Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21553.t1 | XP_013469244.1 | 96.9 | 741 | 23 | 0 | 1 | 741 | 1 | 741 | 0.00E+00 | 1164.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21553.t1 | Q9ZVT8 | 31.8 | 803 | 450 | 18 | 21 | 737 | 29 | 819 | 3.6e-76 | 287.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21553.t1 | G7I2V7 | 96.9 | 741 | 23 | 0 | 1 | 741 | 26 | 766 | 0.0e+00 | 1164.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene21553 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene049190 | MS.gene21553 | 0.806972 | 6.34E-50 | -1.69E-46 |
| MS.gene049255 | MS.gene21553 | 0.831676 | 1.46E-55 | -1.69E-46 |
| MS.gene049341 | MS.gene21553 | 0.84188 | 3.63E-58 | -1.69E-46 |
| MS.gene050020 | MS.gene21553 | 0.805789 | 1.13E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene21553 | 0.848854 | 4.70E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene21553 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene21553 | 0.830062 | 3.63E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene21553 | 0.801913 | 7.19E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene21553 | 0.831413 | 1.69E-55 | -1.69E-46 |
| MS.gene052020 | MS.gene21553 | 0.814999 | 1.16E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene21553 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene21553 | 0.823591 | 1.28E-53 | -1.69E-46 |
| MS.gene052612 | MS.gene21553 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene21553 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene21553 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene21553 | 0.804896 | 1.73E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene21553 | 0.826378 | 2.80E-54 | -1.69E-46 |
| MS.gene053541 | MS.gene21553 | 0.816601 | 5.08E-52 | -1.69E-46 |
| MS.gene053542 | MS.gene21553 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene21553 | 0.855894 | 4.64E-62 | -1.69E-46 |
| MS.gene055890 | MS.gene21553 | 0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene21553 | 0.846778 | 1.75E-59 | -1.69E-46 |
| MS.gene056760 | MS.gene21553 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene05712 | MS.gene21553 | 0.813686 | 2.26E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene21553 | 0.811838 | 5.73E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene21553 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene21553 | 0.806002 | 1.02E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene21553 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene21553 | 0.883513 | 4.21E-71 | -1.69E-46 |
| MS.gene059842 | MS.gene21553 | 0.805762 | 1.14E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene21553 | 0.831405 | 1.70E-55 | -1.69E-46 |
| MS.gene060194 | MS.gene21553 | 0.805953 | 1.04E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene21553 | 0.830852 | 2.32E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21553.t1 | MTR_1g089740 | 97.166 | 741 | 21 | 0 | 1 | 741 | 1 | 741 | 0.0 | 1478 |
| MS.gene21553.t1 | MTR_1g089740 | 97.166 | 741 | 21 | 0 | 1 | 741 | 26 | 766 | 0.0 | 1477 |
| MS.gene21553.t1 | MTR_2g020870 | 33.844 | 783 | 395 | 20 | 71 | 737 | 102 | 877 | 3.54e-112 | 360 |
| MS.gene21553.t1 | MTR_2g020870 | 31.687 | 587 | 311 | 17 | 71 | 568 | 102 | 687 | 4.67e-64 | 228 |
| MS.gene21553.t1 | MTR_1g012335 | 66.272 | 169 | 18 | 2 | 125 | 293 | 1 | 130 | 1.39e-55 | 191 |
| MS.gene21553.t1 | MTR_4g098560 | 26.884 | 398 | 269 | 6 | 357 | 733 | 334 | 730 | 2.28e-30 | 128 |
| MS.gene21553.t1 | MTR_4g098560 | 32.584 | 178 | 77 | 6 | 52 | 207 | 64 | 220 | 1.63e-14 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21553.t1 | AT1G03365 | 36.173 | 810 | 405 | 21 | 21 | 737 | 29 | 819 | 2.44e-127 | 399 |
| MS.gene21553.t1 | AT1G03365 | 36.173 | 810 | 405 | 21 | 21 | 737 | 29 | 819 | 2.44e-127 | 399 |
| MS.gene21553.t1 | AT4G03000 | 35.075 | 804 | 413 | 24 | 21 | 737 | 30 | 811 | 8.29e-120 | 379 |
| MS.gene21553.t1 | AT4G03000 | 35.075 | 804 | 413 | 24 | 21 | 737 | 30 | 811 | 8.29e-120 | 379 |
| MS.gene21553.t1 | AT4G03000 | 32.905 | 623 | 326 | 19 | 21 | 573 | 30 | 630 | 1.53e-72 | 249 |
| MS.gene21553.t1 | AT4G03000 | 32.905 | 623 | 326 | 19 | 21 | 573 | 30 | 630 | 1.53e-72 | 249 |
| MS.gene21553.t1 | AT4G03000 | 32.905 | 623 | 326 | 19 | 21 | 573 | 30 | 630 | 2.37e-72 | 250 |
| MS.gene21553.t1 | AT4G03000 | 32.905 | 623 | 326 | 19 | 21 | 573 | 30 | 630 | 4.53e-72 | 248 |
| MS.gene21553.t1 | AT2G35330 | 29.191 | 346 | 223 | 4 | 406 | 733 | 390 | 731 | 7.39e-34 | 139 |
| MS.gene21553.t1 | AT2G35330 | 35.632 | 174 | 85 | 6 | 56 | 220 | 86 | 241 | 3.57e-17 | 86.7 |
| MS.gene21553.t1 | AT2G35330 | 29.191 | 346 | 223 | 4 | 406 | 733 | 363 | 704 | 8.30e-34 | 139 |
| MS.gene21553.t1 | AT2G35330 | 35.632 | 174 | 85 | 6 | 56 | 220 | 59 | 214 | 2.48e-17 | 87.0 |
| MS.gene21553.t1 | AT1G32530 | 27.035 | 344 | 229 | 6 | 408 | 733 | 365 | 704 | 3.01e-24 | 108 |
| MS.gene21553.t1 | AT1G32530 | 32.075 | 159 | 93 | 4 | 57 | 206 | 46 | 198 | 2.41e-12 | 70.9 |
Find 176 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTGATGTAAACTCTTTA+TGG | 0.161953 | 1.1:+65682020 | None:intergenic |
| CACAGATGGAGTACTTATTT+TGG | 0.170025 | 1.1:+65679270 | None:intergenic |
| ATCAAGAAGGTTGTTGATTT+AGG | 0.243477 | 1.1:-65682505 | MS.gene21553:CDS |
| AGCTTCGATTCAGCGGAATT+AGG | 0.251314 | 1.1:-65682652 | MS.gene21553:CDS |
| CTACTGCTGCCCAAGAAATT+TGG | 0.257158 | 1.1:+65679012 | None:intergenic |
| GGACTTACTGATGAGTAATT+TGG | 0.257637 | 1.1:-65682548 | MS.gene21553:CDS |
| GTAGGACCACCATCGAATTT+AGG | 0.260424 | 1.1:-65679042 | MS.gene21553:CDS |
| CACTTCTTCCATACTCATTC+TGG | 0.283048 | 1.1:-65681345 | MS.gene21553:CDS |
| AGGATTCATGCCAAATTTCT+TGG | 0.286335 | 1.1:-65679022 | MS.gene21553:CDS |
| TACCTGCATAACCTTCTTAT+TGG | 0.286548 | 1.1:+65681526 | None:intergenic |
| CTTGCCCAAAGCCTCATTAA+AGG | 0.287064 | 1.1:+65681643 | None:intergenic |
| TATTCCCTTTAATGAGGCTT+TGG | 0.297007 | 1.1:-65681648 | MS.gene21553:CDS |
| GACTGAACATTTAACTTTGA+TGG | 0.306629 | 1.1:+65682139 | None:intergenic |
| CCTTCATCCCTTGCTTCTCA+TGG | 0.314057 | 1.1:+65679077 | None:intergenic |
| ATTACAGGGTAGAGTGAAAA+AGG | 0.314098 | 1.1:-65679482 | MS.gene21553:intron |
| GGCAAAGCGGGTGTTAAATT+AGG | 0.314606 | 1.1:-65681956 | MS.gene21553:CDS |
| CTTTGCCTCCAGAATGAGTA+TGG | 0.314804 | 1.1:+65681337 | None:intergenic |
| TTGCGGATTTGTAAATTCAT+AGG | 0.322883 | 1.1:+65682675 | None:intergenic |
| GCTTCGATTCAGCGGAATTA+GGG | 0.329207 | 1.1:-65682651 | MS.gene21553:CDS |
| CCCGCTTTGCCACAAGCTTT+AGG | 0.332600 | 1.1:+65681968 | None:intergenic |
| CCACCACTCAGTTGACCTTC+TGG | 0.338744 | 1.1:+65682202 | None:intergenic |
| TTCCACCAGCTGGTTTGTCT+TGG | 0.343705 | 1.1:+65679203 | None:intergenic |
| TAGATTCTGATTTACTTTCC+TGG | 0.344878 | 1.1:+65682071 | None:intergenic |
| TCCACCAGCTGGTTTGTCTT+GGG | 0.350976 | 1.1:+65679204 | None:intergenic |
| GCAGTTACTGCATTATAGTT+TGG | 0.354061 | 1.1:-65682329 | MS.gene21553:CDS |
| CGCTTCAATCTTCCACCAGC+TGG | 0.354227 | 1.1:+65679193 | None:intergenic |
| ATCTCGAGCACAAGAATTGC+AGG | 0.366277 | 1.1:-65681576 | MS.gene21553:CDS |
| TCCGCTGAATCGAAGCTTTG+CGG | 0.370291 | 1.1:+65682658 | None:intergenic |
| TATTATAATGGCTGAAGAAA+TGG | 0.381498 | 1.1:-65682809 | MS.gene21553:CDS |
| ATTCCCTTTAATGAGGCTTT+GGG | 0.387334 | 1.1:-65681647 | MS.gene21553:CDS |
| AAGAGTTTACATCAGTGCTT+AGG | 0.388024 | 1.1:-65682015 | MS.gene21553:CDS |
| TCTTCAATGGTTACCGAAGA+TGG | 0.388812 | 1.1:-65682727 | MS.gene21553:CDS |
| TTTGCAGCGCTACCTCCTTC+GGG | 0.396787 | 1.1:+65681779 | None:intergenic |
| TGAAGCAATGTGGGAGTTGC+TGG | 0.403989 | 1.1:-65682257 | MS.gene21553:CDS |
| CAGTCAAGAAATGGCTGAAA+TGG | 0.412394 | 1.1:-65682476 | MS.gene21553:CDS |
| AATGTTCAGTCTGATATGAT+TGG | 0.413548 | 1.1:-65682127 | MS.gene21553:CDS |
| CATTGCTTCAGTTACTGTTA+AGG | 0.415267 | 1.1:+65682270 | None:intergenic |
| GATCGACAAGGGTATTATAA+TGG | 0.415815 | 1.1:-65682821 | MS.gene21553:CDS |
| ACTGAACATTTAACTTTGAT+GGG | 0.418576 | 1.1:+65682140 | None:intergenic |
| TTGCATCAGGAGATAGAAAA+GGG | 0.421960 | 1.1:-65681137 | MS.gene21553:CDS |
| TTGTACAGAAGAACAACATT+TGG | 0.424492 | 1.1:-65682620 | MS.gene21553:CDS |
| CAACACACTGAATACTTTGA+AGG | 0.424983 | 1.1:-65682398 | MS.gene21553:CDS |
| AGGTGCAAAGCTGGAATGAC+TGG | 0.426147 | 1.1:-65681550 | MS.gene21553:CDS |
| GATTCAGCGGAATTAGGGTT+AGG | 0.429023 | 1.1:-65682646 | MS.gene21553:CDS |
| TCATGGAGCTCATTGCAATT+CGG | 0.431116 | 1.1:+65679094 | None:intergenic |
| CAACCGACCTCTCCTCTGAT+AGG | 0.432294 | 1.1:+65679149 | None:intergenic |
| TGCAGGATGAGGTGCAAAGC+TGG | 0.432702 | 1.1:-65681559 | MS.gene21553:CDS |
| AGATTCTGATTTACTTTCCT+GGG | 0.435378 | 1.1:+65682072 | None:intergenic |
| AGATAAGCTTCGCAAGCTTC+AGG | 0.443538 | 1.1:-65681501 | MS.gene21553:CDS |
| ATTCTCCTCTTCCGCTCAAA+AGG | 0.445328 | 1.1:-65681690 | MS.gene21553:CDS |
| TTGCCCAAAGCCTCATTAAA+GGG | 0.446677 | 1.1:+65681644 | None:intergenic |
| TGTACAGAAGAACAACATTT+GGG | 0.449983 | 1.1:-65682619 | MS.gene21553:CDS |
| CTTGCATCAGGAGATAGAAA+AGG | 0.452299 | 1.1:-65681138 | MS.gene21553:CDS |
| AGATGATGAGTCTTCTTCAA+TGG | 0.452751 | 1.1:-65682740 | MS.gene21553:CDS |
| ACAAAAGGAGTTAGTATAGC+AGG | 0.455522 | 1.1:-65681839 | MS.gene21553:CDS |
| TGGCTGAAATGGCCGTTTCA+AGG | 0.456420 | 1.1:-65682465 | MS.gene21553:CDS |
| GGATTCATGCCAAATTTCTT+GGG | 0.458310 | 1.1:-65679021 | MS.gene21553:CDS |
| CCTAAAGCTTGTGGCAAAGC+GGG | 0.460953 | 1.1:-65681968 | MS.gene21553:CDS |
| GCGGAAGAGGAGAATGGCTT+AGG | 0.464954 | 1.1:+65681698 | None:intergenic |
| TGCTGGTATTCCCTTTAATG+AGG | 0.474949 | 1.1:-65681654 | MS.gene21553:CDS |
| CACACTTAAAGAACCATCTT+CGG | 0.477233 | 1.1:+65682714 | None:intergenic |
| GTAGATGTTGCATCCTTTGT+GGG | 0.480943 | 1.1:+65681752 | None:intergenic |
| TTCTGATTTGGAACTTCAGA+TGG | 0.484458 | 1.1:+65681884 | None:intergenic |
| AAGGTTCAAAATTACTGTGC+TGG | 0.484913 | 1.1:-65681671 | MS.gene21553:CDS |
| AATCATCATTGGTTGAAATA+CGG | 0.485214 | 1.1:+65681810 | None:intergenic |
| AATTCCACATACCTCAGTAT+TGG | 0.485452 | 1.1:+65681100 | None:intergenic |
| AGAGATGCTCGGTGTACTCC+GGG | 0.487036 | 1.1:-65682305 | MS.gene21553:CDS |
| AAAGTTAGCTAACTTGCATC+AGG | 0.490897 | 1.1:-65681150 | MS.gene21553:CDS |
| TGCGGATTTGTAAATTCATA+GGG | 0.493953 | 1.1:+65682676 | None:intergenic |
| GGAAAGCTTACAAGCGTAAG+TGG | 0.494729 | 1.1:-65681935 | MS.gene21553:CDS |
| AGAGTTTACATCAGTGCTTA+GGG | 0.496266 | 1.1:-65682014 | MS.gene21553:CDS |
| TGTTCGTCCTTCTCATCCCG+TGG | 0.502489 | 1.1:+65681614 | None:intergenic |
| ACAAGCCCAGTCGTGGAAAA+CGG | 0.503942 | 1.1:-65681213 | MS.gene21553:CDS |
| AGGAGGCTACAGTCAAGAAA+TGG | 0.504693 | 1.1:-65682485 | MS.gene21553:CDS |
| AAATCTGAGACGGTGACGAC+GGG | 0.504966 | 1.1:-65679232 | MS.gene21553:CDS |
| GGGTAAAGCTGAATCATCAT+TGG | 0.505790 | 1.1:+65681799 | None:intergenic |
| CCATGAGAAGCAAGGGATGA+AGG | 0.505923 | 1.1:-65679077 | MS.gene21553:CDS |
| AAAACTGTTGGTTCTGAACA+AGG | 0.506590 | 1.1:-65682784 | MS.gene21553:CDS |
| AGTAGATGTTGCATCCTTTG+TGG | 0.507886 | 1.1:+65681751 | None:intergenic |
| AACACACTGAATACTTTGAA+GGG | 0.509898 | 1.1:-65682397 | MS.gene21553:CDS |
| CGTGGCTCCTCAAATACAAA+AGG | 0.515636 | 1.1:-65681854 | MS.gene21553:CDS |
| TGATTTGGAACTTCAGATGG+TGG | 0.515862 | 1.1:+65681887 | None:intergenic |
| CGAAGATGGTTCTTTAAGTG+TGG | 0.517533 | 1.1:-65682713 | MS.gene21553:CDS |
| GCTGTGCTAAGACTAAAATC+TGG | 0.520602 | 1.1:-65679295 | MS.gene21553:CDS |
| AGGGTCTCCTTCTGTGTACA+AGG | 0.521448 | 1.1:+65682438 | None:intergenic |
| AAGAAGGTTGTTGATTTAGG+AGG | 0.522918 | 1.1:-65682502 | MS.gene21553:CDS |
| TCCGCAAAGCTTCGATTCAG+CGG | 0.523570 | 1.1:-65682659 | MS.gene21553:CDS |
| CACAAAACCTGATGCGCACA+TGG | 0.524231 | 1.1:+65679118 | None:intergenic |
| GGCAAGTTATCAACAAGCAC+TGG | 0.524731 | 1.1:-65681258 | MS.gene21553:CDS |
| GGCCAATAAGAAGGTTATGC+AGG | 0.527394 | 1.1:-65681528 | MS.gene21553:CDS |
| TGCTTCAGTTACTGTTAAGG+AGG | 0.527494 | 1.1:+65682273 | None:intergenic |
| TAGAGATGCTCGGTGTACTC+CGG | 0.530161 | 1.1:-65682306 | MS.gene21553:CDS |
| GAAGAAATGGATAAAACTGT+TGG | 0.535165 | 1.1:-65682796 | MS.gene21553:CDS |
| ACTAGCTGCCTTCTTTCTGA+CGG | 0.543071 | 1.1:+65679366 | None:intergenic |
| TGAAGATTGGAAGGATCCTA+TGG | 0.544100 | 1.1:-65682584 | MS.gene21553:CDS |
| TCGATGGTGGTCCTACATGA+AGG | 0.545025 | 1.1:+65679049 | None:intergenic |
| GGAGGATGCCGTCAGAAAGA+AGG | 0.545930 | 1.1:-65679374 | MS.gene21553:CDS |
| GTCGTTGGCTGAAAAGTCAA+TGG | 0.547386 | 1.1:-65681279 | MS.gene21553:CDS |
| GAATGACTGGGCCAATAAGA+AGG | 0.549315 | 1.1:-65681537 | MS.gene21553:CDS |
| AGCTGGTGGAAGATTGAAGC+GGG | 0.553151 | 1.1:-65679191 | MS.gene21553:CDS |
| GAAGGCAGCTAGTCAACTGC+AGG | 0.553567 | 1.1:-65679356 | MS.gene21553:CDS |
| GGCTCCCAAGACAAACCAGC+TGG | 0.554984 | 1.1:-65679208 | MS.gene21553:CDS |
| GTACAAGGACTTCCTTGAAA+CGG | 0.565468 | 1.1:+65682453 | None:intergenic |
| GCTTCAGTTACTGTTAAGGA+GGG | 0.567510 | 1.1:+65682274 | None:intergenic |
| GTTTATCCCACGGGATGAGA+AGG | 0.567819 | 1.1:-65681621 | MS.gene21553:CDS |
| GGCATGAATCCTAAATTCGA+TGG | 0.569361 | 1.1:+65679033 | None:intergenic |
| GTGTGCTCGAGGTTGAAGAT+TGG | 0.571035 | 1.1:-65682597 | MS.gene21553:CDS |
| AGCACAAGAATTGCAGGATG+AGG | 0.572239 | 1.1:-65681570 | MS.gene21553:CDS |
| CAGAATGAGTATGGAAGAAG+TGG | 0.572958 | 1.1:+65681346 | None:intergenic |
| TAGTCAACTGCAGGAATATG+TGG | 0.573830 | 1.1:-65679347 | MS.gene21553:CDS |
| TAGAAGAGAATGCTGAGAAG+AGG | 0.574213 | 1.1:-65681421 | MS.gene21553:CDS |
| TTTGGGCAAGTTTATCCCAC+GGG | 0.575708 | 1.1:-65681630 | MS.gene21553:CDS |
| AACAGTAACTGAAGCAATGT+GGG | 0.577399 | 1.1:-65682266 | MS.gene21553:CDS |
| CTGAATACTTTGAAGGGGAA+AGG | 0.578346 | 1.1:-65682391 | MS.gene21553:CDS |
| CTTTGGGCAAGTTTATCCCA+CGG | 0.580478 | 1.1:-65681631 | MS.gene21553:CDS |
| GTTCGTCCTTCTCATCCCGT+GGG | 0.582182 | 1.1:+65681615 | None:intergenic |
| CACCAACTCTTTCTCTAGCA+AGG | 0.583844 | 1.1:+65681310 | None:intergenic |
| ATGAAAGAACCTAAAGCTTG+TGG | 0.584438 | 1.1:-65681977 | MS.gene21553:CDS |
| TATAGTTTGGTAGAGATGCT+CGG | 0.585826 | 1.1:-65682316 | MS.gene21553:CDS |
| TCCTATGGCAACTCAGCTTG+AGG | 0.585966 | 1.1:-65682569 | MS.gene21553:CDS |
| ACAACATTTGGGTGTGCTCG+AGG | 0.585997 | 1.1:-65682608 | MS.gene21553:CDS |
| AGATGGTTCTTTAAGTGTGG+AGG | 0.588427 | 1.1:-65682710 | MS.gene21553:CDS |
| TGAAGGAATGCCCTTCATGT+AGG | 0.589860 | 1.1:-65679060 | MS.gene21553:CDS |
| CTGAACATTTAACTTTGATG+GGG | 0.589971 | 1.1:+65682141 | None:intergenic |
| CAAAATAAGTACTCCATCTG+TGG | 0.591010 | 1.1:-65679269 | MS.gene21553:CDS |
| CCAGTCGTGGAAAACGGAGT+TGG | 0.591376 | 1.1:-65681207 | MS.gene21553:CDS |
| CAGCATGGTAAAGCTAGAGA+AGG | 0.592676 | 1.1:-65679323 | MS.gene21553:CDS |
| GAAATCTGAGACGGTGACGA+CGG | 0.593570 | 1.1:-65679233 | MS.gene21553:CDS |
| ATGAGCTCCATGAGAAGCAA+GGG | 0.594437 | 1.1:-65679084 | MS.gene21553:CDS |
| AGGAAGTCCTTGTACACAGA+AGG | 0.597559 | 1.1:-65682445 | MS.gene21553:CDS |
| TCTGAGACGGTGACGACGGG+GGG | 0.600103 | 1.1:-65679229 | MS.gene21553:CDS |
| AACTTTCACAAATATCTCCC+AGG | 0.600719 | 1.1:-65682089 | MS.gene21553:CDS |
| ACACGAGTCATTTCACCAGA+AGG | 0.600907 | 1.1:-65682217 | MS.gene21553:CDS |
| TAAAGTATGCAGCCTGTGTG+AGG | 0.602168 | 1.1:+65679437 | None:intergenic |
| GTTGGTGTCTGCTAAGTCGT+TGG | 0.602233 | 1.1:-65681294 | MS.gene21553:CDS |
| CTATTCAACAAGCCCAGTCG+TGG | 0.607936 | 1.1:-65681220 | MS.gene21553:CDS |
| TGTAGACAATATTTGTGAGA+GGG | 0.609208 | 1.1:+65682419 | None:intergenic |
| CGCTGCAAAATTACCCACAA+AGG | 0.609619 | 1.1:-65681765 | MS.gene21553:CDS |
| GATTCAGCTTTACCCGAAGG+AGG | 0.610637 | 1.1:-65681791 | MS.gene21553:CDS |
| GGATTTGTAAATTCATAGGG+AGG | 0.614022 | 1.1:+65682679 | None:intergenic |
| GTCCTTGCTAGAGAAAGAGT+TGG | 0.614761 | 1.1:-65681312 | MS.gene21553:CDS |
| AATGAGCTCCATGAGAAGCA+AGG | 0.618473 | 1.1:-65679085 | MS.gene21553:CDS |
| GCTCGAGGTTGAAGATTGGA+AGG | 0.618729 | 1.1:-65682593 | MS.gene21553:CDS |
| CTCTGAAGTGGAGAATGCCA+TGG | 0.618759 | 1.1:-65681396 | MS.gene21553:CDS |
| GCAGGAATATGTGGACAGCA+TGG | 0.623496 | 1.1:-65679338 | MS.gene21553:CDS |
| TGAGAAGAGGATCTCTGAAG+TGG | 0.625673 | 1.1:-65681408 | MS.gene21553:CDS |
| CGATGGTGGTCCTACATGAA+GGG | 0.627258 | 1.1:+65679050 | None:intergenic |
| AGCACTCATGAAAGCTGAGG+AGG | 0.628540 | 1.1:-65679392 | MS.gene21553:CDS |
| TCCTCAAGCTGAGTTGCCAT+AGG | 0.629481 | 1.1:+65682568 | None:intergenic |
| TCCCAAGACAAACCAGCTGG+TGG | 0.630501 | 1.1:-65679205 | MS.gene21553:CDS |
| GATGATTCAGCTTTACCCGA+AGG | 0.631923 | 1.1:-65681794 | MS.gene21553:CDS |
| ATCTGAGACGGTGACGACGG+GGG | 0.633833 | 1.1:-65679230 | MS.gene21553:CDS |
| TTCTTCCATACTCATTCTGG+AGG | 0.633921 | 1.1:-65681342 | MS.gene21553:CDS |
| ACACACTGAATACTTTGAAG+GGG | 0.634678 | 1.1:-65682396 | MS.gene21553:CDS |
| AGAAAACAAGAAATCTGAGA+CGG | 0.635352 | 1.1:-65679242 | MS.gene21553:CDS |
| ACCTAAAGCTTGTGGCAAAG+CGG | 0.636840 | 1.1:-65681969 | MS.gene21553:CDS |
| GTGCCTATCAGAGGAGAGGT+CGG | 0.640007 | 1.1:-65679152 | MS.gene21553:CDS |
| TAACAGTAACTGAAGCAATG+TGG | 0.641192 | 1.1:-65682267 | MS.gene21553:CDS |
| TGAACATTTAACTTTGATGG+GGG | 0.642090 | 1.1:+65682142 | None:intergenic |
| TGAAGCACTCATGAAAGCTG+AGG | 0.649898 | 1.1:-65679395 | MS.gene21553:CDS |
| GATTTGTAAATTCATAGGGA+GGG | 0.650733 | 1.1:+65682680 | None:intergenic |
| AATCTGAGACGGTGACGACG+GGG | 0.653084 | 1.1:-65679231 | MS.gene21553:CDS |
| ATGAATCCTAAATTCGATGG+TGG | 0.659018 | 1.1:+65679036 | None:intergenic |
| TCATGTGCCTATCAGAGGAG+AGG | 0.661659 | 1.1:-65679156 | MS.gene21553:CDS |
| TTGTAGACAATATTTGTGAG+AGG | 0.662345 | 1.1:+65682418 | None:intergenic |
| GGTGCAAAGCTGGAATGACT+GGG | 0.663688 | 1.1:-65681549 | MS.gene21553:CDS |
| GTAGATGGAGGTGATCGACA+AGG | 0.664889 | 1.1:-65682833 | None:intergenic |
| TAGATGGAGGTGATCGACAA+GGG | 0.666552 | 1.1:-65682832 | MS.gene21553:CDS |
| TAAGCTTCGCAAGCTTCAGG+CGG | 0.676302 | 1.1:-65681498 | MS.gene21553:CDS |
| CCAGAAGGTCAACTGAGTGG+TGG | 0.679750 | 1.1:-65682202 | MS.gene21553:CDS |
| TGCATCAGGAGATAGAAAAG+GGG | 0.681951 | 1.1:-65681136 | MS.gene21553:CDS |
| TCACCAGAAGGTCAACTGAG+TGG | 0.694120 | 1.1:-65682205 | MS.gene21553:CDS |
| GTGTGTCATGTGCCTATCAG+AGG | 0.697894 | 1.1:-65679161 | MS.gene21553:CDS |
| CAGCTGGTGGAAGATTGAAG+CGG | 0.698320 | 1.1:-65679192 | MS.gene21553:CDS |
| CCAAATCAGAAAATGAAACG+TGG | 0.702226 | 1.1:-65681872 | MS.gene21553:CDS |
| AAATCTTCTAGCCAATACTG+AGG | 0.732844 | 1.1:-65681111 | MS.gene21553:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATTTGACTATT+CGG | + | chr1.1:65680947-65680966 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAAAGTTTA+TGG | - | chr1.1:65681811-65681830 | MS.gene21553:CDS | 10.0% |
| !!! | AAACTTTTTTTTTTTTGAAA+CGG | + | chr1.1:65681810-65681829 | None:intergenic | 10.0% |
| !!! | AAATTTTTTGATTAGTTTAT+TGG | - | chr1.1:65682106-65682125 | MS.gene21553:CDS | 10.0% |
| !!! | TTTATTAGTTTACATATACA+TGG | - | chr1.1:65681218-65681237 | MS.gene21553:CDS | 15.0% |
| !!! | TTTTTAGATTTACATATACA+TGG | - | chr1.1:65680963-65680982 | MS.gene21553:intron | 15.0% |
| !!! | AAAAAGTTTATGGTTTTATG+TGG | - | chr1.1:65681821-65681840 | MS.gene21553:CDS | 20.0% |
| !!! | ACTTCACAGTTTAATTTTTT+TGG | - | chr1.1:65681199-65681218 | MS.gene21553:CDS | 20.0% |
| !!! | ATGTTTTCACCATTTAAATA+AGG | + | chr1.1:65682341-65682360 | None:intergenic | 20.0% |
| !!! | CTTCACAGTTTAATTTTTTT+GGG | - | chr1.1:65681200-65681219 | MS.gene21553:CDS | 20.0% |
| !!! | TATGATTTCTGTTTTTATGA+TGG | - | chr1.1:65682270-65682289 | MS.gene21553:CDS | 20.0% |
| !!! | TGATTAGTTTATTGGTTTAT+AGG | - | chr1.1:65682114-65682133 | MS.gene21553:CDS | 20.0% |
| !!! | TTCACAGTTTAATTTTTTTG+GGG | - | chr1.1:65681456-65681475 | MS.gene21553:CDS | 20.0% |
| ! | AAAAAATTACAAGGGGAAAT+CGG | + | chr1.1:65681729-65681748 | None:intergenic | 25.0% |
| ! | AGTGTCAATTGTAAACAATT+TGG | + | chr1.1:65682296-65682315 | None:intergenic | 25.0% |
| ! | ATATATCATCATTTGTCCTA+TGG | + | chr1.1:65682069-65682088 | None:intergenic | 25.0% |
| ! | GTGGAGAAAAAAAATTACAA+GGG | + | chr1.1:65681737-65681756 | None:intergenic | 25.0% |
| ! | TAAAAATTTGACTATTCGGA+AGG | + | chr1.1:65680943-65680962 | None:intergenic | 25.0% |
| ! | TAAATGGTGAAAACATTACA+GGG | - | chr1.1:65682345-65682364 | MS.gene21553:CDS | 25.0% |
| ! | TATTATAATGGCTGAAGAAA+TGG | - | chr1.1:65679032-65679051 | MS.gene21553:CDS | 25.0% |
| ! | TGGAGAAAAAAAATTACAAG+GGG | + | chr1.1:65681736-65681755 | None:intergenic | 25.0% |
| ! | TTAAATGGTGAAAACATTAC+AGG | - | chr1.1:65682344-65682363 | MS.gene21553:CDS | 25.0% |
| !! | AATCATCATTGGTTGAAATA+CGG | + | chr1.1:65680034-65680053 | None:intergenic | 25.0% |
| !! | ACTGAACATTTAACTTTGAT+GGG | + | chr1.1:65679704-65679723 | None:intergenic | 25.0% |
| !! | ATGCTACTTCCTTATTTAAA+TGG | - | chr1.1:65682329-65682348 | MS.gene21553:CDS | 25.0% |
| !! | GCTTGTTGGTTAATAATATT+TGG | - | chr1.1:65681784-65681803 | MS.gene21553:CDS | 25.0% |
| !! | TTTTAGTAATGCTATCAAGA+AGG | - | chr1.1:65679323-65679342 | MS.gene21553:CDS | 25.0% |
| !!! | CTGGTTGAATTCATTTTAAT+TGG | + | chr1.1:65681128-65681147 | None:intergenic | 25.0% |
| !!! | TTGCTTTTGATTATTTTCCA+TGG | + | chr1.1:65680465-65680484 | None:intergenic | 25.0% |
| !!! | TTTTCTGTTTCTGTTTTTTG+TGG | - | chr1.1:65681485-65681504 | MS.gene21553:CDS | 25.0% |
| AAAGTAAAAACAGTATGCAC+AGG | + | chr1.1:65681917-65681936 | None:intergenic | 30.0% | |
| AACACACTGAATACTTTGAA+GGG | - | chr1.1:65679444-65679463 | MS.gene21553:CDS | 30.0% | |
| AATGTTCAGTCTGATATGAT+TGG | - | chr1.1:65679714-65679733 | MS.gene21553:intron | 30.0% | |
| AGAAAACAAGAAATCTGAGA+CGG | - | chr1.1:65682599-65682618 | MS.gene21553:CDS | 30.0% | |
| AGATTCTGATTTACTTTCCT+GGG | + | chr1.1:65679772-65679791 | None:intergenic | 30.0% | |
| ATATACCATCATTTGTCCTA+TGG | + | chr1.1:65681174-65681193 | None:intergenic | 30.0% | |
| ATCTGATTGAGCTAAAGTAT+AGG | - | chr1.1:65681855-65681874 | MS.gene21553:CDS | 30.0% | |
| CAGTTAGTAATTTATCACTC+AGG | - | chr1.1:65681887-65681906 | MS.gene21553:CDS | 30.0% | |
| GAAGAAATGGATAAAACTGT+TGG | - | chr1.1:65679045-65679064 | MS.gene21553:CDS | 30.0% | |
| GATTTGTAAATTCATAGGGA+GGG | + | chr1.1:65679164-65679183 | None:intergenic | 30.0% | |
| GGTGGAGAAAAAAAATTACA+AGG | + | chr1.1:65681738-65681757 | None:intergenic | 30.0% | |
| TACCTACTCTATTATTCTGA+CGG | - | chr1.1:65680856-65680875 | MS.gene21553:intron | 30.0% | |
| TAGATTCTGATTTACTTTCC+TGG | + | chr1.1:65679773-65679792 | None:intergenic | 30.0% | |
| TGAGTCAATAATTATCACTC+AGG | - | chr1.1:65682184-65682203 | MS.gene21553:CDS | 30.0% | |
| TGCGGATTTGTAAATTCATA+GGG | + | chr1.1:65679168-65679187 | None:intergenic | 30.0% | |
| TGTACAGAAGAACAACATTT+GGG | - | chr1.1:65679222-65679241 | MS.gene21553:CDS | 30.0% | |
| TGTAGACAATATTTGTGAGA+GGG | + | chr1.1:65679425-65679444 | None:intergenic | 30.0% | |
| TTGCGGATTTGTAAATTCAT+AGG | + | chr1.1:65679169-65679188 | None:intergenic | 30.0% | |
| TTGTACAGAAGAACAACATT+TGG | - | chr1.1:65679221-65679240 | MS.gene21553:CDS | 30.0% | |
| TTGTAGACAATATTTGTGAG+AGG | + | chr1.1:65679426-65679445 | None:intergenic | 30.0% | |
| TTGTCCTATGGAAAATCTAA+AGG | + | chr1.1:65681162-65681181 | None:intergenic | 30.0% | |
| ! | ACTAACTCCTTTTGTATTTG+AGG | + | chr1.1:65679997-65680016 | None:intergenic | 30.0% |
| ! | ATTTTCCATAGGACAAATGA+TGG | - | chr1.1:65681166-65681185 | MS.gene21553:CDS | 30.0% |
| ! | CATTCCTTTAGATTTTCCAT+AGG | - | chr1.1:65681155-65681174 | MS.gene21553:CDS | 30.0% |
| ! | CTGAACATTTAACTTTGATG+GGG | + | chr1.1:65679703-65679722 | None:intergenic | 30.0% |
| ! | GACTGAACATTTAACTTTGA+TGG | + | chr1.1:65679705-65679724 | None:intergenic | 30.0% |
| ! | GTAATTTTGAACCTTTTGAG+CGG | + | chr1.1:65680165-65680184 | None:intergenic | 30.0% |
| ! | TGAACATTTAACTTTGATGG+GGG | + | chr1.1:65679702-65679721 | None:intergenic | 30.0% |
| !! | ATCAAGAAGGTTGTTGATTT+AGG | - | chr1.1:65679336-65679355 | MS.gene21553:CDS | 30.0% |
| !!! | TCTTAGGAGTGGTTTTTTAA+GGG | - | chr1.1:65681672-65681691 | MS.gene21553:CDS | 30.0% |
| !!! | TTCTTAGGAGTGGTTTTTTA+AGG | - | chr1.1:65681671-65681690 | MS.gene21553:CDS | 30.0% |
| !!! | TTTTGAAATACAAAGTCTGC+AGG | + | chr1.1:65679486-65679505 | None:intergenic | 30.0% |
| !!! | TTTTTTAACAGTGAGACTGA+AGG | + | chr1.1:65681060-65681079 | None:intergenic | 30.0% |
| AAATCTTCTAGCCAATACTG+AGG | - | chr1.1:65680730-65680749 | MS.gene21553:intron | 35.0% | |
| AACAGTAACTGAAGCAATGT+GGG | - | chr1.1:65679575-65679594 | MS.gene21553:intron | 35.0% | |
| AACTTTCACAAATATCTCCC+AGG | - | chr1.1:65679752-65679771 | MS.gene21553:intron | 35.0% | |
| AAGAGTTTACATCAGTGCTT+AGG | - | chr1.1:65679826-65679845 | MS.gene21553:intron | 35.0% | |
| AAGGTTCAAAATTACTGTGC+TGG | - | chr1.1:65680170-65680189 | MS.gene21553:intron | 35.0% | |
| AATTCCACATACCTCAGTAT+TGG | + | chr1.1:65680744-65680763 | None:intergenic | 35.0% | |
| ACAAAAGGAGTTAGTATAGC+AGG | - | chr1.1:65680002-65680021 | MS.gene21553:intron | 35.0% | |
| ACCATGAGTGTTTAACTCAT+AGG | - | chr1.1:65681994-65682013 | MS.gene21553:CDS | 35.0% | |
| AGAGTTTACATCAGTGCTTA+GGG | - | chr1.1:65679827-65679846 | MS.gene21553:intron | 35.0% | |
| AGATGATGAGTCTTCTTCAA+TGG | - | chr1.1:65679101-65679120 | MS.gene21553:CDS | 35.0% | |
| AGGATTCATGCCAAATTTCT+TGG | - | chr1.1:65682819-65682838 | MS.gene21553:CDS | 35.0% | |
| ATAGGCACCTAAAAAAGACA+CGG | - | chr1.1:65680903-65680922 | MS.gene21553:intron | 35.0% | |
| ATGAAAGAACCTAAAGCTTG+TGG | - | chr1.1:65679864-65679883 | MS.gene21553:intron | 35.0% | |
| ATGAATCCTAAATTCGATGG+TGG | + | chr1.1:65682808-65682827 | None:intergenic | 35.0% | |
| ATGAGTTAAACACTCATGGT+TGG | + | chr1.1:65681994-65682013 | None:intergenic | 35.0% | |
| ATTACAGGGTAGAGTGAAAA+AGG | - | chr1.1:65682359-65682378 | MS.gene21553:CDS | 35.0% | |
| ATTCCCTTTAATGAGGCTTT+GGG | - | chr1.1:65680194-65680213 | MS.gene21553:intron | 35.0% | |
| CAAAATAAGTACTCCATCTG+TGG | - | chr1.1:65682572-65682591 | MS.gene21553:CDS | 35.0% | |
| CAACACACTGAATACTTTGA+AGG | - | chr1.1:65679443-65679462 | MS.gene21553:CDS | 35.0% | |
| CACACTTAAAGAACCATCTT+CGG | + | chr1.1:65679130-65679149 | None:intergenic | 35.0% | |
| CATTGCTTCAGTTACTGTTA+AGG | + | chr1.1:65679574-65679593 | None:intergenic | 35.0% | |
| CCAAATCAGAAAATGAAACG+TGG | - | chr1.1:65679969-65679988 | MS.gene21553:intron | 35.0% | |
| GCAGTTACTGCATTATAGTT+TGG | - | chr1.1:65679512-65679531 | MS.gene21553:intron | 35.0% | |
| GGACTTACTGATGAGTAATT+TGG | - | chr1.1:65679293-65679312 | MS.gene21553:CDS | 35.0% | |
| GGATTCATGCCAAATTTCTT+GGG | - | chr1.1:65682820-65682839 | MS.gene21553:CDS | 35.0% | |
| GGATTTGTAAATTCATAGGG+AGG | + | chr1.1:65679165-65679184 | None:intergenic | 35.0% | |
| GTCAGAATAATAGAGTAGGT+AGG | + | chr1.1:65680857-65680876 | None:intergenic | 35.0% | |
| TAACAGTAACTGAAGCAATG+TGG | - | chr1.1:65679574-65679593 | MS.gene21553:intron | 35.0% | |
| TACCTGCATAACCTTCTTAT+TGG | + | chr1.1:65680318-65680337 | None:intergenic | 35.0% | |
| TATAGTTTGGTAGAGATGCT+CGG | - | chr1.1:65679525-65679544 | MS.gene21553:intron | 35.0% | |
| TATTCCCTTTAATGAGGCTT+TGG | - | chr1.1:65680193-65680212 | MS.gene21553:intron | 35.0% | |
| TCTAAAGGAATGCAAAACAC+TGG | + | chr1.1:65681147-65681166 | None:intergenic | 35.0% | |
| TGAGCTAAAGTATAGGAACA+AGG | - | chr1.1:65681862-65681881 | MS.gene21553:CDS | 35.0% | |
| TGAGCTAAAGTATAGGAACA+GGG | - | chr1.1:65681862-65681881 | MS.gene21553:CDS | 35.0% | |
| TTGAGCTAAAGTATAGGAAC+AGG | - | chr1.1:65681861-65681880 | MS.gene21553:CDS | 35.0% | |
| TTGCATCAGGAGATAGAAAA+GGG | - | chr1.1:65680704-65680723 | MS.gene21553:intron | 35.0% | |
| ! | AAAGTTAGCTAACTTGCATC+AGG | - | chr1.1:65680691-65680710 | MS.gene21553:intron | 35.0% |
| ! | ACACACTGAATACTTTGAAG+GGG | - | chr1.1:65679445-65679464 | MS.gene21553:CDS | 35.0% |
| ! | CCACGTTTCATTTTCTGATT+TGG | + | chr1.1:65679972-65679991 | None:intergenic | 35.0% |
| ! | GCACTGATGTAAACTCTTTA+TGG | + | chr1.1:65679824-65679843 | None:intergenic | 35.0% |
| ! | TTGTTTTCTTTCACCACAGA+TGG | + | chr1.1:65682588-65682607 | None:intergenic | 35.0% |
| !! | AAAACTGTTGGTTCTGAACA+AGG | - | chr1.1:65679057-65679076 | MS.gene21553:CDS | 35.0% |
| !! | AAGAAGGTTGTTGATTTAGG+AGG | - | chr1.1:65679339-65679358 | MS.gene21553:CDS | 35.0% |
| !! | CACAGATGGAGTACTTATTT+TGG | + | chr1.1:65682574-65682593 | None:intergenic | 35.0% |
| !! | GATCGACAAGGGTATTATAA+TGG | - | chr1.1:65679020-65679039 | MS.gene21553:CDS | 35.0% |
| !! | TTCTGATTTGGAACTTCAGA+TGG | + | chr1.1:65679960-65679979 | None:intergenic | 35.0% |
| !!! | CTTAGGAGTGGTTTTTTAAG+GGG | - | chr1.1:65681673-65681692 | MS.gene21553:CDS | 35.0% |
| !!! | GAATGGCTTAGGTTTTGATT+TGG | + | chr1.1:65680135-65680154 | None:intergenic | 35.0% |
| !!! | GTTTAATTTTTTTGGGGTGC+TGG | - | chr1.1:65681462-65681481 | MS.gene21553:CDS | 35.0% |
| ACAGAAGCAATCAGCAACTA+AGG | + | chr1.1:65681588-65681607 | None:intergenic | 40.0% | |
| AGATGGTTCTTTAAGTGTGG+AGG | - | chr1.1:65679131-65679150 | MS.gene21553:CDS | 40.0% | |
| AGTAGATGTTGCATCCTTTG+TGG | + | chr1.1:65680093-65680112 | None:intergenic | 40.0% | |
| CACTTCTTCCATACTCATTC+TGG | - | chr1.1:65680496-65680515 | MS.gene21553:intron | 40.0% | |
| CAGAATGAGTATGGAAGAAG+TGG | + | chr1.1:65680498-65680517 | None:intergenic | 40.0% | |
| CAGTCAAGAAATGGCTGAAA+TGG | - | chr1.1:65679365-65679384 | MS.gene21553:CDS | 40.0% | |
| CGAAGATGGTTCTTTAAGTG+TGG | - | chr1.1:65679128-65679147 | MS.gene21553:CDS | 40.0% | |
| CTTGCATCAGGAGATAGAAA+AGG | - | chr1.1:65680703-65680722 | MS.gene21553:intron | 40.0% | |
| GACAGAAAAAATCCTCACAC+AGG | - | chr1.1:65682392-65682411 | MS.gene21553:CDS | 40.0% | |
| GACCGTCAGAATAATAGAGT+AGG | + | chr1.1:65680861-65680880 | None:intergenic | 40.0% | |
| GCCTATGAGTTAAACACTCA+TGG | + | chr1.1:65681998-65682017 | None:intergenic | 40.0% | |
| GCTGTGCTAAGACTAAAATC+TGG | - | chr1.1:65682546-65682565 | MS.gene21553:CDS | 40.0% | |
| GCTTCAGTTACTGTTAAGGA+GGG | + | chr1.1:65679570-65679589 | None:intergenic | 40.0% | |
| GGCATGAATCCTAAATTCGA+TGG | + | chr1.1:65682811-65682830 | None:intergenic | 40.0% | |
| GGGTAAAGCTGAATCATCAT+TGG | + | chr1.1:65680045-65680064 | None:intergenic | 40.0% | |
| GTACAAGGACTTCCTTGAAA+CGG | + | chr1.1:65679391-65679410 | None:intergenic | 40.0% | |
| GTAGATGTTGCATCCTTTGT+GGG | + | chr1.1:65680092-65680111 | None:intergenic | 40.0% | |
| GTAGGTAGGTACTCAAGATA+CGG | + | chr1.1:65680843-65680862 | None:intergenic | 40.0% | |
| TAGAAGAGAATGCTGAGAAG+AGG | - | chr1.1:65680420-65680439 | MS.gene21553:intron | 40.0% | |
| TAGCCATGTACTGCAAACAT+AGG | - | chr1.1:65680996-65681015 | MS.gene21553:intron | 40.0% | |
| TAGGTAGGTACTCAAGATAC+GGG | + | chr1.1:65680842-65680861 | None:intergenic | 40.0% | |
| TAGTCAACTGCAGGAATATG+TGG | - | chr1.1:65682494-65682513 | MS.gene21553:CDS | 40.0% | |
| TCACCTATGTTTGCAGTACA+CGG | + | chr1.1:65681002-65681021 | None:intergenic | 40.0% | |
| TCACCTATGTTTGCAGTACA+TGG | + | chr1.1:65681002-65681021 | None:intergenic | 40.0% | |
| TCATGGAGCTCATTGCAATT+CGG | + | chr1.1:65682750-65682769 | None:intergenic | 40.0% | |
| TCTTCAATGGTTACCGAAGA+TGG | - | chr1.1:65679114-65679133 | MS.gene21553:CDS | 40.0% | |
| TGAAGATTGGAAGGATCCTA+TGG | - | chr1.1:65679257-65679276 | MS.gene21553:CDS | 40.0% | |
| TGCATCAGGAGATAGAAAAG+GGG | - | chr1.1:65680705-65680724 | MS.gene21553:intron | 40.0% | |
| TGCTGGTATTCCCTTTAATG+AGG | - | chr1.1:65680187-65680206 | MS.gene21553:intron | 40.0% | |
| TGCTTCAGTTACTGTTAAGG+AGG | + | chr1.1:65679571-65679590 | None:intergenic | 40.0% | |
| TTCTTCCATACTCATTCTGG+AGG | - | chr1.1:65680499-65680518 | MS.gene21553:intron | 40.0% | |
| TTGCCCAAAGCCTCATTAAA+GGG | + | chr1.1:65680200-65680219 | None:intergenic | 40.0% | |
| ! | CTGAATACTTTGAAGGGGAA+AGG | - | chr1.1:65679450-65679469 | MS.gene21553:CDS | 40.0% |
| ! | GTTTTGTGTGTAGTGACTGT+TGG | - | chr1.1:65681609-65681628 | MS.gene21553:CDS | 40.0% |
| ! | TGATTTGGAACTTCAGATGG+TGG | + | chr1.1:65679957-65679976 | None:intergenic | 40.0% |
| ! | TTAGTTGCTGATTGCTTCTG+TGG | - | chr1.1:65681587-65681606 | MS.gene21553:CDS | 40.0% |
| !! | GATTTGGCTGTTTTCACTGT+TGG | + | chr1.1:65680119-65680138 | None:intergenic | 40.0% |
| !! | GCTAGTTCTTTTCTTAGGAG+TGG | - | chr1.1:65681661-65681680 | MS.gene21553:CDS | 40.0% |
| !! | GGGTTGCTAGTTCTTTTCTT+AGG | - | chr1.1:65681656-65681675 | MS.gene21553:CDS | 40.0% |
| !!! | TCAGCAGTTTTGCTGTTTTC+TGG | - | chr1.1:65681550-65681569 | MS.gene21553:CDS | 40.0% |
| !!! | TGGAGAGAGCAGTTTTGTTT+CGG | - | chr1.1:65681505-65681524 | MS.gene21553:CDS | 40.0% |
| !!! | TTAAGGAGGGTTTTAGTTCC+CGG | + | chr1.1:65679557-65679576 | None:intergenic | 40.0% |
| AATGAGCTCCATGAGAAGCA+AGG | - | chr1.1:65682756-65682775 | MS.gene21553:CDS | 45.0% | |
| ACACGAGTCATTTCACCAGA+AGG | - | chr1.1:65679624-65679643 | MS.gene21553:intron | 45.0% | |
| ACCTAAAGCTTGTGGCAAAG+CGG | - | chr1.1:65679872-65679891 | MS.gene21553:intron | 45.0% | |
| ACTAGCTGCCTTCTTTCTGA+CGG | + | chr1.1:65682478-65682497 | None:intergenic | 45.0% | |
| AGATAAGCTTCGCAAGCTTC+AGG | - | chr1.1:65680340-65680359 | MS.gene21553:intron | 45.0% | |
| AGCACAAGAATTGCAGGATG+AGG | - | chr1.1:65680271-65680290 | MS.gene21553:intron | 45.0% | |
| AGCTTCGATTCAGCGGAATT+AGG | - | chr1.1:65679189-65679208 | MS.gene21553:CDS | 45.0% | |
| AGGAAGTCCTTGTACACAGA+AGG | - | chr1.1:65679396-65679415 | MS.gene21553:CDS | 45.0% | |
| AGGAGGCTACAGTCAAGAAA+TGG | - | chr1.1:65679356-65679375 | MS.gene21553:CDS | 45.0% | |
| ATCTCGAGCACAAGAATTGC+AGG | - | chr1.1:65680265-65680284 | MS.gene21553:intron | 45.0% | |
| ATGAGCTCCATGAGAAGCAA+GGG | - | chr1.1:65682757-65682776 | MS.gene21553:CDS | 45.0% | |
| ATTCTCCTCTTCCGCTCAAA+AGG | - | chr1.1:65680151-65680170 | MS.gene21553:intron | 45.0% | |
| CAAGGCGCACTAATAAGCTT+GGG | + | chr1.1:65681759-65681778 | None:intergenic | 45.0% | |
| CACCAACTCTTTCTCTAGCA+AGG | + | chr1.1:65680534-65680553 | None:intergenic | 45.0% | |
| CAGCATGGTAAAGCTAGAGA+AGG | - | chr1.1:65682518-65682537 | MS.gene21553:CDS | 45.0% | |
| CGCTGCAAAATTACCCACAA+AGG | - | chr1.1:65680076-65680095 | MS.gene21553:intron | 45.0% | |
| CGTGGCTCCTCAAATACAAA+AGG | - | chr1.1:65679987-65680006 | MS.gene21553:intron | 45.0% | |
| CTACTGCTGCCCAAGAAATT+TGG | + | chr1.1:65682832-65682851 | None:intergenic | 45.0% | |
| CTAGCCAATACTGAGGTATG+TGG | - | chr1.1:65680737-65680756 | MS.gene21553:intron | 45.0% | |
| CTTGCCCAAAGCCTCATTAA+AGG | + | chr1.1:65680201-65680220 | None:intergenic | 45.0% | |
| CTTTGCCTCCAGAATGAGTA+TGG | + | chr1.1:65680507-65680526 | None:intergenic | 45.0% | |
| CTTTGGGCAAGTTTATCCCA+CGG | - | chr1.1:65680210-65680229 | MS.gene21553:intron | 45.0% | |
| GAAAAGAACTAGCAACCCAC+TGG | + | chr1.1:65681654-65681673 | None:intergenic | 45.0% | |
| GAATGACTGGGCCAATAAGA+AGG | - | chr1.1:65680304-65680323 | MS.gene21553:intron | 45.0% | |
| GATGATTCAGCTTTACCCGA+AGG | - | chr1.1:65680047-65680066 | MS.gene21553:intron | 45.0% | |
| GATTCAGCGGAATTAGGGTT+AGG | - | chr1.1:65679195-65679214 | MS.gene21553:CDS | 45.0% | |
| GCAAAACTGCTGACCGAAAA+AGG | + | chr1.1:65681543-65681562 | None:intergenic | 45.0% | |
| GCAAACATAGGTGAGATGAG+CGG | - | chr1.1:65681008-65681027 | MS.gene21553:intron | 45.0% | |
| GCTTCGATTCAGCGGAATTA+GGG | - | chr1.1:65679190-65679209 | MS.gene21553:CDS | 45.0% | |
| GGAAAGCTTACAAGCGTAAG+TGG | - | chr1.1:65679906-65679925 | MS.gene21553:intron | 45.0% | |
| GGCAAAGCGGGTGTTAAATT+AGG | - | chr1.1:65679885-65679904 | MS.gene21553:intron | 45.0% | |
| GGCAAGTTATCAACAAGCAC+TGG | - | chr1.1:65680583-65680602 | MS.gene21553:intron | 45.0% | |
| GGCCAATAAGAAGGTTATGC+AGG | - | chr1.1:65680313-65680332 | MS.gene21553:intron | 45.0% | |
| GTAGGACCACCATCGAATTT+AGG | - | chr1.1:65682799-65682818 | MS.gene21553:CDS | 45.0% | |
| GTCCTTGCTAGAGAAAGAGT+TGG | - | chr1.1:65680529-65680548 | MS.gene21553:intron | 45.0% | |
| TAAAGTATGCAGCCTGTGTG+AGG | + | chr1.1:65682407-65682426 | None:intergenic | 45.0% | |
| TAGCCGTGTACTGCAAACAT+AGG | - | chr1.1:65681251-65681270 | MS.gene21553:CDS | 45.0% | |
| TGAAGGAATGCCCTTCATGT+AGG | - | chr1.1:65682781-65682800 | MS.gene21553:CDS | 45.0% | |
| TTTGGGCAAGTTTATCCCAC+GGG | - | chr1.1:65680211-65680230 | MS.gene21553:intron | 45.0% | |
| ! | AGTGACTGTTGGAGCTTTGT+TGG | - | chr1.1:65681620-65681639 | MS.gene21553:CDS | 45.0% |
| ! | GTCGTTGGCTGAAAAGTCAA+TGG | - | chr1.1:65680562-65680581 | MS.gene21553:intron | 45.0% |
| ! | TAAGGGGTTTTTGTTCGAGC+CGG | - | chr1.1:65681689-65681708 | MS.gene21553:CDS | 45.0% |
| ! | TGAAGCACTCATGAAAGCTG+AGG | - | chr1.1:65682446-65682465 | MS.gene21553:CDS | 45.0% |
| ! | TGAGAAGAGGATCTCTGAAG+TGG | - | chr1.1:65680433-65680452 | MS.gene21553:intron | 45.0% |
| ! | TTGAACCTTTTGAGCGGAAG+AGG | + | chr1.1:65680159-65680178 | None:intergenic | 45.0% |
| ! | TTTTGAGCGGAAGAGGAGAA+TGG | + | chr1.1:65680152-65680171 | None:intergenic | 45.0% |
| !! | ACTGTTGGAGCTTTGTTGGT+TGG | - | chr1.1:65681624-65681643 | MS.gene21553:CDS | 45.0% |
| !! | TTGTTGGTTGGTAGTCCAGT+GGG | - | chr1.1:65681636-65681655 | MS.gene21553:CDS | 45.0% |
| !! | TTTGTTGGTTGGTAGTCCAG+TGG | - | chr1.1:65681635-65681654 | MS.gene21553:CDS | 45.0% |
| !! | TTTTGTTTCGGTGTGGTGCT+GGG | - | chr1.1:65681517-65681536 | MS.gene21553:CDS | 45.0% |
| !!! | AGAGCAGTTTTGTTTCGGTG+TGG | - | chr1.1:65681510-65681529 | MS.gene21553:CDS | 45.0% |
| !!! | GAAGTCGCCGTGTCTTTTTT+AGG | + | chr1.1:65680913-65680932 | None:intergenic | 45.0% |
| ACAACATTTGGGTGTGCTCG+AGG | - | chr1.1:65679233-65679252 | MS.gene21553:CDS | 50.0% | |
| ACAAGCCCAGTCGTGGAAAA+CGG | - | chr1.1:65680628-65680647 | MS.gene21553:intron | 50.0% | |
| AGCACTCATGAAAGCTGAGG+AGG | - | chr1.1:65682449-65682468 | MS.gene21553:CDS | 50.0% | |
| AGCTGGTGGAAGATTGAAGC+GGG | - | chr1.1:65682650-65682669 | MS.gene21553:CDS | 50.0% | |
| AGGGTCTCCTTCTGTGTACA+AGG | + | chr1.1:65679406-65679425 | None:intergenic | 50.0% | |
| AGGTGCAAAGCTGGAATGAC+TGG | - | chr1.1:65680291-65680310 | MS.gene21553:intron | 50.0% | |
| CACAAAACCTGATGCGCACA+TGG | + | chr1.1:65682726-65682745 | None:intergenic | 50.0% | |
| CAGCTGGTGGAAGATTGAAG+CGG | - | chr1.1:65682649-65682668 | MS.gene21553:CDS | 50.0% | |
| CCATGAGAAGCAAGGGATGA+AGG | - | chr1.1:65682764-65682783 | MS.gene21553:CDS | 50.0% | |
| CCTAAAGCTTGTGGCAAAGC+GGG | - | chr1.1:65679873-65679892 | MS.gene21553:intron | 50.0% | |
| CCTTCATCCCTTGCTTCTCA+TGG | + | chr1.1:65682767-65682786 | None:intergenic | 50.0% | |
| CTATTCAACAAGCCCAGTCG+TGG | - | chr1.1:65680621-65680640 | MS.gene21553:intron | 50.0% | |
| CTTATTAGTGCGCCTTGCAC+GGG | - | chr1.1:65681762-65681781 | MS.gene21553:CDS | 50.0% | |
| GATTCAGCTTTACCCGAAGG+AGG | - | chr1.1:65680050-65680069 | MS.gene21553:intron | 50.0% | |
| GCAAGGCGCACTAATAAGCT+TGG | + | chr1.1:65681760-65681779 | None:intergenic | 50.0% | |
| GCAGGAATATGTGGACAGCA+TGG | - | chr1.1:65682503-65682522 | MS.gene21553:CDS | 50.0% | |
| GCTCGAGGTTGAAGATTGGA+AGG | - | chr1.1:65679248-65679267 | MS.gene21553:CDS | 50.0% | |
| GCTTATTAGTGCGCCTTGCA+CGG | - | chr1.1:65681761-65681780 | MS.gene21553:CDS | 50.0% | |
| GGTGCAAAGCTGGAATGACT+GGG | - | chr1.1:65680292-65680311 | MS.gene21553:intron | 50.0% | |
| GTGTGCTCGAGGTTGAAGAT+TGG | - | chr1.1:65679244-65679263 | MS.gene21553:CDS | 50.0% | |
| GTGTGTCATGTGCCTATCAG+AGG | - | chr1.1:65682680-65682699 | MS.gene21553:CDS | 50.0% | |
| GTTTATCCCACGGGATGAGA+AGG | - | chr1.1:65680220-65680239 | MS.gene21553:intron | 50.0% | |
| TAAGCTTCGCAAGCTTCAGG+CGG | - | chr1.1:65680343-65680362 | MS.gene21553:intron | 50.0% | |
| TAGGTGCCTATGCATGTCCA+GGG | + | chr1.1:65680894-65680913 | None:intergenic | 50.0% | |
| TCACCAGAAGGTCAACTGAG+TGG | - | chr1.1:65679636-65679655 | MS.gene21553:intron | 50.0% | |
| TCATGTGCCTATCAGAGGAG+AGG | - | chr1.1:65682685-65682704 | MS.gene21553:CDS | 50.0% | |
| TCCGCAAAGCTTCGATTCAG+CGG | - | chr1.1:65679182-65679201 | MS.gene21553:CDS | 50.0% | |
| TCCGCTGAATCGAAGCTTTG+CGG | + | chr1.1:65679186-65679205 | None:intergenic | 50.0% | |
| TCCTATGGCAACTCAGCTTG+AGG | - | chr1.1:65679272-65679291 | MS.gene21553:CDS | 50.0% | |
| TCCTCAAGCTGAGTTGCCAT+AGG | + | chr1.1:65679276-65679295 | None:intergenic | 50.0% | |
| TGAAGCAATGTGGGAGTTGC+TGG | - | chr1.1:65679584-65679603 | MS.gene21553:intron | 50.0% | |
| TGGCTGAAATGGCCGTTTCA+AGG | - | chr1.1:65679376-65679395 | MS.gene21553:CDS | 50.0% | |
| TTAACCAACAAGCCCGTGCA+AGG | + | chr1.1:65681777-65681796 | None:intergenic | 50.0% | |
| TTAGGTGCCTATGCATGTCC+AGG | + | chr1.1:65680895-65680914 | None:intergenic | 50.0% | |
| ! | AAATCTGAGACGGTGACGAC+GGG | - | chr1.1:65682609-65682628 | MS.gene21553:CDS | 50.0% |
| ! | CAACTCCGTTTTCCACGACT+GGG | + | chr1.1:65680636-65680655 | None:intergenic | 50.0% |
| ! | CGATGGTGGTCCTACATGAA+GGG | + | chr1.1:65682794-65682813 | None:intergenic | 50.0% |
| ! | GAAATCTGAGACGGTGACGA+CGG | - | chr1.1:65682608-65682627 | MS.gene21553:CDS | 50.0% |
| ! | GTTGGTGTCTGCTAAGTCGT+TGG | - | chr1.1:65680547-65680566 | MS.gene21553:intron | 50.0% |
| ! | TCGATGGTGGTCCTACATGA+AGG | + | chr1.1:65682795-65682814 | None:intergenic | 50.0% |
| ! | TTTTCTGCCATGTGCGCATC+AGG | - | chr1.1:65682716-65682735 | MS.gene21553:CDS | 50.0% |
| ! | TTTTGCAGCGCTACCTCCTT+CGG | + | chr1.1:65680066-65680085 | None:intergenic | 50.0% |
| !! | CTCTGAAGTGGAGAATGCCA+TGG | - | chr1.1:65680445-65680464 | MS.gene21553:intron | 50.0% |
| !! | TAGAGATGCTCGGTGTACTC+CGG | - | chr1.1:65679535-65679554 | MS.gene21553:intron | 50.0% |
| !! | TCCACCAGCTGGTTTGTCTT+GGG | + | chr1.1:65682640-65682659 | None:intergenic | 50.0% |
| !! | TTCCACCAGCTGGTTTGTCT+TGG | + | chr1.1:65682641-65682660 | None:intergenic | 50.0% |
| !!! | GTTTTGTTTCGGTGTGGTGC+TGG | - | chr1.1:65681516-65681535 | MS.gene21553:CDS | 50.0% |
| !!! | TGCTGTTTTCTGGTCTGCTG+CGG | - | chr1.1:65681560-65681579 | MS.gene21553:CDS | 50.0% |
| AGGTGCCTATGCATGTCCAG+GGG | + | chr1.1:65680893-65680912 | None:intergenic | 55.0% | |
| CAACCGACCTCTCCTCTGAT+AGG | + | chr1.1:65682695-65682714 | None:intergenic | 55.0% | |
| CCACCACTCAGTTGACCTTC+TGG | + | chr1.1:65679642-65679661 | None:intergenic | 55.0% | |
| CCAGAAGGTCAACTGAGTGG+TGG | - | chr1.1:65679639-65679658 | MS.gene21553:intron | 55.0% | |
| CCAGTCGTGGAAAACGGAGT+TGG | - | chr1.1:65680634-65680653 | MS.gene21553:intron | 55.0% | |
| CCCGCTTTGCCACAAGCTTT+AGG | + | chr1.1:65679876-65679895 | None:intergenic | 55.0% | |
| CGCTTCAATCTTCCACCAGC+TGG | + | chr1.1:65682651-65682670 | None:intergenic | 55.0% | |
| GAAGGCAGCTAGTCAACTGC+AGG | - | chr1.1:65682485-65682504 | MS.gene21553:CDS | 55.0% | |
| GCGGAAGAGGAGAATGGCTT+AGG | + | chr1.1:65680146-65680165 | None:intergenic | 55.0% | |
| GGAGGATGCCGTCAGAAAGA+AGG | - | chr1.1:65682467-65682486 | MS.gene21553:CDS | 55.0% | |
| GGCGCACTAATAAGCTTGGG+TGG | + | chr1.1:65681756-65681775 | None:intergenic | 55.0% | |
| GTGCCTATCAGAGGAGAGGT+CGG | - | chr1.1:65682689-65682708 | MS.gene21553:CDS | 55.0% | |
| GTTCGTCCTTCTCATCCCGT+GGG | + | chr1.1:65680229-65680248 | None:intergenic | 55.0% | |
| TCCCAAGACAAACCAGCTGG+TGG | - | chr1.1:65682636-65682655 | MS.gene21553:CDS | 55.0% | |
| TGCAGGATGAGGTGCAAAGC+TGG | - | chr1.1:65680282-65680301 | MS.gene21553:intron | 55.0% | |
| TGTTCGTCCTTCTCATCCCG+TGG | + | chr1.1:65680230-65680249 | None:intergenic | 55.0% | |
| TTTGCAGCGCTACCTCCTTC+GGG | + | chr1.1:65680065-65680084 | None:intergenic | 55.0% | |
| ! | AATCTGAGACGGTGACGACG+GGG | - | chr1.1:65682610-65682629 | MS.gene21553:CDS | 55.0% |
| ! | CCAACTCCGTTTTCCACGAC+TGG | + | chr1.1:65680637-65680656 | None:intergenic | 55.0% |
| !! | AGAGATGCTCGGTGTACTCC+GGG | - | chr1.1:65679536-65679555 | MS.gene21553:intron | 55.0% |
| !! | GTGTGGTGCTGGGCCTTTTT+CGG | - | chr1.1:65681527-65681546 | MS.gene21553:CDS | 55.0% |
| GGCTCCCAAGACAAACCAGC+TGG | - | chr1.1:65682633-65682652 | MS.gene21553:CDS | 60.0% | |
| TCGTGCCCCTGGACATGCAT+AGG | - | chr1.1:65680885-65680904 | MS.gene21553:intron | 60.0% | |
| ! | ATCGGTTGCCGCAAAAGCGC+CGG | + | chr1.1:65681711-65681730 | None:intergenic | 60.0% |
| ! | ATCTGAGACGGTGACGACGG+GGG | - | chr1.1:65682611-65682630 | MS.gene21553:CDS | 60.0% |
| ! | TGTTCGAGCCGGCGCTTTTG+CGG | - | chr1.1:65681700-65681719 | MS.gene21553:CDS | 60.0% |
| TGCGCCTTGCACGGGCTTGT+TGG | - | chr1.1:65681770-65681789 | MS.gene21553:CDS | 65.0% | |
| ! | TCTGAGACGGTGACGACGGG+GGG | - | chr1.1:65682612-65682631 | MS.gene21553:CDS | 65.0% |
| ! | GACGGTCTGACTCGTGCCCC+TGG | - | chr1.1:65680874-65680893 | MS.gene21553:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 65679012 | 65682851 | 65679012 | ID=MS.gene21553 |
| chr1.1 | mRNA | 65679012 | 65682851 | 65679012 | ID=MS.gene21553.t1;Parent=MS.gene21553 |
| chr1.1 | exon | 65681112 | 65682851 | 65681112 | ID=MS.gene21553.t1.exon1;Parent=MS.gene21553.t1 |
| chr1.1 | CDS | 65681112 | 65682851 | 65681112 | ID=cds.MS.gene21553.t1;Parent=MS.gene21553.t1 |
| chr1.1 | exon | 65679012 | 65679497 | 65679012 | ID=MS.gene21553.t1.exon2;Parent=MS.gene21553.t1 |
| chr1.1 | CDS | 65679012 | 65679497 | 65679012 | ID=cds.MS.gene21553.t1;Parent=MS.gene21553.t1 |
| Gene Sequence |
| Protein sequence |
