Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09566.t1 | XP_003611634.1 | 97.4 | 271 | 7 | 0 | 1 | 271 | 1 | 271 | 1.90E-149 | 538.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09566.t1 | Q9SZU7 | 77.2 | 268 | 61 | 0 | 1 | 268 | 1 | 268 | 8.4e-122 | 438.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09566.t1 | G7K3X2 | 97.4 | 271 | 7 | 0 | 1 | 271 | 1 | 271 | 1.4e-149 | 538.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene09566 | 0.800209 | 1.60E-48 | -1.69E-46 |
| MS.gene050499 | MS.gene09566 | 0.808443 | 3.09E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene09566 | 0.800383 | 1.48E-48 | -1.69E-46 |
| MS.gene052318 | MS.gene09566 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene09566 | 0.809372 | 1.95E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene09566 | 0.838602 | 2.61E-57 | -1.69E-46 |
| MS.gene053480 | MS.gene09566 | 0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene09566 | 0.801849 | 7.41E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene09566 | 0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene09566 | 0.804706 | 1.90E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene09566 | 0.827735 | 1.33E-54 | -1.69E-46 |
| MS.gene054486 | MS.gene09566 | 0.826531 | 2.58E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene09566 | 0.826376 | 2.81E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene09566 | 0.807505 | 4.89E-50 | -1.69E-46 |
| MS.gene055486 | MS.gene09566 | 0.805947 | 1.04E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene09566 | 0.81254 | 4.03E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene09566 | 0.809719 | 1.65E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene09566 | 0.830799 | 2.40E-55 | -1.69E-46 |
| MS.gene055911 | MS.gene09566 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene09566 | 0.801557 | 8.51E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene09566 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene09566 | 0.800214 | 1.60E-48 | -1.69E-46 |
| MS.gene059305 | MS.gene09566 | 0.819013 | 1.45E-52 | -1.69E-46 |
| MS.gene059367 | MS.gene09566 | 0.811098 | 8.30E-51 | -1.69E-46 |
| MS.gene059368 | MS.gene09566 | 0.815461 | 9.13E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene09566 | 0.843804 | 1.12E-58 | -1.69E-46 |
| MS.gene060372 | MS.gene09566 | 0.819315 | 1.24E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene09566 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene09566 | 0.80022 | 1.60E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09566.t1 | MTR_5g016150 | 97.417 | 271 | 7 | 0 | 1 | 271 | 1 | 271 | 0.0 | 554 |
| MS.gene09566.t1 | MTR_4g095310 | 79.104 | 268 | 56 | 0 | 1 | 268 | 1 | 268 | 8.24e-167 | 463 |
| MS.gene09566.t1 | MTR_1g018320 | 57.028 | 249 | 105 | 2 | 6 | 253 | 8 | 255 | 7.49e-107 | 311 |
| MS.gene09566.t1 | MTR_3g045440 | 39.184 | 245 | 147 | 2 | 9 | 252 | 13 | 256 | 3.50e-67 | 210 |
| MS.gene09566.t1 | MTR_6g086560 | 40.157 | 254 | 149 | 3 | 9 | 260 | 22 | 274 | 1.82e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09566.t1 | AT4G37470 | 77.239 | 268 | 61 | 0 | 1 | 268 | 1 | 268 | 4.06e-159 | 444 |
| MS.gene09566.t1 | AT3G03990 | 58.468 | 248 | 102 | 1 | 6 | 253 | 8 | 254 | 1.64e-107 | 313 |
| MS.gene09566.t1 | AT3G24420 | 42.742 | 248 | 139 | 3 | 7 | 252 | 13 | 259 | 2.59e-75 | 231 |
Find 65 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAACTTGTCATGGTTTC+CGG | 0.180279 | 5.2:+7787012 | MS.gene09566:CDS |
| CAGCGATAGCGTTGAATAAT+TGG | 0.189658 | 5.2:-7787710 | None:intergenic |
| TTATGATTTACTTGCTATTT+TGG | 0.190068 | 5.2:+7786897 | MS.gene09566:CDS |
| CGGAAACCATGACAAGTTTA+AGG | 0.259764 | 5.2:-7787011 | None:intergenic |
| CTCTCAGAATCAAAGTATTC+AGG | 0.261092 | 5.2:-7786850 | None:intergenic |
| ATAGTTCTAGCTCATGGATT+TGG | 0.302677 | 5.2:+7786733 | MS.gene09566:CDS |
| CTCACCAGATATTGTTATTC+CGG | 0.306476 | 5.2:+7788043 | MS.gene09566:CDS |
| CGCTCCACTGGCTGTGGGTG+GGG | 0.319640 | 5.2:+7787761 | MS.gene09566:CDS |
| AATTACAAAGCATGGTGTTA+TGG | 0.329086 | 5.2:+7787735 | MS.gene09566:CDS |
| GAGAGACATTCAAGCTTAGA+AGG | 0.335053 | 5.2:+7786868 | MS.gene09566:CDS |
| TACTAATTACCTTGGTGAAC+CGG | 0.348114 | 5.2:-7787031 | None:intergenic |
| CATTCTGTTTCTGCAATGAT+TGG | 0.356191 | 5.2:+7786955 | MS.gene09566:CDS |
| ACTGGCTGTGGGTGGGGACA+TGG | 0.358536 | 5.2:+7787767 | MS.gene09566:CDS |
| GGCGGTTCCGGTGATGGTTT+CGG | 0.364938 | 5.2:+7787944 | MS.gene09566:CDS |
| TGAGAAAGATATGGCGGTTC+CGG | 0.374023 | 5.2:+7787932 | MS.gene09566:CDS |
| ATTGAATCTTGCGTATTTGT+TGG | 0.380353 | 5.2:+7786931 | MS.gene09566:CDS |
| AACACCGGAATAACAATATC+TGG | 0.403561 | 5.2:-7788047 | None:intergenic |
| TTGAACGATGTGAATTACTT+TGG | 0.403798 | 5.2:+7787663 | MS.gene09566:CDS |
| TCGCTCCACTGGCTGTGGGT+GGG | 0.418335 | 5.2:+7787760 | MS.gene09566:CDS |
| TGGATTCGCTCCACTGGCTG+TGG | 0.437225 | 5.2:+7787755 | MS.gene09566:CDS |
| CATGGATTCAGTGGCAGTAC+AGG | 0.447432 | 5.2:+7787785 | MS.gene09566:CDS |
| CAAAGTGTTTCCACACAGAT+TGG | 0.448178 | 5.2:-7786762 | None:intergenic |
| TTCGCTCCACTGGCTGTGGG+TGG | 0.454426 | 5.2:+7787759 | MS.gene09566:CDS |
| GTTGTCCATCACTATGTTGT+GGG | 0.463810 | 5.2:+7788458 | MS.gene09566:CDS |
| CGAAAATCATCAACAAGATA+AGG | 0.479354 | 5.2:-7786787 | None:intergenic |
| AGATATGGCGGTTCCGGTGA+TGG | 0.489079 | 5.2:+7787938 | MS.gene09566:CDS |
| ATCAAAGTATTCAGGGTTAG+TGG | 0.490058 | 5.2:-7786842 | None:intergenic |
| TATACAAGCTGAGAAAGATA+TGG | 0.495978 | 5.2:+7787923 | MS.gene09566:CDS |
| GAGTATCTTCACCAACACTT+AGG | 0.503482 | 5.2:+7787966 | MS.gene09566:CDS |
| CGTTGTCCATCACTATGTTG+TGG | 0.509568 | 5.2:+7788457 | MS.gene09566:CDS |
| GTGTTATGGATTCGCTCCAC+TGG | 0.516025 | 5.2:+7787749 | MS.gene09566:CDS |
| TCTCAGAATCAAAGTATTCA+GGG | 0.516412 | 5.2:-7786849 | None:intergenic |
| AGGTACATAGTTCTAGCTCA+TGG | 0.516768 | 5.2:+7786727 | MS.gene09566:CDS |
| AACGATGTGAATTACTTTGG+AGG | 0.518896 | 5.2:+7787666 | MS.gene09566:CDS |
| ACAAGTTTAAGGAAAAGATC+AGG | 0.522449 | 5.2:-7787000 | None:intergenic |
| GACACTATTAGAGCTATGTC+TGG | 0.532117 | 5.2:-7787837 | None:intergenic |
| TCGCTGAAAATTACAAAGCA+TGG | 0.559131 | 5.2:+7787727 | MS.gene09566:CDS |
| TGTTGTTCTATATGATAACA+TGG | 0.566458 | 5.2:+7786810 | MS.gene09566:CDS |
| GGATTCGCTCCACTGGCTGT+GGG | 0.566939 | 5.2:+7787756 | MS.gene09566:CDS |
| ATGTCCCCACCCACAGCCAG+TGG | 0.567376 | 5.2:-7787765 | None:intergenic |
| CTATATGATAACATGGGTGC+TGG | 0.576349 | 5.2:+7786817 | MS.gene09566:CDS |
| GTCGAACATTGTTCAACATG+AGG | 0.582241 | 5.2:+7787814 | MS.gene09566:CDS |
| AGAATGACAGTGGGAATCGA+AGG | 0.587484 | 5.2:+7788433 | MS.gene09566:intron |
| AGGTGGTCAGTCCATTGTTG+AGG | 0.589895 | 5.2:+7787986 | MS.gene09566:CDS |
| TGAATGTGTTTAAGCAACAC+CGG | 0.601873 | 5.2:-7788062 | None:intergenic |
| GGGTGGGGACATGGATTCAG+TGG | 0.603042 | 5.2:+7787776 | MS.gene09566:CDS |
| ACATCCCCACAACATAGTGA+TGG | 0.607855 | 5.2:-7788463 | None:intergenic |
| TATCTTCACCAACACTTAGG+TGG | 0.616011 | 5.2:+7787969 | MS.gene09566:CDS |
| ATAACAAGTATTTACCTCGT+GGG | 0.628025 | 5.2:-7788098 | None:intergenic |
| AGTCTGCATGACCTCAACAA+TGG | 0.633137 | 5.2:-7787997 | None:intergenic |
| TATGACAAGGCACAGTAACA+AGG | 0.637592 | 5.2:-7787899 | None:intergenic |
| AGATACTCCGAAACCATCAC+CGG | 0.643577 | 5.2:-7787951 | None:intergenic |
| GTTGAGGTCATGCAGACTGA+TGG | 0.648337 | 5.2:+7788002 | MS.gene09566:CDS |
| ACATAGCTCTAATAGTGTCA+CGG | 0.660027 | 5.2:+7787841 | MS.gene09566:CDS |
| TCATGGTTTCCGGTTCACCA+AGG | 0.661388 | 5.2:+7787022 | MS.gene09566:CDS |
| TGGTATGGAAGAATGACAGT+GGG | 0.663006 | 5.2:+7788424 | MS.gene09566:intron |
| TTGTCCATCACTATGTTGTG+GGG | 0.682777 | 5.2:+7788459 | MS.gene09566:CDS |
| AACTTAATATTGAGCCCACG+AGG | 0.689184 | 5.2:+7788084 | MS.gene09566:CDS |
| GTGGTATGGAAGAATGACAG+TGG | 0.691524 | 5.2:+7788423 | MS.gene09566:intron |
| ACAAGCTGAGAAAGATATGG+CGG | 0.694733 | 5.2:+7787926 | MS.gene09566:CDS |
| TCAGCTTGTATAATATGACA+AGG | 0.695896 | 5.2:-7787912 | None:intergenic |
| TGGACTGACCACCTAAGTGT+TGG | 0.706295 | 5.2:-7787977 | None:intergenic |
| TTGGAACAGACCAATCTGTG+TGG | 0.709650 | 5.2:+7786752 | MS.gene09566:CDS |
| GTTGTTCTATATGATAACAT+GGG | 0.717956 | 5.2:+7786811 | MS.gene09566:CDS |
| ATATCTGGTGAGCTTAACTG+CGG | 0.718673 | 5.2:-7788032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTAACATTGTTTAA+TGG | + | chr5.2:7787080-7787099 | MS.gene09566:intron | 15.0% |
| !! | AATATGAAATTTGATATAGT+TGG | + | chr5.2:7787471-7787490 | MS.gene09566:intron | 15.0% |
| !! | ATAATTGAATAGAATAAAAC+AGG | - | chr5.2:7788372-7788391 | None:intergenic | 15.0% |
| !! | ATATCAAATTTCATATTACT+AGG | - | chr5.2:7787468-7787487 | None:intergenic | 15.0% |
| !! | TAATTGAATAGAATAAAACA+GGG | - | chr5.2:7788371-7788390 | None:intergenic | 15.0% |
| !! | TATCAAATTTCATATTACTA+GGG | - | chr5.2:7787467-7787486 | None:intergenic | 15.0% |
| !! | AAAAACATAAAACATCTCAA+TGG | - | chr5.2:7787418-7787437 | None:intergenic | 20.0% |
| !! | AAATAATCAAGAGAAATGTA+AGG | - | chr5.2:7787291-7787310 | None:intergenic | 20.0% |
| !! | AACCTAGGTATAAAAAAAAA+AGG | - | chr5.2:7787234-7787253 | None:intergenic | 20.0% |
| !! | AATAATCAAGAGAAATGTAA+GGG | - | chr5.2:7787290-7787309 | None:intergenic | 20.0% |
| !! | ATAAAACTTACTAATTACCT+TGG | - | chr5.2:7787042-7787061 | None:intergenic | 20.0% |
| !! | TGAACAATAAACACAAAATT+TGG | + | chr5.2:7787112-7787131 | MS.gene09566:intron | 20.0% |
| !! | TTATTATTGTTAAGCAACTT+AGG | - | chr5.2:7787540-7787559 | None:intergenic | 20.0% |
| !!! | AGATTTTAAAAAAGGGAAAA+TGG | + | chr5.2:7787180-7787199 | MS.gene09566:intron | 20.0% |
| !!! | TACATTTCTCTTGATTATTT+TGG | + | chr5.2:7787291-7787310 | MS.gene09566:intron | 20.0% |
| !!! | TCAAATCTTAATCACAATTT+TGG | - | chr5.2:7788134-7788153 | None:intergenic | 20.0% |
| !!! | TTATGATTTACTTGCTATTT+TGG | + | chr5.2:7786897-7786916 | MS.gene09566:CDS | 20.0% |
| !!! | TTTAAAACCTTATAGTTGAT+TGG | + | chr5.2:7788306-7788325 | MS.gene09566:intron | 20.0% |
| !!! | TTTTAGACATAGTTTGAATT+TGG | + | chr5.2:7787349-7787368 | MS.gene09566:intron | 20.0% |
| ! | AATATAATGTTGTGACGTAA+CGG | - | chr5.2:7788266-7788285 | None:intergenic | 25.0% |
| ! | AATGATATCTAATTGAACCT+AGG | - | chr5.2:7787249-7787268 | None:intergenic | 25.0% |
| ! | GTTGTTCTATATGATAACAT+GGG | + | chr5.2:7786811-7786830 | MS.gene09566:CDS | 25.0% |
| ! | GTTTGTTTGTGATTTAATTG+TGG | + | chr5.2:7788404-7788423 | MS.gene09566:intron | 25.0% |
| ! | TCGACTATAAGTATATAGTT+TGG | + | chr5.2:7787316-7787335 | MS.gene09566:intron | 25.0% |
| ! | TGTTGTTCTATATGATAACA+TGG | + | chr5.2:7786810-7786829 | MS.gene09566:CDS | 25.0% |
| ! | TTTGTGATTTAATTGTGGTA+TGG | + | chr5.2:7788409-7788428 | MS.gene09566:intron | 25.0% |
| !! | ATTTGACTTAGTCATAGTTA+GGG | + | chr5.2:7788148-7788167 | MS.gene09566:intron | 25.0% |
| !! | TTTTATATGTGATTGTGACA+TGG | + | chr5.2:7787615-7787634 | MS.gene09566:intron | 25.0% |
| !!! | AGGAGTAACAATATTTTAAG+TGG | - | chr5.2:7787214-7787233 | None:intergenic | 25.0% |
| !!! | CTCCTTTTTTTTTTATACCT+AGG | + | chr5.2:7787229-7787248 | MS.gene09566:intron | 25.0% |
| !!! | GTTTATTTTCTCTTTGAGTT+AGG | + | chr5.2:7787637-7787656 | MS.gene09566:intron | 25.0% |
| AATAACAAGTATTTACCTCG+TGG | - | chr5.2:7788102-7788121 | None:intergenic | 30.0% | |
| ACAAGTTTAAGGAAAAGATC+AGG | - | chr5.2:7787003-7787022 | None:intergenic | 30.0% | |
| ATAACAAGTATTTACCTCGT+GGG | - | chr5.2:7788101-7788120 | None:intergenic | 30.0% | |
| ATTGAATCTTGCGTATTTGT+TGG | + | chr5.2:7786931-7786950 | MS.gene09566:CDS | 30.0% | |
| CAATCAATTCAACTTTAGCT+GGG | + | chr5.2:7787379-7787398 | MS.gene09566:intron | 30.0% | |
| CGAAAATCATCAACAAGATA+AGG | - | chr5.2:7786790-7786809 | None:intergenic | 30.0% | |
| TATACAAGCTGAGAAAGATA+TGG | + | chr5.2:7787923-7787942 | MS.gene09566:CDS | 30.0% | |
| TATCTCTCCAATCAACTATA+AGG | - | chr5.2:7788316-7788335 | None:intergenic | 30.0% | |
| TATTGTTAAGCAACTTAGGT+AGG | - | chr5.2:7787536-7787555 | None:intergenic | 30.0% | |
| TCAATCAATTCAACTTTAGC+TGG | + | chr5.2:7787378-7787397 | MS.gene09566:intron | 30.0% | |
| TCAGCTTGTATAATATGACA+AGG | - | chr5.2:7787915-7787934 | None:intergenic | 30.0% | |
| TTGAACGATGTGAATTACTT+TGG | + | chr5.2:7787663-7787682 | MS.gene09566:CDS | 30.0% | |
| ! | AATTACAAAGCATGGTGTTA+TGG | + | chr5.2:7787735-7787754 | MS.gene09566:CDS | 30.0% |
| ! | GATTTGACTTAGTCATAGTT+AGG | + | chr5.2:7788147-7788166 | MS.gene09566:intron | 30.0% |
| ! | TCTCAGAATCAAAGTATTCA+GGG | - | chr5.2:7786852-7786871 | None:intergenic | 30.0% |
| ! | TCTTTTCCTTAAACTTGTCA+TGG | + | chr5.2:7787005-7787024 | MS.gene09566:CDS | 30.0% |
| !!! | AAGTTTTAGGAACAGGAAAT+AGG | + | chr5.2:7786707-7786726 | MS.gene09566:CDS | 30.0% |
| !!! | TGTTTTTGTTGTTAACGTGT+CGG | + | chr5.2:7787431-7787450 | MS.gene09566:intron | 30.0% |
| AACACCGGAATAACAATATC+TGG | - | chr5.2:7788050-7788069 | None:intergenic | 35.0% | |
| AACGATGTGAATTACTTTGG+AGG | + | chr5.2:7787666-7787685 | MS.gene09566:CDS | 35.0% | |
| ACGTTAGTTGGATTAAGATC+TGG | + | chr5.2:7788171-7788190 | MS.gene09566:intron | 35.0% | |
| ATTGGAGAGATATACTTGTG+AGG | + | chr5.2:7788324-7788343 | MS.gene09566:intron | 35.0% | |
| CTTAAACTTGTCATGGTTTC+CGG | + | chr5.2:7787012-7787031 | MS.gene09566:CDS | 35.0% | |
| GGATAGTTGTGTGGTAATTT+CGG | + | chr5.2:7788228-7788247 | MS.gene09566:intron | 35.0% | |
| TACTAATTACCTTGGTGAAC+CGG | - | chr5.2:7787034-7787053 | None:intergenic | 35.0% | |
| TCGCTGAAAATTACAAAGCA+TGG | + | chr5.2:7787727-7787746 | MS.gene09566:CDS | 35.0% | |
| TGAATGTGTTTAAGCAACAC+CGG | - | chr5.2:7788065-7788084 | None:intergenic | 35.0% | |
| ! | ATCAAAGTATTCAGGGTTAG+TGG | - | chr5.2:7786845-7786864 | None:intergenic | 35.0% |
| ! | CTCACCAGATATTGTTATTC+CGG | + | chr5.2:7788043-7788062 | MS.gene09566:CDS | 35.0% |
| ! | CTCTCAGAATCAAAGTATTC+AGG | - | chr5.2:7786853-7786872 | None:intergenic | 35.0% |
| !! | ACATAGCTCTAATAGTGTCA+CGG | + | chr5.2:7787841-7787860 | MS.gene09566:CDS | 35.0% |
| !! | ATAGTTCTAGCTCATGGATT+TGG | + | chr5.2:7786733-7786752 | MS.gene09566:CDS | 35.0% |
| !! | CATTCTGTTTCTGCAATGAT+TGG | + | chr5.2:7786955-7786974 | MS.gene09566:CDS | 35.0% |
| !!! | AACGTGAAAGTTTTAGGAAC+AGG | + | chr5.2:7786700-7786719 | MS.gene09566:CDS | 35.0% |
| AACTTAATATTGAGCCCACG+AGG | + | chr5.2:7788084-7788103 | MS.gene09566:CDS | 40.0% | |
| ACAAGCTGAGAAAGATATGG+CGG | + | chr5.2:7787926-7787945 | MS.gene09566:CDS | 40.0% | |
| ATATCTGGTGAGCTTAACTG+CGG | - | chr5.2:7788035-7788054 | None:intergenic | 40.0% | |
| CGGAAACCATGACAAGTTTA+AGG | - | chr5.2:7787014-7787033 | None:intergenic | 40.0% | |
| CTATATGATAACATGGGTGC+TGG | + | chr5.2:7786817-7786836 | MS.gene09566:CDS | 40.0% | |
| GACACTATTAGAGCTATGTC+TGG | - | chr5.2:7787840-7787859 | None:intergenic | 40.0% | |
| GAGAGACATTCAAGCTTAGA+AGG | + | chr5.2:7786868-7786887 | MS.gene09566:CDS | 40.0% | |
| GAGTATCTTCACCAACACTT+AGG | + | chr5.2:7787966-7787985 | MS.gene09566:CDS | 40.0% | |
| GTCGAACATTGTTCAACATG+AGG | + | chr5.2:7787814-7787833 | MS.gene09566:CDS | 40.0% | |
| GTTGTCCATCACTATGTTGT+GGG | + | chr5.2:7788458-7788477 | MS.gene09566:CDS | 40.0% | |
| TATCTTCACCAACACTTAGG+TGG | + | chr5.2:7787969-7787988 | MS.gene09566:CDS | 40.0% | |
| TATGACAAGGCACAGTAACA+AGG | - | chr5.2:7787902-7787921 | None:intergenic | 40.0% | |
| TCATAGTTAGGGACGTTAGT+TGG | + | chr5.2:7788159-7788178 | MS.gene09566:intron | 40.0% | |
| TGGTATGGAAGAATGACAGT+GGG | + | chr5.2:7788424-7788443 | MS.gene09566:intron | 40.0% | |
| TTGTCCATCACTATGTTGTG+GGG | + | chr5.2:7788459-7788478 | MS.gene09566:CDS | 40.0% | |
| ! | AAATTTTGCTCCTGACTGAG+TGG | + | chr5.2:7788207-7788226 | MS.gene09566:intron | 40.0% |
| ! | CAAAGTGTTTCCACACAGAT+TGG | - | chr5.2:7786765-7786784 | None:intergenic | 40.0% |
| ! | CAGCGATAGCGTTGAATAAT+TGG | - | chr5.2:7787713-7787732 | None:intergenic | 40.0% |
| ! | GCTCACAACGTGAAAGTTTT+AGG | + | chr5.2:7786694-7786713 | MS.gene09566:CDS | 40.0% |
| !! | AGGTACATAGTTCTAGCTCA+TGG | + | chr5.2:7786727-7786746 | MS.gene09566:CDS | 40.0% |
| ACACAACTATCCACTCAGTC+AGG | - | chr5.2:7788220-7788239 | None:intergenic | 45.0% | |
| ACATCCCCACAACATAGTGA+TGG | - | chr5.2:7788466-7788485 | None:intergenic | 45.0% | |
| AGAATGACAGTGGGAATCGA+AGG | + | chr5.2:7788433-7788452 | MS.gene09566:intron | 45.0% | |
| AGATACTCCGAAACCATCAC+CGG | - | chr5.2:7787954-7787973 | None:intergenic | 45.0% | |
| AGTCTGCATGACCTCAACAA+TGG | - | chr5.2:7788000-7788019 | None:intergenic | 45.0% | |
| ATTGTGTGTGAGACAGTGTG+AGG | - | chr5.2:7787145-7787164 | None:intergenic | 45.0% | |
| CGTTGTCCATCACTATGTTG+TGG | + | chr5.2:7788457-7788476 | MS.gene09566:CDS | 45.0% | |
| GTGGTATGGAAGAATGACAG+TGG | + | chr5.2:7788423-7788442 | MS.gene09566:intron | 45.0% | |
| TGACTGAGTGGATAGTTGTG+TGG | + | chr5.2:7788219-7788238 | MS.gene09566:intron | 45.0% | |
| TGAGAAAGATATGGCGGTTC+CGG | + | chr5.2:7787932-7787951 | MS.gene09566:CDS | 45.0% | |
| TTGGAACAGACCAATCTGTG+TGG | + | chr5.2:7786752-7786771 | MS.gene09566:CDS | 45.0% | |
| !!! | ATAAAATAGATTTTAAAAAA+GGG | + | chr5.2:7787173-7787192 | MS.gene09566:intron | 5.0% |
| !!! | TATAAAATAGATTTTAAAAA+AGG | + | chr5.2:7787172-7787191 | MS.gene09566:intron | 5.0% |
| AGGTGGTCAGTCCATTGTTG+AGG | + | chr5.2:7787986-7788005 | MS.gene09566:CDS | 50.0% | |
| CATGGATTCAGTGGCAGTAC+AGG | + | chr5.2:7787785-7787804 | MS.gene09566:CDS | 50.0% | |
| GTGTTATGGATTCGCTCCAC+TGG | + | chr5.2:7787749-7787768 | MS.gene09566:CDS | 50.0% | |
| GTTGAGGTCATGCAGACTGA+TGG | + | chr5.2:7788002-7788021 | MS.gene09566:CDS | 50.0% | |
| TCATGGTTTCCGGTTCACCA+AGG | + | chr5.2:7787022-7787041 | MS.gene09566:CDS | 50.0% | |
| TGGACTGACCACCTAAGTGT+TGG | - | chr5.2:7787980-7787999 | None:intergenic | 50.0% | |
| AGATATGGCGGTTCCGGTGA+TGG | + | chr5.2:7787938-7787957 | MS.gene09566:CDS | 55.0% | |
| GTGTGTGAGACAGTGTGAGG+CGG | - | chr5.2:7787142-7787161 | None:intergenic | 55.0% | |
| GGGTGGGGACATGGATTCAG+TGG | + | chr5.2:7787776-7787795 | MS.gene09566:CDS | 60.0% | |
| ! | GGATTCGCTCCACTGGCTGT+GGG | + | chr5.2:7787756-7787775 | MS.gene09566:CDS | 60.0% |
| ! | GGCGGTTCCGGTGATGGTTT+CGG | + | chr5.2:7787944-7787963 | MS.gene09566:CDS | 60.0% |
| ! | TGGATTCGCTCCACTGGCTG+TGG | + | chr5.2:7787755-7787774 | MS.gene09566:CDS | 60.0% |
| ACTGGCTGTGGGTGGGGACA+TGG | + | chr5.2:7787767-7787786 | MS.gene09566:CDS | 65.0% | |
| ATGTCCCCACCCACAGCCAG+TGG | - | chr5.2:7787768-7787787 | None:intergenic | 65.0% | |
| ! | TCGCTCCACTGGCTGTGGGT+GGG | + | chr5.2:7787760-7787779 | MS.gene09566:CDS | 65.0% |
| ! | TTCGCTCCACTGGCTGTGGG+TGG | + | chr5.2:7787759-7787778 | MS.gene09566:CDS | 65.0% |
| ! | CGCTCCACTGGCTGTGGGTG+GGG | + | chr5.2:7787761-7787780 | MS.gene09566:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 7786676 | 7788489 | 7786676 | ID=MS.gene09566 |
| chr5.2 | mRNA | 7786676 | 7788489 | 7786676 | ID=MS.gene09566.t1;Parent=MS.gene09566 |
| chr5.2 | exon | 7786676 | 7787043 | 7786676 | ID=MS.gene09566.t1.exon1;Parent=MS.gene09566.t1 |
| chr5.2 | CDS | 7786676 | 7787043 | 7786676 | ID=cds.MS.gene09566.t1;Parent=MS.gene09566.t1 |
| chr5.2 | exon | 7787659 | 7788105 | 7787659 | ID=MS.gene09566.t1.exon2;Parent=MS.gene09566.t1 |
| chr5.2 | CDS | 7787659 | 7788105 | 7787659 | ID=cds.MS.gene09566.t1;Parent=MS.gene09566.t1 |
| chr5.2 | exon | 7788435 | 7788489 | 7788435 | ID=MS.gene09566.t1.exon3;Parent=MS.gene09566.t1 |
| chr5.2 | CDS | 7788435 | 7788489 | 7788435 | ID=cds.MS.gene09566.t1;Parent=MS.gene09566.t1 |
| Gene Sequence |
| Protein sequence |
