Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08783.t1 | XP_003629701.1 | 93.8 | 161 | 7 | 1 | 1 | 158 | 1 | 161 | 2.40E-77 | 298.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08783.t1 | G7LHY3 | 93.8 | 161 | 7 | 1 | 1 | 158 | 1 | 161 | 1.7e-77 | 298.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene08783 | -0.817561 | 3.09E-52 | -1.69E-46 |
MS.gene049350 | MS.gene08783 | -0.819751 | 9.85E-53 | -1.69E-46 |
MS.gene049411 | MS.gene08783 | -0.810992 | 8.75E-51 | -1.69E-46 |
MS.gene049807 | MS.gene08783 | -0.800806 | 1.21E-48 | -1.69E-46 |
MS.gene050838 | MS.gene08783 | -0.836272 | 1.03E-56 | -1.69E-46 |
MS.gene050901 | MS.gene08783 | -0.802411 | 5.68E-49 | -1.69E-46 |
MS.gene051003 | MS.gene08783 | -0.821845 | 3.25E-53 | -1.69E-46 |
MS.gene051234 | MS.gene08783 | -0.83157 | 1.55E-55 | -1.69E-46 |
MS.gene051343 | MS.gene08783 | -0.848699 | 5.19E-60 | -1.69E-46 |
MS.gene051676 | MS.gene08783 | -0.804475 | 2.12E-49 | -1.69E-46 |
MS.gene051975 | MS.gene08783 | -0.821517 | 3.87E-53 | -1.69E-46 |
MS.gene052072 | MS.gene08783 | -0.824679 | 7.08E-54 | -1.69E-46 |
MS.gene052307 | MS.gene08783 | -0.821095 | 4.84E-53 | -1.69E-46 |
MS.gene052609 | MS.gene08783 | -0.815954 | 7.09E-52 | -1.69E-46 |
MS.gene053143 | MS.gene08783 | -0.818532 | 1.87E-52 | -1.69E-46 |
MS.gene05364 | MS.gene08783 | -0.803391 | 3.57E-49 | -1.69E-46 |
MS.gene054004 | MS.gene08783 | -0.805561 | 1.26E-49 | -1.69E-46 |
MS.gene055313 | MS.gene08783 | -0.803957 | 2.72E-49 | -1.69E-46 |
MS.gene055513 | MS.gene08783 | -0.840868 | 6.71E-58 | -1.69E-46 |
MS.gene056181 | MS.gene08783 | -0.810475 | 1.13E-50 | -1.69E-46 |
MS.gene056308 | MS.gene08783 | -0.824378 | 8.34E-54 | -1.69E-46 |
MS.gene057102 | MS.gene08783 | -0.824648 | 7.20E-54 | -1.69E-46 |
MS.gene059146 | MS.gene08783 | -0.813932 | 1.99E-51 | -1.69E-46 |
MS.gene059171 | MS.gene08783 | -0.817345 | 3.46E-52 | -1.69E-46 |
MS.gene059227 | MS.gene08783 | -0.84856 | 5.67E-60 | -1.69E-46 |
MS.gene059778 | MS.gene08783 | -0.836316 | 1.01E-56 | -1.69E-46 |
MS.gene05985 | MS.gene08783 | 0.813031 | 3.14E-51 | -1.69E-46 |
MS.gene061006 | MS.gene08783 | -0.820818 | 5.61E-53 | -1.69E-46 |
MS.gene061100 | MS.gene08783 | -0.842632 | 2.30E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08783.t1 | MTR_8g085590 | 93.789 | 161 | 7 | 1 | 1 | 158 | 1 | 161 | 5.66e-98 | 279 |
MS.gene08783.t1 | MTR_8g085580 | 41.270 | 126 | 72 | 2 | 23 | 147 | 22 | 146 | 1.54e-30 | 108 |
MS.gene08783.t1 | MTR_4g081560 | 41.026 | 117 | 67 | 2 | 31 | 146 | 29 | 144 | 3.19e-27 | 100 |
MS.gene08783.t1 | MTR_7g080280 | 37.778 | 135 | 77 | 4 | 18 | 150 | 32 | 161 | 4.91e-26 | 97.4 |
MS.gene08783.t1 | MTR_7g053107 | 35.088 | 114 | 72 | 2 | 31 | 143 | 36 | 148 | 3.51e-22 | 87.8 |
MS.gene08783.t1 | MTR_2g010970 | 34.188 | 117 | 75 | 2 | 31 | 146 | 28 | 143 | 1.29e-21 | 85.9 |
MS.gene08783.t1 | MTR_4g091980 | 31.111 | 135 | 91 | 2 | 12 | 145 | 12 | 145 | 1.58e-20 | 83.2 |
MS.gene08783.t1 | MTR_2g010970 | 35.227 | 88 | 56 | 1 | 31 | 118 | 28 | 114 | 3.36e-17 | 73.6 |
MS.gene08783.t1 | MTR_4g091930 | 28.148 | 135 | 95 | 2 | 12 | 145 | 12 | 145 | 3.89e-17 | 73.9 |
MS.gene08783.t1 | MTR_4g091970 | 27.632 | 152 | 105 | 4 | 1 | 150 | 3 | 151 | 2.33e-16 | 72.4 |
MS.gene08783.t1 | MTR_4g064460 | 29.661 | 118 | 81 | 2 | 29 | 145 | 29 | 145 | 1.06e-15 | 70.5 |
MS.gene08783.t1 | MTR_6g086680 | 30.534 | 131 | 85 | 3 | 23 | 149 | 27 | 155 | 2.21e-14 | 66.6 |
MS.gene08783.t1 | MTR_7g108775 | 29.008 | 131 | 88 | 3 | 16 | 143 | 14 | 142 | 2.81e-14 | 66.6 |
MS.gene08783.t1 | MTR_7g108775 | 29.008 | 131 | 88 | 3 | 16 | 143 | 14 | 142 | 4.85e-14 | 66.6 |
MS.gene08783.t1 | MTR_1g088250 | 35.652 | 115 | 68 | 4 | 32 | 143 | 25 | 136 | 8.22e-14 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08783.t1 | AT1G55265 | 60.000 | 115 | 46 | 0 | 30 | 144 | 53 | 167 | 1.61e-46 | 149 |
MS.gene08783.t1 | AT5G19860 | 41.379 | 116 | 66 | 2 | 29 | 143 | 34 | 148 | 9.66e-27 | 99.8 |
MS.gene08783.t1 | AT1G61667 | 38.462 | 117 | 69 | 3 | 29 | 143 | 20 | 135 | 1.09e-25 | 96.3 |
MS.gene08783.t1 | AT1G61667 | 38.462 | 117 | 69 | 3 | 29 | 143 | 56 | 171 | 1.45e-25 | 96.7 |
MS.gene08783.t1 | AT5G54530 | 38.261 | 115 | 69 | 2 | 31 | 144 | 29 | 142 | 1.83e-24 | 93.2 |
MS.gene08783.t1 | AT3G07470 | 29.747 | 158 | 108 | 3 | 1 | 156 | 1 | 157 | 2.52e-20 | 82.4 |
MS.gene08783.t1 | AT3G07470 | 31.034 | 145 | 97 | 3 | 1 | 143 | 1 | 144 | 1.76e-19 | 80.1 |
MS.gene08783.t1 | AT3G07470 | 31.034 | 145 | 97 | 3 | 1 | 143 | 1 | 144 | 2.12e-19 | 80.1 |
MS.gene08783.t1 | AT5G16380 | 31.757 | 148 | 93 | 6 | 12 | 156 | 14 | 156 | 4.30e-18 | 77.4 |
MS.gene08783.t1 | AT3G07460 | 29.927 | 137 | 93 | 3 | 19 | 153 | 18 | 153 | 6.68e-18 | 76.6 |
MS.gene08783.t1 | AT3G07460 | 29.927 | 137 | 93 | 3 | 19 | 153 | 18 | 153 | 3.77e-17 | 76.3 |
MS.gene08783.t1 | AT1G02813 | 28.467 | 137 | 95 | 2 | 8 | 143 | 2 | 136 | 1.11e-16 | 72.8 |
MS.gene08783.t1 | AT4G02360 | 28.030 | 132 | 91 | 3 | 13 | 143 | 12 | 140 | 9.06e-14 | 65.1 |
MS.gene08783.t1 | AT1G02816 | 32.609 | 138 | 84 | 5 | 12 | 143 | 10 | 144 | 1.07e-13 | 65.5 |
MS.gene08783.t1 | AT2G03350 | 36.607 | 112 | 65 | 5 | 33 | 141 | 61 | 169 | 1.78e-13 | 65.1 |
MS.gene08783.t1 | AT5G19590 | 30.159 | 126 | 83 | 3 | 28 | 150 | 28 | 151 | 1.68e-12 | 61.6 |
MS.gene08783.t1 | AT5G19590 | 30.159 | 126 | 83 | 3 | 28 | 150 | 28 | 151 | 1.68e-12 | 61.6 |
Find 63 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCACTTACGGTTCCGTTTC+CGG | 0.165426 | 4.2:-12828340 | MS.gene08783:CDS |
TTCATCTGGCTCCCTGTTAC+TGG | 0.204778 | 4.2:-12828289 | MS.gene08783:CDS |
TTCCGGTGTTTCCGGGATTC+AGG | 0.260942 | 4.2:-12828323 | MS.gene08783:CDS |
TCAACTTCCATTCCAGTAAC+AGG | 0.329362 | 4.2:+12828277 | None:intergenic |
GGTTCCGTTTCCGGTGTTTC+CGG | 0.329438 | 4.2:-12828331 | MS.gene08783:CDS |
ATGGAAGTTGATTCCCGTTC+TGG | 0.333675 | 4.2:-12828265 | MS.gene08783:CDS |
GTTCCGTTTCCGGTGTTTCC+GGG | 0.340302 | 4.2:-12828330 | MS.gene08783:CDS |
ACCGGAGAAGCGAACGTAAC+AGG | 0.340745 | 4.2:+12828399 | None:intergenic |
GGTATGCTTCAATTCTTTGT+TGG | 0.346268 | 4.2:-12828244 | MS.gene08783:CDS |
GTGTAGGAGGCGATGTTGTT+AGG | 0.359883 | 4.2:+12828463 | None:intergenic |
TTCTGCAAGTAAATACTTTG+TGG | 0.366443 | 4.2:-12828158 | MS.gene08783:CDS |
CCCTGTTACGTTCGCTTCTC+CGG | 0.394931 | 4.2:-12828400 | MS.gene08783:CDS |
TGTTAGGAAGGATGCCCTTT+GGG | 0.399077 | 4.2:+12828479 | None:intergenic |
GCCCTTTGGGAAACCGTAAT+CGG | 0.407957 | 4.2:+12828492 | None:intergenic |
AGCTTTGTCTAAGAAATTAC+CGG | 0.420637 | 4.2:-12828221 | MS.gene08783:CDS |
CCCTTTGGGAAACCGTAATC+GGG | 0.430500 | 4.2:+12828493 | None:intergenic |
CACGACCTCCTCCCCGATTA+CGG | 0.436117 | 4.2:-12828505 | MS.gene08783:CDS |
TCCTACACCCTCTCCTCATC+CGG | 0.443813 | 4.2:-12828448 | MS.gene08783:CDS |
AGGCCAAGATGCTCTTCATC+TGG | 0.445884 | 4.2:-12828303 | MS.gene08783:CDS |
GAAGGGTTGTGGCTGTTGCA+TGG | 0.449955 | 4.2:+12828539 | None:intergenic |
GAATTGAAGCATACCAGAAC+GGG | 0.452831 | 4.2:+12828252 | None:intergenic |
CCCGATTACGGTTTCCCAAA+GGG | 0.457567 | 4.2:-12828493 | MS.gene08783:CDS |
TTGTTAGGAAGGATGCCCTT+TGG | 0.469698 | 4.2:+12828478 | None:intergenic |
CGTAATCGGGGAGGAGGTCG+TGG | 0.480861 | 4.2:+12828506 | None:intergenic |
TACTACGACACCCTCGTCAC+CGG | 0.484561 | 4.2:-12828367 | MS.gene08783:CDS |
AATCCCGGAAACACCGGAAA+CGG | 0.488780 | 4.2:+12828327 | None:intergenic |
CTGGCTCCCTGTTACTGGAA+TGG | 0.520106 | 4.2:-12828284 | MS.gene08783:CDS |
CTGTTGCATGGGATATGAAT+AGG | 0.520381 | 4.2:+12828551 | None:intergenic |
GAGATGGAGGGTGAAGTAAC+CGG | 0.520551 | 4.2:+12828429 | None:intergenic |
CCGGAGAAGCGAACGTAACA+GGG | 0.524118 | 4.2:+12828400 | None:intergenic |
AGGAGGCGATGTTGTTAGGA+AGG | 0.525908 | 4.2:+12828467 | None:intergenic |
AGGAGGTCGTGGATGTCCGA+TGG | 0.528432 | 4.2:+12828517 | None:intergenic |
GAGCATCTTGGCCTGAATCC+CGG | 0.529909 | 4.2:+12828312 | None:intergenic |
GAGGGTGAAGTAACCGGATG+AGG | 0.538161 | 4.2:+12828435 | None:intergenic |
GGAAACCGTAATCGGGGAGG+AGG | 0.542068 | 4.2:+12828500 | None:intergenic |
GGTCGTGGATGTCCGATGGA+AGG | 0.542935 | 4.2:+12828521 | None:intergenic |
GAGCCAGATGAAGAGCATCT+TGG | 0.544202 | 4.2:+12828300 | None:intergenic |
AAGGGTTGTGGCTGTTGCAT+GGG | 0.549396 | 4.2:+12828540 | None:intergenic |
CCCCGATTACGGTTTCCCAA+AGG | 0.549824 | 4.2:-12828494 | MS.gene08783:CDS |
AATCAGTTTCAAGATGTGCC+TGG | 0.550036 | 4.2:-12828196 | MS.gene08783:CDS |
AAGTGAGGGTTCCGGTGACG+AGG | 0.556293 | 4.2:+12828356 | None:intergenic |
GTCGTGGATGTCCGATGGAA+GGG | 0.557395 | 4.2:+12828522 | None:intergenic |
GGCCTGAATCCCGGAAACAC+CGG | 0.568473 | 4.2:+12828321 | None:intergenic |
ACATCTTGAAACTGATTCGC+CGG | 0.569152 | 4.2:+12828202 | None:intergenic |
GTCACCGGAACCCTCACTTA+CGG | 0.574574 | 4.2:-12828352 | MS.gene08783:CDS |
TGTTGAAAAGAATTGAAACA+AGG | 0.578826 | 4.2:+12828576 | None:intergenic |
ACCGGATGAGGAGAGGGTGT+AGG | 0.581276 | 4.2:+12828447 | None:intergenic |
GTCGTAGTAGACTAATTGAC+CGG | 0.588836 | 4.2:+12828381 | None:intergenic |
GAAGTAACCGGATGAGGAGA+GGG | 0.591167 | 4.2:+12828441 | None:intergenic |
CGGAAACGGAACCGTAAGTG+AGG | 0.593119 | 4.2:+12828341 | None:intergenic |
GGATGAGGAGAGGGTGTAGG+AGG | 0.593846 | 4.2:+12828450 | None:intergenic |
GGAACCGTAAGTGAGGGTTC+CGG | 0.598341 | 4.2:+12828348 | None:intergenic |
AACAGCCACAACCCTTCCAT+CGG | 0.601184 | 4.2:-12828533 | MS.gene08783:CDS |
AGAATTGAAGCATACCAGAA+CGG | 0.613753 | 4.2:+12828251 | None:intergenic |
TGAAGTAACCGGATGAGGAG+AGG | 0.621652 | 4.2:+12828440 | None:intergenic |
CAACTTCCATTCCAGTAACA+GGG | 0.628240 | 4.2:+12828278 | None:intergenic |
AGTGAGGGTTCCGGTGACGA+GGG | 0.629622 | 4.2:+12828357 | None:intergenic |
GATGTCCGATGGAAGGGTTG+TGG | 0.630291 | 4.2:+12828528 | None:intergenic |
TTGGGAAACCGTAATCGGGG+AGG | 0.667430 | 4.2:+12828497 | None:intergenic |
CCTTTGGGAAACCGTAATCG+GGG | 0.689281 | 4.2:+12828494 | None:intergenic |
CGGAGAAGCGAACGTAACAG+GGG | 0.693110 | 4.2:+12828401 | None:intergenic |
GGAAACGGAACCGTAAGTGA+GGG | 0.696303 | 4.2:+12828342 | None:intergenic |
GGAGAAGCGAACGTAACAGG+GGG | 0.736155 | 4.2:+12828402 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TGTTGAAAAGAATTGAAACA+AGG | + | chr4.2:12828169-12828188 | None:intergenic | 25.0% |
TTCTGCAAGTAAATACTTTG+TGG | - | chr4.2:12828584-12828603 | MS.gene08783:CDS | 30.0% | |
! | AGCTTTGTCTAAGAAATTAC+CGG | - | chr4.2:12828521-12828540 | MS.gene08783:CDS | 30.0% |
! | GAATTGAAACAAGGTTTTCA+AGG | + | chr4.2:12828160-12828179 | None:intergenic | 30.0% |
AGAATTGAAGCATACCAGAA+CGG | + | chr4.2:12828494-12828513 | None:intergenic | 35.0% | |
GGTATGCTTCAATTCTTTGT+TGG | - | chr4.2:12828498-12828517 | MS.gene08783:CDS | 35.0% | |
!! | AAACAAGGTTTTCAAGGTTC+TGG | + | chr4.2:12828154-12828173 | None:intergenic | 35.0% |
!! | GAAGTTTTTGAAGAACATCC+AGG | + | chr4.2:12828567-12828586 | None:intergenic | 35.0% |
AATCAGTTTCAAGATGTGCC+TGG | - | chr4.2:12828546-12828565 | MS.gene08783:CDS | 40.0% | |
CAACTTCCATTCCAGTAACA+GGG | + | chr4.2:12828467-12828486 | None:intergenic | 40.0% | |
CTGTTGCATGGGATATGAAT+AGG | + | chr4.2:12828194-12828213 | None:intergenic | 40.0% | |
GAATTGAAGCATACCAGAAC+GGG | + | chr4.2:12828493-12828512 | None:intergenic | 40.0% | |
GTCGTAGTAGACTAATTGAC+CGG | + | chr4.2:12828364-12828383 | None:intergenic | 40.0% | |
TCAACTTCCATTCCAGTAAC+AGG | + | chr4.2:12828468-12828487 | None:intergenic | 40.0% | |
!! | ACATCTTGAAACTGATTCGC+CGG | + | chr4.2:12828543-12828562 | None:intergenic | 40.0% |
TGTTAGGAAGGATGCCCTTT+GGG | + | chr4.2:12828266-12828285 | None:intergenic | 45.0% | |
TTGTTAGGAAGGATGCCCTT+TGG | + | chr4.2:12828267-12828286 | None:intergenic | 45.0% | |
! | ATGGAAGTTGATTCCCGTTC+TGG | - | chr4.2:12828477-12828496 | MS.gene08783:CDS | 45.0% |
!! | CAAGGTTTTCAAGGTTCTGG+TGG | + | chr4.2:12828151-12828170 | None:intergenic | 45.0% |
AACAGCCACAACCCTTCCAT+CGG | - | chr4.2:12828209-12828228 | MS.gene08783:CDS | 50.0% | |
AAGGGTTGTGGCTGTTGCAT+GGG | + | chr4.2:12828205-12828224 | None:intergenic | 50.0% | |
AATCCCGGAAACACCGGAAA+CGG | + | chr4.2:12828418-12828437 | None:intergenic | 50.0% | |
AGGAGGCGATGTTGTTAGGA+AGG | + | chr4.2:12828278-12828297 | None:intergenic | 50.0% | |
AGGCCAAGATGCTCTTCATC+TGG | - | chr4.2:12828439-12828458 | MS.gene08783:CDS | 50.0% | |
CCCGATTACGGTTTCCCAAA+GGG | - | chr4.2:12828249-12828268 | MS.gene08783:CDS | 50.0% | |
CTCACTTACGGTTCCGTTTC+CGG | - | chr4.2:12828402-12828421 | MS.gene08783:CDS | 50.0% | |
GAAGTAACCGGATGAGGAGA+GGG | + | chr4.2:12828304-12828323 | None:intergenic | 50.0% | |
GAGATGGAGGGTGAAGTAAC+CGG | + | chr4.2:12828316-12828335 | None:intergenic | 50.0% | |
GGAAACGGAACCGTAAGTGA+GGG | + | chr4.2:12828403-12828422 | None:intergenic | 50.0% | |
GTGTAGGAGGCGATGTTGTT+AGG | + | chr4.2:12828282-12828301 | None:intergenic | 50.0% | |
TGAAGTAACCGGATGAGGAG+AGG | + | chr4.2:12828305-12828324 | None:intergenic | 50.0% | |
! | CCCTTTGGGAAACCGTAATC+GGG | + | chr4.2:12828252-12828271 | None:intergenic | 50.0% |
! | CCTTTGGGAAACCGTAATCG+GGG | + | chr4.2:12828251-12828270 | None:intergenic | 50.0% |
! | GCCCTTTGGGAAACCGTAAT+CGG | + | chr4.2:12828253-12828272 | None:intergenic | 50.0% |
! | TTCATCTGGCTCCCTGTTAC+TGG | - | chr4.2:12828453-12828472 | MS.gene08783:CDS | 50.0% |
!! | GAGCCAGATGAAGAGCATCT+TGG | + | chr4.2:12828445-12828464 | None:intergenic | 50.0% |
AACAGGGGGATTGGAGATGG+AGG | + | chr4.2:12828329-12828348 | None:intergenic | 55.0% | |
ACAGGGGGATTGGAGATGGA+GGG | + | chr4.2:12828328-12828347 | None:intergenic | 55.0% | |
ACCGGAGAAGCGAACGTAAC+AGG | + | chr4.2:12828346-12828365 | None:intergenic | 55.0% | |
AGCGAACGTAACAGGGGGAT+TGG | + | chr4.2:12828338-12828357 | None:intergenic | 55.0% | |
CCCCGATTACGGTTTCCCAA+AGG | - | chr4.2:12828248-12828267 | MS.gene08783:CDS | 55.0% | |
CCCTGTTACGTTCGCTTCTC+CGG | - | chr4.2:12828342-12828361 | MS.gene08783:CDS | 55.0% | |
CCGGAGAAGCGAACGTAACA+GGG | + | chr4.2:12828345-12828364 | None:intergenic | 55.0% | |
CGGAAACGGAACCGTAAGTG+AGG | + | chr4.2:12828404-12828423 | None:intergenic | 55.0% | |
CGGAGAAGCGAACGTAACAG+GGG | + | chr4.2:12828344-12828363 | None:intergenic | 55.0% | |
CGTAACAGGGGGATTGGAGA+TGG | + | chr4.2:12828332-12828351 | None:intergenic | 55.0% | |
CTGGCTCCCTGTTACTGGAA+TGG | - | chr4.2:12828458-12828477 | MS.gene08783:CDS | 55.0% | |
GAAGGGTTGTGGCTGTTGCA+TGG | + | chr4.2:12828206-12828225 | None:intergenic | 55.0% | |
GAGCATCTTGGCCTGAATCC+CGG | + | chr4.2:12828433-12828452 | None:intergenic | 55.0% | |
GAGGGTGAAGTAACCGGATG+AGG | + | chr4.2:12828310-12828329 | None:intergenic | 55.0% | |
GATGTCCGATGGAAGGGTTG+TGG | + | chr4.2:12828217-12828236 | None:intergenic | 55.0% | |
GGAACCGTAAGTGAGGGTTC+CGG | + | chr4.2:12828397-12828416 | None:intergenic | 55.0% | |
GGAGAAGCGAACGTAACAGG+GGG | + | chr4.2:12828343-12828362 | None:intergenic | 55.0% | |
GGTTCCGTTTCCGGTGTTTC+CGG | - | chr4.2:12828411-12828430 | MS.gene08783:CDS | 55.0% | |
GTCACCGGAACCCTCACTTA+CGG | - | chr4.2:12828390-12828409 | MS.gene08783:CDS | 55.0% | |
GTCGTGGATGTCCGATGGAA+GGG | + | chr4.2:12828223-12828242 | None:intergenic | 55.0% | |
GTTCCGTTTCCGGTGTTTCC+GGG | - | chr4.2:12828412-12828431 | MS.gene08783:CDS | 55.0% | |
TACTACGACACCCTCGTCAC+CGG | - | chr4.2:12828375-12828394 | MS.gene08783:CDS | 55.0% | |
TCCTACACCCTCTCCTCATC+CGG | - | chr4.2:12828294-12828313 | MS.gene08783:CDS | 55.0% | |
TTCCGGTGTTTCCGGGATTC+AGG | - | chr4.2:12828419-12828438 | MS.gene08783:CDS | 55.0% | |
TTGGGAAACCGTAATCGGGG+AGG | + | chr4.2:12828248-12828267 | None:intergenic | 55.0% | |
AAGTGAGGGTTCCGGTGACG+AGG | + | chr4.2:12828389-12828408 | None:intergenic | 60.0% | |
AGGAGGTCGTGGATGTCCGA+TGG | + | chr4.2:12828228-12828247 | None:intergenic | 60.0% | |
AGTGAGGGTTCCGGTGACGA+GGG | + | chr4.2:12828388-12828407 | None:intergenic | 60.0% | |
CACGACCTCCTCCCCGATTA+CGG | - | chr4.2:12828237-12828256 | MS.gene08783:CDS | 60.0% | |
GGAAACCGTAATCGGGGAGG+AGG | + | chr4.2:12828245-12828264 | None:intergenic | 60.0% | |
GGCCTGAATCCCGGAAACAC+CGG | + | chr4.2:12828424-12828443 | None:intergenic | 60.0% | |
GGTCGTGGATGTCCGATGGA+AGG | + | chr4.2:12828224-12828243 | None:intergenic | 60.0% | |
! | ACCGGATGAGGAGAGGGTGT+AGG | + | chr4.2:12828298-12828317 | None:intergenic | 60.0% |
! | GGATGAGGAGAGGGTGTAGG+AGG | + | chr4.2:12828295-12828314 | None:intergenic | 60.0% |
CGTAATCGGGGAGGAGGTCG+TGG | + | chr4.2:12828239-12828258 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 12828144 | 12828620 | 12828144 | ID=MS.gene08783 |
chr4.2 | mRNA | 12828144 | 12828620 | 12828144 | ID=MS.gene08783.t1;Parent=MS.gene08783 |
chr4.2 | exon | 12828144 | 12828620 | 12828144 | ID=MS.gene08783.t1.exon1;Parent=MS.gene08783.t1 |
chr4.2 | CDS | 12828144 | 12828620 | 12828144 | ID=cds.MS.gene08783.t1;Parent=MS.gene08783.t1 |
Gene Sequence |
Protein sequence |