTTGTTGCAAAATGATGGATATGGTGCCATTATTTATACATACAATAAACTATCAGTTCTTTTGTCTCCTCTTGTTTCAAAGCAGATGGACATTGCAAACAATAATTGTATCATATGGTCTTATGTAGCTTTTGAATAAGACGTGGAACAACTGTACAATACAGGGATATAACTAATTCTAAAGATTACGAGGCACAACTCAGCTATAATAGAGCACATAGAATTAATTTAGGAAAAAAAAATACAAATCTGAATTGAAAAGAGAGAACTTAATGTTTTAATAGTTAGCATGAGTCATTATAAAAAAAACAAATGCTATCATTCTATTTATTTTTGTAGTTTTTTTTTTTTTTTTTGAGTTTTAATTTATTTTTCTGGATATGTTTGAAATTTCATTTGTCCTAGTTTTGTGGTACTTCGCTATCTGTATTGTGATAAAAATTATAACTACAATTATACAATCTTATACCTTTCGAGCATGGGTGAATTAATAAGCCATTAGAGACCTCTAGTGATCACTACACTTATTTAATGCGATTTGTATACTTTGTCACATTTTGTTGTGTGTGCATTTAATTAGGCGGGGAGCGCTCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACGGAGGCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGTATGGCTGTTTACTGCTGATAGATAATTTACCATTAGTATTTTACCAGTGTAATCTAAATAAACTATTGTGTGTTTTGTTTGCTCATTTGGTGAATTTTATCTCTAGATATATCTAAAGTTAGTAGAAATTAAGCATCTAGTTTACACTTTGGTACAAAGTTTAAAATCTGTTAATTGACTACTATGTAACTGGGTTTGACATGCAGGATCCAGTAAGCAGAAAAATTAGCATGGACACTCTGATTGATTTTGCTGAGGCACAAGGATCCCAGTGGATATTGATCACCCCGAATGATACTAGGTATATTGGTTTCAAATATGGACATTATTATTTGTTCTGGCGACCGCTACAATAATATTGGGTGCCTTGTTAAGTGGTGCCTGTATTATACTTAAGTAGGTTTTTAAGAACCAGAAAAGCAAACAAGGGCCAAGAAAAGTAATGTCTGATATACAGAAAGTCTAACTTTAAGCCAAACTCCTGCACTTCCAAACAAAACTACTTGATTTGGATAAATTTATACATATAGAAGAATAAATATTAAAAGAATCTTTAGTTTAGATAGCACACTGATTTAAAAAATTTAGCTAGCAATCTCATGAGGATCATTTTATTATTGAAGTGACATGGTGACTATTTCTCTTTTTTTACAATACATATTGAACAGCAAAGTGGACGAGCTCTTGAAACATGGCTTATTTTTGTGTTTGAATGTGTGCAGCTTGGTGAAGGGAGGGAACAGGGTTAAGAAGATGCAAATGGCAGCTCCCCGTGCTTGA

Protein sequence

>MS.gene08578.t1

MRQQATESSSAPLSSVDEIVEEISEIKQKMKEEQVLLERLEQRRHEAEGKADDLKVKFDKLCESANTELASLEKSETELIEIERQIDAVTEAKDHYENFMKTKVLHDIKEAEEHYRELTKSREDNVKKASIICCQDDLASLGGCDGKTPEQISAEIESLNHTLRRESKRYSESIDDLRMLYAKKERKIIKRQQVYKALRQKLNACHNALEFRRRKFQTNATNLKHQLSWKFNGLLKRKGVSGLIKVDYEETTLSIEVQMPQDTSNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDPVSRKISMDTLIDFAEAQGSQWILITPNDTSLVKGGNRVKKMQMAAPRA