Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08883.t1 | XP_003606401.1 | 98.7 | 304 | 4 | 0 | 77 | 380 | 83 | 386 | 2.20E-177 | 631.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08883.t1 | G7JPE3 | 98.7 | 304 | 4 | 0 | 77 | 380 | 83 | 386 | 1.6e-177 | 631.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04926 | MS.gene08883 | 0.820013 | 8.58E-53 | -1.69E-46 |
| MS.gene049549 | MS.gene08883 | 0.825774 | 3.90E-54 | -1.69E-46 |
| MS.gene050329 | MS.gene08883 | 0.810818 | 9.54E-51 | -1.69E-46 |
| MS.gene050720 | MS.gene08883 | 0.838114 | 3.49E-57 | -1.69E-46 |
| MS.gene050722 | MS.gene08883 | 0.808711 | 2.71E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene08883 | 0.818226 | 2.19E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene08883 | 0.813303 | 2.74E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene08883 | 0.818304 | 2.10E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene08883 | 0.810307 | 1.23E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene08883 | 0.803943 | 2.74E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene08883 | 0.854332 | 1.32E-61 | -1.69E-46 |
| MS.gene054742 | MS.gene08883 | 0.848255 | 6.89E-60 | -1.69E-46 |
| MS.gene055240 | MS.gene08883 | 0.824246 | 8.96E-54 | -1.69E-46 |
| MS.gene056076 | MS.gene08883 | 0.813201 | 2.89E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene08883 | 0.823408 | 1.41E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene08883 | 0.836115 | 1.13E-56 | -1.69E-46 |
| MS.gene056748 | MS.gene08883 | 0.821533 | 3.84E-53 | -1.69E-46 |
| MS.gene056920 | MS.gene08883 | 0.8281 | 1.08E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene08883 | 0.82932 | 5.50E-55 | -1.69E-46 |
| MS.gene056988 | MS.gene08883 | 0.809599 | 1.75E-50 | -1.69E-46 |
| MS.gene057261 | MS.gene08883 | 0.803648 | 3.15E-49 | -1.69E-46 |
| MS.gene058452 | MS.gene08883 | 0.813833 | 2.10E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene08883 | 0.810515 | 1.11E-50 | -1.69E-46 |
| MS.gene059891 | MS.gene08883 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene059892 | MS.gene08883 | 0.816071 | 6.68E-52 | -1.69E-46 |
| MS.gene059955 | MS.gene08883 | 0.80435 | 2.25E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene08883 | 0.830467 | 2.89E-55 | -1.69E-46 |
| MS.gene061038 | MS.gene08883 | 0.824102 | 9.68E-54 | -1.69E-46 |
| MS.gene061092 | MS.gene08883 | 0.835908 | 1.28E-56 | -1.69E-46 |
| MS.gene061094 | MS.gene08883 | 0.834236 | 3.37E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08883.t1 | MTR_4g059630 | 91.710 | 386 | 26 | 1 | 1 | 380 | 1 | 386 | 0.0 | 650 |
| MS.gene08883.t1 | MTR_4g059670 | 91.176 | 306 | 26 | 1 | 75 | 380 | 91 | 395 | 0.0 | 572 |
| MS.gene08883.t1 | MTR_2g080260 | 47.368 | 285 | 144 | 4 | 99 | 380 | 41 | 322 | 1.32e-97 | 294 |
| MS.gene08883.t1 | MTR_2g080230 | 47.018 | 285 | 145 | 4 | 99 | 380 | 41 | 322 | 8.51e-95 | 287 |
| MS.gene08883.t1 | MTR_8g464300 | 47.407 | 270 | 138 | 3 | 99 | 367 | 41 | 307 | 2.35e-89 | 273 |
| MS.gene08883.t1 | MTR_2g030835 | 43.774 | 265 | 138 | 4 | 108 | 367 | 36 | 294 | 1.77e-76 | 239 |
| MS.gene08883.t1 | MTR_2g021580 | 43.019 | 265 | 140 | 4 | 108 | 367 | 37 | 295 | 7.24e-76 | 238 |
| MS.gene08883.t1 | MTR_2g030825 | 42.379 | 269 | 135 | 4 | 99 | 367 | 311 | 559 | 9.23e-73 | 238 |
| MS.gene08883.t1 | MTR_2g030845 | 42.007 | 269 | 136 | 4 | 99 | 367 | 312 | 560 | 1.83e-71 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08883.t1 | AT5G60520 | 69.355 | 310 | 95 | 0 | 59 | 368 | 19 | 328 | 6.79e-159 | 450 |
| MS.gene08883.t1 | AT5G60530 | 66.667 | 297 | 98 | 1 | 73 | 368 | 133 | 429 | 8.02e-159 | 453 |
| MS.gene08883.t1 | AT4G27400 | 43.151 | 292 | 159 | 5 | 90 | 377 | 28 | 316 | 1.43e-91 | 279 |
| MS.gene08883.t1 | AT5G54370 | 42.857 | 280 | 153 | 4 | 99 | 377 | 36 | 309 | 1.42e-86 | 266 |
| MS.gene08883.t1 | AT1G54890 | 44.444 | 279 | 148 | 5 | 99 | 373 | 42 | 317 | 7.92e-86 | 264 |
| MS.gene08883.t1 | AT3G19430 | 43.158 | 285 | 143 | 6 | 86 | 367 | 281 | 549 | 6.34e-77 | 248 |
| MS.gene08883.t1 | AT3G19430 | 43.158 | 285 | 143 | 6 | 86 | 367 | 258 | 526 | 6.35e-77 | 248 |
Find 93 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTCTTCTTTGGCTTCC+TGG | 0.127198 | 4.2:+44020804 | None:intergenic |
| GAATTCGTCGTCTGAAACTA+TGG | 0.170329 | 4.2:+44019799 | None:intergenic |
| TTGACTCTCTTACAGTAAAA+TGG | 0.170606 | 4.2:-44019637 | MS.gene08883:CDS |
| TTATCTTTCTTGTTCTTCTT+TGG | 0.195002 | 4.2:+44020796 | None:intergenic |
| TAATTTGATGATTCCTCTTT+TGG | 0.202224 | 4.2:+44020928 | None:intergenic |
| AGTGTTAGAGTGACAGTTTC+TGG | 0.235484 | 4.2:-44019515 | MS.gene08883:CDS |
| TTGAAAAGAGGGATGGAGTT+TGG | 0.305290 | 4.2:+44019264 | None:intergenic |
| ATTTATCTTACTTATCTCTA+TGG | 0.323956 | 4.2:-44021103 | MS.gene08883:CDS |
| CAATGAAGTGTGCGTTGATT+TGG | 0.340778 | 4.2:+44019777 | None:intergenic |
| AGAGATAAGTAAGATAAATA+AGG | 0.353305 | 4.2:+44021107 | None:intergenic |
| TATGGCGAAGTTTCCTCCTT+TGG | 0.367101 | 4.2:+44019817 | None:intergenic |
| ATTCCATTGAGTTACTCTAT+TGG | 0.373593 | 4.2:+44019667 | None:intergenic |
| TTGTCTTCTCCTCCCATCAT+TGG | 0.383781 | 4.2:+44019290 | None:intergenic |
| CGTTACCATTACCATTTCCT+TGG | 0.391236 | 4.2:+44021061 | None:intergenic |
| GACATAAGGGTAAGGCCTAT+TGG | 0.392194 | 4.2:-44019479 | MS.gene08883:CDS |
| AATCCTACAGATTCTATTGA+AGG | 0.405188 | 4.2:-44019374 | MS.gene08883:CDS |
| AGTTTCTGGTTTGCTTGAAA+TGG | 0.405957 | 4.2:-44019501 | MS.gene08883:CDS |
| AAGAAGAACAAGAAAGATAA+AGG | 0.413234 | 4.2:-44020793 | MS.gene08883:CDS |
| CTTCATTGGTACTCGGCCTC+AGG | 0.419986 | 4.2:-44019762 | MS.gene08883:CDS |
| GAAGGCAAGGAGAAAGGAAA+AGG | 0.426860 | 4.2:-44021003 | MS.gene08883:CDS |
| GTTTGCTTGAAATGGACATA+AGG | 0.432171 | 4.2:-44019493 | MS.gene08883:CDS |
| CTTGGCTAGTGGAAGGCCTC+TGG | 0.435290 | 4.2:+44019219 | None:intergenic |
| CAAATCAACGCACACTTCAT+TGG | 0.436180 | 4.2:-44019776 | MS.gene08883:CDS |
| TGCTACGATCCTCGCTTTGT+TGG | 0.444194 | 4.2:-44019872 | MS.gene08883:CDS |
| CCTCGCTTTGTTGGTGGAGA+CGG | 0.444632 | 4.2:-44019863 | MS.gene08883:CDS |
| CGGTAACAATGGAAATGGTA+AGG | 0.455538 | 4.2:-44021040 | MS.gene08883:CDS |
| CAACAACATGCAAACTCTGC+AGG | 0.455560 | 4.2:-44019244 | MS.gene08883:CDS |
| AAGGAAGAAGGCAAGGAGAA+AGG | 0.456765 | 4.2:-44021009 | MS.gene08883:CDS |
| TTTGCTTGAAATGGACATAA+GGG | 0.458437 | 4.2:-44019492 | MS.gene08883:CDS |
| AAGCATCATCTGATGGCAAC+TGG | 0.466998 | 4.2:+44019429 | None:intergenic |
| ATTGCTCAAGGCCAAGGAAA+TGG | 0.467146 | 4.2:-44021072 | MS.gene08883:CDS |
| GGTAACGGTAACAATGGAAA+TGG | 0.468560 | 4.2:-44021045 | MS.gene08883:CDS |
| CTACCGATGATGACGCTGAA+TGG | 0.469881 | 4.2:-44019592 | MS.gene08883:CDS |
| GAAAGGAAAAGGAAAAGAGA+AGG | 0.473332 | 4.2:-44020992 | MS.gene08883:CDS |
| CAGTTGCAAACTTTGCCATC+AGG | 0.477219 | 4.2:-44020901 | MS.gene08883:CDS |
| GCAAACTTTGCCATCAGGAC+AGG | 0.479019 | 4.2:-44020896 | MS.gene08883:CDS |
| TACGATCCTCGCTTTGTTGG+TGG | 0.482458 | 4.2:-44019869 | MS.gene08883:CDS |
| AGTTTCCTCCTTTGGCTCCA+TGG | 0.483265 | 4.2:+44019825 | None:intergenic |
| TGACTCTCTTACAGTAAAAT+GGG | 0.484783 | 4.2:-44019636 | MS.gene08883:CDS |
| AATATTGAGCAATGACTCCT+TGG | 0.485386 | 4.2:+44019201 | None:intergenic |
| AGGCGTTGCTATGCCAATGA+TGG | 0.486148 | 4.2:-44019303 | MS.gene08883:CDS |
| GTTTGCATGTTGTTGAAAAG+AGG | 0.489779 | 4.2:+44019252 | None:intergenic |
| ATAGCAACGCCTCTCTTGAC+AGG | 0.501342 | 4.2:+44019314 | None:intergenic |
| AGAGCAAACTGTGATGGTTA+CGG | 0.511380 | 4.2:-44019902 | MS.gene08883:CDS |
| CCAAGATGGCAGGAGGAAAG+TGG | 0.514698 | 4.2:-44021143 | None:intergenic |
| AGAGAGTTCACCAAGATGGC+AGG | 0.515343 | 4.2:-44021153 | None:intergenic |
| GACGCTGAATGGAAGACTAA+TGG | 0.521391 | 4.2:-44019581 | MS.gene08883:CDS |
| AAATGGTAAGGGAAATGATA+AGG | 0.526665 | 4.2:-44021028 | MS.gene08883:CDS |
| TTGACAGGACTAACATAACT+TGG | 0.528654 | 4.2:+44019329 | None:intergenic |
| TTCTACTTCCATGGAGCCAA+AGG | 0.530261 | 4.2:-44019833 | MS.gene08883:CDS |
| AGGAGGAAAGTGGAGCATCT+TGG | 0.533383 | 4.2:-44021133 | MS.gene08883:CDS |
| CAGCCAATAGAGTAACTCAA+TGG | 0.535035 | 4.2:-44019670 | MS.gene08883:CDS |
| GAAGGACTCGCGACTACACA+TGG | 0.541845 | 4.2:-44019739 | MS.gene08883:CDS |
| GCTGCCATTGCTCAAGGCCA+AGG | 0.542712 | 4.2:-44021078 | MS.gene08883:CDS |
| TTTGCATGTTGTTGAAAAGA+GGG | 0.543585 | 4.2:+44019253 | None:intergenic |
| CAAGGCCAAGGAAATGGTAA+TGG | 0.543693 | 4.2:-44021066 | MS.gene08883:CDS |
| AAGGGAAATGATAAGGAAGA+AGG | 0.548679 | 4.2:-44021021 | MS.gene08883:CDS |
| CATGTTGTTGAAAAGAGGGA+TGG | 0.549810 | 4.2:+44019257 | None:intergenic |
| AAATGATAAGGAAGAAGGCA+AGG | 0.550988 | 4.2:-44021016 | MS.gene08883:CDS |
| TGTGAACTTACACTTGCAAG+TGG | 0.553405 | 4.2:+44020738 | None:intergenic |
| AGCGTCATCATCGGTAGGAA+TGG | 0.553954 | 4.2:+44019598 | None:intergenic |
| AATGCTCGCTCCTGTCCTGA+TGG | 0.556099 | 4.2:+44020886 | None:intergenic |
| ATGGAAGCTGCCATTGCTCA+AGG | 0.563232 | 4.2:-44021084 | MS.gene08883:CDS |
| AGCAATGACTCCTTGGCTAG+TGG | 0.564443 | 4.2:+44019208 | None:intergenic |
| GGCGTTGCTATGCCAATGAT+GGG | 0.567693 | 4.2:-44019302 | MS.gene08883:CDS |
| ATTTCCTTGGCCTTGAGCAA+TGG | 0.568400 | 4.2:+44021074 | None:intergenic |
| GGTGTGATGTTCTACTTCCA+TGG | 0.570969 | 4.2:-44019842 | MS.gene08883:CDS |
| GGTAATGGTAACGGTAACAA+TGG | 0.571925 | 4.2:-44021051 | MS.gene08883:CDS |
| TTGGTACTCGGCCTCAGGGA+AGG | 0.575908 | 4.2:-44019757 | MS.gene08883:CDS |
| CTTCCATTCAGCGTCATCAT+CGG | 0.576076 | 4.2:+44019589 | None:intergenic |
| GCAAACTCTGCAGGTTCCAG+AGG | 0.576301 | 4.2:-44019235 | MS.gene08883:CDS |
| CGACGAAAGAGAAGTGATTG+TGG | 0.579560 | 4.2:-44019558 | MS.gene08883:CDS |
| GGTAACAATGGAAATGGTAA+GGG | 0.582315 | 4.2:-44021039 | MS.gene08883:CDS |
| GTCCAGCTGAGTGCAAAACC+AGG | 0.585455 | 4.2:-44020822 | MS.gene08883:CDS |
| GTTAGAAGAGCAAACTGTGA+TGG | 0.591528 | 4.2:-44019908 | MS.gene08883:CDS |
| TTGAAATGGACATAAGGGTA+AGG | 0.592556 | 4.2:-44019487 | MS.gene08883:CDS |
| ACTCCTTCAATAGAATCTGT+AGG | 0.597663 | 4.2:+44019371 | None:intergenic |
| ACGCACACTTCATTGGTACT+CGG | 0.600159 | 4.2:-44019769 | MS.gene08883:CDS |
| CAAGGAAATGGTAATGGTAA+CGG | 0.600503 | 4.2:-44021060 | MS.gene08883:CDS |
| CAGAGGCCTTCCACTAGCCA+AGG | 0.603668 | 4.2:-44019218 | MS.gene08883:CDS |
| TGAGCAAAAGCATCATCTGA+TGG | 0.608641 | 4.2:+44019422 | None:intergenic |
| TTCATTGGTACTCGGCCTCA+GGG | 0.609556 | 4.2:-44019761 | MS.gene08883:CDS |
| ATGACTCCTTGGCTAGTGGA+AGG | 0.614412 | 4.2:+44019212 | None:intergenic |
| TACTTCCATGGAGCCAAAGG+AGG | 0.618849 | 4.2:-44019830 | MS.gene08883:CDS |
| AGGAAAGTGGAGCATCTTGG+TGG | 0.627956 | 4.2:-44021130 | MS.gene08883:CDS |
| CATTCAGCGTCATCATCGGT+AGG | 0.633170 | 4.2:+44019593 | None:intergenic |
| TATGTTAGTCCTGTCAAGAG+AGG | 0.633793 | 4.2:-44019323 | MS.gene08883:CDS |
| GAGTTCACCAAGATGGCAGG+AGG | 0.649508 | 4.2:-44021150 | None:intergenic |
| TCTCTTACAGTAAAATGGGA+CGG | 0.652194 | 4.2:-44019632 | MS.gene08883:CDS |
| CCGTCTCCACCAACAAAGCG+AGG | 0.670633 | 4.2:+44019863 | None:intergenic |
| GTTGCTATGCCAATGATGGG+AGG | 0.674841 | 4.2:-44019299 | MS.gene08883:CDS |
| AAGGACTCGCGACTACACAT+GGG | 0.715742 | 4.2:-44019738 | MS.gene08883:CDS |
| TAGTCGCGAGTCCTTCCCTG+AGG | 0.736450 | 4.2:+44019746 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTAAATACTATATATTT+AGG | - | chr4.2:44020141-44020160 | MS.gene08883:intron | 10.0% |
| !! | CTTTAAATACTATATATTTA+GGG | - | chr4.2:44020142-44020161 | MS.gene08883:intron | 10.0% |
| !!! | TTTTAGTATAATATTCAATT+TGG | - | chr4.2:44019639-44019658 | MS.gene08883:CDS | 10.0% |
| !! | ATGCTTAAAAAAAATCATTT+AGG | + | chr4.2:44020073-44020092 | None:intergenic | 15.0% |
| !! | AGAGATAAGTAAGATAAATA+AGG | + | chr4.2:44019233-44019252 | None:intergenic | 20.0% |
| !! | ATACATGCAACATTTAATAA+GGG | - | chr4.2:44019911-44019930 | MS.gene08883:intron | 20.0% |
| !! | ATTTATCTTACTTATCTCTA+TGG | - | chr4.2:44019234-44019253 | MS.gene08883:CDS | 20.0% |
| !! | TATACATGCAACATTTAATA+AGG | - | chr4.2:44019910-44019929 | MS.gene08883:CDS | 20.0% |
| !! | TGCCTAAATGAATTATATTT+GGG | + | chr4.2:44019961-44019980 | None:intergenic | 20.0% |
| ! | AAGAAGAACAAGAAAGATAA+AGG | - | chr4.2:44019544-44019563 | MS.gene08883:CDS | 25.0% |
| ! | ACAATCACACAACTTAAAAA+AGG | - | chr4.2:44019980-44019999 | MS.gene08883:intron | 25.0% |
| ! | ACCCCAAATATAATTCATTT+AGG | - | chr4.2:44019956-44019975 | MS.gene08883:intron | 25.0% |
| ! | CTTAGTCAAATAGTTCATAT+TGG | + | chr4.2:44019695-44019714 | None:intergenic | 25.0% |
| ! | GCCTAAATGAATTATATTTG+GGG | + | chr4.2:44019960-44019979 | None:intergenic | 25.0% |
| ! | GTGCCTAAATGAATTATATT+TGG | + | chr4.2:44019962-44019981 | None:intergenic | 25.0% |
| ! | TATTGGAGAAAAAGAAAACA+AGG | - | chr4.2:44020875-44020894 | MS.gene08883:CDS | 25.0% |
| ! | TTATCTTTCTTGTTCTTCTT+TGG | + | chr4.2:44019544-44019563 | None:intergenic | 25.0% |
| ! | TTCCTTACTATAGTAAATTC+AGG | - | chr4.2:44019819-44019838 | MS.gene08883:CDS | 25.0% |
| ! | TTGCGTCCAAAATATAAAAT+TGG | + | chr4.2:44019735-44019754 | None:intergenic | 25.0% |
| ! | TTGTCTATGATAAAGTCAAA+AGG | - | chr4.2:44019844-44019863 | MS.gene08883:CDS | 25.0% |
| !! | AAGAACTAAGAAGCATAAAA+TGG | + | chr4.2:44019887-44019906 | None:intergenic | 25.0% |
| !! | CATGCTCCAATTTTATATTT+TGG | - | chr4.2:44019726-44019745 | MS.gene08883:CDS | 25.0% |
| !! | TTGTTTTCTTTTTCTCCAAT+AGG | + | chr4.2:44020876-44020895 | None:intergenic | 25.0% |
| !!! | TAATTTGATGATTCCTCTTT+TGG | + | chr4.2:44019412-44019431 | None:intergenic | 25.0% |
| AAATGGTAAGGGAAATGATA+AGG | - | chr4.2:44019309-44019328 | MS.gene08883:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | - | chr4.2:44020963-44020982 | MS.gene08883:CDS | 30.0% | |
| ACATTTAATAAGGGAATGAG+AGG | - | chr4.2:44019920-44019939 | MS.gene08883:intron | 30.0% | |
| ATATAAAATTGGAGCATGAG+TGG | + | chr4.2:44019724-44019743 | None:intergenic | 30.0% | |
| ATATGTATATGCAGTTGAGT+TGG | + | chr4.2:44020356-44020375 | None:intergenic | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | + | chr4.2:44020673-44020692 | None:intergenic | 30.0% | |
| GACCTGAATTTACTATAGTA+AGG | + | chr4.2:44019824-44019843 | None:intergenic | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | - | chr4.2:44020701-44020720 | MS.gene08883:intron | 30.0% | |
| TTATTACCTGCAATCATTCT+CGG | + | chr4.2:44020116-44020135 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | - | chr4.2:44020700-44020719 | MS.gene08883:intron | 30.0% | |
| TTTGCATGTTGTTGAAAAGA+GGG | + | chr4.2:44021087-44021106 | None:intergenic | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | - | chr4.2:44020845-44020864 | MS.gene08883:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | - | chr4.2:44020972-44020991 | MS.gene08883:CDS | 30.0% |
| ! | TGTGTAAAAACGTTTTACAG+CGG | - | chr4.2:44020266-44020285 | MS.gene08883:intron | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | - | chr4.2:44020985-44021004 | MS.gene08883:CDS | 30.0% |
| AAAAAAGAAGGCTCCAAAAG+AGG | - | chr4.2:44019396-44019415 | MS.gene08883:CDS | 35.0% | |
| AAATGATAAGGAAGAAGGCA+AGG | - | chr4.2:44019321-44019340 | MS.gene08883:CDS | 35.0% | |
| AAGGGAAATGATAAGGAAGA+AGG | - | chr4.2:44019316-44019335 | MS.gene08883:CDS | 35.0% | |
| AATATTGAGCAATGACTCCT+TGG | + | chr4.2:44021139-44021158 | None:intergenic | 35.0% | |
| ACTCCTTCAATAGAATCTGT+AGG | + | chr4.2:44020969-44020988 | None:intergenic | 35.0% | |
| GAAAGGAAAAGGAAAAGAGA+AGG | - | chr4.2:44019345-44019364 | MS.gene08883:CDS | 35.0% | |
| GGTAACAATGGAAATGGTAA+GGG | - | chr4.2:44019298-44019317 | MS.gene08883:CDS | 35.0% | |
| GTTTGCATGTTGTTGAAAAG+AGG | + | chr4.2:44021088-44021107 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | - | chr4.2:44020844-44020863 | MS.gene08883:CDS | 35.0% | |
| TCTCTTACAGTAAAATGGGA+CGG | - | chr4.2:44020705-44020724 | MS.gene08883:intron | 35.0% | |
| TTCTCGGAGAAATTCTTCTA+TGG | + | chr4.2:44020100-44020119 | None:intergenic | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | - | chr4.2:44020850-44020869 | MS.gene08883:CDS | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | + | chr4.2:44021011-44021030 | None:intergenic | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | - | chr4.2:44020920-44020939 | MS.gene08883:CDS | 35.0% |
| !! | AGTTTCTGGTTTGCTTGAAA+TGG | - | chr4.2:44020836-44020855 | MS.gene08883:CDS | 35.0% |
| !! | CAAGGAAATGGTAATGGTAA+CGG | - | chr4.2:44019277-44019296 | MS.gene08883:CDS | 35.0% |
| !!! | TCTTTTGGAGCCTTCTTTTT+TGG | + | chr4.2:44019397-44019416 | None:intergenic | 35.0% |
| !!! | TTTGGAGCTTTCTCCTTTTT+TGG | + | chr4.2:44019379-44019398 | None:intergenic | 35.0% |
| AGAGCAAACTGTGATGGTTA+CGG | - | chr4.2:44020435-44020454 | MS.gene08883:intron | 40.0% | |
| AGTGTTAGAGTGACAGTTTC+TGG | - | chr4.2:44020822-44020841 | MS.gene08883:CDS | 40.0% | |
| ATTTCTCCGAGAATGATTGC+AGG | - | chr4.2:44020107-44020126 | MS.gene08883:intron | 40.0% | |
| CAAATCAACGCACACTTCAT+TGG | - | chr4.2:44020561-44020580 | MS.gene08883:intron | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | - | chr4.2:44020667-44020686 | MS.gene08883:intron | 40.0% | |
| CATGTTGTTGAAAAGAGGGA+TGG | + | chr4.2:44021083-44021102 | None:intergenic | 40.0% | |
| CGGTAACAATGGAAATGGTA+AGG | - | chr4.2:44019297-44019316 | MS.gene08883:CDS | 40.0% | |
| CGTTACCATTACCATTTCCT+TGG | + | chr4.2:44019279-44019298 | None:intergenic | 40.0% | |
| GAAGGAGAAAGCTCCAAAAA+AGG | - | chr4.2:44019363-44019382 | MS.gene08883:CDS | 40.0% | |
| GGAGAAAGCTCCAAAAAAGA+AGG | - | chr4.2:44019384-44019403 | MS.gene08883:CDS | 40.0% | |
| GTCATCCAATCTTAACCTGA+CGG | - | chr4.2:44019764-44019783 | MS.gene08883:CDS | 40.0% | |
| GTTAGAAGAGCAAACTGTGA+TGG | - | chr4.2:44020429-44020448 | MS.gene08883:intron | 40.0% | |
| TATGTTAGTCCTGTCAAGAG+AGG | - | chr4.2:44021014-44021033 | MS.gene08883:CDS | 40.0% | |
| TCAACAGTCACTCATCTTCA+TGG | + | chr4.2:44020190-44020209 | None:intergenic | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | + | chr4.2:44019602-44019621 | None:intergenic | 40.0% | |
| TTGAAAAGAGGGATGGAGTT+TGG | + | chr4.2:44021076-44021095 | None:intergenic | 40.0% | |
| ! | GAATTCGTCGTCTGAAACTA+TGG | + | chr4.2:44020541-44020560 | None:intergenic | 40.0% |
| ! | GGTAACGGTAACAATGGAAA+TGG | - | chr4.2:44019292-44019311 | MS.gene08883:CDS | 40.0% |
| !! | CAATGAAGTGTGCGTTGATT+TGG | + | chr4.2:44020563-44020582 | None:intergenic | 40.0% |
| !! | GGTAATGGTAACGGTAACAA+TGG | - | chr4.2:44019286-44019305 | MS.gene08883:CDS | 40.0% |
| !! | TGAGCAAAAGCATCATCTGA+TGG | + | chr4.2:44020918-44020937 | None:intergenic | 40.0% |
| AAGCATCATCTGATGGCAAC+TGG | + | chr4.2:44020911-44020930 | None:intergenic | 45.0% | |
| AAGGAAGAAGGCAAGGAGAA+AGG | - | chr4.2:44019328-44019347 | MS.gene08883:CDS | 45.0% | |
| ACGCACACTTCATTGGTACT+CGG | - | chr4.2:44020568-44020587 | MS.gene08883:intron | 45.0% | |
| ACTACGTGATTGCATGAACG+CGG | + | chr4.2:44019670-44019689 | None:intergenic | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | - | chr4.2:44019265-44019284 | MS.gene08883:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | - | chr4.2:44021093-44021112 | MS.gene08883:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | - | chr4.2:44019271-44019290 | MS.gene08883:CDS | 45.0% | |
| CAGTTGCAAACTTTGCCATC+AGG | - | chr4.2:44019436-44019455 | MS.gene08883:CDS | 45.0% | |
| CGACGAAAGAGAAGTGATTG+TGG | - | chr4.2:44020779-44020798 | MS.gene08883:CDS | 45.0% | |
| CTTCCATTCAGCGTCATCAT+CGG | + | chr4.2:44020751-44020770 | None:intergenic | 45.0% | |
| GAAGGCAAGGAGAAAGGAAA+AGG | - | chr4.2:44019334-44019353 | MS.gene08883:CDS | 45.0% | |
| GACATAAGGGTAAGGCCTAT+TGG | - | chr4.2:44020858-44020877 | MS.gene08883:CDS | 45.0% | |
| GACGCTGAATGGAAGACTAA+TGG | - | chr4.2:44020756-44020775 | MS.gene08883:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | - | chr4.2:44020495-44020514 | MS.gene08883:intron | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | + | chr4.2:44020523-44020542 | None:intergenic | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | - | chr4.2:44020504-44020523 | MS.gene08883:intron | 45.0% | |
| TTGTCTTCTCCTCCCATCAT+TGG | + | chr4.2:44021050-44021069 | None:intergenic | 45.0% | |
| ! | CTTGTTCTTCTTTGGCTTCC+TGG | + | chr4.2:44019536-44019555 | None:intergenic | 45.0% |
| !! | ATTTCCTTGGCCTTGAGCAA+TGG | + | chr4.2:44019266-44019285 | None:intergenic | 45.0% |
| AAGGACTCGCGACTACACAT+GGG | - | chr4.2:44020599-44020618 | MS.gene08883:intron | 50.0% | |
| AGCAATGACTCCTTGGCTAG+TGG | + | chr4.2:44021132-44021151 | None:intergenic | 50.0% | |
| AGCGTCATCATCGGTAGGAA+TGG | + | chr4.2:44020742-44020761 | None:intergenic | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | + | chr4.2:44021026-44021045 | None:intergenic | 50.0% | |
| ATGACTCCTTGGCTAGTGGA+AGG | + | chr4.2:44021128-44021147 | None:intergenic | 50.0% | |
| ATGGAAGCTGCCATTGCTCA+AGG | - | chr4.2:44019253-44019272 | MS.gene08883:CDS | 50.0% | |
| CATTCAGCGTCATCATCGGT+AGG | + | chr4.2:44020747-44020766 | None:intergenic | 50.0% | |
| CTCAGCCGTCAGGTTAAGAT+TGG | + | chr4.2:44019772-44019791 | None:intergenic | 50.0% | |
| CTTAACCTGACGGCTGAGAT+CGG | - | chr4.2:44019774-44019793 | MS.gene08883:CDS | 50.0% | |
| GCAAACTTTGCCATCAGGAC+AGG | - | chr4.2:44019441-44019460 | MS.gene08883:CDS | 50.0% | |
| GGCGTTGCTATGCCAATGAT+GGG | - | chr4.2:44021035-44021054 | MS.gene08883:CDS | 50.0% | |
| TACTTCCATGGAGCCAAAGG+AGG | - | chr4.2:44020507-44020526 | MS.gene08883:intron | 50.0% | |
| TGCTACGATCCTCGCTTTGT+TGG | - | chr4.2:44020465-44020484 | MS.gene08883:intron | 50.0% | |
| TTAACCTGACGGCTGAGATC+GGG | - | chr4.2:44019775-44019794 | MS.gene08883:CDS | 50.0% | |
| TTCATTGGTACTCGGCCTCA+GGG | - | chr4.2:44020576-44020595 | MS.gene08883:intron | 50.0% | |
| ! | AGGAAAGTGGAGCATCTTGG+TGG | - | chr4.2:44019207-44019226 | MS.gene08883:CDS | 50.0% |
| ! | AGGAGGAAAGTGGAGCATCT+TGG | - | chr4.2:44019204-44019223 | MS.gene08883:CDS | 50.0% |
| ! | AGGCGTTGCTATGCCAATGA+TGG | - | chr4.2:44021034-44021053 | MS.gene08883:CDS | 50.0% |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | + | chr4.2:44020515-44020534 | None:intergenic | 50.0% |
| ! | CTACCGATGATGACGCTGAA+TGG | - | chr4.2:44020745-44020764 | MS.gene08883:intron | 50.0% |
| ! | GTTGCTATGCCAATGATGGG+AGG | - | chr4.2:44021038-44021057 | MS.gene08883:CDS | 50.0% |
| ! | TACGATCCTCGCTTTGTTGG+TGG | - | chr4.2:44020468-44020487 | MS.gene08883:intron | 50.0% |
| !!! | TTCCTGGTTTTGCACTCAGC+TGG | + | chr4.2:44019520-44019539 | None:intergenic | 50.0% |
| AATGCTCGCTCCTGTCCTGA+TGG | + | chr4.2:44019454-44019473 | None:intergenic | 55.0% | |
| CTTCATTGGTACTCGGCCTC+AGG | - | chr4.2:44020575-44020594 | MS.gene08883:intron | 55.0% | |
| GAAGGACTCGCGACTACACA+TGG | - | chr4.2:44020598-44020617 | MS.gene08883:intron | 55.0% | |
| GCAAACTCTGCAGGTTCCAG+AGG | - | chr4.2:44021102-44021121 | MS.gene08883:CDS | 55.0% | |
| GTCCAGCTGAGTGCAAAACC+AGG | - | chr4.2:44019515-44019534 | MS.gene08883:CDS | 55.0% | |
| ! | CCTCGCTTTGTTGGTGGAGA+CGG | - | chr4.2:44020474-44020493 | MS.gene08883:intron | 55.0% |
| CAGAGGCCTTCCACTAGCCA+AGG | - | chr4.2:44021119-44021138 | MS.gene08883:CDS | 60.0% | |
| CCGTCTCCACCAACAAAGCG+AGG | + | chr4.2:44020477-44020496 | None:intergenic | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | + | chr4.2:44021121-44021140 | None:intergenic | 60.0% | |
| GCTGCCATTGCTCAAGGCCA+AGG | - | chr4.2:44019259-44019278 | MS.gene08883:CDS | 60.0% | |
| TAGTCGCGAGTCCTTCCCTG+AGG | + | chr4.2:44020594-44020613 | None:intergenic | 60.0% | |
| TTGGTACTCGGCCTCAGGGA+AGG | - | chr4.2:44020580-44020599 | MS.gene08883:intron | 60.0% | |
| GTCACCCGATCTCAGCCGTC+AGG | + | chr4.2:44019782-44019801 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 44019199 | 44021160 | 44019199 | ID=MS.gene08883 |
| chr4.2 | mRNA | 44019199 | 44021160 | 44019199 | ID=MS.gene08883.t1;Parent=MS.gene08883 |
| chr4.2 | exon | 44020749 | 44021160 | 44020749 | ID=MS.gene08883.t1.exon1;Parent=MS.gene08883.t1 |
| chr4.2 | CDS | 44020749 | 44021160 | 44020749 | ID=cds.MS.gene08883.t1;Parent=MS.gene08883.t1 |
| chr4.2 | exon | 44019199 | 44019929 | 44019199 | ID=MS.gene08883.t1.exon2;Parent=MS.gene08883.t1 |
| chr4.2 | CDS | 44019199 | 44019929 | 44019199 | ID=cds.MS.gene08883.t1;Parent=MS.gene08883.t1 |
| Gene Sequence |
| Protein sequence |
