Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09766.t1 | XP_003611330.1 | 95 | 303 | 11 | 1 | 1 | 299 | 26 | 328 | 1.10E-163 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09766.t1 | Q93YQ3 | 63.0 | 297 | 108 | 1 | 1 | 295 | 2 | 298 | 5.9e-110 | 399.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09766.t1 | G7JXD1 | 95.0 | 303 | 11 | 1 | 1 | 299 | 26 | 328 | 7.9e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene09766 | 0.803802 | 2.93E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene09766 | 0.831865 | 1.31E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene09766 | 0.803961 | 2.71E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene09766 | 0.804576 | 2.02E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene09766 | 0.834483 | 2.92E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene09766 | 0.806624 | 7.51E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene09766 | 0.813091 | 3.05E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene09766 | 0.814957 | 1.18E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene09766 | 0.810465 | 1.14E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene09766 | 0.843493 | 1.35E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene09766 | 0.825583 | 4.33E-54 | -1.69E-46 |
| MS.gene052255 | MS.gene09766 | 0.803837 | 2.88E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene09766 | 0.844264 | 8.42E-59 | -1.69E-46 |
| MS.gene053073 | MS.gene09766 | 0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene09766 | 0.850268 | 1.90E-60 | -1.69E-46 |
| MS.gene053209 | MS.gene09766 | 0.803726 | 3.04E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene09766 | 0.836172 | 1.09E-56 | -1.69E-46 |
| MS.gene053758 | MS.gene09766 | 0.811294 | 7.53E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene09766 | 0.806638 | 7.46E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene09766 | 0.809526 | 1.81E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene09766 | 0.808491 | 3.02E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene09766 | 0.814035 | 1.89E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene09766 | 0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene09766 | 0.862197 | 6.01E-64 | -1.69E-46 |
| MS.gene05702 | MS.gene09766 | 0.814988 | 1.16E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene09766 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene09766 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene09766 | 0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene09766 | 0.811603 | 6.45E-51 | -1.69E-46 |
| MS.gene057796 | MS.gene09766 | 0.804623 | 1.98E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene09766 | 0.815932 | 7.17E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene09766 | 0.858973 | 5.70E-63 | -1.69E-46 |
| MS.gene058949 | MS.gene09766 | 0.817185 | 3.76E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene09766 | 0.835897 | 1.28E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene09766 | 0.82414 | 9.49E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene09766 | 0.813775 | 2.16E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene09766 | 0.816245 | 6.11E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene09766 | 0.810338 | 1.21E-50 | -1.69E-46 |
| MS.gene059708 | MS.gene09766 | 0.801425 | 9.06E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene09766 | 0.836967 | 6.86E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene09766 | 0.823653 | 1.23E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene09766 | 0.832522 | 9.01E-56 | -1.69E-46 |
| MS.gene060495 | MS.gene09766 | 0.814702 | 1.35E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene09766 | 0.847466 | 1.14E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene09766 | -0.835037 | 2.12E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene09766 | 0.817914 | 2.58E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09766.t1 | MTR_5g012850 | 96.321 | 299 | 7 | 1 | 1 | 295 | 26 | 324 | 0.0 | 597 |
| MS.gene09766.t1 | MTR_5g012850 | 95.341 | 279 | 9 | 1 | 1 | 275 | 26 | 304 | 0.0 | 554 |
| MS.gene09766.t1 | MTR_5g012850 | 94.094 | 254 | 11 | 1 | 1 | 250 | 26 | 279 | 4.87e-177 | 494 |
| MS.gene09766.t1 | MTR_7g016670 | 73.944 | 284 | 74 | 0 | 12 | 295 | 16 | 299 | 2.43e-155 | 441 |
| MS.gene09766.t1 | MTR_5g012850 | 95.349 | 215 | 6 | 1 | 1 | 211 | 26 | 240 | 4.33e-151 | 427 |
| MS.gene09766.t1 | MTR_5g012860 | 95.960 | 99 | 4 | 0 | 297 | 395 | 28 | 126 | 2.86e-65 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09766.t1 | AT4G17360 | 63.245 | 302 | 101 | 2 | 4 | 295 | 2 | 303 | 3.20e-143 | 410 |
| MS.gene09766.t1 | AT5G47435 | 63.636 | 297 | 103 | 2 | 4 | 295 | 2 | 298 | 3.14e-142 | 407 |
| MS.gene09766.t1 | AT5G47435 | 63.636 | 297 | 103 | 2 | 4 | 295 | 2 | 298 | 3.14e-142 | 407 |
| MS.gene09766.t1 | AT4G17360 | 59.524 | 252 | 92 | 2 | 4 | 245 | 2 | 253 | 5.27e-111 | 325 |
| MS.gene09766.t1 | AT4G17360 | 58.257 | 218 | 81 | 2 | 4 | 211 | 2 | 219 | 4.69e-91 | 274 |
Find 69 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACGAATCACTTCGCTTTC+TGG | 0.117075 | 5.1:-5989541 | None:intergenic |
| TCAAAGGCACATGTTGAATT+TGG | 0.159845 | 5.1:-5991689 | None:intergenic |
| AAGAAGATTACCTGCTTAAA+TGG | 0.182244 | 5.1:-5989876 | None:intergenic |
| GATGCAGGTGTGAAATTAAT+TGG | 0.258885 | 5.1:+5990058 | MS.gene09766:CDS |
| TTCACCATTTGTTCAATAAT+AGG | 0.298667 | 5.1:-5990121 | None:intergenic |
| TGGATATCACTTGTGTAATT+AGG | 0.320225 | 5.1:+5989402 | MS.gene09766:CDS |
| TCCTCTTCCATTTGCATTCG+AGG | 0.320625 | 5.1:-5988698 | None:intergenic |
| TGTTGAATTTGGCAAGGTTT+TGG | 0.325576 | 5.1:-5991678 | None:intergenic |
| ACTGTAATTTCTGACAAGTT+TGG | 0.369105 | 5.1:-5988266 | None:intergenic |
| TGCCTGTTGCCATCATTTAG+AGG | 0.382262 | 5.1:+5989846 | MS.gene09766:CDS |
| AGAACAGCAATCTTATACTT+AGG | 0.398072 | 5.1:-5988785 | None:intergenic |
| CGCCTCTAAATGATGGCAAC+AGG | 0.408630 | 5.1:-5989848 | None:intergenic |
| GGCCAATGTGCATGTCCCTT+TGG | 0.419715 | 5.1:+5991638 | MS.gene09766:CDS |
| CGCTTTCTGGACCTCTATCA+TGG | 0.423861 | 5.1:-5989528 | None:intergenic |
| GCAGAGGTTTGTGCAGAAAT+CGG | 0.428242 | 5.1:+5990265 | MS.gene09766:CDS |
| AATAATGTTACCACCATTTG+AGG | 0.432255 | 5.1:-5988503 | None:intergenic |
| TGTTGGCAGGCCTTTGATGC+AGG | 0.452558 | 5.1:+5990043 | MS.gene09766:intron |
| AGACATGGATACCATGGGTT+AGG | 0.456246 | 5.1:-5988327 | None:intergenic |
| TGAAACCAGAACACAATCTT+CGG | 0.465867 | 5.1:-5988240 | None:intergenic |
| TCAGATTGCATTGCCTCAAA+TGG | 0.473487 | 5.1:+5988490 | MS.gene09766:CDS |
| AACATCCGAAGATTGTGTTC+TGG | 0.477882 | 5.1:+5988235 | MS.gene09766:CDS |
| GATTACCTGCTTAAATGGAT+TGG | 0.480831 | 5.1:-5989871 | None:intergenic |
| TCCAGTTCCTTCCTAACCCA+TGG | 0.492046 | 5.1:+5988316 | MS.gene09766:CDS |
| TGCTGTTCTTGCATCAAGCC+AGG | 0.492207 | 5.1:+5988799 | MS.gene09766:CDS |
| TAAATGGCCTCGAATGCAAA+TGG | 0.495596 | 5.1:+5988691 | MS.gene09766:CDS |
| TGATTCATTACACGGATGGC+AGG | 0.499817 | 5.1:+5989364 | MS.gene09766:CDS |
| TGGACCTATTATTGAACAAA+TGG | 0.500868 | 5.1:+5990117 | MS.gene09766:CDS |
| GTGACTGAAGGACGTGATGC+TGG | 0.501654 | 5.1:+5990097 | MS.gene09766:CDS |
| GCCTCGAATGCAAATGGAAG+AGG | 0.516563 | 5.1:+5988697 | MS.gene09766:CDS |
| TGGCCATTGAGGCATATACT+AGG | 0.518992 | 5.1:-5991620 | None:intergenic |
| TAATTTCACACCTGCATCAA+AGG | 0.519469 | 5.1:-5990053 | None:intergenic |
| AACAGAGTGTTCAGGGCCAA+AGG | 0.532291 | 5.1:-5991654 | None:intergenic |
| TTGCCTAGTATATGCCTCAA+TGG | 0.532572 | 5.1:+5991617 | MS.gene09766:CDS |
| AGAAGAGGATATCTTAAAGC+TGG | 0.532640 | 5.1:+5989621 | MS.gene09766:CDS |
| AGGCGCCAATCCATTTAAGC+AGG | 0.538548 | 5.1:+5989866 | MS.gene09766:CDS |
| TGTGAGAGCCGATGTGATGC+AGG | 0.546444 | 5.1:+5991569 | MS.gene09766:CDS |
| TTTAATAGTAACCATGATAG+AGG | 0.555002 | 5.1:+5989517 | MS.gene09766:intron |
| TAAATGATGGCAACAGGCAA+TGG | 0.555032 | 5.1:-5989842 | None:intergenic |
| CAGTGTCACTGTGGATGTCA+TGG | 0.555585 | 5.1:+5991770 | MS.gene09766:CDS |
| AAAAGAGAATAAAAGAGAAG+AGG | 0.557542 | 5.1:+5989606 | MS.gene09766:CDS |
| CTCATAAAGATGACTTGCAG+AGG | 0.558739 | 5.1:+5990249 | MS.gene09766:CDS |
| GGCACATGTTGAATTTGGCA+AGG | 0.564536 | 5.1:-5991684 | None:intergenic |
| ACCATGGGTTAGGAAGGAAC+TGG | 0.564927 | 5.1:-5988317 | None:intergenic |
| CTTCTAATGCTGCAAGCAGA+AGG | 0.568206 | 5.1:-5991734 | None:intergenic |
| TAATTGATTCATTACACGGA+TGG | 0.568504 | 5.1:+5989360 | MS.gene09766:CDS |
| GGATTGGCGCCTCTAAATGA+TGG | 0.569201 | 5.1:-5989855 | None:intergenic |
| CGCAAACTCCTGCATCACAT+CGG | 0.570725 | 5.1:-5991577 | None:intergenic |
| CTTTAAGCAATCATTATCAA+AGG | 0.573151 | 5.1:-5991705 | None:intergenic |
| ATGGATACCATGGGTTAGGA+AGG | 0.575698 | 5.1:-5988323 | None:intergenic |
| TGTCTAATTGATTCATTACA+CGG | 0.577226 | 5.1:+5989356 | MS.gene09766:CDS |
| ACAGAGTGTTCAGGGCCAAA+GGG | 0.578702 | 5.1:-5991653 | None:intergenic |
| ATTACACAAGTGATATCCAC+TGG | 0.579370 | 5.1:-5989398 | None:intergenic |
| GACATGCACATTGGCCATTG+AGG | 0.589703 | 5.1:-5991631 | None:intergenic |
| GGCCAAAGGGACATGCACAT+TGG | 0.590395 | 5.1:-5991640 | None:intergenic |
| ATTGAAAGACATGGATACCA+TGG | 0.597080 | 5.1:-5988333 | None:intergenic |
| CAGCATTAGAAGCTGTCTTG+AGG | 0.597720 | 5.1:+5991745 | MS.gene09766:CDS |
| TTGCAGGGGTACAACTCAGA+AGG | 0.605666 | 5.1:+5991489 | MS.gene09766:intron |
| TCATTACACGGATGGCAGGA+TGG | 0.608907 | 5.1:+5989368 | MS.gene09766:CDS |
| TTATACTTAGGATCGAGAGC+TGG | 0.613043 | 5.1:-5988773 | None:intergenic |
| GATTGCATTGCCTCAAATGG+TGG | 0.622165 | 5.1:+5988493 | MS.gene09766:CDS |
| AGTACTTGCAAGGTATACGA+AGG | 0.634867 | 5.1:+5989663 | MS.gene09766:CDS |
| TTACAGGACATTGAAAGACA+TGG | 0.637625 | 5.1:-5988342 | None:intergenic |
| TTGAAAGACATGGATACCAT+GGG | 0.638453 | 5.1:-5988332 | None:intergenic |
| CTTGAGGCTCAGTGTCACTG+TGG | 0.648350 | 5.1:+5991761 | MS.gene09766:CDS |
| AGGGGTACAACTCAGAAGGA+TGG | 0.650570 | 5.1:+5991493 | MS.gene09766:intron |
| GTAATGAATCAATTAGACAA+TGG | 0.659186 | 5.1:-5989352 | None:intergenic |
| GCAGGATGGAAGACTTCCAG+TGG | 0.665552 | 5.1:+5989382 | MS.gene09766:CDS |
| GGCATATACTAGGCAACTCG+AGG | 0.668865 | 5.1:-5991610 | None:intergenic |
| TGGTGGTAACATTATTGCTG+CGG | 0.706543 | 5.1:+5988510 | MS.gene09766:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAACATGAATAA+AGG | + | chr5.1:5991257-5991276 | MS.gene09766:intron | 10.0% |
| !!! | ATTTTTCAATAATAAAGAAA+TGG | + | chr5.1:5989069-5989088 | MS.gene09766:intron | 10.0% |
| !! | AAATGATGATAATAATTCAA+TGG | - | chr5.1:5988389-5988408 | None:intergenic | 15.0% |
| !! | AATTTCTCTTGAAAAATAAA+AGG | + | chr5.1:5989178-5989197 | MS.gene09766:intron | 15.0% |
| !! | ATATATCTAATACATACAAA+AGG | - | chr5.1:5988858-5988877 | None:intergenic | 15.0% |
| !! | CTAAGTTATTGTATAATAAT+TGG | + | chr5.1:5990733-5990752 | MS.gene09766:intron | 15.0% |
| !! | TTTATTATTGAAAAATTGAG+AGG | - | chr5.1:5989065-5989084 | None:intergenic | 15.0% |
| !!! | ATGTTATCTTCATTTTATTT+GGG | + | chr5.1:5988944-5988963 | MS.gene09766:intron | 15.0% |
| !!! | GTTGTTTTTAAATAATGATA+AGG | - | chr5.1:5989586-5989605 | None:intergenic | 15.0% |
| !!! | TATGTTATCTTCATTTTATT+TGG | + | chr5.1:5988943-5988962 | MS.gene09766:intron | 15.0% |
| !!! | TATTTTTTTGTTTTTGTGAT+AGG | + | chr5.1:5988441-5988460 | MS.gene09766:intron | 15.0% |
| !! | ATAAAGGATGTTAACAATTT+CGG | + | chr5.1:5991273-5991292 | MS.gene09766:intron | 20.0% |
| !! | CAAAGAACATTTAAATTAGA+CGG | + | chr5.1:5990571-5990590 | MS.gene09766:intron | 20.0% |
| !! | CATTACTAGAATTTGTATAA+AGG | + | chr5.1:5989099-5989118 | MS.gene09766:intron | 20.0% |
| !! | TACTATTAAATGTATCAACA+TGG | - | chr5.1:5989507-5989526 | None:intergenic | 20.0% |
| !! | TATAAAATTGCAATATAACG+AGG | - | chr5.1:5991362-5991381 | None:intergenic | 20.0% |
| !! | TTTAATATGATAGGTTATGT+TGG | + | chr5.1:5990026-5990045 | MS.gene09766:intron | 20.0% |
| !!! | AATTACACATTTTGGTAAAA+TGG | - | chr5.1:5990456-5990475 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAGAGAAATTGAA+AGG | - | chr5.1:5989175-5989194 | None:intergenic | 20.0% |
| !!! | GATTTTTCTACGAAAATTTA+TGG | - | chr5.1:5991121-5991140 | None:intergenic | 20.0% |
| !!! | TAAATTTTCGTAGAAAAATC+TGG | + | chr5.1:5991121-5991140 | MS.gene09766:intron | 20.0% |
| !!! | TAATATCTAGCAACTTTTTA+AGG | + | chr5.1:5989790-5989809 | MS.gene09766:CDS | 20.0% |
| !!! | TATTTTCTTAAGAGTAATTG+CGG | + | chr5.1:5989746-5989765 | MS.gene09766:intron | 20.0% |
| ! | AAAAGAGAATAAAAGAGAAG+AGG | + | chr5.1:5989606-5989625 | MS.gene09766:CDS | 25.0% |
| ! | AAACATTTCACATGTGATAT+TGG | - | chr5.1:5988418-5988437 | None:intergenic | 25.0% |
| ! | AATAAGCTAAAAACACCTTA+CGG | - | chr5.1:5989920-5989939 | None:intergenic | 25.0% |
| ! | AATTGCTATAAACCTCTATT+TGG | + | chr5.1:5991022-5991041 | MS.gene09766:intron | 25.0% |
| ! | CAAAGTTGTTTATCCAAAAA+TGG | + | chr5.1:5989993-5990012 | MS.gene09766:intron | 25.0% |
| ! | CTTTAAGCAATCATTATCAA+AGG | - | chr5.1:5991708-5991727 | None:intergenic | 25.0% |
| ! | GCAAATGTGTTTAATATGAT+AGG | + | chr5.1:5990017-5990036 | MS.gene09766:intron | 25.0% |
| ! | GTAATGAATCAATTAGACAA+TGG | - | chr5.1:5989355-5989374 | None:intergenic | 25.0% |
| ! | GTACGTATTTATAATCAGAT+TGG | + | chr5.1:5990593-5990612 | MS.gene09766:intron | 25.0% |
| ! | GTATATTTCAATTGTGTCAA+TGG | - | chr5.1:5991336-5991355 | None:intergenic | 25.0% |
| ! | TAAAACTAACAAGAAACACA+AGG | + | chr5.1:5990954-5990973 | MS.gene09766:intron | 25.0% |
| ! | TTCACCATTTGTTCAATAAT+AGG | - | chr5.1:5990124-5990143 | None:intergenic | 25.0% |
| ! | TTTAATAGTAACCATGATAG+AGG | + | chr5.1:5989517-5989536 | MS.gene09766:intron | 25.0% |
| !! | AAGAATACTGTTGTATTTTG+AGG | + | chr5.1:5990362-5990381 | MS.gene09766:intron | 25.0% |
| !! | ACAGTATTCTTTTCTTCATA+TGG | - | chr5.1:5990353-5990372 | None:intergenic | 25.0% |
| !! | AGGCATAAAACTAATAGTTT+TGG | + | chr5.1:5990974-5990993 | MS.gene09766:intron | 25.0% |
| !! | AGTTGTTCAATTACACATTT+TGG | - | chr5.1:5990464-5990483 | None:intergenic | 25.0% |
| !! | CCAACTAAAATTTTGCTAAA+TGG | - | chr5.1:5991237-5991256 | None:intergenic | 25.0% |
| !! | GTTTTTGTACCTCAAAATAA+AGG | + | chr5.1:5988535-5988554 | MS.gene09766:CDS | 25.0% |
| !! | TGTCTAATTGATTCATTACA+CGG | + | chr5.1:5989356-5989375 | MS.gene09766:CDS | 25.0% |
| !! | TTGCATCTAATACATGTTTT+TGG | + | chr5.1:5991465-5991484 | MS.gene09766:intron | 25.0% |
| !! | TTGTTTTCGATCATGTTAAA+TGG | + | chr5.1:5988675-5988694 | MS.gene09766:CDS | 25.0% |
| !! | TTTTTGTGATAGGATTCAAT+TGG | + | chr5.1:5988451-5988470 | MS.gene09766:intron | 25.0% |
| !!! | AGAATACTGTTGTATTTTGA+GGG | + | chr5.1:5990363-5990382 | MS.gene09766:intron | 25.0% |
| !!! | CCATTTAGCAAAATTTTAGT+TGG | + | chr5.1:5991234-5991253 | MS.gene09766:intron | 25.0% |
| !!! | TCTTTCTGTTTTTTCGTTTT+CGG | - | chr5.1:5990883-5990902 | None:intergenic | 25.0% |
| !!! | TTTTTGTAAAGGTGTAGATA+TGG | + | chr5.1:5990648-5990667 | MS.gene09766:intron | 25.0% |
| !!! | TTTTTTTTTTTTTGAGGGCA+AGG | - | chr5.1:5990418-5990437 | None:intergenic | 25.0% |
| AAAACATCACATTGTTATGC+AGG | - | chr5.1:5990686-5990705 | None:intergenic | 30.0% | |
| AAGAAGATTACCTGCTTAAA+TGG | - | chr5.1:5989879-5989898 | None:intergenic | 30.0% | |
| AATAATGTTACCACCATTTG+AGG | - | chr5.1:5988506-5988525 | None:intergenic | 30.0% | |
| AATGGATGTGAGAATATGAA+TGG | - | chr5.1:5988371-5988390 | None:intergenic | 30.0% | |
| ACATACAAAAGGATAACATG+AGG | - | chr5.1:5988847-5988866 | None:intergenic | 30.0% | |
| ACTGTAATTTCTGACAAGTT+TGG | - | chr5.1:5988269-5988288 | None:intergenic | 30.0% | |
| AGAACAGCAATCTTATACTT+AGG | - | chr5.1:5988788-5988807 | None:intergenic | 30.0% | |
| ATTTAAGCAGGTAATCTTCT+TGG | + | chr5.1:5989878-5989897 | MS.gene09766:intron | 30.0% | |
| CAACAGTGACAAATATATCT+TGG | - | chr5.1:5990764-5990783 | None:intergenic | 30.0% | |
| GATATATTTGTCACTGTTGT+TGG | + | chr5.1:5990765-5990784 | MS.gene09766:intron | 30.0% | |
| TAAGCCTAATATGCTCTTAA+TGG | + | chr5.1:5991203-5991222 | MS.gene09766:intron | 30.0% | |
| TGGACCTATTATTGAACAAA+TGG | + | chr5.1:5990117-5990136 | MS.gene09766:CDS | 30.0% | |
| TGGATATCACTTGTGTAATT+AGG | + | chr5.1:5989402-5989421 | MS.gene09766:CDS | 30.0% | |
| TTTAAGCAGGTAATCTTCTT+GGG | + | chr5.1:5989879-5989898 | MS.gene09766:intron | 30.0% | |
| TTTAATAATGTGTGTGTACC+TGG | - | chr5.1:5988820-5988839 | None:intergenic | 30.0% | |
| ! | AAACACATTTGCTCCATTTT+TGG | - | chr5.1:5990009-5990028 | None:intergenic | 30.0% |
| ! | AAGTGATTCGTTTTCTTCAA+AGG | + | chr5.1:5989551-5989570 | MS.gene09766:CDS | 30.0% |
| ! | AATTTTGCTAAATGGCCAAT+TGG | - | chr5.1:5991229-5991248 | None:intergenic | 30.0% |
| ! | GAAGCTTCTTTCATGTTTTT+GGG | - | chr5.1:5991410-5991429 | None:intergenic | 30.0% |
| ! | TAATTGATTCATTACACGGA+TGG | + | chr5.1:5989360-5989379 | MS.gene09766:CDS | 30.0% |
| ! | TGAAGCTTCTTTCATGTTTT+TGG | - | chr5.1:5991411-5991430 | None:intergenic | 30.0% |
| ! | TGCATAACAATGTGATGTTT+TGG | + | chr5.1:5990685-5990704 | MS.gene09766:intron | 30.0% |
| ! | TTTTCGTAGAAAAATCTGGT+TGG | + | chr5.1:5991125-5991144 | MS.gene09766:intron | 30.0% |
| !!! | CTGATTTTTTAGTACTTGCA+AGG | + | chr5.1:5989653-5989672 | MS.gene09766:CDS | 30.0% |
| !!! | TAGAAGAGTCCTTTATTTTG+AGG | - | chr5.1:5988547-5988566 | None:intergenic | 30.0% |
| !!! | TTCGGTTTTAACTGTTTTAC+TGG | - | chr5.1:5990865-5990884 | None:intergenic | 30.0% |
| AGAAGAGGATATCTTAAAGC+TGG | + | chr5.1:5989621-5989640 | MS.gene09766:CDS | 35.0% | |
| AGAATATGAATGGCACTTAC+AGG | - | chr5.1:5988361-5988380 | None:intergenic | 35.0% | |
| AGATTCAATACCAGTAGAGA+GGG | + | chr5.1:5990828-5990847 | MS.gene09766:intron | 35.0% | |
| AGTATGTTATTGTGCAGCTT+AGG | - | chr5.1:5990915-5990934 | None:intergenic | 35.0% | |
| ATATGATAGGTTATGTTGGC+AGG | + | chr5.1:5990030-5990049 | MS.gene09766:intron | 35.0% | |
| ATATGCTCTTAATGGCCAAT+TGG | + | chr5.1:5991211-5991230 | MS.gene09766:intron | 35.0% | |
| ATTACACAAGTGATATCCAC+TGG | - | chr5.1:5989401-5989420 | None:intergenic | 35.0% | |
| ATTGAAAGACATGGATACCA+TGG | - | chr5.1:5988336-5988355 | None:intergenic | 35.0% | |
| CAATTGTGTCAATGGTAGTT+TGG | - | chr5.1:5991328-5991347 | None:intergenic | 35.0% | |
| CATAAACATGCATATCCACA+AGG | + | chr5.1:5989210-5989229 | MS.gene09766:intron | 35.0% | |
| CCAAACTGTATACTCTTTGA+GGG | + | chr5.1:5990799-5990818 | MS.gene09766:intron | 35.0% | |
| GATGCAGGTGTGAAATTAAT+TGG | + | chr5.1:5990058-5990077 | MS.gene09766:CDS | 35.0% | |
| GATGCTTTGCATCAATAACA+TGG | - | chr5.1:5991083-5991102 | None:intergenic | 35.0% | |
| GATTACCTGCTTAAATGGAT+TGG | - | chr5.1:5989874-5989893 | None:intergenic | 35.0% | |
| GATTATCCATAAAGCCAACT+TGG | - | chr5.1:5991435-5991454 | None:intergenic | 35.0% | |
| TAATTTCACACCTGCATCAA+AGG | - | chr5.1:5990056-5990075 | None:intergenic | 35.0% | |
| TAGATTCAATACCAGTAGAG+AGG | + | chr5.1:5990827-5990846 | MS.gene09766:intron | 35.0% | |
| TCCAAACTGTATACTCTTTG+AGG | + | chr5.1:5990798-5990817 | MS.gene09766:intron | 35.0% | |
| TGAAACCAGAACACAATCTT+CGG | - | chr5.1:5988243-5988262 | None:intergenic | 35.0% | |
| TGAGAAACAATGTCTGTCAA+TGG | + | chr5.1:5990295-5990314 | MS.gene09766:intron | 35.0% | |
| TTAAGCAGGTAATCTTCTTG+GGG | + | chr5.1:5989880-5989899 | MS.gene09766:intron | 35.0% | |
| TTACAGGACATTGAAAGACA+TGG | - | chr5.1:5988345-5988364 | None:intergenic | 35.0% | |
| TTGAAAGACATGGATACCAT+GGG | - | chr5.1:5988335-5988354 | None:intergenic | 35.0% | |
| ! | CTCTACTGGTATTGAATCTA+TGG | - | chr5.1:5990827-5990846 | None:intergenic | 35.0% |
| ! | TCAAAGGCACATGTTGAATT+TGG | - | chr5.1:5991692-5991711 | None:intergenic | 35.0% |
| ! | TGTTGAATTTGGCAAGGTTT+TGG | - | chr5.1:5991681-5991700 | None:intergenic | 35.0% |
| ! | TTGGCCATTAAGAGCATATT+AGG | - | chr5.1:5991210-5991229 | None:intergenic | 35.0% |
| !! | ACAAGTCATTTTGTGACTGA+AGG | + | chr5.1:5990085-5990104 | MS.gene09766:CDS | 35.0% |
| !! | AGCAACTTTTTAAGGAGCTA+TGG | + | chr5.1:5989798-5989817 | MS.gene09766:CDS | 35.0% |
| !! | CTTTTTAAGGAGCTATGGAA+AGG | + | chr5.1:5989803-5989822 | MS.gene09766:CDS | 35.0% |
| !! | TCTCAGGTGAAAATTTTGAC+AGG | - | chr5.1:5990544-5990563 | None:intergenic | 35.0% |
| !! | TTGACAGGTTAAAAGTGTCA+AGG | - | chr5.1:5990529-5990548 | None:intergenic | 35.0% |
| !! | TTTTGGTAACAGAGTGTTCA+GGG | - | chr5.1:5991664-5991683 | None:intergenic | 35.0% |
| !!! | AACAATGTGATGTTTTGGTC+TGG | + | chr5.1:5990690-5990709 | MS.gene09766:intron | 35.0% |
| !!! | AATACATGTTTTTGGCTTGC+AGG | + | chr5.1:5991473-5991492 | MS.gene09766:intron | 35.0% |
| !!! | ATACATGTTTTTGGCTTGCA+GGG | + | chr5.1:5991474-5991493 | MS.gene09766:intron | 35.0% |
| !!! | ATAGTTTTGGTTCTAGTCAC+TGG | + | chr5.1:5990987-5991006 | MS.gene09766:intron | 35.0% |
| !!! | ATGTTTTGGTCTGGTTTATG+CGG | + | chr5.1:5990699-5990718 | MS.gene09766:intron | 35.0% |
| !!! | TGCTGCTGAGTTTTTTGTAA+AGG | + | chr5.1:5990637-5990656 | MS.gene09766:intron | 35.0% |
| AAACGAATCACTTCGCTTTC+TGG | - | chr5.1:5989544-5989563 | None:intergenic | 40.0% | |
| AACATCCGAAGATTGTGTTC+TGG | + | chr5.1:5988235-5988254 | MS.gene09766:CDS | 40.0% | |
| AGTACTTGCAAGGTATACGA+AGG | + | chr5.1:5989663-5989682 | MS.gene09766:CDS | 40.0% | |
| GAAAGAAGCTTCATCCAAGT+TGG | + | chr5.1:5991418-5991437 | MS.gene09766:intron | 40.0% | |
| GTAAGAGTAGAGCCAAATAG+AGG | - | chr5.1:5991037-5991056 | None:intergenic | 40.0% | |
| TAAATGATGGCAACAGGCAA+TGG | - | chr5.1:5989845-5989864 | None:intergenic | 40.0% | |
| TAAATGGCCTCGAATGCAAA+TGG | + | chr5.1:5988691-5988710 | MS.gene09766:CDS | 40.0% | |
| TAATCTTCTTGGGGAATGTG+AGG | + | chr5.1:5989889-5989908 | MS.gene09766:intron | 40.0% | |
| TCAGATTGCATTGCCTCAAA+TGG | + | chr5.1:5988490-5988509 | MS.gene09766:CDS | 40.0% | |
| TCGAACTTCTTTGTACCTTG+TGG | - | chr5.1:5989228-5989247 | None:intergenic | 40.0% | |
| TGGTGGTAACATTATTGCTG+CGG | + | chr5.1:5988510-5988529 | MS.gene09766:CDS | 40.0% | |
| TGTTCTTTGCATCTGTTCTC+AGG | - | chr5.1:5990560-5990579 | None:intergenic | 40.0% | |
| TTATACTTAGGATCGAGAGC+TGG | - | chr5.1:5988776-5988795 | None:intergenic | 40.0% | |
| TTGCCTAGTATATGCCTCAA+TGG | + | chr5.1:5991617-5991636 | MS.gene09766:CDS | 40.0% | |
| ! | CCCTCAAAGAGTATACAGTT+TGG | - | chr5.1:5990802-5990821 | None:intergenic | 40.0% |
| ! | CTCATAAAGATGACTTGCAG+AGG | + | chr5.1:5990249-5990268 | MS.gene09766:CDS | 40.0% |
| !! | CTTCATCCAAGTTGGCTTTA+TGG | + | chr5.1:5991426-5991445 | MS.gene09766:intron | 40.0% |
| !! | GTCAATGGTAGTTTGGTGTT+AGG | - | chr5.1:5991321-5991340 | None:intergenic | 40.0% |
| !! | GTTTTGGTAACAGAGTGTTC+AGG | - | chr5.1:5991665-5991684 | None:intergenic | 40.0% |
| !! | TTTTTGAGGGCAAGGTTTTG+AGG | - | chr5.1:5990410-5990429 | None:intergenic | 40.0% |
| !!! | TACATGTTTTTGGCTTGCAG+GGG | + | chr5.1:5991475-5991494 | MS.gene09766:intron | 40.0% |
| AGACATGGATACCATGGGTT+AGG | - | chr5.1:5988330-5988349 | None:intergenic | 45.0% | |
| AGGGGAAACTCCACTAAAAG+CGG | - | chr5.1:5991151-5991170 | None:intergenic | 45.0% | |
| ATACCAGTAGAGAGGGAAAG+AGG | + | chr5.1:5990835-5990854 | MS.gene09766:intron | 45.0% | |
| CAGCATTAGAAGCTGTCTTG+AGG | + | chr5.1:5991745-5991764 | MS.gene09766:CDS | 45.0% | |
| CTCTCAACCTGCAGTTGAAA+AGG | - | chr5.1:5990224-5990243 | None:intergenic | 45.0% | |
| CTTCTAATGCTGCAAGCAGA+AGG | - | chr5.1:5991737-5991756 | None:intergenic | 45.0% | |
| GATTGCATTGCCTCAAATGG+TGG | + | chr5.1:5988493-5988512 | MS.gene09766:CDS | 45.0% | |
| GCAGAGGTTTGTGCAGAAAT+CGG | + | chr5.1:5990265-5990284 | MS.gene09766:CDS | 45.0% | |
| GGCACATGTTGAATTTGGCA+AGG | - | chr5.1:5991687-5991706 | None:intergenic | 45.0% | |
| GTCCTGCAACAGTATAGAGA+GGG | - | chr5.1:5989333-5989352 | None:intergenic | 45.0% | |
| TCCTCTTCCATTTGCATTCG+AGG | - | chr5.1:5988701-5988720 | None:intergenic | 45.0% | |
| TGATTCATTACACGGATGGC+AGG | + | chr5.1:5989364-5989383 | MS.gene09766:CDS | 45.0% | |
| TGCCTGTTGCCATCATTTAG+AGG | + | chr5.1:5989846-5989865 | MS.gene09766:CDS | 45.0% | |
| TGGCCATTGAGGCATATACT+AGG | - | chr5.1:5991623-5991642 | None:intergenic | 45.0% | |
| TTGTGCAAAAGAGAGCCTTG+CGG | - | chr5.1:5991179-5991198 | None:intergenic | 45.0% | |
| TTTCCTCTTTCCCTCTCTAC+TGG | - | chr5.1:5990841-5990860 | None:intergenic | 45.0% | |
| ! | GCTACAACCTTTTCAACTGC+AGG | + | chr5.1:5990214-5990233 | MS.gene09766:intron | 45.0% |
| ! | TGGTCTGGTTTATGCGGTTT+CGG | + | chr5.1:5990705-5990724 | MS.gene09766:intron | 45.0% |
| !! | ATGGATACCATGGGTTAGGA+AGG | - | chr5.1:5988326-5988345 | None:intergenic | 45.0% |
| !!! | AAAATTAATAATTTTAATGA+CGG | + | chr5.1:5989256-5989275 | MS.gene09766:intron | 5.0% |
| !!! | ATTTTTTTTTTTTTTTTTGA+GGG | - | chr5.1:5990423-5990442 | None:intergenic | 5.0% |
| !!! | TATTTTTTTTTTTTTTTTTG+AGG | - | chr5.1:5990424-5990443 | None:intergenic | 5.0% |
| !!! | TCATTAAAATTATTAATTTT+TGG | - | chr5.1:5989256-5989275 | None:intergenic | 5.0% |
| AGGCGCCAATCCATTTAAGC+AGG | + | chr5.1:5989866-5989885 | MS.gene09766:CDS | 50.0% | |
| CAAAAGAGAGCCTTGCGGTT+GGG | - | chr5.1:5991174-5991193 | None:intergenic | 50.0% | |
| CGCAAACTCCTGCATCACAT+CGG | - | chr5.1:5991580-5991599 | None:intergenic | 50.0% | |
| CGCCTCTAAATGATGGCAAC+AGG | - | chr5.1:5989851-5989870 | None:intergenic | 50.0% | |
| CGCTTTCTGGACCTCTATCA+TGG | - | chr5.1:5989531-5989550 | None:intergenic | 50.0% | |
| GACATGCACATTGGCCATTG+AGG | - | chr5.1:5991634-5991653 | None:intergenic | 50.0% | |
| GCCTCGAATGCAAATGGAAG+AGG | + | chr5.1:5988697-5988716 | MS.gene09766:CDS | 50.0% | |
| GGCATATACTAGGCAACTCG+AGG | - | chr5.1:5991613-5991632 | None:intergenic | 50.0% | |
| GGTCCTGCAACAGTATAGAG+AGG | - | chr5.1:5989334-5989353 | None:intergenic | 50.0% | |
| TCATTACACGGATGGCAGGA+TGG | + | chr5.1:5989368-5989387 | MS.gene09766:CDS | 50.0% | |
| TCCAGTTCCTTCCTAACCCA+TGG | + | chr5.1:5988316-5988335 | MS.gene09766:CDS | 50.0% | |
| TGCTGTTCTTGCATCAAGCC+AGG | + | chr5.1:5988799-5988818 | MS.gene09766:CDS | 50.0% | |
| ! | AACAGAGTGTTCAGGGCCAA+AGG | - | chr5.1:5991657-5991676 | None:intergenic | 50.0% |
| ! | ACAGAGTGTTCAGGGCCAAA+GGG | - | chr5.1:5991656-5991675 | None:intergenic | 50.0% |
| ! | AGGGGTACAACTCAGAAGGA+TGG | + | chr5.1:5991493-5991512 | MS.gene09766:intron | 50.0% |
| ! | CAGTGTCACTGTGGATGTCA+TGG | + | chr5.1:5991770-5991789 | MS.gene09766:CDS | 50.0% |
| ! | GGATTGGCGCCTCTAAATGA+TGG | - | chr5.1:5989858-5989877 | None:intergenic | 50.0% |
| ! | TTGCAGGGGTACAACTCAGA+AGG | + | chr5.1:5991489-5991508 | MS.gene09766:intron | 50.0% |
| !! | ACCATGGGTTAGGAAGGAAC+TGG | - | chr5.1:5988320-5988339 | None:intergenic | 50.0% |
| !!! | ATCTGGTTGGCCGCTTTTAG+TGG | + | chr5.1:5991138-5991157 | MS.gene09766:intron | 50.0% |
| CGCCCTCTCTATACTGTTGC+AGG | + | chr5.1:5989328-5989347 | MS.gene09766:intron | 55.0% | |
| GAATGTGAGGCTTCGCCGTA+AGG | + | chr5.1:5989902-5989921 | MS.gene09766:intron | 55.0% | |
| GCAAAAGAGAGCCTTGCGGT+TGG | - | chr5.1:5991175-5991194 | None:intergenic | 55.0% | |
| GCAGGATGGAAGACTTCCAG+TGG | + | chr5.1:5989382-5989401 | MS.gene09766:CDS | 55.0% | |
| GGCCAAAGGGACATGCACAT+TGG | - | chr5.1:5991643-5991662 | None:intergenic | 55.0% | |
| GGCCAATGTGCATGTCCCTT+TGG | + | chr5.1:5991638-5991657 | MS.gene09766:CDS | 55.0% | |
| GTGACTGAAGGACGTGATGC+TGG | + | chr5.1:5990097-5990116 | MS.gene09766:CDS | 55.0% | |
| TGTGAGAGCCGATGTGATGC+AGG | + | chr5.1:5991569-5991588 | MS.gene09766:CDS | 55.0% | |
| TGTTGGCAGGCCTTTGATGC+AGG | + | chr5.1:5990043-5990062 | MS.gene09766:intron | 55.0% | |
| ! | CTTGAGGCTCAGTGTCACTG+TGG | + | chr5.1:5991761-5991780 | MS.gene09766:CDS | 55.0% |
| AAGAGAGCCTTGCGGTTGGG+AGG | - | chr5.1:5991171-5991190 | None:intergenic | 60.0% | |
| AGAGAGCCTTGCGGTTGGGA+GGG | - | chr5.1:5991170-5991189 | None:intergenic | 60.0% | |
| AGTTTCCCCTCCCAACCGCA+AGG | + | chr5.1:5991161-5991180 | MS.gene09766:intron | 60.0% | |
| GAGAGCCTTGCGGTTGGGAG+GGG | - | chr5.1:5991169-5991188 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5988229 | 5991796 | 5988229 | ID=MS.gene09766 |
| chr5.1 | mRNA | 5988229 | 5991796 | 5988229 | ID=MS.gene09766.t1;Parent=MS.gene09766 |
| chr5.1 | exon | 5988229 | 5988360 | 5988229 | ID=MS.gene09766.t1.exon1;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5988229 | 5988360 | 5988229 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5988463 | 5988575 | 5988463 | ID=MS.gene09766.t1.exon2;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5988463 | 5988575 | 5988463 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5988670 | 5988820 | 5988670 | ID=MS.gene09766.t1.exon3;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5988670 | 5988820 | 5988670 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5989350 | 5989423 | 5989350 | ID=MS.gene09766.t1.exon4;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5989350 | 5989423 | 5989350 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5989525 | 5989684 | 5989525 | ID=MS.gene09766.t1.exon5;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5989525 | 5989684 | 5989525 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5989789 | 5989887 | 5989789 | ID=MS.gene09766.t1.exon6;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5989789 | 5989887 | 5989789 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5990052 | 5990138 | 5990052 | ID=MS.gene09766.t1.exon7;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5990052 | 5990138 | 5990052 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5990236 | 5990305 | 5990236 | ID=MS.gene09766.t1.exon8;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5990236 | 5990305 | 5990236 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| chr5.1 | exon | 5991495 | 5991796 | 5991495 | ID=MS.gene09766.t1.exon9;Parent=MS.gene09766.t1 |
| chr5.1 | CDS | 5991495 | 5991796 | 5991495 | ID=cds.MS.gene09766.t1;Parent=MS.gene09766.t1 |
| Gene Sequence |
| Protein sequence |
